Clba1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye mRNA stability Clba1 0.2 0.15 9.9e-03 0.16 0.11 0.1 0.11 1.8e-03 8.9e-03 1.4e-02 8.7e-03
2 Eye intron excision ratio chr6_131886607_131888095 0.24 0.17 5.0e-03 0.08 0.14 0.08 0.1 2.6e-02 3.6e-03 2.2e-02 1.4e-02
3 Eye intron excision ratio chr6_131885909_131888095 0.27 0.19 3.5e-03 0.1 0.16 0.09 0.11 1.3e-02 2.3e-03 1.9e-02 8.8e-03
4 pVTA gene expression Clba1 0.31 0.17 1.6e-04 0.06 0.09 0.07 0.06 1.6e-03 7.8e-05 6.1e-04 9.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.00.20.1-0.1-0.2
Area under the delay curve0.80.91.7-1.3-0.80.80.7
BMI with tail1.85.86.9-2.1-2.62.6-2.3
BMI without tail0.51.11.5-1.2-1.21.2-0.4
Body weight1.14.68.12.92.3-2.30.1
Weight adjusted by age0.30.40.60.50.5-0.60.8
Bone surface0.10.30.4-0.6-0.50.40.4
Bone volume0.10.20.3-0.6-0.40.30.5
Breakpoint value in progressive ratio session0.40.41.50.1-0.30.3-1.2
Number of licking bursts0.70.81.6-1.3-0.80.80.7
Context. condit. distance diff. score3.34.04.82.02.2-2.21.6
Locomotion velocity, session 10.10.10.20.40.4-0.40.2
Locomotion distance, session 10.50.61.1-0.6-0.70.7-1.1
Locomotion velocity, session 20.20.20.4-0.6-0.40.30.6
Locomotion distance, session 20.40.61.2-1.1-0.80.80.1
Locomotion velocity, session 30.00.10.1-0.1-0.20.2-0.3
Locomotion distance, session 30.10.10.2-0.3-0.10.10.4
Stereotopy head waving bouts, day 30.00.00.10.30.2-0.20.1
Stereotopy head waving duration, day 30.10.10.20.30.3-0.30.4
Locomotion velocity, session 70.30.31.10.4-0.10.1-1.1
Locomotion distance, session 70.70.91.1-1.1-1.01.0-0.5
Stereotopy head waving bouts, day 71.92.12.81.71.7-1.60.5
Stereotopy head waving duration, day 71.01.21.91.41.2-1.2-0.1
Locomotion velocity, session 81.72.03.41.81.5-1.50.2
Locomotion distance, session 80.30.50.60.70.8-0.80.4
Degree of sensitization distance0.20.20.3-0.3-0.50.5-0.5
Degree of sensitization stereotypy0.70.71.21.11.0-0.9-0.0
Conditioned locomotion1.41.62.11.41.4-1.40.6
Cocaine response after cond. corrected0.80.93.20.0-0.50.5-1.8
Cocaine response after cond. not corrected1.71.84.8-0.5-1.11.1-2.2
Cocaine response before conditioning1.72.02.7-1.6-1.61.6-0.5
Saline control response0.00.00.00.20.1-0.1-0.1
Bone: connectivity density0.30.50.70.90.8-0.80.4
Bone: cortical apparent density4.96.47.52.22.7-2.72.5
Bone: cortical area0.10.20.30.40.5-0.50.5
Bone: cortical porosity0.30.40.60.40.6-0.60.8
Bone: cortical porosity0.10.20.30.60.4-0.4-0.0
Bone: cortical thickness0.30.60.90.90.8-0.8-0.3
Bone: cortical thickness0.70.81.00.60.9-0.91.0
Bone: cortical tissue density5.06.67.52.12.7-2.72.6
Condit. Reinf. active minus inactive responses0.40.50.8-0.4-0.70.7-0.9
Condit. Reinf. active-inactive response ratio2.02.22.6-1.1-1.61.6-1.6
Condit. Reinf. active responses0.20.20.80.4-0.00.1-0.9
Condit. Reinf. inactive responses1.51.82.41.41.6-1.50.5
Incentive salience index mean0.50.62.00.3-0.30.4-1.4
Condit. Reinf. lever presses0.40.51.60.70.1-0.1-1.3
Condit. Reinf. active minus inactive responses0.80.91.50.70.9-0.91.2
Condit. Reinf. active-inactive response ratio0.60.61.70.20.6-0.71.3
Condit. Reinf. active responses0.10.20.50.10.2-0.20.7
Condit. Reinf. inactive responses0.30.30.4-0.5-0.60.6-0.5
Condit. Reinf. lever presses1.21.72.9-1.7-1.41.30.2
Condit. Reinf. lever reinforcers received0.20.30.90.10.3-0.31.0
Conditioned reinforcement - actives1.41.41.90.81.2-1.21.4
Conditioned reinforcement - inactives0.40.50.60.60.7-0.70.7
Conditioned locomotion0.10.20.5-0.0-0.30.3-0.7
Patch foraging indifference point 0 sec5.28.312.63.53.2-3.11.0
Patch foraging indifference point AUC4.45.19.33.02.3-2.2-0.7
Delay disc. indifference point, 0s delay0.30.40.50.70.6-0.60.4
Delay disc. indifference point, 16s delay1.01.02.0-1.4-0.90.90.6
Delay disc. indifference point, 2s delay2.22.54.3-2.1-1.61.50.8
Delay disc. indifference point, 24s delay0.90.81.6-1.3-0.90.90.3
Delay disc. indifference point, 4s delay0.70.82.3-0.8-0.20.11.5
Delay disc. indifference point, 8s delay0.30.30.6-0.8-0.50.40.5
Indifference point function ln k1.11.53.50.61.0-1.11.9
Indifference point function log k1.11.53.50.61.0-1.11.9
Patch foraging total patch changes 0 sec6.19.915.13.93.5-3.41.0
Patch foraging total patch changes 12 sec3.44.45.42.22.3-2.31.3
Patch foraging total patch changes 18 sec1.92.44.12.01.7-1.60.1
Patch foraging total patch changes 24 sec1.01.32.71.61.1-1.0-0.4
Patch foraging total patch changes 6 sec4.56.612.63.52.6-2.5-0.6
Patch foraging time to switch 0 sec10.115.520.4-4.5-4.44.3-2.0
Patch foraging water rate 0 sec15.625.030.35.45.5-5.53.3
Patch foraging water rate 12 sec7.912.115.92.73.5-3.64.0
Patch foraging water rate 18 sec4.56.16.72.32.5-2.62.4
Patch foraging water rate 24 sec3.54.85.41.92.3-2.32.3
Patch foraging water rate 6 sec4.15.97.12.42.7-2.71.9
Seeking ratio, delayed vs. immediate footshock0.40.40.50.70.7-0.70.5
Distance traveled before self-admin0.70.70.9-1.0-1.00.9-0.4
Distance traveled after self-admin0.40.51.30.20.5-0.61.1
Extensor digitorum longus weight7.931.240.16.36.2-6.22.8
Bone: elastic displacement0.50.62.1-0.40.2-0.31.5
Bone: elastic work0.70.91.8-1.2-0.50.51.3
Bone: endosteal estimation0.91.93.2-1.8-1.11.01.4
Bone: endosteal perimeter0.10.20.4-0.6-0.50.40.4
Epididymis fat weight2.55.97.0-1.8-2.52.6-2.6
Delta time in closed arm before/after self-admin0.10.10.10.30.2-0.2-0.0
Delta time in open arm before/after self-admin0.60.61.21.10.8-0.8-0.2
Diff in mean of infusions in LGA sessions0.80.92.31.00.4-0.3-1.5
Delay discount exponential model param0.70.71.41.20.7-0.7-0.8
Extinction: sum of active levers before priming0.20.20.6-0.0-0.30.3-0.8
Active lever presses in extinction session 61.31.21.61.11.2-1.30.8
Bone: final force0.40.62.2-0.5-0.0-0.11.5
Bone: final moment0.30.62.1-0.30.2-0.21.4
Food consumed during 24 hour testing period0.70.91.31.11.0-1.00.3
Glucose0.20.41.2-0.10.3-0.41.1
Heart weight0.10.10.3-0.4-0.20.20.5
Delay discount hyperbolic model param0.90.91.71.30.9-0.8-0.8
Intermittent access intake day 1-15 change1.51.51.8-1.2-1.31.3-1.0
Intermittent access intake escalation1.51.51.7-1.2-1.31.3-1.0
Intermittent access intake escalation 20.30.30.6-0.4-0.60.6-0.8
Intermitt. access day 1 inactive lever presses2.72.93.61.71.9-1.91.3
Intermitt. access day 15 inactive lever presses0.80.91.70.50.9-0.91.3
Intermitt. access escalation Index0.20.20.50.00.3-0.30.7
Intermittent access day 1 total infusions0.20.20.60.30.00.0-0.8
Intermittent access day 15 total infusions1.11.31.4-1.0-1.21.2-1.2
Intermittent access terminal intake (last 3 days)1.51.61.8-1.1-1.31.4-1.2
Intermittent access total infusions0.20.30.6-0.2-0.40.5-0.8
Intermittent access day 1 locomotion0.20.20.7-0.0-0.30.3-0.8
Intermittent access day 15 total locomotion0.00.00.0-0.2-0.20.2-0.1
Intermittent access total locomotion0.10.10.50.3-0.00.1-0.7
Intermittent access standard deviation2.32.45.7-0.6-1.31.3-2.4
Left kidney weight2.46.78.93.02.9-2.81.2
Right kidney weight1.33.74.62.02.1-2.11.3
Cocaine induced anxiety0.91.02.00.50.9-1.01.4
Post-drug Anxiety0.50.60.80.60.8-0.80.9
Baseline Anxiety1.01.11.5-0.8-1.11.1-1.2
Tail length4.413.316.43.94.0-4.02.3
Length with tail7.527.336.16.05.8-5.82.4
Length without tail4.39.514.53.83.4-3.40.7
Times rat made contact with spout0.10.10.30.50.4-0.3-0.2
Lifetime Intake0.10.10.1-0.4-0.30.3-0.1
Liver weight, left2.13.44.62.12.1-2.00.9
Liver weight, right0.40.61.11.10.6-0.6-0.9
Locomotor activity0.20.20.30.40.5-0.50.6
Locomotor testing distance0.20.40.90.30.5-0.50.9
Locomotor testing rearing1.82.73.4-1.7-1.81.8-1.1
Locomotion in novel chamber4.65.78.31.62.4-2.52.9
Locomotion in novel chamber post-restriction0.10.20.3-0.5-0.30.20.5
Fecal boli incidents, locomotor time 11.71.95.1-0.4-1.01.1-2.3
Change in fecal boli incidents, locomotor task2.52.42.81.41.5-1.61.7
Time >=10cm from walls, locomotor time 12.32.34.21.90.9-0.8-2.1
Bouts of movement, locomotor time 11.51.61.8-1.2-1.31.3-1.2
Total resting periods, locomotor time 11.51.61.9-1.3-1.41.4-1.0
Rest time, locomotor task time 10.30.30.5-0.7-0.50.40.6
Distance moved, locomotor task time 10.60.71.4-1.2-0.80.80.2
Vertical activity count, locomotor time 10.20.20.7-0.40.0-0.10.9
Time >=10cm from walls, locomotor time 21.71.83.61.91.3-1.2-0.8
Bouts of movement, locomotor time 21.61.75.9-0.30.6-0.72.4
Total resting periods, locomotor time 21.41.55.3-0.40.4-0.52.3
Rest time, locomotor task time 20.20.20.8-0.4-0.0-0.00.9
Distance moved, locomotor task time 20.30.40.5-0.7-0.70.7-0.4
Vertical activity count, locomotor time 20.00.00.10.10.2-0.20.1
Light reinforcement 10.00.00.00.20.1-0.10.2
Light reinforcement 21.62.22.5-1.2-1.51.5-1.6
Bone: marrow area0.91.93.2-1.8-1.11.01.5
Bone: maximum diameter0.10.30.3-0.6-0.60.6-0.3
Bone: maximum force0.20.31.0-0.00.2-0.21.0
Bone: maximum moment0.10.20.70.20.3-0.40.8
Mean time between licks in bursts0.40.60.9-1.0-0.90.8-0.3
Mean num. licks in bursts1.01.12.21.51.0-0.9-0.7
Cd content in liver1.81.94.00.71.2-1.32.0
Co content in liver1.01.21.50.91.2-1.21.1
Cu content in liver2.22.73.2-1.7-1.81.8-1.0
Fe content in liver0.70.81.2-1.1-1.01.0-0.2
K content in liver0.60.61.01.00.7-0.7-0.6
Mg content in liver0.10.10.20.40.4-0.40.2
Mn content in liver0.50.51.10.40.6-0.71.0
Na content in liver0.50.51.8-0.0-0.40.4-1.4
Rb content in liver0.81.02.40.30.9-0.91.6
Se content in liver0.00.00.0-0.1-0.10.1-0.2
Sr content in liver0.60.61.9-0.60.2-0.21.4
Zn content in liver0.20.20.6-0.40.0-0.10.8
Bone: minimum diameter0.71.31.90.91.1-1.11.4
Time in familiar zone, hab. session 10.00.00.0-0.2-0.10.1-0.1
Time in novel zone, hab. session 10.50.50.8-0.9-0.80.80.1
Total zone transitions, hab. session 10.30.50.8-0.9-0.60.60.5
Total locomotion distance, hab. session 10.60.82.8-0.00.5-0.51.7
Locomotion velocity, hab. session 10.81.22.40.61.0-1.01.6
Time in familiar zone, hab. session 20.60.61.70.70.3-0.2-1.3
Time in novel zone, hab. session 20.60.61.1-1.0-0.70.70.6
Total zone transitions, hab. session 20.40.51.0-0.5-0.60.7-1.0
Total locomotion distance, hab. session 20.30.40.60.30.6-0.60.8
Locomotion velocity, hab. session 20.40.50.70.50.8-0.80.8
Novel to familiar place preference ratio0.70.81.2-1.1-0.90.9-0.4
Novelty place preference0.70.71.4-1.2-0.90.90.0
Time in novel zone, NPP test0.30.30.5-0.7-0.60.6-0.1
Total zone transitions, NPP test0.30.40.60.80.7-0.7-0.0
Total locomotion distance, NPP test0.30.50.60.60.8-0.80.6
Locomotion velocity, NPP test0.30.40.60.40.6-0.70.8
Intraocular pressure0.20.30.4-0.7-0.40.40.5
Delta distance traveled before/after self-admin0.60.60.80.60.8-0.80.9
Delta ambulatory time before/after self-admin1.61.82.51.01.3-1.41.6
Parametrial fat weight0.10.10.3-0.6-0.40.40.0
Pavlov. Cond. lever latency0.60.72.4-0.20.5-0.61.5
Pavlov. Cond. magazine entry latency0.40.51.50.0-0.40.4-1.2
Pavlov. Cond. change in total contacts0.20.30.90.3-0.20.2-1.0
Pavlov. Cond. index score0.70.93.00.1-0.60.6-1.7
Pavlov. Cond. latency score0.60.72.30.1-0.50.5-1.5
Pavlov. Cond. lever contacts0.91.12.6-0.3-0.90.9-1.6
Pavlov. Cond. magazine entry number0.60.72.6-0.30.4-0.41.6
Pavlov. Cond. intertrial magazine entries6.67.910.33.23.2-3.11.3
Pavlov. Cond. lever-magazine prob. diff.0.70.82.60.1-0.50.6-1.6
Pavlov. Cond. response bias0.91.03.70.3-0.40.5-1.9
Pavlov. Cond. lever latency2.02.74.52.11.8-1.7-0.1
Pavlov. Cond. magazine entry latency3.13.64.5-2.1-2.12.1-1.2
Pavlov. Cond. change in total contacts4.56.28.8-3.0-2.82.7-0.8
Pavlov. Cond. index score3.54.56.3-2.5-2.42.3-0.7
Pavlov. Cond. latency score3.44.25.4-2.3-2.32.3-1.0
Pavlov. Cond. lever contacts2.43.35.1-2.3-2.02.0-0.4
Pavlov. Cond. magazine entry number2.63.24.32.12.0-2.00.8
Pavlov. Cond. intertrial magazine entries4.55.97.02.52.6-2.71.9
Pavlov. Cond. lever-magazine prob. diff.4.15.37.2-2.7-2.62.5-0.9
Pavlov. Cond. response bias2.53.44.9-2.2-2.12.0-0.5
Time in closed arm before self-admin5.76.49.8-3.1-2.82.8-0.6
Time in closed arm after self-admin4.14.27.8-2.8-2.12.00.9
Time in open arm before self-admin5.66.17.52.52.7-2.71.7
Time in open arm after self-admin6.97.612.83.63.0-2.9-0.0
Bone: periosteal estimation0.40.71.8-0.9-0.40.31.3
Bone: periosteal perimeter0.00.00.0-0.0-0.10.10.0
Bone: post-yield work2.02.83.31.81.8-1.81.2
Progressive ratio test 1 active lever presses0.10.10.2-0.3-0.10.10.4
Progressive ratio test 1 breakpoint0.10.10.2-0.4-0.30.20.2
Progressive ratio test 1 inactive lever presses2.72.93.31.51.8-1.81.7
Progressive ratio test 2 active lever presses0.00.00.1-0.2-0.10.10.3
Progressive ratio test 2 breakpoint0.00.00.2-0.10.1-0.10.4
Progressive ratio test 2 inactive lever presses0.60.72.2-0.00.4-0.51.5
Incentive Sensitization - Responses0.10.10.2-0.4-0.20.20.5
Incentive Sensitization - Breakpoint0.10.10.4-0.4-0.10.10.7
Sum of active levers in priming session hrs 5-60.70.71.3-0.5-0.70.8-1.1
Progressive ratio1.41.73.7-1.5-0.60.51.9
Food seeking constrained by brief footshock0.40.51.50.00.4-0.41.2
Seeking ratio, punishment vs. effort0.60.81.51.20.8-0.7-0.7
Retroperitoneal fat weight0.10.41.0-0.2-0.60.6-1.0
Reaction time number correct3.55.16.62.62.5-2.51.2
Reaction time mean minus median0.00.00.1-0.2-0.20.2-0.1
Reaction time mean minus median AUC0.00.00.1-0.2-0.10.10.3
Reaction time num false alarms1.41.93.01.71.5-1.50.4
Reaction time num false alarms AUC1.72.33.31.81.7-1.70.7
Reaction time trials correct on left3.55.16.62.62.5-2.51.2
Reaction time trials on left3.65.26.62.62.5-2.51.3
Reaction time mean1.31.93.5-1.9-1.41.40.3
Reaction time mean AUC0.81.12.2-1.5-1.01.00.4
Median of all reaction times1.21.63.1-1.8-1.21.10.7
Reaction time omissions1.41.92.61.01.4-1.41.6
Reaction time false alarm rate0.10.10.20.50.4-0.40.2
Reaction time premature initiation rate0.30.50.90.30.6-0.60.9
Reaction time premature initiations2.02.83.31.71.8-1.81.2
Std. dev. reaction times0.81.22.3-1.5-1.11.00.5
Reaction time trials completed3.65.26.62.62.5-2.51.3
Reaction time trials AUC3.75.47.02.62.6-2.51.3
Run reversals in cocaine runway, females2.22.13.3-1.8-1.61.6-0.3
Run reversals in cocaine runway, males0.10.10.4-0.10.0-0.10.6
Latency to leave start box in cocaine runway0.60.61.0-1.0-0.90.9-0.0
Latency to leave start box in cocaine runway, F0.50.50.8-0.5-0.70.8-0.9
Latency to leave start box in cocaine runway, M0.50.50.8-0.9-0.80.70.1
Std. dev. time between licks in bursts0.00.10.10.30.2-0.20.0
Total sessions with >9 infusions0.00.00.0-0.2-0.10.10.2
Short access day 1 total inactive lever presses0.10.10.4-0.20.0-0.00.6
Short access day 10 total inactive lever presses0.70.82.00.30.7-0.81.4
Short access day 1 total infusions0.30.31.0-0.10.2-0.31.0
Short access day 10 total infusions0.20.20.3-0.5-0.50.5-0.1
Short access total infusions0.40.50.8-0.9-0.70.60.4
Short access day 1 locomotion0.30.30.5-0.7-0.60.6-0.2
Short access day 10 total locomotion0.30.30.90.1-0.30.3-1.0
Short access total locomotion0.00.00.0-0.1-0.10.10.0
One hour access (0.3 mA shock)0.30.30.60.80.6-0.6-0.2
Compulsive drug intake0.50.50.90.90.5-0.5-0.8
One hour access (shock baseline)0.10.10.2-0.4-0.30.30.1
Social response proportion0.60.72.1-0.8-0.20.11.4
Social responses0.30.40.6-0.8-0.50.50.7
Social time1.72.27.6-0.20.7-0.82.8
Soleus weight1.33.97.22.71.8-1.7-1.4
Bone: stiffness1.11.72.01.21.4-1.41.2
Tibialis anterior weight0.61.92.81.71.6-1.50.1
Time to tail flick, vehicle, before self-admin1.41.52.51.61.3-1.3-0.2
Time to tail flick, vehicle, after self-admin0.60.61.11.10.7-0.7-0.6
Time to tail flick, test, before self-admin0.10.10.3-0.4-0.10.10.6
Time to tail flick, test, after self-admin3.43.55.82.42.1-2.00.1
Delta time to tail flick, vehicle, before/after SA0.10.10.30.50.3-0.3-0.3
Delta time to tail flick, test, before/after SA3.63.25.72.41.9-1.90.0
Tibia length0.10.30.50.70.5-0.50.2
Ambulatory time before self-admin1.11.11.3-1.0-1.21.2-0.8
Ambulatory time after self-admin0.10.10.2-0.4-0.30.20.3
Bone: tissue strength0.10.10.2-0.5-0.40.30.3
Total heroin consumption1.61.83.71.91.3-1.2-0.8
Bone: trabecular number0.20.40.50.70.7-0.70.4
Bone: trabecular spacing0.10.10.1-0.3-0.30.3-0.3
Bone: trabecular thickness0.00.10.10.30.3-0.30.1
Bone: trabecular tissue density0.00.00.1-0.1-0.00.1-0.3
Water consumed over 24 hours2.02.43.51.21.5-1.61.9
Number of responses in last shaping day0.50.50.8-0.9-0.80.8-0.1