Cox18

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Cox18 0.02 0.02 5.2e-03 0.02 0.01 0.01 0.01 5.0e-03 1.4e-02 5.5e-02 2.9e-02
2 BLA intron excision ratio chr14_18155213_18155534 0.07 0.06 4.6e-03 -0 0.02 0.01 -0 5.5e-01 2.0e-02 6.7e-02 4.4e-01
3 Liver gene expression Cox18 0.04 0.03 9.7e-04 -0 0.02 0.01 0 6.0e-01 5.6e-03 4.5e-02 1.3e-01
4 IC gene expression Cox18 0.49 0.16 6.5e-03 0.07 0.02 0.06 0.08 7.0e-04 5.2e-02 1.7e-03 4.0e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.83.44.72.12.1-2.20.3
Area under the delay curve0.10.10.20.2-0.30.5-0.0
BMI with tail4.214.718.14.34.0-3.53.5
BMI without tail0.73.64.51.82.1-1.81.9
Body weight0.00.10.2-0.50.10.10.0
Weight adjusted by age0.20.71.70.20.7-0.81.3
Bone surface0.61.32.30.91.3-1.5-0.3
Bone volume0.61.31.91.11.2-1.4-0.7
Breakpoint value in progressive ratio session0.00.10.20.10.3-0.4-0.0
Number of licking bursts0.30.81.4-1.2-0.80.90.6
Context. condit. distance diff. score1.72.14.61.70.4-0.8-2.1
Locomotion velocity, session 10.60.70.80.90.8-0.60.9
Locomotion distance, session 10.70.92.21.50.8-0.7-0.5
Locomotion velocity, session 20.20.30.40.50.5-0.4-0.6
Locomotion distance, session 20.20.20.60.5-0.10.1-0.7
Locomotion velocity, session 30.20.30.80.90.4-0.3-0.1
Locomotion distance, session 31.92.23.41.81.6-1.21.2
Stereotopy head waving bouts, day 30.10.10.3-0.2-0.40.50.2
Stereotopy head waving duration, day 30.10.20.20.1-0.50.5-0.5
Locomotion velocity, session 70.60.72.20.7-0.1-0.1-1.5
Locomotion distance, session 70.20.30.50.70.3-0.3-0.7
Stereotopy head waving bouts, day 70.50.61.20.30.8-0.61.1
Stereotopy head waving duration, day 70.30.41.4-0.00.3-0.11.2
Locomotion velocity, session 83.23.89.43.11.7-1.7-0.1
Locomotion distance, session 81.92.75.62.41.0-1.3-1.6
Degree of sensitization distance1.92.04.5-1.1-1.30.9-2.1
Degree of sensitization stereotypy0.20.20.9-0.20.3-0.10.9
Conditioned locomotion0.10.10.30.60.0-0.1-0.2
Cocaine response after cond. corrected0.20.30.4-0.7-0.50.5-0.2
Cocaine response after cond. not corrected0.00.10.10.00.3-0.3-0.1
Cocaine response before conditioning1.72.03.11.41.7-1.80.6
Saline control response0.40.60.70.80.8-0.8-0.5
Bone: connectivity density2.43.85.82.42.1-2.20.3
Bone: cortical apparent density0.30.41.30.20.5-0.11.2
Bone: cortical area0.91.52.41.11.2-1.6-0.8
Bone: cortical porosity0.20.20.80.30.10.10.9
Bone: cortical porosity0.30.31.10.20.2-0.11.0
Bone: cortical thickness3.25.38.02.62.5-2.80.2
Bone: cortical thickness0.70.81.80.30.7-1.0-1.3
Bone: cortical tissue density0.30.51.70.20.5-0.11.3
Condit. Reinf. active minus inactive responses0.50.61.2-1.1-0.70.80.4
Condit. Reinf. active-inactive response ratio0.70.71.3-1.1-0.70.80.6
Condit. Reinf. active responses0.10.20.3-0.5-0.40.4-0.2
Condit. Reinf. inactive responses0.20.30.30.50.4-0.5-0.6
Incentive salience index mean0.00.10.1-0.3-0.30.30.0
Condit. Reinf. lever presses0.20.30.50.70.6-0.70.0
Condit. Reinf. active minus inactive responses0.10.20.40.30.6-0.50.1
Condit. Reinf. active-inactive response ratio0.10.20.5-0.70.2-0.20.3
Condit. Reinf. active responses0.00.00.2-0.00.00.0-0.4
Condit. Reinf. inactive responses0.10.20.70.4-0.20.1-0.8
Condit. Reinf. lever presses1.42.03.7-1.1-1.31.2-1.9
Condit. Reinf. lever reinforcers received0.10.10.30.10.10.0-0.6
Conditioned reinforcement - actives0.10.40.7-0.4-0.50.6-0.8
Conditioned reinforcement - inactives0.30.72.2-0.4-0.60.4-1.5
Conditioned locomotion2.53.75.1-2.0-2.02.3-1.4
Patch foraging indifference point 0 sec0.10.30.80.60.40.00.9
Patch foraging indifference point AUC0.20.41.0-0.1-0.60.5-1.0
Delay disc. indifference point, 0s delay0.00.10.20.1-0.00.20.4
Delay disc. indifference point, 16s delay0.10.10.50.70.2-0.10.1
Delay disc. indifference point, 2s delay0.50.60.9-0.4-0.80.9-0.8
Delay disc. indifference point, 24s delay0.91.42.5-1.1-1.41.6-0.4
Delay disc. indifference point, 4s delay0.10.10.20.5-0.30.4-0.1
Delay disc. indifference point, 8s delay0.30.51.20.60.6-0.41.1
Indifference point function ln k0.00.10.30.20.5-0.5-0.1
Indifference point function log k0.00.10.30.20.5-0.5-0.1
Patch foraging total patch changes 0 sec0.10.20.60.50.30.10.8
Patch foraging total patch changes 12 sec0.10.10.20.5-0.10.20.4
Patch foraging total patch changes 18 sec0.10.10.4-0.3-0.00.20.6
Patch foraging total patch changes 24 sec0.00.20.30.5-0.20.5-0.2
Patch foraging total patch changes 6 sec0.10.20.40.6-0.10.30.5
Patch foraging time to switch 0 sec0.31.23.20.31.0-0.91.8
Patch foraging water rate 0 sec0.20.81.2-0.5-0.90.9-1.1
Patch foraging water rate 12 sec0.00.10.10.4-0.20.40.0
Patch foraging water rate 18 sec0.20.40.7-0.6-0.70.8-0.3
Patch foraging water rate 24 sec0.81.11.6-1.3-1.01.0-0.9
Patch foraging water rate 6 sec1.21.82.4-0.8-1.61.5-1.4
Seeking ratio, delayed vs. immediate footshock0.70.92.1-0.2-0.90.9-1.4
Distance traveled before self-admin0.71.62.2-1.3-1.51.4-0.9
Distance traveled after self-admin3.56.17.5-2.3-2.72.6-2.3
Extensor digitorum longus weight11.144.252.16.07.2-6.66.7
Bone: elastic displacement1.72.13.41.51.7-1.80.3
Bone: elastic work2.63.45.11.62.2-2.31.1
Bone: endosteal estimation1.53.75.7-2.4-1.91.8-1.4
Bone: endosteal perimeter0.41.02.2-1.5-1.00.8-0.5
Epididymis fat weight0.20.91.7-0.8-1.11.3-0.0
Delta time in closed arm before/after self-admin0.30.30.80.40.3-0.30.9
Delta time in open arm before/after self-admin0.20.30.6-0.2-0.60.4-0.8
Diff in mean of infusions in LGA sessions0.20.30.7-0.70.2-0.4-0.8
Delay discount exponential model param0.10.20.4-0.10.5-0.60.2
Extinction: sum of active levers before priming0.30.51.0-0.7-0.81.0-0.1
Active lever presses in extinction session 62.12.13.1-1.8-1.61.6-0.6
Bone: final force0.10.20.6-0.5-0.3-0.0-0.7
Bone: final moment0.20.40.7-0.8-0.50.3-0.6
Food consumed during 24 hour testing period0.20.50.70.80.7-0.70.5
Glucose1.21.92.3-1.5-1.51.5-1.0
Heart weight0.20.40.60.60.7-0.80.2
Delay discount hyperbolic model param0.10.20.3-0.20.4-0.60.2
Intermittent access intake day 1-15 change0.00.30.5-0.7-0.20.60.4
Intermittent access intake escalation0.00.20.3-0.5-0.10.40.6
Intermittent access intake escalation 21.01.62.2-1.2-1.21.5-1.2
Intermitt. access day 1 inactive lever presses0.11.53.31.81.0-1.1-0.7
Intermitt. access day 15 inactive lever presses0.20.93.6-0.2-0.3-0.1-1.9
Intermitt. access escalation Index0.20.51.5-1.2-0.40.20.4
Intermittent access day 1 total infusions0.30.91.1-0.9-1.00.9-0.9
Intermittent access day 15 total infusions0.71.62.0-1.2-1.31.4-1.2
Intermittent access terminal intake (last 3 days)2.44.15.3-1.6-2.12.1-2.3
Intermittent access total infusions1.51.72.2-1.0-1.41.3-1.5
Intermittent access day 1 locomotion0.30.60.7-0.8-0.80.8-0.7
Intermittent access day 15 total locomotion0.82.95.0-0.7-1.91.7-2.2
Intermittent access total locomotion2.02.43.1-1.6-1.71.8-1.2
Intermittent access standard deviation0.10.51.60.2-0.40.4-1.3
Left kidney weight0.00.10.4-0.20.2-0.2-0.7
Right kidney weight0.32.02.8-1.7-1.31.1-1.4
Cocaine induced anxiety0.20.41.5-1.20.2-0.20.3
Post-drug Anxiety0.20.30.4-0.40.7-0.70.2
Baseline Anxiety0.10.20.90.90.2-0.2-0.2
Tail length2.815.020.2-4.5-4.03.8-3.0
Length with tail5.323.433.7-5.8-4.94.5-4.0
Length without tail0.94.86.8-2.6-2.11.8-2.2
Times rat made contact with spout0.50.50.90.80.6-0.51.0
Lifetime Intake0.70.91.4-1.0-1.11.2-0.4
Liver weight, left0.61.12.1-0.9-1.21.5-0.0
Liver weight, right0.40.71.5-0.4-1.01.20.2
Locomotor activity0.30.40.8-0.3-0.60.6-0.9
Locomotor testing distance0.10.30.90.5-0.2-0.1-1.0
Locomotor testing rearing0.10.20.60.60.0-0.2-0.7
Locomotion in novel chamber0.20.30.6-0.4-0.70.8-0.2
Locomotion in novel chamber post-restriction0.20.70.9-0.7-1.00.9-0.7
Fecal boli incidents, locomotor time 10.00.10.1-0.20.1-0.30.3
Change in fecal boli incidents, locomotor task0.40.51.2-1.1-0.40.40.6
Time >=10cm from walls, locomotor time 10.91.13.4-1.00.00.01.8
Bouts of movement, locomotor time 10.30.40.6-0.6-0.80.6-0.6
Total resting periods, locomotor time 10.50.60.8-0.8-0.90.8-0.5
Rest time, locomotor task time 10.60.91.5-1.2-1.00.8-0.8
Distance moved, locomotor task time 10.10.30.50.70.6-0.40.4
Vertical activity count, locomotor time 10.10.40.7-0.5-0.70.9-0.0
Time >=10cm from walls, locomotor time 20.20.51.10.10.7-0.81.0
Bouts of movement, locomotor time 20.30.91.2-0.4-1.11.0-1.1
Total resting periods, locomotor time 20.20.70.9-0.4-1.00.9-0.9
Rest time, locomotor task time 20.71.11.6-0.8-1.31.0-1.2
Distance moved, locomotor task time 21.21.62.21.11.5-1.11.3
Vertical activity count, locomotor time 20.10.20.6-0.20.20.10.8
Light reinforcement 10.00.10.20.1-0.50.4-0.1
Light reinforcement 20.10.31.01.00.2-0.10.3
Bone: marrow area1.33.35.2-2.3-1.81.7-1.4
Bone: maximum diameter0.10.10.4-0.10.4-0.6-0.2
Bone: maximum force0.10.31.0-0.2-0.1-0.2-1.0
Bone: maximum moment0.20.40.8-0.6-0.40.2-0.9
Mean time between licks in bursts0.21.32.7-1.6-1.11.1-0.1
Mean num. licks in bursts0.30.92.11.40.8-0.9-0.2
Cd content in liver2.22.43.80.71.7-1.62.0
Co content in liver0.40.51.1-1.0-0.60.5-0.6
Cu content in liver0.10.10.2-0.2-0.20.3-0.5
Fe content in liver0.30.41.3-0.50.3-0.21.1
K content in liver0.20.20.70.8-0.10.0-0.2
Mg content in liver0.10.10.40.1-0.30.2-0.6
Mn content in liver1.61.82.31.51.5-1.50.7
Na content in liver0.20.30.60.8-0.20.40.6
Rb content in liver0.60.71.4-1.2-0.40.41.1
Se content in liver0.30.30.60.2-0.60.5-0.8
Sr content in liver1.21.11.60.80.8-1.3-1.1
Zn content in liver0.20.20.50.70.4-0.40.0
Bone: minimum diameter4.89.210.2-3.2-3.12.8-3.1
Time in familiar zone, hab. session 11.11.22.81.70.9-1.1-0.3
Time in novel zone, hab. session 13.94.48.4-2.9-2.02.20.4
Total zone transitions, hab. session 10.20.30.40.5-0.40.6-0.6
Total locomotion distance, hab. session 11.01.44.00.7-0.90.7-2.0
Locomotion velocity, hab. session 10.81.12.81.3-0.20.1-1.7
Time in familiar zone, hab. session 20.10.10.30.30.1-0.20.6
Time in novel zone, hab. session 20.40.40.7-0.8-0.50.5-0.7
Total zone transitions, hab. session 20.60.82.90.4-0.2-0.2-1.7
Total locomotion distance, hab. session 21.21.65.70.3-0.70.2-2.4
Locomotion velocity, hab. session 21.01.44.90.5-0.50.1-2.2
Novel to familiar place preference ratio0.10.10.20.0-0.30.4-0.2
Novelty place preference0.10.20.4-0.2-0.50.6-0.1
Time in novel zone, NPP test0.30.30.7-0.4-0.70.9-0.2
Total zone transitions, NPP test0.71.11.51.21.1-1.2-0.2
Total locomotion distance, NPP test0.50.71.41.20.5-0.6-0.8
Locomotion velocity, NPP test0.71.02.01.40.8-1.0-0.6
Intraocular pressure1.42.33.3-1.7-1.01.51.8
Delta distance traveled before/after self-admin0.60.70.8-0.8-0.90.9-0.7
Delta ambulatory time before/after self-admin0.10.20.3-0.6-0.40.5-0.1
Parametrial fat weight0.71.51.9-1.3-1.41.2-1.1
Pavlov. Cond. lever latency0.30.41.4-0.30.4-0.31.2
Pavlov. Cond. magazine entry latency0.10.20.40.60.2-0.10.4
Pavlov. Cond. change in total contacts0.20.20.80.1-0.10.0-0.9
Pavlov. Cond. index score0.20.20.80.90.2-0.1-0.3
Pavlov. Cond. latency score0.20.30.80.90.2-0.2-0.4
Pavlov. Cond. lever contacts0.30.31.00.5-0.1-0.0-1.0
Pavlov. Cond. magazine entry number0.00.10.2-0.40.0-0.00.2
Pavlov. Cond. intertrial magazine entries0.60.72.60.1-0.40.2-1.6
Pavlov. Cond. lever-magazine prob. diff.0.20.20.70.80.1-0.1-0.3
Pavlov. Cond. response bias0.10.10.30.2-0.30.4-0.5
Pavlov. Cond. lever latency0.00.00.00.00.1-0.20.2
Pavlov. Cond. magazine entry latency0.30.51.1-1.0-0.60.6-0.5
Pavlov. Cond. change in total contacts0.00.00.10.30.1-0.00.2
Pavlov. Cond. index score0.20.20.4-0.7-0.40.4-0.5
Pavlov. Cond. latency score0.00.10.1-0.3-0.00.0-0.3
Pavlov. Cond. lever contacts0.20.40.4-0.5-0.60.6-0.6
Pavlov. Cond. magazine entry number0.10.10.30.50.0-0.1-0.3
Pavlov. Cond. intertrial magazine entries0.10.10.4-0.1-0.40.2-0.6
Pavlov. Cond. lever-magazine prob. diff.0.20.30.5-0.7-0.50.5-0.5
Pavlov. Cond. response bias0.40.60.9-0.9-0.80.9-0.4
Time in closed arm before self-admin0.30.52.1-0.3-0.1-0.2-1.4
Time in closed arm after self-admin0.70.82.00.80.3-0.7-1.4
Time in open arm before self-admin0.50.71.7-0.8-0.20.41.3
Time in open arm after self-admin1.31.42.2-1.2-1.41.50.3
Bone: periosteal estimation0.30.71.5-1.0-0.60.3-1.2
Bone: periosteal perimeter0.00.10.10.00.1-0.3-0.3
Bone: post-yield work1.11.92.7-1.6-1.51.4-0.8
Progressive ratio test 1 active lever presses2.34.05.2-2.0-2.32.2-1.4
Progressive ratio test 1 breakpoint2.33.95.1-1.9-2.22.2-1.4
Progressive ratio test 1 inactive lever presses0.30.83.00.5-0.1-0.1-1.7
Progressive ratio test 2 active lever presses2.02.83.4-1.5-1.81.8-1.6
Progressive ratio test 2 breakpoint2.22.83.4-1.4-1.81.8-1.6
Progressive ratio test 2 inactive lever presses0.72.25.6-0.7-1.31.0-2.4
Incentive Sensitization - Responses0.61.51.6-1.3-1.31.1-1.3
Incentive Sensitization - Breakpoint0.71.61.7-1.3-1.31.2-1.3
Sum of active levers in priming session hrs 5-60.10.10.20.50.1-0.1-0.0
Progressive ratio0.10.20.30.30.5-0.4-0.3
Food seeking constrained by brief footshock0.30.30.60.50.8-0.50.5
Seeking ratio, punishment vs. effort0.00.00.1-0.0-0.30.30.1
Retroperitoneal fat weight0.42.03.5-1.9-1.41.4-0.5
Reaction time number correct0.10.41.1-1.0-0.60.60.2
Reaction time mean minus median0.10.61.4-1.2-0.50.70.2
Reaction time mean minus median AUC0.10.51.3-1.1-0.50.7-0.2
Reaction time num false alarms0.10.20.50.7-0.20.1-0.3
Reaction time num false alarms AUC0.10.10.40.7-0.20.2-0.0
Reaction time trials correct on left0.10.41.1-1.0-0.60.60.2
Reaction time trials on left0.10.41.1-1.0-0.50.60.2
Reaction time mean0.30.61.6-1.3-0.60.5-0.5
Reaction time mean AUC0.30.81.8-1.3-0.80.7-0.6
Median of all reaction times0.30.51.3-1.2-0.50.3-0.6
Reaction time omissions0.20.41.0-0.11.0-0.70.1
Reaction time false alarm rate0.20.20.80.9-0.10.1-0.1
Reaction time premature initiation rate0.30.51.90.5-0.20.0-1.4
Reaction time premature initiations0.20.51.7-0.1-0.50.4-1.3
Std. dev. reaction times0.20.61.3-1.1-0.50.7-0.4
Reaction time trials completed0.10.41.1-1.0-0.50.60.2
Reaction time trials AUC0.20.61.5-1.2-0.60.70.3
Run reversals in cocaine runway, females0.10.10.40.2-0.0-0.1-0.6
Run reversals in cocaine runway, males0.80.91.50.41.0-0.91.2
Latency to leave start box in cocaine runway2.02.73.2-1.5-1.81.5-1.8
Latency to leave start box in cocaine runway, F2.53.15.7-1.1-1.81.5-2.4
Latency to leave start box in cocaine runway, M0.50.51.4-1.2-0.60.50.2
Std. dev. time between licks in bursts0.30.50.8-0.9-0.60.80.5
Total sessions with >9 infusions0.70.81.8-0.8-0.40.91.3
Short access day 1 total inactive lever presses0.30.50.7-0.3-0.80.7-0.8
Short access day 10 total inactive lever presses0.42.83.81.91.4-1.8-1.6
Short access day 1 total infusions0.20.40.8-0.2-0.80.90.2
Short access day 10 total infusions0.20.30.7-0.1-0.70.80.0
Short access total infusions0.30.41.3-0.4-0.30.51.1
Short access day 1 locomotion1.11.93.4-1.4-1.41.90.1
Short access day 10 total locomotion0.00.20.3-0.0-0.40.5-0.5
Short access total locomotion0.50.71.3-0.9-0.81.10.4
One hour access (0.3 mA shock)4.35.15.6-2.3-2.32.4-2.0
Compulsive drug intake1.72.53.51.71.8-1.90.5
One hour access (shock baseline)1.95.07.0-2.2-2.62.6-1.3
Social response proportion0.10.10.1-0.4-0.20.40.2
Social responses0.40.61.0-0.8-0.91.0-0.2
Social time0.20.30.4-0.6-0.50.6-0.6
Soleus weight3.510.316.64.13.4-3.51.1
Bone: stiffness0.71.22.4-0.5-1.11.0-1.6
Tibialis anterior weight3.813.015.13.93.9-3.53.1
Time to tail flick, vehicle, before self-admin2.22.73.8-1.5-1.61.5-1.9
Time to tail flick, vehicle, after self-admin0.51.03.0-0.3-0.60.6-1.7
Time to tail flick, test, before self-admin0.20.30.9-0.20.0-0.3-1.0
Time to tail flick, test, after self-admin3.33.54.5-2.1-1.91.8-1.6
Delta time to tail flick, vehicle, before/after SA0.30.30.60.80.7-0.50.2
Delta time to tail flick, test, before/after SA0.91.11.6-1.1-1.21.3-0.5
Tibia length1.64.59.8-2.1-1.61.0-3.1
Ambulatory time before self-admin0.41.21.6-0.8-1.31.2-0.9
Ambulatory time after self-admin2.84.55.3-1.8-2.32.2-2.2
Bone: tissue strength0.40.40.5-0.5-0.70.7-0.6
Total heroin consumption2.73.24.9-2.2-1.81.7-1.4
Bone: trabecular number1.02.03.11.81.5-1.6-0.0
Bone: trabecular spacing0.00.10.10.0-0.30.3-0.4
Bone: trabecular thickness0.40.60.90.80.9-1.0-0.0
Bone: trabecular tissue density0.10.10.5-0.30.00.00.7
Water consumed over 24 hours0.00.00.00.2-0.00.00.2
Number of responses in last shaping day0.50.72.20.4-0.40.41.5