Cpxm1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Cpxm1 0.02 0.02 6.4e-03 0.03 0.01 0.01 0.02 6.8e-04 8.7e-03 7.8e-03 4.9e-03
2 Adipose gene expression Cpxm1 0.05 0.04 3.1e-07 0.05 0.05 0.05 0.05 2.5e-06 7.0e-06 6.9e-06 4.5e-06
3 PL intron excision ratio chr3_117601886_117617729 0.03 0.02 1.7e-04 0.03 0.03 0.03 0.01 1.2e-04 2.1e-04 7.8e-04 3.0e-02
4 PL intron excision ratio chr3_117617434_117617729 0.02 0.02 4.1e-03 0 0.01 0.03 0 8.2e-02 4.4e-02 8.7e-04 7.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.50.7-0.80.7-0.7-0.3
Area under the delay curve0.40.40.70.4-0.80.8-0.1
BMI with tail1.44.65.1-2.32.2-2.21.8
BMI without tail3.98.09.7-3.12.6-2.62.9
Body weight6.326.629.0-5.25.4-5.44.6
Weight adjusted by age2.73.03.9-2.01.7-1.71.5
Bone surface0.40.71.3-1.20.9-0.90.2
Bone volume0.40.81.2-1.11.0-1.00.1
Breakpoint value in progressive ratio session4.04.45.7-1.92.0-2.02.4
Number of licking bursts0.20.20.50.7-0.30.30.2
Context. condit. distance diff. score0.10.10.1-0.30.4-0.4-0.2
Locomotion velocity, session 10.30.41.1-0.60.0-0.01.1
Locomotion distance, session 10.10.10.4-0.60.1-0.10.2
Locomotion velocity, session 20.20.30.50.1-0.70.7-0.3
Locomotion distance, session 20.81.11.9-1.41.0-1.00.8
Locomotion velocity, session 31.21.42.2-1.51.1-1.10.9
Locomotion distance, session 37.07.79.4-3.12.9-2.92.0
Stereotopy head waving bouts, day 31.92.22.81.5-1.41.4-1.7
Stereotopy head waving duration, day 31.01.21.61.3-1.11.1-0.8
Locomotion velocity, session 71.11.21.6-1.01.3-1.30.6
Locomotion distance, session 70.50.71.3-1.20.7-0.70.6
Stereotopy head waving bouts, day 70.50.50.7-0.50.8-0.80.8
Stereotopy head waving duration, day 70.20.30.4-0.10.6-0.60.6
Locomotion velocity, session 80.70.81.3-0.81.1-1.10.1
Locomotion distance, session 81.82.63.8-2.01.8-1.80.7
Degree of sensitization distance2.22.22.71.5-1.61.6-1.0
Degree of sensitization stereotypy2.62.93.3-1.51.7-1.71.8
Conditioned locomotion2.42.84.8-2.21.6-1.61.2
Cocaine response after cond. corrected0.00.10.10.2-0.30.3-0.1
Cocaine response after cond. not corrected0.10.20.20.4-0.50.5-0.0
Cocaine response before conditioning0.20.20.50.7-0.40.40.1
Saline control response6.28.110.0-3.22.9-2.92.2
Bone: connectivity density0.10.10.3-0.40.3-0.3-0.5
Bone: cortical apparent density0.70.92.1-0.90.6-0.61.4
Bone: cortical area3.75.66.9-2.62.3-2.32.1
Bone: cortical porosity0.40.40.6-0.70.5-0.50.8
Bone: cortical porosity0.90.91.1-1.10.9-0.91.0
Bone: cortical thickness1.72.83.8-2.01.5-1.51.7
Bone: cortical thickness0.40.40.6-0.60.6-0.60.8
Bone: cortical tissue density0.60.71.8-0.80.5-0.51.3
Condit. Reinf. active minus inactive responses1.11.21.6-1.11.2-1.20.8
Condit. Reinf. active-inactive response ratio1.01.11.7-0.91.3-1.30.3
Condit. Reinf. active responses0.70.91.1-1.00.9-0.91.0
Condit. Reinf. inactive responses0.10.10.1-0.0-0.30.30.4
Incentive salience index mean0.60.71.1-1.10.8-0.80.7
Condit. Reinf. lever presses0.10.20.5-0.70.2-0.20.4
Condit. Reinf. active minus inactive responses1.41.82.1-1.31.4-1.41.1
Condit. Reinf. active-inactive response ratio1.71.82.2-1.21.5-1.51.1
Condit. Reinf. active responses2.23.03.6-1.81.9-1.91.3
Condit. Reinf. inactive responses0.30.40.6-0.70.7-0.70.1
Condit. Reinf. lever presses1.11.51.6-1.21.2-1.21.2
Condit. Reinf. lever reinforcers received1.62.22.7-1.61.6-1.61.0
Conditioned reinforcement - actives0.00.00.00.0-0.10.10.1
Conditioned reinforcement - inactives0.30.31.0-0.30.3-0.3-1.0
Conditioned locomotion0.10.20.50.30.0-0.0-0.7
Patch foraging indifference point 0 sec0.30.52.10.00.1-0.1-1.4
Patch foraging indifference point AUC0.50.50.8-0.90.8-0.80.3
Delay disc. indifference point, 0s delay1.41.52.71.7-1.31.30.5
Delay disc. indifference point, 16s delay1.01.01.70.7-1.31.3-0.2
Delay disc. indifference point, 2s delay0.20.20.80.1-0.10.1-0.9
Delay disc. indifference point, 24s delay2.82.74.21.4-2.02.0-0.7
Delay disc. indifference point, 4s delay0.10.10.3-0.20.2-0.20.6
Delay disc. indifference point, 8s delay0.50.50.80.5-0.90.9-0.2
Indifference point function ln k0.00.10.1-0.40.1-0.10.3
Indifference point function log k0.00.10.1-0.40.1-0.10.3
Patch foraging total patch changes 0 sec0.30.51.8-0.10.2-0.2-1.3
Patch foraging total patch changes 12 sec0.30.40.6-0.80.6-0.6-0.4
Patch foraging total patch changes 18 sec1.01.32.71.0-0.80.8-1.6
Patch foraging total patch changes 24 sec1.82.23.61.5-1.21.2-1.9
Patch foraging total patch changes 6 sec0.60.91.3-0.61.0-1.0-1.1
Patch foraging time to switch 0 sec1.52.32.71.6-1.61.6-1.1
Patch foraging water rate 0 sec3.14.96.1-2.32.5-2.51.5
Patch foraging water rate 12 sec0.10.10.30.00.4-0.4-0.5
Patch foraging water rate 18 sec0.50.71.1-0.61.0-1.00.4
Patch foraging water rate 24 sec0.70.92.0-0.70.8-0.81.4
Patch foraging water rate 6 sec2.43.54.6-1.51.9-1.92.1
Seeking ratio, delayed vs. immediate footshock0.20.20.30.5-0.50.5-0.1
Distance traveled before self-admin5.35.67.4-2.42.7-2.71.5
Distance traveled after self-admin3.84.25.7-1.82.4-2.41.5
Extensor digitorum longus weight0.31.01.7-0.41.0-1.01.3
Bone: elastic displacement0.10.20.60.1-0.00.00.8
Bone: elastic work0.20.20.3-0.20.5-0.50.6
Bone: endosteal estimation0.61.41.8-1.21.3-1.30.7
Bone: endosteal perimeter2.34.75.5-2.22.3-2.31.7
Epididymis fat weight1.33.13.8-2.01.9-1.91.3
Delta time in closed arm before/after self-admin0.30.30.40.5-0.50.5-0.7
Delta time in open arm before/after self-admin1.51.52.7-0.71.6-1.60.1
Diff in mean of infusions in LGA sessions0.00.00.00.0-0.10.1-0.0
Delay discount exponential model param0.40.40.7-0.40.8-0.80.3
Extinction: sum of active levers before priming0.90.91.2-0.71.1-1.10.9
Active lever presses in extinction session 60.10.10.10.3-0.30.30.1
Bone: final force3.15.17.4-2.72.1-2.11.9
Bone: final moment2.64.26.1-2.52.0-2.01.7
Food consumed during 24 hour testing period1.21.52.71.2-1.01.0-1.6
Glucose0.60.81.4-0.71.2-1.20.1
Heart weight2.43.45.1-2.31.9-1.91.2
Delay discount hyperbolic model param0.30.30.5-0.30.7-0.70.4
Intermittent access intake day 1-15 change0.90.91.2-0.71.1-1.11.0
Intermittent access intake escalation0.20.20.3-0.20.5-0.50.5
Intermittent access intake escalation 20.10.10.20.4-0.00.0-0.3
Intermitt. access day 1 inactive lever presses0.90.92.80.8-0.40.4-1.7
Intermitt. access day 15 inactive lever presses0.50.62.20.2-0.00.0-1.5
Intermitt. access escalation Index0.20.10.5-0.10.1-0.10.7
Intermittent access day 1 total infusions0.00.00.00.0-0.20.20.1
Intermittent access day 15 total infusions0.10.10.1-0.10.3-0.30.3
Intermittent access terminal intake (last 3 days)0.00.00.1-0.10.2-0.20.3
Intermittent access total infusions0.00.00.1-0.0-0.00.00.3
Intermittent access day 1 locomotion0.50.51.10.5-0.60.6-1.1
Intermittent access day 15 total locomotion0.60.62.40.3-0.20.2-1.5
Intermittent access total locomotion0.20.20.80.3-0.20.2-0.9
Intermittent access standard deviation0.20.20.6-0.20.3-0.30.8
Left kidney weight1.13.03.4-1.81.8-1.81.5
Right kidney weight0.82.22.5-1.61.5-1.51.2
Cocaine induced anxiety7.68.714.12.7-2.62.6-3.8
Post-drug Anxiety2.32.62.81.6-1.61.6-1.7
Baseline Anxiety1.51.64.1-0.80.9-0.92.0
Tail length5.215.717.9-4.03.8-3.84.2
Length with tail4.717.118.5-4.24.3-4.33.8
Length without tail1.63.44.6-1.62.1-2.11.3
Times rat made contact with spout0.20.31.00.4-0.10.1-1.0
Lifetime Intake0.50.61.3-0.50.6-0.61.1
Liver weight, left0.00.00.10.30.1-0.10.0
Liver weight, right0.30.41.3-0.40.3-0.31.1
Locomotor activity0.00.00.2-0.40.0-0.00.0
Locomotor testing distance0.30.40.60.6-0.60.6-0.8
Locomotor testing rearing0.10.10.4-0.2-0.00.0-0.6
Locomotion in novel chamber0.20.30.40.4-0.50.50.7
Locomotion in novel chamber post-restriction0.70.81.0-0.91.0-1.00.6
Fecal boli incidents, locomotor time 10.10.10.2-0.30.4-0.40.4
Change in fecal boli incidents, locomotor task0.20.20.30.3-0.40.4-0.5
Time >=10cm from walls, locomotor time 10.10.10.1-0.30.3-0.30.2
Bouts of movement, locomotor time 11.41.62.21.4-1.51.50.0
Total resting periods, locomotor time 11.31.41.91.3-1.41.40.3
Rest time, locomotor task time 10.30.30.40.5-0.60.60.1
Distance moved, locomotor task time 10.10.20.3-0.20.4-0.4-0.6
Vertical activity count, locomotor time 10.50.51.3-0.60.5-0.5-1.2
Time >=10cm from walls, locomotor time 20.10.10.2-0.10.2-0.20.5
Bouts of movement, locomotor time 20.10.20.40.7-0.30.30.0
Total resting periods, locomotor time 20.20.20.50.7-0.30.30.0
Rest time, locomotor task time 20.60.71.31.1-0.80.8-0.7
Distance moved, locomotor task time 20.00.00.1-0.3-0.00.0-0.1
Vertical activity count, locomotor time 20.50.51.6-0.60.3-0.3-1.3
Light reinforcement 10.50.91.2-1.10.8-0.81.1
Light reinforcement 20.40.60.8-0.80.7-0.70.9
Bone: marrow area0.61.31.7-1.11.3-1.30.7
Bone: maximum diameter4.27.79.0-3.02.9-2.92.2
Bone: maximum force0.50.91.7-1.30.8-0.80.8
Bone: maximum moment0.30.50.9-0.90.6-0.60.6
Mean time between licks in bursts0.30.50.8-0.30.9-0.90.3
Mean num. licks in bursts0.10.20.4-0.40.1-0.1-0.7
Cd content in liver0.30.30.80.1-0.40.4-0.9
Co content in liver0.60.70.8-0.90.9-0.90.7
Cu content in liver1.51.82.0-1.41.4-1.41.1
Fe content in liver0.10.10.3-0.10.2-0.2-0.6
K content in liver0.30.30.6-0.80.3-0.30.7
Mg content in liver1.51.52.2-1.51.2-1.20.9
Mn content in liver1.21.42.5-1.60.9-0.91.1
Na content in liver0.20.20.3-0.1-0.40.40.5
Rb content in liver3.84.77.6-2.02.7-2.70.2
Se content in liver0.40.40.9-0.90.6-0.60.4
Sr content in liver0.80.71.1-0.70.8-0.81.0
Zn content in liver0.10.10.4-0.60.2-0.20.3
Bone: minimum diameter2.03.74.5-2.12.1-2.11.3
Time in familiar zone, hab. session 10.80.81.11.0-0.80.8-0.9
Time in novel zone, hab. session 10.20.20.4-0.70.3-0.30.3
Total zone transitions, hab. session 10.10.10.5-0.7-0.10.10.2
Total locomotion distance, hab. session 10.10.10.2-0.2-0.40.4-0.0
Locomotion velocity, hab. session 10.10.10.1-0.4-0.40.40.2
Time in familiar zone, hab. session 21.51.61.71.3-1.21.2-1.3
Time in novel zone, hab. session 21.61.62.0-1.21.2-1.21.4
Total zone transitions, hab. session 22.53.35.2-2.11.3-1.32.3
Total locomotion distance, hab. session 20.40.51.0-1.00.2-0.21.0
Locomotion velocity, hab. session 20.20.20.4-0.7-0.20.20.6
Novel to familiar place preference ratio0.10.10.20.4-0.10.1-0.3
Novelty place preference0.20.20.40.6-0.30.3-0.4
Time in novel zone, NPP test0.10.10.20.4-0.10.1-0.2
Total zone transitions, NPP test0.30.51.2-0.7-0.30.31.1
Total locomotion distance, NPP test0.20.20.4-0.5-0.30.30.6
Locomotion velocity, NPP test0.20.30.5-0.1-0.70.70.4
Intraocular pressure0.10.10.30.10.1-0.10.6
Delta distance traveled before/after self-admin0.20.20.3-0.40.5-0.50.6
Delta ambulatory time before/after self-admin0.30.30.50.6-0.70.7-0.2
Parametrial fat weight0.10.10.2-0.1-0.50.5-0.1
Pavlov. Cond. lever latency0.10.10.20.00.3-0.30.4
Pavlov. Cond. magazine entry latency0.00.00.1-0.30.2-0.20.2
Pavlov. Cond. change in total contacts0.10.10.2-0.40.2-0.2-0.0
Pavlov. Cond. index score0.00.00.1-0.30.1-0.10.1
Pavlov. Cond. latency score0.00.00.0-0.1-0.20.2-0.1
Pavlov. Cond. lever contacts0.10.10.4-0.60.2-0.20.1
Pavlov. Cond. magazine entry number0.70.91.10.9-0.90.9-1.0
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.10.6-0.60.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.20.1-0.10.2
Pavlov. Cond. response bias0.50.70.8-0.90.8-0.80.7
Pavlov. Cond. lever latency3.74.95.62.4-2.12.1-2.3
Pavlov. Cond. magazine entry latency0.20.20.4-0.30.4-0.4-0.6
Pavlov. Cond. change in total contacts3.54.85.5-2.32.2-2.22.0
Pavlov. Cond. index score3.24.14.9-2.22.1-2.11.6
Pavlov. Cond. latency score2.32.93.6-1.91.8-1.81.3
Pavlov. Cond. lever contacts3.75.15.4-2.32.3-2.32.1
Pavlov. Cond. magazine entry number0.60.71.00.8-1.01.0-0.3
Pavlov. Cond. intertrial magazine entries1.11.42.10.9-1.51.5-0.9
Pavlov. Cond. lever-magazine prob. diff.2.93.74.4-2.12.0-2.01.5
Pavlov. Cond. response bias3.95.36.3-2.32.5-2.51.9
Time in closed arm before self-admin0.00.00.10.3-0.20.20.2
Time in closed arm after self-admin0.30.30.60.5-0.50.5-0.8
Time in open arm before self-admin0.90.91.70.4-1.31.3-0.5
Time in open arm after self-admin0.00.00.1-0.10.3-0.30.1
Bone: periosteal estimation2.65.46.2-2.52.4-2.41.9
Bone: periosteal perimeter4.06.68.2-2.62.9-2.91.8
Bone: post-yield work0.70.91.01.0-0.90.9-1.0
Progressive ratio test 1 active lever presses3.13.23.6-1.91.7-1.71.9
Progressive ratio test 1 breakpoint3.94.14.6-2.12.0-2.02.0
Progressive ratio test 1 inactive lever presses0.20.20.3-0.30.5-0.50.2
Progressive ratio test 2 active lever presses0.40.40.4-0.70.6-0.60.7
Progressive ratio test 2 breakpoint0.40.50.8-0.70.5-0.50.9
Progressive ratio test 2 inactive lever presses0.10.10.4-0.20.2-0.2-0.7
Incentive Sensitization - Responses0.60.60.7-0.70.8-0.80.8
Incentive Sensitization - Breakpoint0.40.40.4-0.50.7-0.70.6
Sum of active levers in priming session hrs 5-60.60.50.8-0.90.8-0.80.4
Progressive ratio2.93.44.31.9-2.12.1-1.1
Food seeking constrained by brief footshock0.20.20.4-0.60.4-0.4-0.4
Seeking ratio, punishment vs. effort2.63.24.2-2.02.1-2.10.4
Retroperitoneal fat weight0.10.31.0-0.4-0.10.11.0
Reaction time number correct0.10.10.2-0.30.4-0.4-0.1
Reaction time mean minus median1.01.31.41.2-1.21.2-1.1
Reaction time mean minus median AUC0.81.01.11.0-1.01.0-1.0
Reaction time num false alarms1.62.23.3-1.81.4-1.41.3
Reaction time num false alarms AUC1.82.43.6-1.91.5-1.51.4
Reaction time trials correct on left0.10.10.2-0.30.4-0.4-0.1
Reaction time trials on left0.10.10.2-0.40.4-0.4-0.1
Reaction time mean0.00.00.00.20.0-0.0-0.2
Reaction time mean AUC0.00.00.10.3-0.00.0-0.3
Median of all reaction times0.10.10.1-0.10.4-0.4-0.0
Reaction time omissions0.10.10.2-0.50.4-0.40.1
Reaction time false alarm rate1.11.62.2-1.51.1-1.11.3
Reaction time premature initiation rate0.20.30.40.6-0.60.6-0.4
Reaction time premature initiations0.20.30.30.5-0.60.6-0.6
Std. dev. reaction times0.00.10.1-0.20.1-0.10.4
Reaction time trials completed0.10.10.2-0.40.4-0.4-0.1
Reaction time trials AUC0.10.20.3-0.40.5-0.5-0.1
Run reversals in cocaine runway, females0.20.10.50.2-0.10.1-0.7
Run reversals in cocaine runway, males1.01.01.2-0.91.1-1.10.9
Latency to leave start box in cocaine runway0.60.70.90.5-0.90.9-0.9
Latency to leave start box in cocaine runway, F1.11.21.41.0-1.21.2-1.1
Latency to leave start box in cocaine runway, M0.00.00.1-0.30.1-0.10.0
Std. dev. time between licks in bursts0.91.01.3-1.11.1-1.10.6
Total sessions with >9 infusions1.11.21.8-0.91.1-1.11.3
Short access day 1 total inactive lever presses0.80.81.10.9-1.11.1-0.6
Short access day 10 total inactive lever presses5.35.912.62.2-1.81.8-3.6
Short access day 1 total infusions0.20.30.4-0.30.5-0.50.6
Short access day 10 total infusions0.50.62.1-0.30.2-0.21.4
Short access total infusions1.31.42.9-0.81.0-1.01.7
Short access day 1 locomotion0.70.71.90.9-0.30.3-1.4
Short access day 10 total locomotion0.10.10.40.10.3-0.3-0.7
Short access total locomotion0.10.10.40.10.3-0.3-0.6
One hour access (0.3 mA shock)0.00.00.00.2-0.10.10.2
Compulsive drug intake5.15.15.72.2-2.42.4-2.1
One hour access (shock baseline)0.80.91.2-0.71.0-1.01.1
Social response proportion0.80.81.1-1.01.0-1.0-0.2
Social responses3.34.35.8-2.42.0-2.01.7
Social time0.30.50.8-0.70.5-0.50.9
Soleus weight0.10.20.40.00.4-0.40.6
Bone: stiffness1.62.54.1-2.01.4-1.41.4
Tibialis anterior weight0.93.23.4-1.61.9-1.91.8
Time to tail flick, vehicle, before self-admin1.31.32.31.5-1.21.2-0.5
Time to tail flick, vehicle, after self-admin0.10.10.5-0.00.1-0.10.7
Time to tail flick, test, before self-admin0.50.51.0-1.00.6-0.60.4
Time to tail flick, test, after self-admin2.82.95.41.6-1.41.4-2.3
Delta time to tail flick, vehicle, before/after SA2.72.73.9-2.01.5-1.51.5
Delta time to tail flick, test, before/after SA3.02.73.81.9-1.31.3-2.0
Tibia length5.314.818.1-3.54.3-4.33.3
Ambulatory time before self-admin4.44.55.5-2.22.4-2.41.5
Ambulatory time after self-admin4.85.37.0-2.12.6-2.61.7
Bone: tissue strength0.10.10.3-0.50.0-0.00.5
Total heroin consumption2.42.83.9-2.01.8-1.81.1
Bone: trabecular number0.40.60.8-0.90.8-0.80.5
Bone: trabecular spacing0.20.20.40.3-0.60.6-0.0
Bone: trabecular thickness0.60.71.0-0.81.0-1.0-0.3
Bone: trabecular tissue density0.91.32.7-1.61.0-1.00.7
Water consumed over 24 hours0.20.20.50.7-0.40.4-0.4
Number of responses in last shaping day0.20.20.40.6-0.20.2-0.6