Dmrtb1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Dmrtb1 0.06 0.04 3.4e-05 0.07 0.06 0.05 0.07 3.2e-06 6.0e-06 4.3e-05 4.4e-06
2 PL gene expression Dmrtb1 0.07 0.05 8.0e-03 0.01 0 0.01 0.01 1.5e-02 2.5e-01 2.4e-02 3.7e-02
3 NAcc gene expression Dmrtb1 0.03 0.02 5.9e-03 0 -0 0 -0 2.3e-01 6.1e-01 2.9e-01 6.1e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.71.3-0.80.3-1.1
Area under the delay curve0.20.20.4-0.1-0.60.4
BMI with tail0.72.46.92.60.40.4
BMI without tail0.61.73.11.8-0.7-1.3
Body weight0.41.74.92.20.5-0.1
Weight adjusted by age0.50.81.20.61.1-0.8
Bone surface0.10.10.3-0.5-0.0-0.1
Bone volume0.10.10.3-0.00.5-0.2
Breakpoint value in progressive ratio session0.20.30.6-0.30.80.3
Number of licking bursts0.40.70.90.61.00.8
Context. condit. distance diff. score0.81.01.3-0.51.1-1.2
Locomotion velocity, session 11.51.62.7-1.70.91.2
Locomotion distance, session 10.10.10.3-0.10.20.5
Locomotion velocity, session 21.41.62.9-1.70.81.1
Locomotion distance, session 20.50.70.90.9-0.90.6
Locomotion velocity, session 30.40.40.8-0.90.50.4
Locomotion distance, session 30.30.30.80.3-0.1-0.9
Stereotopy head waving bouts, day 30.30.30.6-0.00.60.8
Stereotopy head waving duration, day 30.30.30.5-0.40.70.6
Locomotion velocity, session 70.00.00.0-0.1-0.2-0.1
Locomotion distance, session 71.11.42.2-0.1-1.5-1.4
Stereotopy head waving bouts, day 71.01.11.8-1.30.80.9
Stereotopy head waving duration, day 71.21.41.9-1.41.11.0
Locomotion velocity, session 80.70.91.7-1.31.00.1
Locomotion distance, session 80.20.30.7-0.00.3-0.9
Degree of sensitization distance0.20.20.50.1-0.7-0.3
Degree of sensitization stereotypy0.60.71.1-1.10.40.8
Conditioned locomotion0.20.20.30.40.60.6
Cocaine response after cond. corrected0.81.02.71.6-0.5-0.0
Cocaine response after cond. not corrected1.01.23.61.90.2-0.2
Cocaine response before conditioning0.40.51.00.31.0-0.6
Saline control response0.70.92.1-0.1-1.5-0.8
Bone: connectivity density0.50.81.6-1.3-0.5-0.9
Bone: cortical apparent density1.11.42.5-1.60.6-1.2
Bone: cortical area0.50.72.11.40.1-0.3
Bone: cortical porosity2.42.64.5-0.11.82.1
Bone: cortical porosity3.43.66.8-0.52.02.6
Bone: cortical thickness1.11.84.82.20.60.3
Bone: cortical thickness1.51.82.71.71.60.4
Bone: cortical tissue density1.11.52.6-1.60.6-1.2
Condit. Reinf. active minus inactive responses0.30.40.70.80.5-0.5
Condit. Reinf. active-inactive response ratio0.60.60.80.90.9-0.6
Condit. Reinf. active responses0.70.81.61.30.20.9
Condit. Reinf. inactive responses1.11.42.90.3-1.01.7
Incentive salience index mean0.81.02.61.60.70.2
Condit. Reinf. lever presses0.81.23.01.70.20.7
Condit. Reinf. active minus inactive responses1.82.35.30.5-1.2-2.3
Condit. Reinf. active-inactive response ratio2.32.76.50.0-1.3-2.6
Condit. Reinf. active responses1.31.94.80.7-0.6-2.2
Condit. Reinf. inactive responses0.30.40.90.90.6-0.3
Condit. Reinf. lever presses0.81.12.2-0.5-1.5-0.9
Condit. Reinf. lever reinforcers received1.01.33.20.6-0.7-1.8
Conditioned reinforcement - actives0.50.91.71.3-0.4-0.9
Conditioned reinforcement - inactives0.60.92.60.11.60.1
Conditioned locomotion0.81.01.50.6-1.1-1.2
Patch foraging indifference point 0 sec0.61.22.70.9-1.7-0.2
Patch foraging indifference point AUC0.91.42.8-0.7-0.9-1.7
Delay disc. indifference point, 0s delay0.10.20.3-0.6-0.00.4
Delay disc. indifference point, 16s delay0.80.91.21.1-0.80.9
Delay disc. indifference point, 2s delay0.30.30.7-0.30.8-0.5
Delay disc. indifference point, 24s delay0.50.61.1-0.4-1.10.6
Delay disc. indifference point, 4s delay0.10.10.30.1-0.50.4
Delay disc. indifference point, 8s delay0.50.61.5-0.0-1.20.6
Indifference point function ln k0.30.60.91.0-0.00.9
Indifference point function log k0.30.60.91.0-0.00.9
Patch foraging total patch changes 0 sec0.61.22.80.8-1.7-0.3
Patch foraging total patch changes 12 sec0.81.11.4-1.2-1.1-0.7
Patch foraging total patch changes 18 sec0.50.71.80.6-0.0-1.3
Patch foraging total patch changes 24 sec0.40.61.51.2-0.40.5
Patch foraging total patch changes 6 sec0.50.82.10.3-1.5-0.4
Patch foraging time to switch 0 sec1.02.02.3-1.51.51.2
Patch foraging water rate 0 sec0.71.54.22.0-0.50.3
Patch foraging water rate 12 sec0.91.95.22.3-0.8-0.1
Patch foraging water rate 18 sec0.10.20.50.1-0.40.7
Patch foraging water rate 24 sec0.10.10.30.40.5-0.1
Patch foraging water rate 6 sec1.52.23.31.6-0.91.8
Seeking ratio, delayed vs. immediate footshock1.41.73.01.71.2-0.7
Distance traveled before self-admin0.60.82.20.4-0.1-1.5
Distance traveled after self-admin1.92.33.51.1-1.9-1.4
Extensor digitorum longus weight1.03.85.52.31.8-1.6
Bone: elastic displacement1.11.33.80.30.3-1.9
Bone: elastic work0.70.91.40.6-0.9-1.2
Bone: endosteal estimation0.20.51.3-0.50.1-1.2
Bone: endosteal perimeter0.20.40.7-0.8-0.80.0
Epididymis fat weight0.10.30.3-0.5-0.50.5
Delta time in closed arm before/after self-admin4.23.911.8-0.00.1-3.4
Delta time in open arm before/after self-admin2.01.93.20.2-1.61.8
Diff in mean of infusions in LGA sessions0.10.10.20.10.40.4
Delay discount exponential model param0.20.20.50.10.7-0.4
Extinction: sum of active levers before priming0.50.61.70.31.3-0.1
Active lever presses in extinction session 60.90.91.51.20.90.6
Bone: final force0.00.00.0-0.1-0.1-0.2
Bone: final moment0.00.00.00.1-0.2-0.2
Food consumed during 24 hour testing period1.01.33.60.5-1.90.3
Glucose0.00.10.10.3-0.1-0.2
Heart weight1.62.44.31.72.10.2
Delay discount hyperbolic model param0.10.10.30.20.5-0.3
Intermittent access intake day 1-15 change0.30.60.80.9-0.7-0.7
Intermittent access intake escalation0.30.50.91.0-0.7-0.4
Intermittent access intake escalation 20.30.40.90.4-0.9-0.2
Intermitt. access day 1 inactive lever presses0.20.91.61.30.9-0.6
Intermitt. access day 15 inactive lever presses0.10.30.50.70.30.3
Intermitt. access escalation Index0.10.10.20.3-0.50.3
Intermittent access day 1 total infusions0.71.23.0-0.41.70.6
Intermittent access day 15 total infusions0.20.30.50.50.70.2
Intermittent access terminal intake (last 3 days)0.20.20.40.10.5-0.6
Intermittent access total infusions0.40.51.4-0.11.2-0.2
Intermittent access day 1 locomotion0.91.22.8-0.21.70.8
Intermittent access day 15 total locomotion0.00.00.00.1-0.00.0
Intermittent access total locomotion0.10.20.5-0.00.70.1
Intermittent access standard deviation0.81.83.21.81.40.3
Left kidney weight2.210.128.95.40.5-1.1
Right kidney weight1.46.318.64.30.3-0.5
Cocaine induced anxiety0.20.30.70.8-0.5-0.0
Post-drug Anxiety0.50.51.11.00.50.6
Baseline Anxiety2.93.36.00.42.52.0
Tail length0.20.61.8-0.0-0.1-1.3
Length with tail0.10.40.70.8-0.0-0.8
Length without tail0.51.64.62.1-0.30.2
Times rat made contact with spout0.80.92.00.5-1.4-0.7
Lifetime Intake0.40.51.5-0.21.2-0.1
Liver weight, left0.10.20.2-0.5-0.4-0.2
Liver weight, right0.30.50.9-0.6-0.5-0.9
Locomotor activity0.50.81.30.0-1.2-1.1
Locomotor testing distance1.11.93.20.4-1.5-1.8
Locomotor testing rearing1.22.46.10.2-1.1-2.5
Locomotion in novel chamber1.92.54.42.1-0.21.7
Locomotion in novel chamber post-restriction0.50.81.60.41.30.7
Fecal boli incidents, locomotor time 10.20.20.40.1-0.50.6
Change in fecal boli incidents, locomotor task0.20.20.5-0.7-0.10.1
Time >=10cm from walls, locomotor time 11.41.53.8-0.90.1-1.9
Bouts of movement, locomotor time 10.30.40.9-0.9-0.40.3
Total resting periods, locomotor time 10.40.50.7-0.8-0.30.8
Rest time, locomotor task time 10.20.20.5-0.3-0.20.7
Distance moved, locomotor task time 10.30.51.0-0.30.5-1.0
Vertical activity count, locomotor time 10.10.30.50.5-0.2-0.7
Time >=10cm from walls, locomotor time 20.30.51.50.20.0-1.2
Bouts of movement, locomotor time 20.50.81.2-0.50.9-1.1
Total resting periods, locomotor time 20.40.61.0-0.50.7-1.0
Rest time, locomotor task time 20.40.61.3-0.3-1.10.5
Distance moved, locomotor task time 20.60.81.40.80.5-1.2
Vertical activity count, locomotor time 20.40.61.51.20.0-0.6
Light reinforcement 10.10.40.40.60.50.7
Light reinforcement 20.50.82.21.50.20.3
Bone: marrow area0.20.51.4-0.40.1-1.2
Bone: maximum diameter0.10.20.30.50.50.3
Bone: maximum force0.10.20.30.0-0.6-0.4
Bone: maximum moment0.10.20.20.2-0.5-0.5
Mean time between licks in bursts0.41.12.8-1.7-0.50.2
Mean num. licks in bursts0.81.22.40.3-1.5-1.1
Cd content in liver2.02.25.4-0.90.6-2.3
Co content in liver1.21.44.1-0.2-0.1-2.0
Cu content in liver3.23.86.1-0.7-2.1-2.5
Fe content in liver0.50.60.90.9-0.4-0.9
K content in liver1.11.02.4-0.7-1.5-0.3
Mg content in liver1.41.53.60.6-1.90.6
Mn content in liver0.40.51.1-0.51.1-0.1
Na content in liver0.30.30.7-0.8-0.2-0.5
Rb content in liver0.10.10.2-0.2-0.4-0.2
Se content in liver0.60.81.8-0.4-0.6-1.3
Sr content in liver0.80.71.50.01.2-0.7
Zn content in liver0.50.51.1-1.1-0.6-0.2
Bone: minimum diameter0.71.32.40.5-1.5-1.2
Time in familiar zone, hab. session 10.40.40.8-0.4-0.3-0.9
Time in novel zone, hab. session 10.40.41.1-0.5-0.0-1.0
Total zone transitions, hab. session 10.10.20.5-0.10.7-0.3
Total locomotion distance, hab. session 10.20.30.70.80.60.1
Locomotion velocity, hab. session 10.30.40.70.60.40.9
Time in familiar zone, hab. session 21.71.83.0-0.8-1.3-1.7
Time in novel zone, hab. session 20.20.20.40.40.60.5
Total zone transitions, hab. session 20.10.10.30.1-0.5-0.3
Total locomotion distance, hab. session 20.30.40.80.9-0.50.4
Locomotion velocity, hab. session 20.40.51.01.0-0.30.7
Novel to familiar place preference ratio1.31.43.60.8-1.90.3
Novelty place preference0.91.02.80.4-1.70.2
Time in novel zone, NPP test0.60.61.80.3-1.3-0.1
Total zone transitions, NPP test0.50.71.61.30.6-0.3
Total locomotion distance, NPP test0.50.72.01.40.30.0
Locomotion velocity, NPP test0.81.13.01.70.30.3
Intraocular pressure0.40.61.40.6-0.21.2
Delta distance traveled before/after self-admin1.11.11.61.3-1.20.6
Delta ambulatory time before/after self-admin0.50.71.11.1-0.90.3
Parametrial fat weight0.71.63.60.0-1.91.1
Pavlov. Cond. lever latency0.91.22.8-1.7-0.4-0.7
Pavlov. Cond. magazine entry latency0.10.20.3-0.6-0.4-0.2
Pavlov. Cond. change in total contacts0.00.00.10.10.40.1
Pavlov. Cond. index score0.10.20.50.70.1-0.1
Pavlov. Cond. latency score0.20.20.60.80.10.1
Pavlov. Cond. lever contacts0.60.81.91.40.20.6
Pavlov. Cond. magazine entry number0.20.30.30.6-0.50.4
Pavlov. Cond. intertrial magazine entries1.31.51.90.9-1.41.4
Pavlov. Cond. lever-magazine prob. diff.0.20.20.70.8-0.1-0.1
Pavlov. Cond. response bias0.10.10.10.30.2-0.3
Pavlov. Cond. lever latency1.21.64.9-0.02.20.1
Pavlov. Cond. magazine entry latency2.73.35.7-1.2-2.4-1.7
Pavlov. Cond. change in total contacts1.01.64.6-0.4-2.2-0.1
Pavlov. Cond. index score2.33.17.9-0.8-2.8-1.0
Pavlov. Cond. latency score2.43.27.9-0.7-2.8-1.1
Pavlov. Cond. lever contacts1.01.33.70.0-1.9-0.5
Pavlov. Cond. magazine entry number2.63.24.71.72.21.3
Pavlov. Cond. intertrial magazine entries0.61.01.80.01.31.0
Pavlov. Cond. lever-magazine prob. diff.2.83.79.3-0.9-3.0-1.0
Pavlov. Cond. response bias1.21.63.9-0.6-2.0-0.7
Time in closed arm before self-admin0.81.02.1-0.7-0.71.4
Time in closed arm after self-admin0.20.20.6-0.3-0.1-0.8
Time in open arm before self-admin0.91.02.90.10.1-1.7
Time in open arm after self-admin0.80.91.90.7-1.40.5
Bone: periosteal estimation0.20.40.60.80.3-0.8
Bone: periosteal perimeter0.00.10.10.2-0.3-0.2
Bone: post-yield work0.10.10.2-0.30.10.4
Progressive ratio test 1 active lever presses1.01.22.50.71.60.8
Progressive ratio test 1 breakpoint0.91.22.30.71.50.8
Progressive ratio test 1 inactive lever presses0.91.33.50.51.9-0.0
Progressive ratio test 2 active lever presses0.30.40.90.50.90.3
Progressive ratio test 2 breakpoint0.40.40.90.50.90.4
Progressive ratio test 2 inactive lever presses0.10.10.4-0.00.60.3
Incentive Sensitization - Responses0.20.30.9-0.10.00.9
Incentive Sensitization - Breakpoint0.20.20.60.00.10.8
Sum of active levers in priming session hrs 5-61.00.92.20.31.5-0.7
Progressive ratio0.40.71.50.50.41.2
Food seeking constrained by brief footshock2.02.44.6-2.1-0.1-1.6
Seeking ratio, punishment vs. effort2.73.97.5-2.1-0.2-2.7
Retroperitoneal fat weight0.10.50.8-0.6-0.90.6
Reaction time number correct0.10.20.50.10.7-0.1
Reaction time mean minus median0.20.51.0-0.6-1.00.1
Reaction time mean minus median AUC0.10.20.4-0.6-0.5-0.2
Reaction time num false alarms0.71.11.11.0-1.01.0
Reaction time num false alarms AUC0.91.32.11.4-0.91.1
Reaction time trials correct on left0.10.20.50.10.7-0.1
Reaction time trials on left0.10.10.40.10.6-0.1
Reaction time mean0.81.31.7-0.9-1.31.2
Reaction time mean AUC0.50.81.1-1.0-1.00.6
Median of all reaction times0.91.32.2-0.9-1.01.5
Reaction time omissions0.40.61.3-0.1-1.10.8
Reaction time false alarm rate1.11.41.91.4-1.21.0
Reaction time premature initiation rate1.11.54.1-0.6-2.0-0.0
Reaction time premature initiations0.50.92.3-0.6-1.5-0.2
Std. dev. reaction times0.30.61.6-0.5-1.30.1
Reaction time trials completed0.10.10.40.10.6-0.1
Reaction time trials AUC0.10.10.20.20.5-0.0
Run reversals in cocaine runway, females1.21.22.8-0.5-0.71.7
Run reversals in cocaine runway, males1.01.02.11.40.1-1.0
Latency to leave start box in cocaine runway1.71.93.61.01.91.0
Latency to leave start box in cocaine runway, F3.03.46.91.42.61.2
Latency to leave start box in cocaine runway, M0.10.10.2-0.2-0.5-0.1
Std. dev. time between licks in bursts1.11.53.2-1.80.01.2
Total sessions with >9 infusions0.70.92.4-0.31.60.2
Short access day 1 total inactive lever presses0.91.22.31.51.20.1
Short access day 10 total inactive lever presses0.20.61.10.5-0.6-1.0
Short access day 1 total infusions0.91.23.30.11.80.4
Short access day 10 total infusions0.81.13.10.21.80.1
Short access total infusions0.60.82.2-0.31.50.3
Short access day 1 locomotion0.40.50.80.80.1-0.9
Short access day 10 total locomotion0.40.71.50.80.21.2
Short access total locomotion0.20.20.4-0.30.6-0.4
One hour access (0.3 mA shock)0.40.50.8-0.60.6-0.9
Compulsive drug intake0.20.30.5-0.70.10.5
One hour access (shock baseline)0.30.50.80.90.5-0.7
Social response proportion0.20.20.3-0.6-0.5-0.1
Social responses0.70.91.9-1.4-0.6-0.6
Social time0.10.10.20.4-0.3-0.3
Soleus weight1.33.79.93.1-0.4-1.1
Bone: stiffness0.00.10.2-0.10.50.1
Tibialis anterior weight2.27.415.74.02.5-0.3
Time to tail flick, vehicle, before self-admin2.02.12.51.61.41.4
Time to tail flick, vehicle, after self-admin2.02.63.31.21.71.8
Time to tail flick, test, before self-admin1.31.43.81.9-0.20.6
Time to tail flick, test, after self-admin1.11.11.81.41.00.6
Delta time to tail flick, vehicle, before/after SA0.20.20.30.30.60.4
Delta time to tail flick, test, before/after SA0.40.40.9-0.40.90.6
Tibia length0.20.71.20.80.41.1
Ambulatory time before self-admin0.60.92.60.20.1-1.6
Ambulatory time after self-admin0.81.01.50.9-0.8-1.2
Bone: tissue strength1.41.42.0-1.0-1.4-1.1
Total heroin consumption0.91.12.4-0.71.50.6
Bone: trabecular number0.81.42.8-0.9-0.7-1.7
Bone: trabecular spacing1.62.22.41.51.61.4
Bone: trabecular thickness0.81.01.2-1.0-1.1-1.0
Bone: trabecular tissue density0.20.30.4-0.60.5-0.5
Water consumed over 24 hours1.72.34.51.0-1.2-2.1
Number of responses in last shaping day1.11.23.01.7-0.5-0.6