Cyp2c6v1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Cyp2c6v1 0.38 0.08 0.0e+00 0.41 0.4 0.4 0.41 4.7e-49 8.5e-47 7.2e-47 4.2e-48
2 Liver gene expression Cyp2c6v1 0.53 0.04 0.0e+00 0.42 0.52 0.51 0.51 1.7e-50 2.3e-66 7.9e-66 8.2e-66
3 Liver intron excision ratio chr1_247913572_247915175 0.61 0.03 0.0e+00 0.4 0.48 0.48 0.48 7.8e-47 1.4e-59 1.2e-59 2.8e-59
4 Liver isoform ratio NM_001013904.2 0.21 0.06 1.0e-15 0.14 0.15 0.15 0.13 4.0e-15 3.9e-16 3.6e-16 1.5e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.41.01.00.3-0.2-0.8
Area under the delay curve2.02.33.7-1.4-1.8-1.9-0.5
BMI with tail0.41.44.01.00.0-0.7-2.0
BMI without tail0.10.31.10.2-0.1-0.3-1.0
Body weight0.31.32.01.21.31.4-0.1
Weight adjusted by age0.40.61.60.5-0.3-0.7-1.3
Bone surface0.51.02.41.50.80.3-0.9
Bone volume0.71.33.21.81.20.6-0.5
Breakpoint value in progressive ratio session0.30.41.0-1.0-0.6-0.30.2
Number of licking bursts2.13.45.0-2.0-2.2-2.1-0.5
Context. condit. distance diff. score0.20.20.40.60.50.5-0.2
Locomotion velocity, session 14.14.46.4-2.4-2.5-2.30.3
Locomotion distance, session 11.41.82.7-1.6-1.5-1.20.9
Locomotion velocity, session 21.31.62.1-1.4-1.5-1.40.2
Locomotion distance, session 20.60.81.3-0.9-1.1-1.2-0.1
Locomotion velocity, session 30.30.40.90.00.50.70.9
Locomotion distance, session 31.71.83.50.41.41.91.3
Stereotopy head waving bouts, day 30.20.20.3-0.5-0.6-0.30.6
Stereotopy head waving duration, day 30.70.81.4-0.8-1.2-1.1-0.1
Locomotion velocity, session 70.91.01.41.11.21.10.4
Locomotion distance, session 71.31.72.51.51.61.4-0.0
Stereotopy head waving bouts, day 71.82.03.5-1.9-1.7-1.10.6
Stereotopy head waving duration, day 70.81.01.7-1.3-1.2-0.80.4
Locomotion velocity, session 80.10.10.6-0.10.1-0.00.7
Locomotion distance, session 80.10.20.4-0.2-0.5-0.6-0.1
Degree of sensitization distance0.80.81.4-0.1-0.8-1.2-1.0
Degree of sensitization stereotypy1.81.93.8-1.9-1.6-1.00.5
Conditioned locomotion0.91.02.01.41.20.8-0.3
Cocaine response after cond. corrected0.10.10.3-0.2-0.4-0.5-0.3
Cocaine response after cond. not corrected0.10.20.3-0.5-0.4-0.20.4
Cocaine response before conditioning0.70.81.7-1.1-0.40.21.3
Saline control response1.41.93.2-1.8-1.1-0.61.7
Bone: connectivity density1.01.53.41.50.5-0.4-1.8
Bone: cortical apparent density1.72.33.4-1.6-1.8-1.7-0.6
Bone: cortical area2.53.95.61.72.12.41.6
Bone: cortical porosity1.51.62.5-0.5-1.4-1.6-1.3
Bone: cortical porosity0.50.50.8-0.1-0.7-0.8-0.9
Bone: cortical thickness1.52.57.8-0.60.41.32.8
Bone: cortical thickness2.12.43.8-2.0-1.4-0.51.9
Bone: cortical tissue density2.02.73.9-1.7-2.0-1.9-0.8
Condit. Reinf. active minus inactive responses0.10.10.2-0.4-0.1-0.20.2
Condit. Reinf. active-inactive response ratio0.00.00.0-0.10.1-0.0-0.1
Condit. Reinf. active responses0.00.00.1-0.3-0.00.00.2
Condit. Reinf. inactive responses0.10.10.2-0.4-0.4-0.20.1
Incentive salience index mean0.20.20.6-0.40.10.20.8
Condit. Reinf. lever presses0.20.30.9-0.7-0.2-0.10.9
Condit. Reinf. active minus inactive responses1.21.63.11.81.40.8-0.8
Condit. Reinf. active-inactive response ratio0.70.81.41.20.60.1-1.2
Condit. Reinf. active responses1.62.23.31.51.81.80.6
Condit. Reinf. inactive responses2.12.85.40.11.32.02.3
Condit. Reinf. lever presses0.50.72.0-0.20.40.81.4
Condit. Reinf. lever reinforcers received1.01.42.01.01.41.40.8
Conditioned reinforcement - actives0.10.20.5-0.7-0.30.10.4
Conditioned reinforcement - inactives0.40.61.2-1.1-0.9-0.5-0.2
Conditioned locomotion0.20.20.4-0.5-0.10.30.7
Patch foraging indifference point 0 sec0.10.20.5-0.30.30.70.5
Patch foraging indifference point AUC2.74.08.0-2.8-2.0-1.21.6
Delay disc. indifference point, 0s delay0.80.91.90.6-0.4-1.1-1.4
Delay disc. indifference point, 16s delay1.01.11.5-1.2-1.2-1.1-0.3
Delay disc. indifference point, 2s delay1.71.83.1-0.4-1.3-1.8-1.6
Delay disc. indifference point, 24s delay2.52.84.9-2.2-1.9-1.40.8
Delay disc. indifference point, 4s delay1.71.82.8-0.9-1.5-1.7-1.1
Delay disc. indifference point, 8s delay3.13.75.3-2.2-2.3-2.20.3
Indifference point function ln k1.93.36.42.51.91.1-1.4
Indifference point function log k1.93.36.42.51.91.1-1.4
Patch foraging total patch changes 0 sec0.20.30.7-0.20.50.90.5
Patch foraging total patch changes 12 sec2.63.36.6-2.6-1.8-1.11.5
Patch foraging total patch changes 18 sec1.11.73.1-1.8-1.4-1.10.7
Patch foraging total patch changes 24 sec0.20.40.7-0.8-0.20.30.8
Patch foraging total patch changes 6 sec2.03.17.0-2.6-1.5-0.61.6
Patch foraging time to switch 0 sec0.61.31.9-1.1-1.4-1.4-0.2
Patch foraging water rate 0 sec0.51.01.51.21.21.1-0.1
Patch foraging water rate 12 sec0.30.61.00.70.91.00.2
Patch foraging water rate 18 sec0.30.50.80.70.80.90.4
Patch foraging water rate 24 sec0.20.30.40.60.60.5-0.4
Patch foraging water rate 6 sec0.00.00.00.20.10.00.0
Seeking ratio, delayed vs. immediate footshock0.40.41.10.20.81.10.0
Distance traveled before self-admin0.10.20.50.0-0.2-0.5-0.7
Distance traveled after self-admin0.20.30.60.70.3-0.1-0.6
Extensor digitorum longus weight0.10.51.40.60.40.3-1.2
Bone: elastic displacement0.50.61.10.2-0.6-1.0-0.9
Bone: elastic work0.10.10.20.4-0.2-0.40.0
Bone: endosteal estimation1.73.87.82.82.01.0-1.6
Bone: endosteal perimeter1.83.88.02.82.11.3-1.1
Epididymis fat weight0.92.95.82.41.70.9-1.5
Delta time in closed arm before/after self-admin0.40.40.80.10.40.80.9
Delta time in open arm before/after self-admin0.40.40.90.4-0.1-0.6-1.0
Diff in mean of infusions in LGA sessions0.20.20.40.70.50.30.1
Delay discount exponential model param2.12.33.51.51.81.90.5
Extinction: sum of active levers before priming0.20.20.50.10.50.70.4
Active lever presses in extinction session 61.41.43.10.1-1.0-1.7-1.3
Bone: final force0.50.81.30.60.81.10.9
Bone: final moment0.61.01.60.91.01.30.8
Food consumed during 24 hour testing period0.50.71.6-1.0-0.30.41.3
Glucose0.60.91.80.61.11.30.6
Heart weight1.42.13.71.21.81.90.3
Delay discount hyperbolic model param1.82.03.21.21.61.80.7
Intermittent access intake day 1-15 change0.40.81.61.31.00.7-0.1
Intermittent access intake escalation0.61.22.31.51.20.8-0.4
Intermittent access intake escalation 20.70.81.71.30.90.4-0.6
Intermitt. access day 1 inactive lever presses0.00.20.50.2-0.2-0.7-0.2
Intermitt. access day 15 inactive lever presses0.20.50.70.70.80.80.4
Intermitt. access escalation Index0.40.50.70.80.80.60.5
Intermittent access day 1 total infusions0.10.20.3-0.4-0.4-0.5-0.5
Intermittent access day 15 total infusions1.01.52.31.31.51.5-0.1
Intermittent access terminal intake (last 3 days)0.30.40.60.60.80.8-0.1
Intermittent access total infusions0.10.20.30.30.50.50.0
Intermittent access day 1 locomotion0.40.50.80.80.70.5-0.9
Intermittent access day 15 total locomotion0.30.60.7-0.9-0.8-0.7-0.6
Intermittent access total locomotion0.40.50.7-0.4-0.6-0.8-0.8
Intermittent access standard deviation0.30.70.80.70.90.90.9
Left kidney weight0.20.91.9-0.50.41.11.4
Right kidney weight0.20.71.3-0.70.31.21.0
Cocaine induced anxiety0.50.71.71.00.4-0.0-1.3
Post-drug Anxiety1.01.11.91.41.00.7-1.0
Baseline Anxiety0.81.01.80.61.11.30.8
Tail length0.31.32.60.41.11.61.1
Length with tail0.52.13.9-0.01.12.01.8
Length without tail0.30.81.5-0.00.71.11.2
Times rat made contact with spout0.30.30.4-0.6-0.6-0.60.4
Lifetime Intake0.10.10.10.30.40.2-0.2
Liver weight, left0.10.20.30.30.50.50.3
Liver weight, right0.40.70.91.01.00.8-0.5
Locomotor activity0.20.31.0-0.1-0.00.31.0
Locomotor testing distance0.10.20.5-0.2-0.10.40.7
Locomotor testing rearing0.20.40.70.80.50.4-0.6
Locomotion in novel chamber1.72.25.81.60.6-0.1-2.4
Locomotion in novel chamber post-restriction0.20.31.0-0.4-0.10.21.0
Fecal boli incidents, locomotor time 10.10.20.4-0.2-0.5-0.6-0.0
Change in fecal boli incidents, locomotor task0.30.30.60.10.50.70.8
Time >=10cm from walls, locomotor time 13.23.48.7-0.40.92.02.9
Bouts of movement, locomotor time 11.82.02.7-1.4-1.6-1.6-0.7
Total resting periods, locomotor time 12.32.63.8-1.9-1.9-1.7-0.2
Rest time, locomotor task time 11.72.23.7-1.3-1.7-1.9-0.7
Distance moved, locomotor task time 12.03.06.11.11.92.51.1
Vertical activity count, locomotor time 10.71.63.50.71.41.90.6
Time >=10cm from walls, locomotor time 20.40.61.8-0.40.10.71.3
Bouts of movement, locomotor time 23.45.48.1-2.6-2.8-2.6-0.2
Total resting periods, locomotor time 23.45.98.8-2.8-3.0-2.60.0
Rest time, locomotor task time 22.02.63.8-1.9-1.9-1.7-0.1
Distance moved, locomotor task time 22.32.84.41.62.02.10.3
Vertical activity count, locomotor time 20.30.50.80.60.80.90.2
Light reinforcement 10.20.50.7-0.5-0.8-0.8-0.8
Light reinforcement 22.13.24.9-1.9-2.2-2.10.1
Bone: marrow area1.73.77.72.81.91.0-1.6
Bone: maximum diameter2.75.09.43.12.61.9-0.4
Bone: maximum force0.20.40.70.80.60.70.2
Bone: maximum moment0.40.61.11.00.80.80.2
Mean time between licks in bursts0.20.50.90.60.81.0-0.0
Mean num. licks in bursts1.62.53.81.82.01.70.4
Cd content in liver0.50.61.3-1.1-0.8-0.40.4
Co content in liver1.61.83.20.61.41.81.3
Cu content in liver3.94.67.3-2.7-2.6-1.90.7
Fe content in liver1.51.83.2-1.8-1.6-1.20.5
K content in liver1.41.32.1-1.3-1.4-1.20.2
Mg content in liver1.21.22.0-1.2-1.4-1.2-0.2
Mn content in liver7.17.811.7-2.9-3.4-3.0-1.3
Na content in liver1.51.72.7-1.6-1.6-1.10.4
Rb content in liver0.20.20.7-0.2-0.10.10.9
Se content in liver13.115.528.0-5.3-4.6-3.31.3
Sr content in liver0.30.30.5-0.7-0.5-0.20.6
Zn content in liver1.51.72.8-1.7-1.7-1.00.6
Bone: minimum diameter5.29.415.94.03.62.8-0.6
Time in familiar zone, hab. session 10.40.41.10.60.1-0.2-1.0
Time in novel zone, hab. session 10.20.20.3-0.5-0.5-0.40.1
Total zone transitions, hab. session 10.10.20.4-0.2-0.5-0.6-0.2
Total locomotion distance, hab. session 11.21.62.6-1.6-1.4-1.01.0
Locomotion velocity, hab. session 11.82.54.0-2.0-1.5-1.01.7
Time in familiar zone, hab. session 20.10.10.30.50.3-0.1-0.3
Time in novel zone, hab. session 20.20.20.4-0.7-0.40.00.2
Total zone transitions, hab. session 20.10.10.2-0.3-0.3-0.40.0
Total locomotion distance, hab. session 20.30.40.7-0.9-0.6-0.50.6
Locomotion velocity, hab. session 20.50.71.1-1.0-0.8-0.80.6
Novel to familiar place preference ratio1.81.93.1-0.6-1.4-1.8-1.6
Novelty place preference1.81.93.1-0.5-1.3-1.8-1.6
Time in novel zone, NPP test1.71.82.9-0.4-1.2-1.7-1.7
Total zone transitions, NPP test0.30.41.5-0.40.00.31.2
Total locomotion distance, NPP test1.82.44.4-1.9-1.2-0.52.1
Locomotion velocity, NPP test1.62.35.0-1.8-1.0-0.32.2
Intraocular pressure0.91.33.6-0.1-0.8-1.0-1.9
Delta distance traveled before/after self-admin0.80.91.91.40.90.5-0.5
Delta ambulatory time before/after self-admin1.21.53.11.81.30.9-0.5
Parametrial fat weight0.51.22.7-0.30.61.31.7
Pavlov. Cond. lever latency0.20.30.80.60.1-0.3-0.9
Pavlov. Cond. magazine entry latency1.01.33.8-0.80.20.92.0
Pavlov. Cond. change in total contacts0.40.40.8-0.30.30.80.9
Pavlov. Cond. index score0.70.92.4-1.1-0.30.41.5
Pavlov. Cond. latency score0.70.82.3-0.9-0.10.51.5
Pavlov. Cond. lever contacts0.30.40.8-0.8-0.20.20.9
Pavlov. Cond. magazine entry number0.60.71.80.2-0.5-0.9-1.3
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.6-0.5-0.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.60.82.0-1.0-0.30.31.4
Pavlov. Cond. response bias0.50.61.7-0.50.20.81.3
Pavlov. Cond. lever latency0.81.23.50.7-0.1-0.7-1.9
Pavlov. Cond. magazine entry latency0.60.71.9-0.50.20.71.4
Pavlov. Cond. change in total contacts0.50.82.0-0.00.60.91.4
Pavlov. Cond. index score1.01.33.9-0.70.20.92.0
Pavlov. Cond. latency score0.91.23.5-0.70.20.81.9
Pavlov. Cond. lever contacts0.81.13.5-0.70.20.81.9
Pavlov. Cond. magazine entry number1.41.74.91.20.1-0.7-2.2
Pavlov. Cond. intertrial magazine entries0.50.82.40.80.1-0.5-1.5
Pavlov. Cond. lever-magazine prob. diff.1.01.33.9-0.70.20.82.0
Pavlov. Cond. response bias1.01.44.3-0.70.20.92.1
Time in closed arm before self-admin0.20.30.7-0.2-0.5-0.8-0.3
Time in closed arm after self-admin0.10.10.20.0-0.1-0.20.4
Time in open arm before self-admin0.40.51.60.3-0.2-0.4-1.3
Time in open arm after self-admin0.40.41.2-0.1-0.4-0.6-1.1
Bone: periosteal estimation1.63.46.32.52.11.6-0.3
Bone: periosteal perimeter2.03.56.42.52.21.7-0.1
Bone: post-yield work0.50.71.50.90.60.4-1.2
Progressive ratio test 1 active lever presses0.30.30.7-0.4-0.4-0.6-0.8
Progressive ratio test 1 breakpoint0.30.30.6-0.4-0.5-0.6-0.8
Progressive ratio test 1 inactive lever presses0.20.30.90.2-0.0-0.4-1.0
Progressive ratio test 2 active lever presses0.30.40.7-0.4-0.6-0.8-0.6
Progressive ratio test 2 breakpoint0.30.40.7-0.5-0.6-0.8-0.5
Progressive ratio test 2 inactive lever presses0.50.81.4-0.4-0.8-1.2-1.0
Incentive Sensitization - Responses0.10.20.4-0.4-0.5-0.60.1
Incentive Sensitization - Breakpoint0.10.20.2-0.5-0.5-0.50.3
Sum of active levers in priming session hrs 5-60.10.10.2-0.2-0.4-0.4-0.1
Progressive ratio0.30.50.60.70.80.8-0.6
Food seeking constrained by brief footshock0.30.41.0-0.7-0.00.31.0
Seeking ratio, punishment vs. effort0.71.01.6-1.3-0.8-0.41.3
Retroperitoneal fat weight0.10.50.70.60.80.80.6
Reaction time number correct0.61.22.91.20.4-0.3-1.7
Reaction time mean minus median0.51.42.60.81.41.60.3
Reaction time mean minus median AUC0.41.01.80.91.21.30.0
Reaction time num false alarms0.20.30.50.50.70.6-0.2
Reaction time num false alarms AUC0.30.51.00.61.00.9-0.1
Reaction time trials correct on left0.61.22.91.20.4-0.3-1.7
Reaction time trials on left0.61.12.71.30.4-0.2-1.6
Reaction time mean0.40.61.4-0.20.40.91.2
Reaction time mean AUC0.30.51.1-0.40.20.81.0
Median of all reaction times0.30.41.2-0.5-0.10.41.1
Reaction time omissions0.60.91.20.91.11.10.6
Reaction time false alarm rate0.30.40.7-0.10.60.90.7
Reaction time premature initiation rate1.31.93.6-0.01.11.71.9
Reaction time premature initiations0.81.42.50.61.31.61.0
Std. dev. reaction times1.12.14.10.71.62.01.0
Reaction time trials completed0.61.12.71.30.4-0.2-1.6
Reaction time trials AUC0.61.12.81.20.3-0.4-1.7
Run reversals in cocaine runway, females1.41.42.7-1.0-1.4-1.6-0.3
Run reversals in cocaine runway, males0.90.92.5-1.6-0.8-0.20.6
Latency to leave start box in cocaine runway2.12.45.32.31.71.0-0.8
Latency to leave start box in cocaine runway, F2.63.06.22.51.70.8-1.5
Latency to leave start box in cocaine runway, M0.50.40.70.80.70.50.4
Std. dev. time between licks in bursts0.20.30.5-0.7-0.7-0.30.2
Total sessions with >9 infusions0.10.10.3-0.1-0.2-0.5-0.4
Short access day 1 total inactive lever presses0.70.92.00.8-0.3-1.4-1.0
Short access day 10 total inactive lever presses0.10.20.4-0.3-0.20.10.7
Short access day 1 total infusions1.01.42.5-1.1-1.3-1.6-0.4
Short access day 10 total infusions0.30.40.9-0.9-0.6-0.50.2
Short access total infusions0.20.20.5-0.5-0.5-0.7-0.2
Short access day 1 locomotion1.62.04.50.4-0.7-1.7-2.1
Short access day 10 total locomotion0.40.70.9-0.8-0.9-0.9-0.8
Short access total locomotion0.70.81.7-0.2-0.6-1.1-1.3
One hour access (0.3 mA shock)0.10.10.30.40.2-0.0-0.6
Compulsive drug intake1.41.62.41.51.41.30.6
One hour access (shock baseline)0.10.10.5-0.1-0.00.0-0.7
Social response proportion0.81.02.01.1-0.0-0.8-1.4
Social responses0.60.81.31.10.80.3-1.1
Social time0.00.00.10.00.20.30.1
Soleus weight0.31.02.01.40.90.4-1.0
Bone: stiffness0.61.01.51.01.11.20.5
Tibialis anterior weight0.10.50.80.90.60.3-0.8
Time to tail flick, vehicle, before self-admin1.71.83.1-0.9-1.5-1.8-1.1
Time to tail flick, vehicle, after self-admin0.10.10.20.50.20.0-0.2
Time to tail flick, test, before self-admin0.40.41.60.30.0-0.3-1.3
Time to tail flick, test, after self-admin0.60.61.3-0.2-0.8-1.1-0.6
Delta time to tail flick, vehicle, before/after SA0.40.40.50.50.70.70.6
Delta time to tail flick, test, before/after SA0.50.50.7-0.6-0.7-0.70.8
Tibia length0.20.40.80.20.60.70.9
Ambulatory time before self-admin0.20.40.9-0.0-0.4-0.7-0.9
Ambulatory time after self-admin0.50.61.40.90.2-0.4-1.2
Bone: tissue strength0.30.30.50.70.70.5-0.4
Total heroin consumption0.10.10.3-0.5-0.2-0.10.2
Bone: trabecular number0.20.30.70.60.1-0.2-0.8
Bone: trabecular spacing0.50.71.2-0.00.61.01.1
Bone: trabecular thickness0.81.01.81.31.20.80.0
Bone: trabecular tissue density0.40.61.31.20.60.5-0.5
Water consumed over 24 hours0.40.50.8-0.7-0.8-0.90.1
Number of responses in last shaping day0.10.10.10.20.1-0.2-0.4