Ddb1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Ddb1 0.13 0.06 1.4e-06 0.03 0.04 0.03 0.02 8.4e-04 8.3e-05 3.1e-04 1.1e-03
2 PL mRNA stability Ddb1 0.06 0.05 4.2e-03 0.02 0.01 0.01 0.01 4.0e-03 2.3e-02 9.0e-03 2.9e-02
3 NAcc mRNA stability Ddb1 0.03 0.02 6.5e-04 0.04 0.02 0.03 0.03 2.4e-05 8.0e-04 3.4e-04 7.2e-05
4 Brain mRNA stability Ddb1 0.09 0.04 3.7e-10 0.11 0.1 0.11 0.11 1.1e-10 1.3e-09 2.6e-10 3.4e-10

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.40.7-0.6-0.6-0.8-0.1
Area under the delay curve0.30.30.9-0.1-0.5-1.0-0.1
BMI with tail1.23.810.41.8-1.3-0.33.2
BMI without tail1.02.14.51.80.10.62.1
Body weight1.45.813.23.10.60.23.6
Weight adjusted by age2.52.94.42.10.61.52.1
Bone surface0.20.31.00.3-0.4-1.00.3
Bone volume0.30.51.5-0.3-0.7-1.2-0.3
Breakpoint value in progressive ratio session3.13.44.62.11.91.91.3
Number of licking bursts0.10.10.40.2-0.2-0.6-0.1
Context. condit. distance diff. score0.10.10.20.0-0.4-0.40.2
Locomotion velocity, session 10.40.51.5-0.10.01.20.6
Locomotion distance, session 10.81.02.3-0.10.11.21.5
Locomotion velocity, session 21.11.23.70.60.70.71.9
Locomotion distance, session 21.01.32.80.30.61.41.7
Locomotion velocity, session 30.70.81.5-0.4-1.1-1.20.7
Locomotion distance, session 30.30.30.6-0.3-0.2-0.7-0.8
Stereotopy head waving bouts, day 30.81.02.3-0.9-1.5-0.60.7
Stereotopy head waving duration, day 30.40.50.80.0-0.9-0.60.9
Locomotion velocity, session 70.30.30.9-0.2-0.4-1.0-0.2
Locomotion distance, session 70.10.10.3-0.2-0.4-0.60.1
Stereotopy head waving bouts, day 70.10.10.30.6-0.3-0.10.4
Stereotopy head waving duration, day 70.60.71.61.30.40.21.0
Locomotion velocity, session 80.40.51.11.10.80.5-0.0
Locomotion distance, session 80.20.20.4-0.4-0.6-0.10.6
Degree of sensitization distance0.70.71.7-0.2-1.0-0.11.3
Degree of sensitization stereotypy0.50.51.61.30.30.20.7
Conditioned locomotion0.50.61.00.90.60.51.0
Cocaine response after cond. corrected0.20.20.50.1-0.30.70.6
Cocaine response after cond. not corrected0.30.30.5-0.7-0.70.60.2
Cocaine response before conditioning0.40.51.3-1.1-0.2-0.1-0.9
Saline control response1.62.12.71.61.41.31.4
Bone: connectivity density0.10.20.70.2-0.3-0.30.8
Bone: cortical apparent density0.40.51.30.31.10.70.6
Bone: cortical area0.10.20.8-0.90.2-0.2-0.2
Bone: cortical porosity0.60.61.21.11.00.60.0
Bone: cortical porosity1.31.42.51.61.31.00.5
Bone: cortical thickness1.82.96.00.82.51.91.1
Bone: cortical thickness0.40.51.60.11.30.60.0
Bone: cortical tissue density0.60.81.60.51.30.80.7
Condit. Reinf. active minus inactive responses0.91.02.20.10.31.51.3
Condit. Reinf. active-inactive response ratio1.61.84.70.50.82.21.2
Condit. Reinf. active responses0.60.71.6-0.7-0.20.91.3
Condit. Reinf. inactive responses0.81.01.9-1.4-1.2-0.90.0
Incentive salience index mean0.40.50.9-0.7-0.20.71.0
Condit. Reinf. lever presses0.50.71.7-1.3-0.7-0.8-0.0
Condit. Reinf. active minus inactive responses0.30.41.1-1.0-0.40.5-0.2
Condit. Reinf. active-inactive response ratio0.40.41.40.0-1.2-0.50.2
Condit. Reinf. active responses0.20.30.8-0.9-0.10.5-0.2
Condit. Reinf. inactive responses0.50.61.4-1.20.40.4-0.8
Condit. Reinf. lever presses0.10.10.40.20.0-0.10.6
Condit. Reinf. lever reinforcers received0.10.20.6-0.40.20.70.2
Conditioned reinforcement - actives0.90.91.6-1.2-0.8-0.1-1.3
Conditioned reinforcement - inactives1.51.73.2-1.8-1.4-1.1-0.7
Conditioned locomotion2.73.35.5-2.4-1.9-1.5-1.2
Patch foraging indifference point 0 sec0.10.20.30.30.60.30.5
Patch foraging indifference point AUC0.50.61.2-0.10.70.71.1
Delay disc. indifference point, 0s delay0.80.92.30.1-1.5-1.10.2
Delay disc. indifference point, 16s delay0.20.20.3-0.4-0.3-0.60.1
Delay disc. indifference point, 2s delay1.21.42.5-0.8-1.3-1.6-0.7
Delay disc. indifference point, 24s delay0.10.10.2-0.4-0.1-0.40.1
Delay disc. indifference point, 4s delay0.30.31.00.3-0.3-1.00.3
Delay disc. indifference point, 8s delay0.20.20.70.3-0.3-0.8-0.3
Indifference point function ln k1.62.34.2-1.0-2.1-1.5-1.2
Indifference point function log k1.62.34.2-1.0-2.1-1.5-1.2
Patch foraging total patch changes 0 sec0.20.30.70.30.80.50.4
Patch foraging total patch changes 12 sec3.44.35.31.92.31.82.3
Patch foraging total patch changes 18 sec0.30.40.90.10.80.90.5
Patch foraging total patch changes 24 sec2.32.87.31.31.40.62.7
Patch foraging total patch changes 6 sec0.10.20.30.30.6-0.30.4
Patch foraging time to switch 0 sec0.20.30.40.6-0.4-0.50.3
Patch foraging water rate 0 sec0.50.92.3-1.50.10.0-1.1
Patch foraging water rate 12 sec0.50.71.3-1.1-0.8-0.4-1.0
Patch foraging water rate 18 sec0.60.81.5-1.2-0.6-0.7-1.0
Patch foraging water rate 24 sec0.30.41.3-0.4-0.2-0.4-1.1
Patch foraging water rate 6 sec0.30.40.8-0.8-0.4-0.2-0.9
Seeking ratio, delayed vs. immediate footshock0.30.40.6-0.8-0.5-0.60.4
Distance traveled before self-admin1.01.12.01.41.00.60.9
Distance traveled after self-admin0.00.00.10.10.20.10.0
Extensor digitorum longus weight2.811.224.53.72.11.55.0
Bone: elastic displacement0.40.51.3-0.10.71.1-0.3
Bone: elastic work1.21.52.21.01.51.50.9
Bone: endosteal estimation3.06.510.0-2.2-3.2-3.0-1.5
Bone: endosteal perimeter4.18.612.4-2.3-3.5-3.5-2.1
Epididymis fat weight1.33.16.4-1.3-1.9-2.5-0.7
Delta time in closed arm before/after self-admin3.43.35.42.01.41.42.3
Delta time in open arm before/after self-admin0.70.61.00.21.00.81.0
Diff in mean of infusions in LGA sessions2.83.14.02.02.01.71.2
Delay discount exponential model param0.30.41.00.20.61.00.1
Extinction: sum of active levers before priming2.22.23.51.91.40.91.6
Active lever presses in extinction session 62.02.03.61.41.91.20.8
Bone: final force0.10.20.8-0.00.30.20.9
Bone: final moment0.10.20.7-0.10.30.30.9
Food consumed during 24 hour testing period0.30.40.9-0.7-0.20.1-1.0
Glucose2.33.46.5-1.7-2.5-1.4-1.5
Heart weight0.40.61.4-0.2-1.2-0.9-0.1
Delay discount hyperbolic model param0.40.41.20.20.71.10.1
Intermittent access intake day 1-15 change0.90.91.9-1.30.30.2-1.4
Intermittent access intake escalation0.60.61.3-1.10.30.3-1.0
Intermittent access intake escalation 20.40.40.8-0.50.90.6-0.4
Intermitt. access day 1 inactive lever presses2.42.64.7-1.6-2.2-1.7-0.6
Intermitt. access day 15 inactive lever presses2.42.63.6-1.9-1.9-1.80.1
Intermitt. access escalation Index1.41.32.5-1.6-0.9-1.2-0.5
Intermittent access day 1 total infusions4.14.88.2-1.9-2.9-2.6-0.3
Intermittent access day 15 total infusions4.75.39.6-3.1-2.1-2.0-1.7
Intermittent access terminal intake (last 3 days)2.22.44.5-2.1-1.6-1.5-0.6
Intermittent access total infusions3.03.35.1-2.3-2.0-1.9-0.6
Intermittent access day 1 locomotion3.23.46.1-1.5-2.5-2.20.3
Intermittent access day 15 total locomotion1.61.73.1-1.3-1.8-1.30.4
Intermittent access total locomotion4.75.39.1-2.3-3.0-2.60.2
Intermittent access standard deviation0.50.51.4-0.10.61.2-0.3
Left kidney weight0.51.33.7-0.4-1.2-1.90.0
Right kidney weight0.20.61.6-0.3-0.9-1.30.1
Cocaine induced anxiety0.30.30.60.50.30.70.6
Post-drug Anxiety0.60.71.21.10.40.90.8
Baseline Anxiety0.91.01.91.40.70.71.0
Tail length1.13.34.72.22.21.31.4
Length with tail0.93.25.72.41.50.12.2
Length without tail0.30.61.30.80.2-0.51.1
Times rat made contact with spout0.60.71.20.51.01.10.4
Lifetime Intake2.02.23.3-1.7-1.8-1.6-0.4
Liver weight, left0.30.51.3-0.7-0.2-0.4-1.2
Liver weight, right0.30.51.5-1.2-0.70.2-0.2
Locomotor activity0.30.51.1-1.10.10.6-0.7
Locomotor testing distance0.40.71.7-1.3-0.30.7-0.5
Locomotor testing rearing0.50.71.8-1.3-0.30.7-0.8
Locomotion in novel chamber2.63.23.5-1.7-1.8-1.8-1.9
Locomotion in novel chamber post-restriction0.10.10.3-0.1-0.20.2-0.6
Fecal boli incidents, locomotor time 10.10.10.3-0.2-0.5-0.0-0.5
Change in fecal boli incidents, locomotor task0.80.81.7-0.4-1.3-0.9-0.7
Time >=10cm from walls, locomotor time 12.32.43.2-1.4-1.8-1.7-1.2
Bouts of movement, locomotor time 13.03.35.61.62.42.10.8
Total resting periods, locomotor time 11.71.93.71.21.91.50.5
Rest time, locomotor task time 10.30.30.8-0.5-0.2-0.5-0.9
Distance moved, locomotor task time 10.10.10.40.2-0.2-0.10.6
Vertical activity count, locomotor time 10.40.50.7-0.8-0.5-0.4-0.8
Time >=10cm from walls, locomotor time 20.20.20.8-0.3-0.1-0.2-0.9
Bouts of movement, locomotor time 23.63.96.01.51.22.52.4
Total resting periods, locomotor time 23.03.15.31.20.92.32.3
Rest time, locomotor task time 20.50.60.9-0.8-0.9-0.4-0.7
Distance moved, locomotor task time 20.40.51.40.71.20.3-0.1
Vertical activity count, locomotor time 20.70.81.60.61.30.8-0.7
Light reinforcement 10.30.51.0-1.0-0.20.2-0.8
Light reinforcement 22.02.63.5-1.6-1.7-1.9-1.2
Bone: marrow area3.16.810.1-2.2-3.2-3.1-1.6
Bone: maximum diameter0.40.81.7-0.9-0.8-1.3-0.5
Bone: maximum force0.30.40.9-0.1-0.4-0.81.0
Bone: maximum moment0.20.40.9-0.2-0.4-0.70.9
Mean time between licks in bursts1.11.62.90.51.01.41.7
Mean num. licks in bursts0.60.71.90.00.91.40.2
Cd content in liver0.80.81.9-1.0-0.60.1-1.4
Co content in liver0.60.71.5-0.70.50.7-1.2
Cu content in liver0.30.30.70.80.40.20.7
Fe content in liver0.10.10.20.5-0.00.10.3
K content in liver0.40.40.7-0.8-0.5-0.80.4
Mg content in liver0.80.81.6-1.3-1.1-0.50.4
Mn content in liver0.30.40.80.40.9-0.20.8
Na content in liver0.10.10.2-0.4-0.00.50.1
Rb content in liver1.31.62.7-1.6-1.3-0.9-1.0
Se content in liver0.20.20.40.30.0-0.60.6
Sr content in liver6.05.58.62.31.92.12.9
Zn content in liver2.02.25.10.31.01.72.3
Bone: minimum diameter3.36.29.5-3.1-2.8-2.4-1.4
Time in familiar zone, hab. session 10.20.20.8-0.9-0.4-0.1-0.0
Time in novel zone, hab. session 10.30.20.9-0.0-0.2-0.1-1.0
Total zone transitions, hab. session 10.70.91.60.71.31.10.7
Total locomotion distance, hab. session 10.10.10.3-0.3-0.50.00.5
Locomotion velocity, hab. session 10.30.41.10.20.20.61.1
Time in familiar zone, hab. session 20.30.31.2-0.20.10.3-1.1
Time in novel zone, hab. session 20.30.31.0-0.1-0.10.11.0
Total zone transitions, hab. session 20.60.81.6-0.30.61.30.9
Total locomotion distance, hab. session 20.30.40.7-0.9-0.20.70.7
Locomotion velocity, hab. session 20.30.41.2-1.1-0.50.40.5
Novel to familiar place preference ratio0.90.91.71.30.6-0.21.2
Novelty place preference0.70.71.41.20.4-0.41.0
Time in novel zone, NPP test1.01.02.11.50.4-0.11.3
Total zone transitions, NPP test1.21.63.10.61.21.81.3
Total locomotion distance, NPP test0.20.30.6-0.60.20.80.5
Locomotion velocity, NPP test0.20.30.7-0.80.40.60.1
Intraocular pressure0.20.20.40.60.40.60.3
Delta distance traveled before/after self-admin0.20.20.5-0.7-0.5-0.1-0.5
Delta ambulatory time before/after self-admin0.20.20.5-0.5-0.30.1-0.7
Parametrial fat weight3.26.211.7-1.8-2.7-3.4-1.6
Pavlov. Cond. lever latency0.20.31.11.10.20.2-0.2
Pavlov. Cond. magazine entry latency0.10.10.2-0.3-0.2-0.30.5
Pavlov. Cond. change in total contacts0.40.41.5-1.2-0.2-0.0-0.1
Pavlov. Cond. index score0.10.10.4-0.60.1-0.0-0.0
Pavlov. Cond. latency score0.20.20.8-0.9-0.2-0.2-0.2
Pavlov. Cond. lever contacts0.40.51.6-1.3-0.4-0.4-0.4
Pavlov. Cond. magazine entry number0.10.20.4-0.3-0.6-0.3-0.2
Pavlov. Cond. intertrial magazine entries0.50.61.0-0.80.81.0-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.60.30.20.2
Pavlov. Cond. response bias0.10.10.4-0.60.20.00.3
Pavlov. Cond. lever latency0.30.40.80.50.60.3-0.9
Pavlov. Cond. magazine entry latency2.02.34.91.21.11.32.2
Pavlov. Cond. change in total contacts0.20.30.8-0.2-0.10.40.9
Pavlov. Cond. index score0.70.93.00.70.20.41.7
Pavlov. Cond. latency score0.60.82.70.6-0.00.21.6
Pavlov. Cond. lever contacts0.30.41.0-0.10.00.61.0
Pavlov. Cond. magazine entry number3.44.18.6-2.1-1.3-1.3-2.9
Pavlov. Cond. intertrial magazine entries0.60.82.2-0.8-0.6-0.4-1.5
Pavlov. Cond. lever-magazine prob. diff.0.81.03.20.80.30.51.8
Pavlov. Cond. response bias0.60.82.40.30.30.81.5
Time in closed arm before self-admin0.50.50.8-0.4-0.6-0.9-0.9
Time in closed arm after self-admin0.10.10.1-0.0-0.2-0.3-0.4
Time in open arm before self-admin0.10.10.3-0.30.00.5-0.5
Time in open arm after self-admin0.80.81.70.31.31.20.2
Bone: periosteal estimation1.53.04.5-1.8-1.8-2.1-1.0
Bone: periosteal perimeter0.81.31.6-1.3-1.3-1.1-0.8
Bone: post-yield work4.05.48.9-1.9-2.7-3.0-1.3
Progressive ratio test 1 active lever presses1.41.52.7-1.6-0.9-1.1-1.2
Progressive ratio test 1 breakpoint1.21.32.1-1.5-0.8-0.9-1.2
Progressive ratio test 1 inactive lever presses0.40.40.8-0.2-0.8-0.60.9
Progressive ratio test 2 active lever presses2.42.63.9-2.0-1.6-1.5-1.2
Progressive ratio test 2 breakpoint3.03.35.4-2.3-1.6-1.6-1.7
Progressive ratio test 2 inactive lever presses2.52.84.4-2.1-2.0-1.7-0.4
Incentive Sensitization - Responses0.50.50.7-0.8-0.7-0.9-0.2
Incentive Sensitization - Breakpoint0.90.91.3-1.0-1.0-1.2-0.3
Sum of active levers in priming session hrs 5-60.80.81.50.61.21.00.4
Progressive ratio0.20.20.4-0.4-0.5-0.70.1
Food seeking constrained by brief footshock0.10.10.2-0.4-0.20.40.1
Seeking ratio, punishment vs. effort0.20.20.70.00.10.80.3
Retroperitoneal fat weight3.210.516.8-2.7-3.3-4.1-2.6
Reaction time number correct1.21.75.02.20.91.00.3
Reaction time mean minus median0.70.92.01.40.71.00.4
Reaction time mean minus median AUC1.31.72.81.61.21.70.2
Reaction time num false alarms0.10.10.2-0.00.40.4-0.2
Reaction time num false alarms AUC0.40.51.10.61.00.80.1
Reaction time trials correct on left1.21.75.02.20.91.00.3
Reaction time trials on left1.41.95.42.31.01.10.3
Reaction time mean0.20.20.80.20.20.90.1
Reaction time mean AUC0.10.10.5-0.2-0.00.7-0.1
Median of all reaction times0.10.10.3-0.0-0.00.50.3
Reaction time omissions0.81.01.91.41.20.9-0.1
Reaction time false alarm rate0.20.30.9-1.00.1-0.1-0.2
Reaction time premature initiation rate0.70.91.90.80.5-0.91.4
Reaction time premature initiations1.72.45.22.31.40.21.6
Std. dev. reaction times0.50.71.50.90.81.2-0.2
Reaction time trials completed1.41.95.42.31.01.10.3
Reaction time trials AUC1.11.64.52.10.81.00.3
Run reversals in cocaine runway, females0.40.40.60.1-0.6-0.80.7
Run reversals in cocaine runway, males1.01.01.9-1.3-0.1-0.6-1.4
Latency to leave start box in cocaine runway2.42.65.0-1.2-1.7-2.2-1.0
Latency to leave start box in cocaine runway, F0.60.61.3-0.6-0.8-1.1-0.4
Latency to leave start box in cocaine runway, M2.92.73.7-1.1-1.5-1.9-1.9
Std. dev. time between licks in bursts0.20.30.9-1.0-0.2-0.1-0.4
Total sessions with >9 infusions1.81.94.2-1.2-2.0-1.4-0.4
Short access day 1 total inactive lever presses1.61.72.8-1.3-1.7-1.4-0.6
Short access day 10 total inactive lever presses0.80.91.3-1.1-1.2-0.6-0.7
Short access day 1 total infusions0.50.61.3-0.6-1.1-0.8-0.2
Short access day 10 total infusions2.73.05.3-1.4-2.3-2.10.2
Short access total infusions0.91.02.1-0.8-1.5-1.20.2
Short access day 1 locomotion0.30.40.6-0.3-0.8-0.70.6
Short access day 10 total locomotion1.51.73.5-0.7-1.9-1.40.8
Short access total locomotion1.41.42.7-0.6-1.6-1.21.1
One hour access (0.3 mA shock)4.14.88.7-2.9-2.1-1.8-1.6
Compulsive drug intake3.43.44.92.01.92.21.2
One hour access (shock baseline)5.76.610.6-3.3-2.1-2.3-2.4
Social response proportion0.20.30.6-0.10.0-0.6-0.8
Social responses0.30.41.00.11.00.3-0.8
Social time1.11.42.41.11.51.5-0.0
Soleus weight1.95.410.3-3.2-1.6-1.1-2.8
Bone: stiffness0.10.20.7-0.4-0.2-0.8-0.1
Tibialis anterior weight5.920.332.05.03.73.35.7
Time to tail flick, vehicle, before self-admin0.60.60.90.4-0.9-0.90.7
Time to tail flick, vehicle, after self-admin0.70.81.81.40.10.11.1
Time to tail flick, test, before self-admin0.50.51.00.2-0.9-1.00.4
Time to tail flick, test, after self-admin0.10.10.4-0.30.20.1-0.6
Delta time to tail flick, vehicle, before/after SA0.20.20.30.40.50.60.1
Delta time to tail flick, test, before/after SA1.21.12.3-0.11.51.5-0.1
Tibia length0.20.71.51.20.3-0.21.0
Ambulatory time before self-admin0.60.61.00.91.00.60.6
Ambulatory time after self-admin0.40.40.5-0.7-0.7-0.7-0.3
Bone: tissue strength0.60.61.3-1.2-0.4-0.3-0.8
Total heroin consumption5.76.79.83.12.82.41.9
Bone: trabecular number0.20.30.6-0.2-0.5-0.80.5
Bone: trabecular spacing0.60.82.5-0.10.81.6-0.1
Bone: trabecular thickness0.91.11.4-1.0-0.8-1.2-1.1
Bone: trabecular tissue density1.31.94.3-1.5-0.6-0.7-2.1
Water consumed over 24 hours0.20.20.60.40.8-0.10.1
Number of responses in last shaping day0.20.20.40.30.40.60.5