Dennd10

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Dennd10 0.02 0.02 4.2e-03 0.02 0.02 0.01 0.02 1.2e-03 8.7e-04 2.1e-02 1.4e-03
2 Adipose gene expression Dennd10 0.03 0.02 1.9e-04 0.04 0.03 0.03 0.04 8.9e-05 2.0e-04 1.0e-04 8.4e-05
3 Brain mRNA stability Dennd10 0.04 0.02 3.3e-03 0.02 0.02 0.01 0.01 2.5e-03 6.3e-03 2.3e-02 2.5e-02
4 IL gene expression Dennd10 0.16 0.11 9.0e-03 0.11 0.1 0.08 0.08 1.4e-03 2.9e-03 6.6e-03 6.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.54.29.6-3.1-1.71.41.4
Area under the delay curve0.30.41.0-0.0-1.00.40.5
BMI with tail18.961.2117.3-10.8-9.64.24.1
BMI without tail15.832.756.1-7.5-6.73.93.9
Body weight18.376.9145.9-12.1-10.65.04.9
Weight adjusted by age3.33.76.8-2.6-2.60.80.8
Bone surface2.13.78.0-2.8-1.91.31.3
Bone volume3.56.012.8-3.6-2.81.31.3
Breakpoint value in progressive ratio session2.62.94.8-1.8-2.21.31.3
Number of licking bursts0.91.11.9-0.7-0.41.41.3
Context. condit. distance diff. score0.10.10.1-0.20.30.30.3
Locomotion velocity, session 10.60.71.31.11.20.00.0
Locomotion distance, session 12.32.94.72.21.9-1.3-1.3
Locomotion velocity, session 21.71.92.61.61.3-1.3-1.4
Locomotion distance, session 20.40.51.1-0.1-0.2-1.0-1.0
Locomotion velocity, session 31.72.03.41.81.7-0.9-0.9
Locomotion distance, session 30.91.01.51.21.2-0.7-0.8
Stereotopy head waving bouts, day 30.60.71.31.10.5-0.9-0.8
Stereotopy head waving duration, day 30.50.61.51.20.3-0.7-0.7
Locomotion velocity, session 70.00.00.10.10.30.20.2
Locomotion distance, session 70.10.20.6-0.7-0.2-0.3-0.3
Stereotopy head waving bouts, day 70.80.81.60.4-0.31.31.3
Stereotopy head waving duration, day 71.01.22.20.6-0.11.51.5
Locomotion velocity, session 80.91.13.51.01.9-0.2-0.2
Locomotion distance, session 80.40.61.60.41.3-0.6-0.6
Degree of sensitization distance1.31.33.3-1.8-1.20.50.5
Degree of sensitization stereotypy1.31.52.6-0.2-0.91.61.6
Conditioned locomotion0.00.00.10.3-0.00.00.0
Cocaine response after cond. corrected6.57.39.62.22.2-3.1-3.1
Cocaine response after cond. not corrected5.66.26.62.32.5-2.6-2.6
Cocaine response before conditioning1.21.52.9-0.50.11.71.7
Saline control response0.40.61.01.0-0.0-0.8-0.8
Bone: connectivity density0.30.51.1-1.1-0.10.60.6
Bone: cortical apparent density7.59.913.53.73.4-2.7-2.7
Bone: cortical area8.412.723.0-4.8-4.52.02.0
Bone: cortical porosity1.41.52.6-1.6-1.21.01.0
Bone: cortical porosity2.62.84.2-2.1-1.81.41.4
Bone: cortical thickness4.06.612.9-3.6-3.50.70.7
Bone: cortical thickness2.93.39.2-2.0-3.0-0.2-0.2
Bone: cortical tissue density8.110.614.83.83.6-2.7-2.7
Condit. Reinf. active minus inactive responses0.70.82.70.51.7-0.2-0.3
Condit. Reinf. active-inactive response ratio0.80.82.50.91.6-0.1-0.1
Condit. Reinf. active responses0.30.31.1-1.10.40.10.1
Condit. Reinf. inactive responses1.51.75.2-2.3-1.10.50.5
Incentive salience index mean0.60.72.20.31.5-0.5-0.6
Condit. Reinf. lever presses0.50.61.30.21.1-0.8-0.8
Condit. Reinf. active minus inactive responses3.34.04.7-2.2-1.82.12.0
Condit. Reinf. active-inactive response ratio3.84.04.5-2.0-2.11.91.9
Condit. Reinf. active responses3.85.26.7-2.6-1.92.32.3
Condit. Reinf. inactive responses1.41.82.6-1.6-0.91.41.4
Condit. Reinf. lever presses1.72.24.2-2.1-1.51.11.1
Condit. Reinf. lever reinforcers received2.53.54.5-2.1-1.32.01.9
Conditioned reinforcement - actives3.03.05.32.22.3-1.0-0.9
Conditioned reinforcement - inactives0.20.20.60.40.8-0.1-0.2
Conditioned locomotion2.22.65.21.82.3-1.0-0.9
Patch foraging indifference point 0 sec3.25.29.8-3.1-2.91.11.1
Patch foraging indifference point AUC0.20.30.8-0.3-0.90.30.3
Delay disc. indifference point, 0s delay0.20.30.8-0.5-0.9-0.2-0.1
Delay disc. indifference point, 16s delay0.60.60.90.1-0.71.00.9
Delay disc. indifference point, 2s delay0.40.40.60.8-0.2-0.8-0.7
Delay disc. indifference point, 24s delay0.20.20.8-0.2-0.90.30.3
Delay disc. indifference point, 4s delay0.20.20.60.1-0.80.20.3
Delay disc. indifference point, 8s delay0.10.10.30.5-0.3-0.1-0.1
Indifference point function ln k0.10.20.3-0.4-0.0-0.6-0.5
Indifference point function log k0.10.20.3-0.4-0.0-0.6-0.5
Patch foraging total patch changes 0 sec4.06.411.8-3.4-3.31.21.2
Patch foraging total patch changes 12 sec3.14.06.6-2.6-2.41.31.3
Patch foraging total patch changes 18 sec1.72.24.3-2.1-1.80.90.9
Patch foraging total patch changes 24 sec0.50.61.0-1.0-0.90.70.6
Patch foraging total patch changes 6 sec3.34.88.0-2.8-2.81.31.3
Patch foraging time to switch 0 sec0.61.02.01.31.4-0.4-0.4
Patch foraging water rate 0 sec1.42.34.8-2.0-2.20.30.3
Patch foraging water rate 12 sec2.23.45.2-2.3-2.31.31.3
Patch foraging water rate 18 sec0.40.61.0-0.7-1.0-0.7-0.7
Patch foraging water rate 24 sec1.52.14.5-1.8-2.1-0.6-0.6
Patch foraging water rate 6 sec0.81.22.6-1.4-1.6-0.2-0.2
Seeking ratio, delayed vs. immediate footshock5.05.810.22.93.2-1.5-1.5
Distance traveled before self-admin2.62.84.01.70.3-2.0-2.0
Distance traveled after self-admin2.62.83.51.91.4-1.7-1.7
Extensor digitorum longus weight1.55.810.9-3.3-3.01.31.3
Bone: elastic displacement0.20.20.40.3-0.7-0.3-0.3
Bone: elastic work0.91.23.6-0.7-1.9-0.6-0.6
Bone: endosteal estimation1.53.35.6-2.4-2.11.31.3
Bone: endosteal perimeter2.75.59.3-2.7-3.01.71.7
Epididymis fat weight26.160.9112.8-10.6-8.95.15.1
Delta time in closed arm before/after self-admin0.70.71.00.30.9-1.0-1.0
Delta time in open arm before/after self-admin3.93.76.1-1.5-0.72.52.5
Diff in mean of infusions in LGA sessions0.90.91.3-0.6-0.91.11.1
Delay discount exponential model param0.30.41.2-0.01.1-0.3-0.4
Extinction: sum of active levers before priming0.70.71.3-0.40.01.11.1
Active lever presses in extinction session 60.90.82.2-1.0-1.50.30.3
Bone: final force4.67.414.1-3.8-3.71.01.0
Bone: final moment5.18.215.9-4.0-3.81.21.2
Food consumed during 24 hour testing period0.20.30.7-0.8-0.60.20.1
Glucose8.012.014.8-3.6-3.93.23.2
Heart weight6.89.715.8-3.7-4.02.12.1
Delay discount hyperbolic model param0.20.20.9-0.21.0-0.1-0.2
Intermittent access intake day 1-15 change0.20.20.3-0.3-0.30.50.5
Intermittent access intake escalation0.00.00.10.2-0.0-0.2-0.2
Intermittent access intake escalation 20.20.20.3-0.5-0.50.50.5
Intermitt. access day 1 inactive lever presses0.70.81.5-1.2-1.00.60.6
Intermitt. access day 15 inactive lever presses0.60.72.2-0.7-1.50.10.0
Intermitt. access escalation Index0.10.10.2-0.10.50.00.0
Intermittent access day 1 total infusions0.30.40.70.80.8-0.3-0.3
Intermittent access day 15 total infusions0.30.30.60.80.6-0.4-0.4
Intermittent access terminal intake (last 3 days)0.10.10.20.50.2-0.0-0.0
Intermittent access total infusions0.50.61.11.10.9-0.3-0.4
Intermittent access day 1 locomotion2.83.03.91.92.0-1.4-1.5
Intermittent access day 15 total locomotion0.30.30.6-0.3-0.20.80.7
Intermittent access total locomotion1.31.52.01.31.4-1.0-1.0
Intermittent access standard deviation0.50.51.10.10.01.01.0
Left kidney weight5.314.930.8-5.5-5.30.30.3
Right kidney weight5.114.228.9-5.4-5.3-0.1-0.1
Cocaine induced anxiety2.63.04.82.22.1-1.2-1.2
Post-drug Anxiety0.40.40.90.91.0-0.1-0.1
Baseline Anxiety2.32.43.0-1.7-1.21.61.6
Tail length1.23.74.3-2.1-2.11.71.8
Length with tail2.69.516.1-4.0-3.62.12.1
Length without tail2.86.013.0-3.6-2.91.11.1
Times rat made contact with spout1.01.12.4-1.5-1.20.60.6
Lifetime Intake0.91.01.91.41.1-0.7-0.7
Liver weight, left4.97.914.3-3.8-3.12.02.0
Liver weight, right8.414.025.9-5.1-4.02.72.7
Locomotor activity0.00.00.20.10.40.00.0
Locomotor testing distance0.50.90.91.00.9-0.9-1.0
Locomotor testing rearing0.20.30.40.6-0.3-0.6-0.7
Locomotion in novel chamber0.81.01.8-0.0-0.6-1.3-1.3
Locomotion in novel chamber post-restriction2.12.54.21.20.4-2.1-2.1
Fecal boli incidents, locomotor time 11.21.32.2-0.7-0.71.51.4
Change in fecal boli incidents, locomotor task0.30.31.0-1.0-0.30.00.0
Time >=10cm from walls, locomotor time 10.20.20.20.20.50.50.4
Bouts of movement, locomotor time 10.60.60.8-0.9-0.50.80.9
Total resting periods, locomotor time 10.30.40.6-0.8-0.60.40.5
Rest time, locomotor task time 10.91.01.8-0.2-0.5-1.3-1.4
Distance moved, locomotor task time 10.10.10.40.60.40.10.1
Vertical activity count, locomotor time 10.40.50.90.90.9-0.4-0.3
Time >=10cm from walls, locomotor time 20.10.10.2-0.5-0.2-0.1-0.1
Bouts of movement, locomotor time 20.10.10.20.5-0.0-0.3-0.2
Total resting periods, locomotor time 20.10.10.30.6-0.0-0.4-0.3
Rest time, locomotor task time 20.10.10.20.50.1-0.4-0.4
Distance moved, locomotor task time 20.10.10.20.10.3-0.4-0.4
Vertical activity count, locomotor time 20.10.10.40.20.6-0.2-0.3
Light reinforcement 10.61.22.10.50.5-1.4-1.5
Light reinforcement 20.10.10.20.40.5-0.0-0.1
Bone: marrow area1.73.66.1-2.5-2.21.31.3
Bone: maximum diameter5.910.816.4-4.1-3.62.62.6
Bone: maximum force3.76.413.3-3.6-3.30.80.8
Bone: maximum moment4.06.914.5-3.8-3.31.01.0
Mean time between licks in bursts0.60.81.3-0.70.61.11.2
Mean num. licks in bursts0.60.81.6-0.1-0.2-1.3-1.2
Cd content in liver0.80.92.10.71.5-0.7-0.7
Co content in liver0.50.61.20.00.1-1.1-1.1
Cu content in liver0.20.20.5-0.5-0.70.20.2
Fe content in liver0.00.00.0-0.10.10.20.2
K content in liver0.20.20.9-0.3-0.90.10.1
Mg content in liver0.40.41.5-0.0-1.2-0.0-0.0
Mn content in liver0.20.30.4-0.2-0.5-0.6-0.6
Na content in liver2.42.65.7-1.3-2.41.21.2
Rb content in liver0.30.31.11.10.3-0.3-0.3
Se content in liver0.00.10.20.40.1-0.1-0.1
Sr content in liver5.95.47.92.81.6-2.4-2.4
Zn content in liver1.31.42.50.7-0.6-1.6-1.6
Bone: minimum diameter5.19.515.3-3.9-3.72.12.1
Time in familiar zone, hab. session 11.51.43.1-1.1-1.80.80.8
Time in novel zone, hab. session 11.81.75.01.42.20.00.0
Total zone transitions, hab. session 10.30.40.70.60.1-0.8-0.8
Total locomotion distance, hab. session 10.10.10.30.10.50.20.2
Locomotion velocity, hab. session 10.00.00.2-0.00.40.00.1
Time in familiar zone, hab. session 21.21.22.2-0.50.51.51.5
Time in novel zone, hab. session 20.30.30.40.2-0.5-0.6-0.6
Total zone transitions, hab. session 20.10.20.30.1-0.3-0.5-0.5
Total locomotion distance, hab. session 20.30.40.8-0.9-0.70.40.5
Locomotion velocity, hab. session 20.30.40.8-0.9-0.90.30.3
Novel to familiar place preference ratio0.50.50.8-0.50.40.90.9
Novelty place preference0.40.40.7-0.30.40.80.8
Time in novel zone, NPP test1.31.32.4-0.80.31.51.5
Total zone transitions, NPP test0.30.40.6-0.5-0.4-0.8-0.8
Total locomotion distance, NPP test0.10.20.3-0.4-0.0-0.5-0.5
Locomotion velocity, NPP test0.91.22.40.10.2-1.5-1.5
Intraocular pressure0.71.01.6-1.00.01.31.3
Delta distance traveled before/after self-admin0.60.62.10.61.5-0.1-0.1
Delta ambulatory time before/after self-admin0.50.62.00.41.4-0.2-0.2
Parametrial fat weight19.538.068.1-8.3-7.14.14.1
Pavlov. Cond. lever latency0.20.20.60.70.60.10.2
Pavlov. Cond. magazine entry latency0.50.71.6-1.3-0.80.50.5
Pavlov. Cond. change in total contacts3.03.25.1-2.3-1.61.61.6
Pavlov. Cond. index score0.91.12.4-1.5-1.10.70.6
Pavlov. Cond. latency score0.70.91.9-1.4-1.00.60.6
Pavlov. Cond. lever contacts0.81.01.7-1.3-1.10.70.7
Pavlov. Cond. magazine entry number0.81.02.21.50.9-0.8-0.7
Pavlov. Cond. intertrial magazine entries0.81.02.9-1.7-1.0-0.1-0.0
Pavlov. Cond. lever-magazine prob. diff.1.11.32.7-1.7-1.10.90.8
Pavlov. Cond. response bias0.50.61.4-1.2-0.90.40.4
Pavlov. Cond. lever latency1.62.14.02.00.9-1.3-1.3
Pavlov. Cond. magazine entry latency0.40.51.0-0.20.40.91.0
Pavlov. Cond. change in total contacts0.71.01.3-1.2-0.51.11.1
Pavlov. Cond. index score0.50.71.1-1.1-0.20.90.9
Pavlov. Cond. latency score0.50.61.1-1.0-0.30.70.8
Pavlov. Cond. lever contacts1.01.32.4-1.5-0.81.01.1
Pavlov. Cond. magazine entry number0.10.10.20.2-0.2-0.4-0.5
Pavlov. Cond. intertrial magazine entries1.62.14.8-1.9-2.2-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.8-0.10.70.8
Pavlov. Cond. response bias1.21.72.2-1.5-0.41.51.5
Time in closed arm before self-admin0.10.10.30.50.00.30.3
Time in closed arm after self-admin0.90.91.11.00.7-1.0-1.0
Time in open arm before self-admin0.40.41.01.00.7-0.4-0.4
Time in open arm after self-admin2.02.34.3-0.6-0.42.12.1
Bone: periosteal estimation5.310.919.7-4.4-4.11.81.8
Bone: periosteal perimeter7.512.521.4-4.3-4.62.22.2
Bone: post-yield work0.91.23.1-1.8-0.70.70.7
Progressive ratio test 1 active lever presses1.21.32.01.41.1-1.0-1.0
Progressive ratio test 1 breakpoint1.01.11.91.40.9-0.9-0.9
Progressive ratio test 1 inactive lever presses0.40.40.70.60.9-0.5-0.6
Progressive ratio test 2 active lever presses0.10.10.5-0.1-0.7-0.1-0.0
Progressive ratio test 2 breakpoint0.10.10.5-0.2-0.7-0.2-0.1
Progressive ratio test 2 inactive lever presses0.00.00.1-0.40.00.10.2
Incentive Sensitization - Responses1.01.02.1-1.1-1.40.50.6
Incentive Sensitization - Breakpoint0.91.01.8-1.1-1.30.60.7
Sum of active levers in priming session hrs 5-60.10.10.2-0.2-0.00.40.4
Progressive ratio2.42.75.02.21.4-1.4-1.4
Food seeking constrained by brief footshock3.64.58.62.92.8-0.8-0.8
Seeking ratio, punishment vs. effort0.10.10.30.00.50.20.2
Retroperitoneal fat weight29.295.8175.4-13.2-11.36.36.3
Reaction time number correct0.71.01.2-0.9-1.11.11.0
Reaction time mean minus median0.20.20.40.6-0.2-0.5-0.5
Reaction time mean minus median AUC0.60.80.91.0-0.7-0.9-0.9
Reaction time num false alarms0.20.30.9-0.9-0.2-0.2-0.2
Reaction time num false alarms AUC0.30.41.2-1.1-0.6-0.1-0.1
Reaction time trials correct on left0.71.01.2-0.9-1.11.11.0
Reaction time trials on left0.71.01.2-0.9-1.11.11.0
Reaction time mean1.31.84.72.21.3-0.7-0.7
Reaction time mean AUC1.82.45.92.41.3-1.0-1.0
Median of all reaction times1.72.35.72.41.5-0.8-0.8
Reaction time omissions0.10.20.30.30.50.30.3
Reaction time false alarm rate0.10.20.5-0.70.1-0.4-0.4
Reaction time premature initiation rate0.30.40.50.60.4-0.7-0.7
Reaction time premature initiations0.00.00.1-0.0-0.4-0.1-0.2
Std. dev. reaction times0.10.10.40.6-0.0-0.2-0.2
Reaction time trials completed0.71.01.2-0.9-1.11.11.0
Reaction time trials AUC1.01.41.7-1.2-1.31.21.1
Run reversals in cocaine runway, females0.40.40.50.50.40.70.7
Run reversals in cocaine runway, males2.42.33.51.40.6-1.9-1.9
Latency to leave start box in cocaine runway0.80.91.70.2-0.51.31.3
Latency to leave start box in cocaine runway, F0.80.91.3-0.4-0.71.21.2
Latency to leave start box in cocaine runway, M0.20.20.30.6-0.30.40.4
Std. dev. time between licks in bursts0.60.72.50.61.60.0-0.0
Total sessions with >9 infusions1.82.03.11.20.6-1.7-1.8
Short access day 1 total inactive lever presses0.60.71.90.41.4-0.6-0.6
Short access day 10 total inactive lever presses1.21.42.5-1.6-1.4-0.7-0.7
Short access day 1 total infusions1.71.82.01.31.2-1.4-1.4
Short access day 10 total infusions1.21.33.01.71.2-0.6-0.6
Short access total infusions1.82.13.21.81.3-1.3-1.3
Short access day 1 locomotion0.60.60.80.90.7-0.8-0.9
Short access day 10 total locomotion0.40.50.80.90.9-0.4-0.4
Short access total locomotion3.43.54.32.11.3-2.0-2.0
One hour access (0.3 mA shock)0.10.10.30.40.60.30.3
Compulsive drug intake0.10.10.4-0.60.2-0.10.0
One hour access (shock baseline)0.40.41.11.00.8-0.2-0.3
Social response proportion0.20.20.7-0.90.2-0.1-0.1
Social responses2.12.74.7-2.2-1.51.41.3
Social time0.20.20.3-0.5-0.30.50.6
Soleus weight1.44.010.0-2.5-3.2-0.1-0.1
Bone: stiffness1.42.35.0-2.2-2.00.30.3
Tibialis anterior weight0.20.81.5-1.2-1.00.70.6
Time to tail flick, vehicle, before self-admin0.50.50.8-0.9-0.10.80.8
Time to tail flick, vehicle, after self-admin0.50.50.6-0.7-0.80.70.7
Time to tail flick, test, before self-admin1.91.92.31.50.9-1.5-1.5
Time to tail flick, test, after self-admin0.60.60.9-0.8-0.20.90.9
Delta time to tail flick, vehicle, before/after SA1.31.33.5-0.8-1.90.70.7
Delta time to tail flick, test, before/after SA3.83.44.9-2.2-1.12.02.0
Tibia length0.20.51.2-1.1-0.80.30.4
Ambulatory time before self-admin1.61.72.61.3-0.0-1.6-1.6
Ambulatory time after self-admin3.03.34.32.11.7-1.7-1.7
Bone: tissue strength0.20.20.30.30.50.50.5
Total heroin consumption3.54.17.4-2.3-2.71.31.3
Bone: trabecular number1.62.55.1-2.2-1.41.21.2
Bone: trabecular spacing1.41.94.21.82.0-0.2-0.2
Bone: trabecular thickness7.99.516.7-4.1-3.91.71.7
Bone: trabecular tissue density1.52.13.91.52.0-1.1-1.1
Water consumed over 24 hours0.10.20.3-0.1-0.4-0.5-0.5
Number of responses in last shaping day0.70.71.11.11.0-0.6-0.6