Cyp2c6v1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Cyp2c6v1 0.38 0.08 0.0e+00 0.41 0.4 0.4 0.41 4.7e-49 8.5e-47 7.2e-47 3.6e-48
2 Liver gene expression Cyp2c6v1 0.53 0.04 0.0e+00 0.42 0.52 0.51 0.51 1.7e-50 2.3e-66 7.9e-66 9.0e-66
3 Liver intron excision ratio chr1_247913572_247915175 0.61 0.03 0.0e+00 0.4 0.48 0.48 0.48 7.8e-47 1.4e-59 1.3e-59 2.5e-59
4 Liver isoform ratio NM_001013904.2 0.21 0.06 1.0e-15 0.14 0.15 0.15 0.13 4.0e-15 3.9e-16 3.8e-16 1.7e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.41.0-1.00.30.20.8
Area under the delay curve1.52.33.71.4-1.81.90.5
BMI with tail0.41.44.0-1.00.00.72.0
BMI without tail0.10.31.1-0.2-0.10.31.0
Body weight0.31.32.0-1.21.3-1.40.1
Weight adjusted by age0.20.61.6-0.5-0.30.71.3
Bone surface0.51.02.4-1.50.8-0.30.9
Bone volume0.71.33.2-1.81.2-0.60.6
Breakpoint value in progressive ratio session0.20.41.01.0-0.60.3-0.2
Number of licking bursts1.13.45.02.0-2.22.10.4
Context. condit. distance diff. score0.20.20.4-0.60.5-0.50.2
Locomotion velocity, session 13.94.46.42.4-2.52.3-0.3
Locomotion distance, session 11.41.82.71.6-1.51.2-0.9
Locomotion velocity, session 21.31.62.11.4-1.51.4-0.2
Locomotion distance, session 20.60.81.30.9-1.11.20.1
Locomotion velocity, session 30.30.40.8-0.00.5-0.7-0.9
Locomotion distance, session 31.61.83.5-0.41.4-1.9-1.3
Stereotopy head waving bouts, day 30.20.20.30.5-0.60.3-0.6
Stereotopy head waving duration, day 30.60.81.40.8-1.21.10.0
Locomotion velocity, session 70.91.01.4-1.11.2-1.1-0.4
Locomotion distance, session 71.31.72.5-1.51.6-1.40.0
Stereotopy head waving bouts, day 71.82.13.51.9-1.71.1-0.6
Stereotopy head waving duration, day 70.81.01.71.3-1.20.8-0.4
Locomotion velocity, session 80.10.10.50.10.10.0-0.7
Locomotion distance, session 80.10.20.40.2-0.50.60.1
Degree of sensitization distance0.70.81.40.1-0.81.21.0
Degree of sensitization stereotypy1.71.93.81.9-1.61.0-0.6
Conditioned locomotion0.91.02.0-1.41.2-0.80.3
Cocaine response after cond. corrected0.10.10.30.2-0.40.50.3
Cocaine response after cond. not corrected0.10.20.30.5-0.40.2-0.4
Cocaine response before conditioning0.70.81.71.1-0.4-0.2-1.3
Saline control response1.41.93.21.8-1.10.6-1.7
Bone: connectivity density0.91.53.5-1.50.50.41.9
Bone: cortical apparent density1.52.33.41.6-1.81.70.5
Bone: cortical area2.43.85.6-1.72.1-2.4-1.5
Bone: cortical porosity1.51.62.50.5-1.41.61.3
Bone: cortical porosity0.50.50.80.1-0.70.80.9
Bone: cortical thickness1.52.57.90.60.4-1.3-2.8
Bone: cortical thickness2.02.53.82.0-1.40.5-1.9
Bone: cortical tissue density1.72.73.91.7-2.01.90.8
Condit. Reinf. active minus inactive responses0.10.10.20.4-0.10.2-0.2
Condit. Reinf. active-inactive response ratio0.00.00.00.10.10.00.1
Condit. Reinf. active responses0.00.00.10.3-0.0-0.0-0.2
Condit. Reinf. inactive responses0.10.10.20.4-0.40.2-0.1
Incentive salience index mean0.20.20.60.40.1-0.2-0.8
Condit. Reinf. lever presses0.20.40.90.7-0.20.1-1.0
Condit. Reinf. active minus inactive responses1.01.63.1-1.81.4-0.80.9
Condit. Reinf. active-inactive response ratio0.50.81.4-1.20.6-0.11.2
Condit. Reinf. active responses1.62.23.3-1.51.8-1.8-0.6
Condit. Reinf. inactive responses1.82.75.4-0.11.3-2.0-2.3
Condit. Reinf. lever presses0.50.72.00.20.4-0.8-1.4
Condit. Reinf. lever reinforcers received1.01.42.0-1.01.4-1.4-0.8
Conditioned reinforcement - actives0.00.20.50.7-0.3-0.1-0.4
Conditioned reinforcement - inactives0.20.61.21.1-0.90.50.2
Conditioned locomotion0.10.20.40.5-0.1-0.3-0.7
Patch foraging indifference point 0 sec0.10.20.50.30.3-0.7-0.5
Patch foraging indifference point AUC1.74.08.02.8-2.01.2-1.6
Delay disc. indifference point, 0s delay0.80.91.9-0.6-0.41.11.4
Delay disc. indifference point, 16s delay0.81.11.51.2-1.21.10.3
Delay disc. indifference point, 2s delay1.61.83.10.4-1.31.81.6
Delay disc. indifference point, 24s delay1.82.84.92.2-1.91.4-0.8
Delay disc. indifference point, 4s delay1.71.82.80.9-1.51.71.1
Delay disc. indifference point, 8s delay2.23.75.32.2-2.32.2-0.4
Indifference point function ln k1.13.36.4-2.51.9-1.11.4
Indifference point function log k1.13.36.4-2.51.9-1.11.4
Patch foraging total patch changes 0 sec0.10.30.70.20.5-0.9-0.5
Patch foraging total patch changes 12 sec2.53.36.62.6-1.81.1-1.5
Patch foraging total patch changes 18 sec0.71.73.11.8-1.41.1-0.8
Patch foraging total patch changes 24 sec0.10.40.70.8-0.2-0.3-0.8
Patch foraging total patch changes 6 sec1.83.17.02.6-1.50.6-1.6
Patch foraging time to switch 0 sec0.31.31.91.1-1.41.40.2
Patch foraging water rate 0 sec0.31.01.5-1.21.2-1.10.1
Patch foraging water rate 12 sec0.10.61.0-0.70.9-1.0-0.2
Patch foraging water rate 18 sec0.20.50.8-0.70.8-0.9-0.4
Patch foraging water rate 24 sec0.20.30.4-0.60.6-0.50.4
Patch foraging water rate 6 sec0.00.00.0-0.20.1-0.0-0.0
Seeking ratio, delayed vs. immediate footshock0.30.41.1-0.20.8-1.1-0.0
Distance traveled before self-admin0.10.20.5-0.0-0.20.50.7
Distance traveled after self-admin0.10.30.6-0.70.30.10.6
Extensor digitorum longus weight0.10.51.4-0.60.4-0.31.2
Bone: elastic displacement0.40.61.1-0.2-0.61.00.9
Bone: elastic work0.10.10.2-0.4-0.20.4-0.0
Bone: endosteal estimation1.63.87.8-2.82.0-1.01.6
Bone: endosteal perimeter1.63.88.0-2.82.1-1.31.1
Epididymis fat weight0.62.95.8-2.41.7-0.91.5
Delta time in closed arm before/after self-admin0.40.40.8-0.10.4-0.8-0.9
Delta time in open arm before/after self-admin0.30.40.9-0.4-0.10.61.0
Diff in mean of infusions in LGA sessions0.10.20.4-0.70.5-0.3-0.1
Delay discount exponential model param1.72.33.5-1.51.8-1.9-0.5
Extinction: sum of active levers before priming0.10.20.5-0.10.5-0.7-0.4
Active lever presses in extinction session 61.41.43.1-0.1-1.01.71.3
Bone: final force0.50.81.3-0.60.8-1.1-0.8
Bone: final moment0.61.01.6-0.91.0-1.3-0.8
Food consumed during 24 hour testing period0.40.71.71.0-0.3-0.4-1.3
Glucose0.60.91.8-0.61.1-1.3-0.6
Heart weight1.32.13.7-1.21.8-1.9-0.3
Delay discount hyperbolic model param1.52.03.2-1.21.6-1.8-0.7
Intermittent access intake day 1-15 change0.10.81.6-1.31.0-0.70.2
Intermittent access intake escalation0.21.22.3-1.51.2-0.80.5
Intermittent access intake escalation 20.50.81.7-1.30.9-0.40.6
Intermitt. access day 1 inactive lever presses0.00.20.5-0.2-0.20.70.2
Intermitt. access day 15 inactive lever presses0.10.50.7-0.70.8-0.8-0.4
Intermitt. access escalation Index0.20.50.7-0.80.8-0.6-0.5
Intermittent access day 1 total infusions0.10.20.30.4-0.40.50.5
Intermittent access day 15 total infusions0.61.52.3-1.31.5-1.50.1
Intermittent access terminal intake (last 3 days)0.20.40.6-0.60.8-0.80.1
Intermittent access total infusions0.10.20.3-0.30.5-0.5-0.0
Intermittent access day 1 locomotion0.30.50.8-0.80.7-0.50.9
Intermittent access day 15 total locomotion0.10.60.70.9-0.80.70.6
Intermittent access total locomotion0.40.50.70.4-0.60.80.8
Intermittent access standard deviation0.10.70.8-0.70.9-0.9-0.9
Left kidney weight0.10.91.90.50.4-1.1-1.4
Right kidney weight0.10.71.30.70.3-1.2-1.0
Cocaine induced anxiety0.30.71.7-1.00.40.01.3
Post-drug Anxiety1.01.11.9-1.41.0-0.71.0
Baseline Anxiety0.61.01.8-0.61.1-1.3-0.7
Tail length0.21.32.6-0.41.1-1.6-1.1
Length with tail0.52.13.90.01.1-2.0-1.8
Length without tail0.20.81.50.00.7-1.1-1.2
Times rat made contact with spout0.30.30.40.6-0.60.6-0.4
Lifetime Intake0.10.10.1-0.30.4-0.20.2
Liver weight, left0.10.20.3-0.30.5-0.5-0.3
Liver weight, right0.40.70.9-1.01.0-0.80.5
Locomotor activity0.20.31.00.1-0.0-0.3-1.0
Locomotor testing distance0.10.20.50.2-0.1-0.4-0.7
Locomotor testing rearing0.10.40.7-0.80.5-0.40.6
Locomotion in novel chamber1.72.25.8-1.60.60.12.4
Locomotion in novel chamber post-restriction0.10.31.10.4-0.1-0.2-1.0
Fecal boli incidents, locomotor time 10.10.20.40.2-0.50.60.0
Change in fecal boli incidents, locomotor task0.30.30.6-0.10.5-0.7-0.8
Time >=10cm from walls, locomotor time 12.73.48.60.40.9-2.0-2.9
Bouts of movement, locomotor time 11.52.02.71.4-1.61.60.7
Total resting periods, locomotor time 12.32.63.81.9-1.91.70.2
Rest time, locomotor task time 11.32.23.71.3-1.71.90.7
Distance moved, locomotor task time 11.13.06.1-1.11.9-2.5-1.0
Vertical activity count, locomotor time 10.21.63.5-0.71.4-1.9-0.6
Time >=10cm from walls, locomotor time 20.20.61.80.40.1-0.7-1.3
Bouts of movement, locomotor time 21.65.48.12.6-2.82.60.1
Total resting periods, locomotor time 21.55.98.82.8-3.02.6-0.1
Rest time, locomotor task time 21.52.63.81.9-1.91.70.1
Distance moved, locomotor task time 22.12.84.4-1.62.0-2.1-0.3
Vertical activity count, locomotor time 20.20.50.8-0.60.8-0.9-0.2
Light reinforcement 10.10.50.70.5-0.80.80.8
Light reinforcement 21.43.24.91.9-2.22.1-0.1
Bone: marrow area1.53.87.7-2.81.9-1.01.6
Bone: maximum diameter2.55.09.4-3.12.6-1.90.4
Bone: maximum force0.20.40.7-0.80.6-0.7-0.2
Bone: maximum moment0.30.61.1-1.00.8-0.8-0.2
Mean time between licks in bursts0.10.50.9-0.60.8-1.00.1
Mean num. licks in bursts0.92.53.8-1.82.0-1.7-0.4
Cd content in liver0.50.61.31.1-0.80.4-0.5
Co content in liver1.51.83.2-0.61.4-1.8-1.3
Cu content in liver3.94.67.32.7-2.61.9-0.7
Fe content in liver1.51.83.21.8-1.61.2-0.5
K content in liver1.31.32.11.3-1.41.2-0.2
Mg content in liver1.11.22.01.2-1.41.20.2
Mn content in liver7.07.811.72.9-3.43.01.3
Na content in liver1.51.72.71.6-1.61.1-0.4
Rb content in liver0.20.20.70.2-0.1-0.1-0.9
Se content in liver13.115.528.05.3-4.63.3-1.3
Sr content in liver0.40.30.50.7-0.50.2-0.6
Zn content in liver1.51.72.81.7-1.71.0-0.6
Bone: minimum diameter4.99.415.9-4.03.6-2.80.7
Time in familiar zone, hab. session 10.40.41.1-0.60.10.21.1
Time in novel zone, hab. session 10.10.20.30.5-0.50.4-0.1
Total zone transitions, hab. session 10.10.20.40.2-0.50.60.2
Total locomotion distance, hab. session 11.21.62.61.6-1.41.0-1.1
Locomotion velocity, hab. session 11.82.54.02.0-1.51.0-1.7
Time in familiar zone, hab. session 20.10.10.3-0.50.30.10.3
Time in novel zone, hab. session 20.10.20.40.7-0.4-0.0-0.2
Total zone transitions, hab. session 20.10.10.20.3-0.30.4-0.0
Total locomotion distance, hab. session 20.30.40.70.9-0.60.5-0.6
Locomotion velocity, hab. session 20.50.71.11.0-0.80.8-0.6
Novel to familiar place preference ratio1.51.93.10.6-1.41.81.5
Novelty place preference1.51.93.10.5-1.31.81.6
Time in novel zone, NPP test1.51.82.90.4-1.21.71.7
Total zone transitions, NPP test0.30.41.50.40.0-0.3-1.2
Total locomotion distance, NPP test1.82.54.41.9-1.20.5-2.1
Locomotion velocity, NPP test1.62.35.01.8-1.00.3-2.2
Intraocular pressure0.81.33.60.1-0.81.01.9
Delta distance traveled before/after self-admin0.80.91.9-1.40.9-0.50.6
Delta ambulatory time before/after self-admin0.91.53.1-1.81.3-0.90.5
Parametrial fat weight0.51.22.70.30.6-1.3-1.7
Pavlov. Cond. lever latency0.20.30.8-0.60.10.30.9
Pavlov. Cond. magazine entry latency1.01.33.80.80.2-0.9-2.0
Pavlov. Cond. change in total contacts0.40.40.80.30.3-0.8-0.9
Pavlov. Cond. index score0.70.92.41.1-0.3-0.4-1.6
Pavlov. Cond. latency score0.70.92.40.9-0.1-0.5-1.5
Pavlov. Cond. lever contacts0.30.40.80.8-0.2-0.2-0.9
Pavlov. Cond. magazine entry number0.60.71.8-0.2-0.50.91.3
Pavlov. Cond. intertrial magazine entries0.20.20.40.6-0.50.40.2
Pavlov. Cond. lever-magazine prob. diff.0.60.82.01.0-0.3-0.3-1.4
Pavlov. Cond. response bias0.50.61.70.50.2-0.8-1.3
Pavlov. Cond. lever latency0.81.23.5-0.7-0.10.71.9
Pavlov. Cond. magazine entry latency0.50.71.90.50.2-0.7-1.4
Pavlov. Cond. change in total contacts0.30.82.00.00.6-0.9-1.4
Pavlov. Cond. index score0.81.33.90.70.2-0.9-2.0
Pavlov. Cond. latency score0.71.23.50.70.2-0.8-1.9
Pavlov. Cond. lever contacts0.81.23.50.70.2-0.8-1.9
Pavlov. Cond. magazine entry number1.31.74.9-1.20.10.72.2
Pavlov. Cond. intertrial magazine entries0.40.82.4-0.80.10.51.5
Pavlov. Cond. lever-magazine prob. diff.0.81.33.90.70.2-0.8-2.0
Pavlov. Cond. response bias1.01.44.30.70.2-0.9-2.1
Time in closed arm before self-admin0.10.30.70.2-0.50.80.3
Time in closed arm after self-admin0.10.10.2-0.0-0.10.2-0.4
Time in open arm before self-admin0.40.51.6-0.3-0.20.41.3
Time in open arm after self-admin0.40.41.20.1-0.40.61.1
Bone: periosteal estimation1.43.46.3-2.52.1-1.60.4
Bone: periosteal perimeter1.83.56.4-2.52.2-1.70.1
Bone: post-yield work0.40.71.5-0.90.6-0.41.2
Progressive ratio test 1 active lever presses0.20.30.70.4-0.40.60.8
Progressive ratio test 1 breakpoint0.20.30.60.4-0.50.60.8
Progressive ratio test 1 inactive lever presses0.10.30.9-0.2-0.00.41.0
Progressive ratio test 2 active lever presses0.30.40.70.4-0.60.80.6
Progressive ratio test 2 breakpoint0.30.40.70.5-0.60.80.5
Progressive ratio test 2 inactive lever presses0.20.81.40.4-0.81.21.0
Incentive Sensitization - Responses0.10.20.40.4-0.50.6-0.1
Incentive Sensitization - Breakpoint0.10.20.20.5-0.50.5-0.3
Sum of active levers in priming session hrs 5-60.10.10.20.2-0.40.40.1
Progressive ratio0.20.50.6-0.70.8-0.80.6
Food seeking constrained by brief footshock0.30.41.00.7-0.0-0.3-1.0
Seeking ratio, punishment vs. effort0.51.01.61.3-0.80.4-1.3
Retroperitoneal fat weight0.10.50.7-0.60.8-0.8-0.6
Reaction time number correct0.31.22.9-1.20.40.31.7
Reaction time mean minus median0.21.32.6-0.81.4-1.6-0.3
Reaction time mean minus median AUC0.21.01.8-0.91.2-1.3-0.0
Reaction time num false alarms0.20.30.5-0.50.7-0.60.2
Reaction time num false alarms AUC0.20.51.0-0.61.0-0.90.1
Reaction time trials correct on left0.31.22.9-1.20.40.31.7
Reaction time trials on left0.31.12.7-1.30.40.21.6
Reaction time mean0.30.61.40.20.4-0.9-1.2
Reaction time mean AUC0.20.51.10.40.2-0.8-1.0
Median of all reaction times0.30.41.20.5-0.1-0.4-1.1
Reaction time omissions0.50.91.2-0.91.1-1.1-0.5
Reaction time false alarm rate0.30.40.70.10.6-0.9-0.7
Reaction time premature initiation rate1.21.93.60.01.1-1.7-1.9
Reaction time premature initiations0.51.42.5-0.61.3-1.6-1.0
Std. dev. reaction times0.62.14.1-0.71.6-2.0-1.0
Reaction time trials completed0.31.12.7-1.30.40.21.6
Reaction time trials AUC0.31.12.8-1.20.30.41.7
Run reversals in cocaine runway, females1.21.42.71.0-1.41.60.2
Run reversals in cocaine runway, males0.80.92.51.6-0.80.2-0.6
Latency to leave start box in cocaine runway1.82.55.3-2.31.7-1.00.8
Latency to leave start box in cocaine runway, F2.43.06.2-2.51.7-0.81.5
Latency to leave start box in cocaine runway, M0.40.40.7-0.80.7-0.5-0.4
Std. dev. time between licks in bursts0.20.30.50.7-0.70.3-0.2
Total sessions with >9 infusions0.10.10.30.1-0.20.50.4
Short access day 1 total inactive lever presses0.50.92.0-0.8-0.31.41.0
Short access day 10 total inactive lever presses0.00.20.40.3-0.2-0.1-0.7
Short access day 1 total infusions0.71.42.51.1-1.31.60.3
Short access day 10 total infusions0.20.40.90.9-0.60.5-0.2
Short access total infusions0.20.20.50.5-0.50.70.2
Short access day 1 locomotion1.22.04.4-0.4-0.71.72.1
Short access day 10 total locomotion0.20.70.90.8-0.90.90.8
Short access total locomotion0.50.81.70.2-0.61.11.3
One hour access (0.3 mA shock)0.10.10.3-0.40.20.00.6
Compulsive drug intake1.11.62.4-1.51.4-1.3-0.6
One hour access (shock baseline)0.00.10.50.1-0.0-0.00.7
Social response proportion0.81.02.0-1.1-0.00.81.4
Social responses0.60.81.3-1.10.8-0.31.1
Social time0.00.00.1-0.00.2-0.3-0.1
Soleus weight0.31.02.0-1.40.9-0.41.0
Bone: stiffness0.51.01.5-1.01.1-1.2-0.5
Tibialis anterior weight0.10.50.8-0.90.6-0.30.8
Time to tail flick, vehicle, before self-admin1.41.83.10.9-1.51.81.0
Time to tail flick, vehicle, after self-admin0.00.10.2-0.50.2-0.00.2
Time to tail flick, test, before self-admin0.40.51.6-0.30.00.31.3
Time to tail flick, test, after self-admin0.50.61.30.2-0.81.10.6
Delta time to tail flick, vehicle, before/after SA0.30.40.5-0.50.7-0.7-0.6
Delta time to tail flick, test, before/after SA0.40.50.70.6-0.70.7-0.8
Tibia length0.20.40.8-0.20.6-0.7-0.9
Ambulatory time before self-admin0.10.40.90.0-0.40.70.9
Ambulatory time after self-admin0.40.61.4-0.90.20.41.2
Bone: tissue strength0.30.30.5-0.70.7-0.50.4
Total heroin consumption0.10.10.30.5-0.20.1-0.2
Bone: trabecular number0.20.30.7-0.60.10.20.8
Bone: trabecular spacing0.50.71.20.00.6-1.0-1.1
Bone: trabecular thickness0.71.01.8-1.31.2-0.8-0.0
Bone: trabecular tissue density0.30.61.3-1.20.6-0.50.5
Water consumed over 24 hours0.30.50.80.7-0.80.9-0.1
Number of responses in last shaping day0.00.10.1-0.20.10.20.4