Creb3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Creb3 0.15 0.1 4.9e-05 0.04 0.01 0.03 0.03 2.9e-04 1.5e-02 1.4e-03 1.7e-03
2 Adipose mRNA stability Creb3 0.05 0.04 7.7e-04 0.01 0.02 0.02 0.02 4.9e-02 3.4e-03 1.1e-03 4.5e-03
3 Adipose gene expression Creb3 0.04 0.03 2.6e-03 0 0 0 0 3.1e-01 1.0e-01 1.1e-01 1.8e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.51.02.01.40.8-0.6
Area under the delay curve0.10.10.4-0.6-0.10.1
BMI with tail1.03.64.72.21.7-1.7
BMI without tail0.94.86.92.62.1-1.8
Body weight3.515.316.54.14.1-3.6
Weight adjusted by age0.20.71.00.60.9-1.0
Bone surface0.71.31.71.31.2-1.0
Bone volume0.30.71.01.00.8-0.6
Breakpoint value in progressive ratio session1.11.93.1-0.41.6-1.8
Number of licking bursts1.03.15.52.31.6-1.2
Context. condit. distance diff. score0.10.10.2-0.4-0.40.3
Locomotion velocity, session 15.05.67.71.22.8-2.8
Locomotion distance, session 11.41.82.40.91.6-1.4
Locomotion velocity, session 21.11.32.91.70.9-0.6
Locomotion distance, session 22.23.14.02.01.9-1.3
Locomotion velocity, session 30.80.91.30.41.2-1.1
Locomotion distance, session 34.04.65.21.82.3-2.3
Stereotopy head waving bouts, day 30.20.30.4-0.10.6-0.7
Stereotopy head waving duration, day 30.10.10.2-0.50.0-0.0
Locomotion velocity, session 70.10.10.1-0.3-0.20.2
Locomotion distance, session 70.50.60.80.60.9-0.8
Stereotopy head waving bouts, day 72.02.33.01.31.6-1.7
Stereotopy head waving duration, day 70.70.90.90.91.0-0.9
Locomotion velocity, session 80.10.20.40.20.6-0.3
Locomotion distance, session 80.50.70.90.71.0-0.8
Degree of sensitization distance1.71.82.2-1.2-1.31.5
Degree of sensitization stereotypy1.61.72.11.21.2-1.4
Conditioned locomotion0.60.71.4-0.10.9-1.2
Cocaine response after cond. corrected0.40.71.9-1.4-0.0-0.3
Cocaine response after cond. not corrected0.30.51.3-1.10.2-0.2
Cocaine response before conditioning0.30.40.90.90.5-0.1
Saline control response1.52.12.81.31.7-1.4
Bone: connectivity density0.20.40.90.90.3-0.3
Bone: cortical apparent density0.60.91.3-0.3-1.11.2
Bone: cortical area0.61.02.61.60.5-0.2
Bone: cortical porosity0.20.20.2-0.4-0.50.4
Bone: cortical porosity0.00.10.10.10.3-0.3
Bone: cortical thickness0.20.30.30.5-0.50.5
Bone: cortical thickness0.91.11.4-0.9-1.21.1
Bone: cortical tissue density0.50.91.2-0.3-1.11.1
Condit. Reinf. active minus inactive responses0.20.20.70.80.2-0.1
Condit. Reinf. active-inactive response ratio0.80.80.9-0.9-1.00.9
Condit. Reinf. active responses1.41.94.12.01.0-0.6
Condit. Reinf. inactive responses1.51.94.62.11.0-0.5
Incentive salience index mean3.34.36.92.61.9-1.5
Condit. Reinf. lever presses9.514.318.64.33.8-3.1
Condit. Reinf. active minus inactive responses0.20.40.90.90.3-0.3
Condit. Reinf. active-inactive response ratio0.00.00.10.3-0.20.1
Condit. Reinf. active responses1.41.93.71.91.1-1.0
Condit. Reinf. inactive responses1.21.73.81.91.0-0.7
Condit. Reinf. lever presses0.81.13.21.80.3-0.1
Condit. Reinf. lever reinforcers received1.52.24.22.01.2-0.9
Conditioned reinforcement - actives0.10.40.70.10.6-0.8
Conditioned reinforcement - inactives0.10.20.4-0.70.2-0.3
Conditioned locomotion0.81.22.10.31.1-1.5
Patch foraging indifference point 0 sec1.95.48.51.02.6-2.9
Patch foraging indifference point AUC4.510.814.93.93.3-2.6
Delay disc. indifference point, 0s delay0.20.20.6-0.8-0.10.2
Delay disc. indifference point, 16s delay0.30.40.7-0.80.3-0.5
Delay disc. indifference point, 2s delay0.00.00.10.1-0.20.3
Delay disc. indifference point, 24s delay0.10.20.2-0.4-0.30.5
Delay disc. indifference point, 4s delay0.00.00.0-0.2-0.20.1
Delay disc. indifference point, 8s delay0.00.00.00.10.00.1
Indifference point function ln k1.03.15.2-2.3-1.61.2
Indifference point function log k1.03.15.2-2.3-1.61.2
Patch foraging total patch changes 0 sec2.16.39.41.32.8-3.1
Patch foraging total patch changes 12 sec2.63.53.61.91.9-1.8
Patch foraging total patch changes 18 sec0.71.61.91.31.4-1.1
Patch foraging total patch changes 24 sec1.44.95.02.22.2-2.2
Patch foraging total patch changes 6 sec4.98.39.72.33.1-3.1
Patch foraging time to switch 0 sec1.66.16.2-2.5-2.52.4
Patch foraging water rate 0 sec1.55.88.21.92.4-2.9
Patch foraging water rate 12 sec0.00.20.50.00.2-0.7
Patch foraging water rate 18 sec0.10.20.30.50.0-0.5
Patch foraging water rate 24 sec0.30.40.7-0.3-0.90.6
Patch foraging water rate 6 sec0.40.60.90.90.6-0.8
Seeking ratio, delayed vs. immediate footshock2.02.83.51.91.6-1.6
Distance traveled before self-admin2.04.55.52.42.0-2.0
Distance traveled after self-admin0.20.41.01.0-0.10.3
Extensor digitorum longus weight4.417.423.24.84.1-3.5
Bone: elastic displacement5.06.37.7-2.8-2.62.1
Bone: elastic work5.06.58.5-2.1-2.92.5
Bone: endosteal estimation1.33.23.92.02.0-1.4
Bone: endosteal perimeter1.53.64.31.92.1-1.7
Epididymis fat weight0.10.61.41.20.6-0.2
Delta time in closed arm before/after self-admin0.20.20.40.2-0.40.6
Delta time in open arm before/after self-admin0.10.10.1-0.30.2-0.3
Diff in mean of infusions in LGA sessions0.40.81.4-0.5-0.81.2
Delay discount exponential model param0.10.10.30.50.10.0
Extinction: sum of active levers before priming1.42.24.1-2.0-1.21.0
Active lever presses in extinction session 60.10.10.4-0.6-0.2-0.0
Bone: final force0.71.12.51.60.8-0.2
Bone: final moment0.40.71.91.40.50.1
Food consumed during 24 hour testing period0.40.81.01.01.0-0.7
Glucose2.64.04.72.22.0-1.8
Heart weight0.30.61.11.00.7-0.4
Delay discount hyperbolic model param0.00.10.10.4-0.10.1
Intermittent access intake day 1-15 change0.10.30.70.90.4-0.3
Intermittent access intake escalation0.00.20.50.70.10.0
Intermittent access intake escalation 20.10.20.50.7-0.20.3
Intermitt. access day 1 inactive lever presses0.11.61.81.41.3-1.1
Intermitt. access day 15 inactive lever presses0.00.10.20.10.3-0.5
Intermitt. access escalation Index0.30.81.11.01.1-0.7
Intermittent access day 1 total infusions0.30.91.5-1.20.5-0.9
Intermittent access day 15 total infusions0.10.20.4-0.00.5-0.6
Intermittent access terminal intake (last 3 days)0.30.60.80.10.9-0.9
Intermittent access total infusions0.91.11.80.11.2-1.3
Intermittent access day 1 locomotion0.30.61.1-1.00.4-0.8
Intermittent access day 15 total locomotion0.10.51.1-1.10.2-0.7
Intermittent access total locomotion0.60.72.0-1.4-0.50.1
Intermittent access standard deviation0.10.50.80.40.6-0.9
Left kidney weight0.53.74.81.92.2-1.7
Right kidney weight0.21.32.11.41.2-0.5
Cocaine induced anxiety0.10.20.2-0.4-0.40.5
Post-drug Anxiety0.60.61.01.00.9-0.4
Baseline Anxiety0.20.40.90.90.5-0.1
Tail length1.05.69.33.02.3-1.5
Length with tail2.19.411.23.13.4-2.8
Length without tail0.31.72.60.61.5-1.6
Times rat made contact with spout0.10.10.30.50.2-0.1
Lifetime Intake1.31.72.70.11.5-1.7
Liver weight, left0.00.00.0-0.10.10.2
Liver weight, right0.81.41.7-1.3-1.31.0
Locomotor activity0.00.00.00.20.00.1
Locomotor testing distance0.00.10.1-0.10.4-0.3
Locomotor testing rearing0.31.11.51.21.2-0.6
Locomotion in novel chamber0.60.81.0-0.7-1.01.0
Locomotion in novel chamber post-restriction0.20.51.01.0-0.20.6
Fecal boli incidents, locomotor time 10.41.11.2-1.0-1.11.1
Change in fecal boli incidents, locomotor task1.71.82.11.01.4-1.5
Time >=10cm from walls, locomotor time 10.60.81.30.40.9-1.1
Bouts of movement, locomotor time 11.51.92.4-1.5-1.41.2
Total resting periods, locomotor time 12.83.33.6-1.8-1.91.7
Rest time, locomotor task time 13.75.98.0-1.6-2.72.8
Distance moved, locomotor task time 12.05.66.61.92.6-2.6
Vertical activity count, locomotor time 10.74.96.21.72.5-2.4
Time >=10cm from walls, locomotor time 20.00.10.10.40.3-0.4
Bouts of movement, locomotor time 20.10.40.60.80.5-0.7
Total resting periods, locomotor time 20.00.10.20.40.2-0.4
Rest time, locomotor task time 20.71.21.5-1.0-1.21.0
Distance moved, locomotor task time 20.10.20.40.6-0.00.4
Vertical activity count, locomotor time 20.30.61.11.00.8-0.4
Light reinforcement 11.15.27.01.62.6-2.4
Light reinforcement 22.04.67.11.12.7-2.3
Bone: marrow area1.23.04.02.01.8-1.3
Bone: maximum diameter1.12.34.62.11.3-0.7
Bone: maximum force1.32.65.72.41.3-0.6
Bone: maximum moment1.01.84.42.10.9-0.3
Mean time between licks in bursts0.21.32.2-0.7-1.11.5
Mean num. licks in bursts0.72.02.7-1.6-1.41.2
Cd content in liver0.70.81.01.01.0-0.6
Co content in liver0.10.10.2-0.4-0.0-0.0
Cu content in liver2.32.72.8-1.6-1.71.7
Fe content in liver0.30.30.8-0.9-0.30.3
K content in liver0.00.00.1-0.20.2-0.3
Mg content in liver0.20.20.4-0.7-0.30.1
Mn content in liver0.30.30.90.90.30.0
Na content in liver2.22.53.3-1.3-1.61.8
Rb content in liver3.84.56.5-2.6-2.01.7
Se content in liver0.70.92.01.40.7-0.3
Sr content in liver0.40.40.50.60.7-0.5
Zn content in liver0.10.10.30.3-0.20.5
Bone: minimum diameter0.10.20.3-0.2-0.50.5
Time in familiar zone, hab. session 12.02.23.4-1.0-1.81.5
Time in novel zone, hab. session 10.20.20.6-0.80.3-0.1
Total zone transitions, hab. session 10.00.00.10.1-0.10.3
Total locomotion distance, hab. session 10.30.40.70.5-0.50.8
Locomotion velocity, hab. session 10.50.72.11.40.30.1
Time in familiar zone, hab. session 22.22.53.4-1.1-1.81.7
Time in novel zone, hab. session 20.40.40.7-0.80.4-0.5
Total zone transitions, hab. session 21.01.31.51.11.2-1.0
Total locomotion distance, hab. session 20.60.71.41.20.7-0.5
Locomotion velocity, hab. session 20.71.01.81.40.8-0.6
Novel to familiar place preference ratio0.81.12.8-1.7-0.60.3
Novelty place preference1.51.94.2-2.1-1.00.6
Time in novel zone, NPP test2.02.45.3-2.3-1.20.7
Total zone transitions, NPP test1.11.72.11.31.4-1.1
Total locomotion distance, NPP test2.73.84.12.02.0-1.8
Locomotion velocity, NPP test3.14.45.02.22.1-1.9
Intraocular pressure3.45.56.62.22.6-2.3
Delta distance traveled before/after self-admin0.70.71.2-0.4-0.91.1
Delta ambulatory time before/after self-admin1.11.92.6-1.0-1.51.6
Parametrial fat weight0.00.00.1-0.30.1-0.2
Pavlov. Cond. lever latency6.17.710.4-3.2-2.72.2
Pavlov. Cond. magazine entry latency0.30.30.80.90.4-0.1
Pavlov. Cond. change in total contacts2.72.93.92.01.7-1.4
Pavlov. Cond. index score2.22.74.92.21.5-1.0
Pavlov. Cond. latency score2.12.74.62.11.5-1.1
Pavlov. Cond. lever contacts5.46.59.13.02.5-2.0
Pavlov. Cond. magazine entry number0.30.40.9-1.0-0.40.2
Pavlov. Cond. intertrial magazine entries0.10.20.40.60.3-0.1
Pavlov. Cond. lever-magazine prob. diff.1.92.34.62.21.3-0.8
Pavlov. Cond. response bias2.93.65.92.41.8-1.3
Pavlov. Cond. lever latency0.81.23.3-1.8-0.40.1
Pavlov. Cond. magazine entry latency0.91.21.9-0.6-1.21.4
Pavlov. Cond. change in total contacts0.41.01.60.7-1.01.3
Pavlov. Cond. index score0.50.71.30.3-0.91.1
Pavlov. Cond. latency score0.40.71.10.4-0.81.0
Pavlov. Cond. lever contacts0.60.92.51.60.20.1
Pavlov. Cond. magazine entry number0.91.22.00.01.2-1.4
Pavlov. Cond. intertrial magazine entries0.40.91.10.71.0-1.0
Pavlov. Cond. lever-magazine prob. diff.0.60.91.60.3-1.01.3
Pavlov. Cond. response bias0.40.50.80.9-0.50.8
Time in closed arm before self-admin0.10.20.5-0.7-0.40.0
Time in closed arm after self-admin1.01.11.3-0.8-1.11.1
Time in open arm before self-admin1.62.02.51.41.6-1.2
Time in open arm after self-admin2.42.73.31.41.8-1.7
Bone: periosteal estimation0.92.34.12.01.4-0.8
Bone: periosteal perimeter0.61.11.41.11.2-0.9
Bone: post-yield work2.33.95.12.32.1-1.5
Progressive ratio test 1 active lever presses0.81.52.7-0.61.2-1.6
Progressive ratio test 1 breakpoint0.81.42.5-0.51.2-1.6
Progressive ratio test 1 inactive lever presses1.53.95.31.22.3-2.2
Progressive ratio test 2 active lever presses0.81.11.8-0.71.1-1.4
Progressive ratio test 2 breakpoint0.91.11.8-0.71.0-1.3
Progressive ratio test 2 inactive lever presses0.30.91.40.31.2-1.1
Incentive Sensitization - Responses0.10.20.2-0.40.3-0.5
Incentive Sensitization - Breakpoint0.10.20.2-0.50.3-0.5
Sum of active levers in priming session hrs 5-60.90.92.5-1.6-0.2-0.1
Progressive ratio0.00.10.1-0.00.4-0.1
Food seeking constrained by brief footshock10.913.614.73.53.8-3.8
Seeking ratio, punishment vs. effort1.33.03.41.91.6-1.7
Retroperitoneal fat weight0.62.83.2-1.5-1.81.7
Reaction time number correct0.10.50.90.50.6-0.9
Reaction time mean minus median0.21.32.90.2-1.01.7
Reaction time mean minus median AUC0.10.51.00.8-0.21.0
Reaction time num false alarms0.10.20.40.2-0.20.7
Reaction time num false alarms AUC0.20.40.70.80.7-0.2
Reaction time trials correct on left0.10.50.90.50.6-0.9
Reaction time trials on left0.10.40.70.40.6-0.8
Reaction time mean2.55.58.2-1.6-2.42.9
Reaction time mean AUC2.56.18.8-1.8-2.53.0
Median of all reaction times4.06.37.9-2.2-2.52.8
Reaction time omissions1.42.33.1-1.8-1.21.5
Reaction time false alarm rate0.10.20.5-0.1-0.20.7
Reaction time premature initiation rate2.43.74.8-2.2-2.01.5
Reaction time premature initiations0.61.92.9-1.7-1.40.8
Std. dev. reaction times0.93.05.6-0.6-1.72.4
Reaction time trials completed0.10.40.70.40.6-0.8
Reaction time trials AUC0.10.40.70.40.5-0.8
Run reversals in cocaine runway, females0.10.20.50.0-0.10.7
Run reversals in cocaine runway, males0.00.10.1-0.3-0.20.1
Latency to leave start box in cocaine runway0.20.30.40.70.3-0.5
Latency to leave start box in cocaine runway, F0.10.10.1-0.40.0-0.3
Latency to leave start box in cocaine runway, M1.71.62.71.61.1-1.0
Std. dev. time between licks in bursts0.30.50.6-0.6-0.70.8
Total sessions with >9 infusions1.21.52.50.21.4-1.6
Short access day 1 total inactive lever presses1.53.04.41.01.9-2.1
Short access day 10 total inactive lever presses0.10.40.70.80.4-0.5
Short access day 1 total infusions1.12.23.30.31.8-1.8
Short access day 10 total infusions0.91.52.50.01.4-1.6
Short access total infusions1.21.72.7-0.21.5-1.7
Short access day 1 locomotion0.30.51.2-1.10.3-0.4
Short access day 10 total locomotion0.31.31.5-1.2-1.20.9
Short access total locomotion0.20.30.4-0.40.5-0.6
One hour access (0.3 mA shock)1.41.72.40.61.6-1.5
Compulsive drug intake0.20.30.40.4-0.40.6
One hour access (shock baseline)1.02.74.40.31.9-2.1
Social response proportion3.84.86.2-1.7-2.22.5
Social responses0.40.51.11.10.6-0.1
Social time0.40.61.5-0.2-0.61.2
Soleus weight0.51.62.90.51.7-1.3
Bone: stiffness1.73.17.12.71.4-0.5
Tibialis anterior weight7.626.332.95.75.1-4.4
Time to tail flick, vehicle, before self-admin0.30.40.7-0.8-0.60.4
Time to tail flick, vehicle, after self-admin0.00.00.0-0.0-0.1-0.1
Time to tail flick, test, before self-admin0.50.50.70.80.8-0.5
Time to tail flick, test, after self-admin0.60.61.51.20.5-0.2
Delta time to tail flick, vehicle, before/after SA0.10.10.20.40.10.1
Delta time to tail flick, test, before/after SA0.30.40.6-0.3-0.80.6
Tibia length0.10.30.50.40.7-0.4
Ambulatory time before self-admin1.44.24.42.12.0-2.0
Ambulatory time after self-admin0.10.20.60.80.3-0.2
Bone: tissue strength0.30.30.60.5-0.30.8
Total heroin consumption0.40.51.0-1.00.3-0.7
Bone: trabecular number0.30.61.51.20.6-0.3
Bone: trabecular spacing0.10.10.2-0.1-0.40.4
Bone: trabecular thickness0.20.30.3-0.4-0.60.6
Bone: trabecular tissue density1.52.75.42.31.4-0.7
Water consumed over 24 hours0.30.60.70.90.7-0.7
Number of responses in last shaping day1.62.03.50.11.6-1.9