Clba1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye intron excision ratio chr6_137706990_137709176 0.28 0.19 2.4e-03 0.2 0.17 0.14 0.08 5.8e-04 1.2e-03 3.5e-03 2.5e-02
2 Eye intron excision ratio chr6_137707688_137709176 0.25 0.17 3.2e-03 0.22 0.16 0.14 0.05 2.3e-04 1.8e-03 4.1e-03 6.5e-02
3 Eye mRNA stability Clba1 0.2 0.15 1.0e-02 0.12 0.09 0.07 0.02 6.0e-03 1.8e-02 3.5e-02 1.4e-01
4 Brain gene expression Clba1 0.02 0.02 9.3e-03 0.01 0.01 0 0.01 5.3e-02 3.0e-02 1.1e-01 6.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.1-0.30.3-0.3-0.1
Area under the delay curve0.60.60.70.8-0.80.80.9
BMI with tail2.07.010.32.4-2.42.43.2
BMI without tail1.02.95.61.4-1.41.42.4
Body weight1.66.97.9-2.82.8-2.8-2.0
Weight adjusted by age0.50.80.9-0.90.9-0.9-0.7
Bone surface0.00.10.20.3-0.30.30.4
Bone volume0.00.10.10.3-0.30.30.3
Breakpoint value in progressive ratio session0.10.10.1-0.40.4-0.4-0.2
Number of licking bursts0.50.90.91.0-1.01.00.8
Context. condit. distance diff. score3.54.34.7-2.02.0-2.0-2.2
Locomotion velocity, session 10.20.20.2-0.50.5-0.5-0.4
Locomotion distance, session 10.20.20.60.3-0.30.30.8
Locomotion velocity, session 20.20.20.30.5-0.50.50.3
Locomotion distance, session 20.50.70.70.8-0.80.80.8
Locomotion velocity, session 30.10.10.10.3-0.30.30.3
Locomotion distance, session 30.20.30.30.6-0.60.60.2
Stereotopy head waving bouts, day 30.00.00.0-0.10.1-0.1-0.2
Stereotopy head waving duration, day 30.10.20.2-0.40.4-0.4-0.4
Locomotion velocity, session 70.10.10.1-0.30.3-0.30.2
Locomotion distance, session 70.50.71.00.7-0.70.71.0
Stereotopy head waving bouts, day 72.12.42.6-1.61.6-1.6-1.4
Stereotopy head waving duration, day 71.11.31.3-1.21.2-1.2-1.1
Locomotion velocity, session 81.72.12.1-1.41.4-1.4-1.4
Locomotion distance, session 80.30.50.5-0.70.7-0.7-0.7
Degree of sensitization distance0.10.10.2-0.20.2-0.20.5
Degree of sensitization stereotypy0.90.91.0-1.01.0-1.0-0.9
Conditioned locomotion1.92.22.3-1.51.5-1.5-1.4
Cocaine response after cond. corrected0.10.10.4-0.00.0-0.00.6
Cocaine response after cond. not corrected0.70.81.50.8-0.80.81.2
Cocaine response before conditioning3.44.04.52.1-2.12.11.6
Saline control response0.10.10.1-0.30.3-0.3-0.3
Bone: connectivity density0.40.70.7-0.80.8-0.8-0.8
Bone: cortical apparent density5.37.27.8-2.62.6-2.6-2.8
Bone: cortical area0.20.30.4-0.60.6-0.6-0.4
Bone: cortical porosity0.30.40.8-0.40.4-0.4-0.9
Bone: cortical porosity0.00.10.10.1-0.10.1-0.4
Bone: cortical thickness0.81.41.6-1.31.3-1.3-0.8
Bone: cortical thickness0.80.90.9-1.01.0-1.0-0.9
Bone: cortical tissue density5.16.97.6-2.62.6-2.6-2.8
Condit. Reinf. active minus inactive responses0.10.20.60.1-0.10.10.8
Condit. Reinf. active-inactive response ratio1.41.52.61.1-1.11.11.6
Condit. Reinf. active responses0.20.20.3-0.50.5-0.50.2
Condit. Reinf. inactive responses1.92.32.4-1.51.5-1.5-1.5
Incentive salience index mean0.10.10.2-0.30.3-0.30.5
Condit. Reinf. lever presses0.00.00.1-0.20.2-0.2-0.0
Condit. Reinf. active minus inactive responses0.60.80.8-0.90.9-0.9-0.9
Condit. Reinf. active-inactive response ratio0.70.80.9-0.90.9-0.9-0.7
Condit. Reinf. active responses0.00.00.00.1-0.10.1-0.1
Condit. Reinf. inactive responses0.91.11.31.1-1.11.10.8
Condit. Reinf. lever presses2.53.53.92.0-2.02.01.5
Condit. Reinf. lever reinforcers received0.00.00.1-0.10.1-0.1-0.2
Conditioned reinforcement - actives0.10.20.3-0.40.4-0.4-0.6
Conditioned reinforcement - inactives0.40.60.7-0.80.8-0.8-0.6
Conditioned locomotion0.00.00.0-0.00.0-0.00.1
Patch foraging indifference point 0 sec5.710.610.9-3.33.3-3.3-3.1
Patch foraging indifference point AUC3.75.35.7-2.42.4-2.4-2.0
Delay disc. indifference point, 0s delay0.40.40.5-0.70.7-0.7-0.5
Delay disc. indifference point, 16s delay1.11.21.21.1-1.11.11.0
Delay disc. indifference point, 2s delay2.22.42.51.6-1.61.61.5
Delay disc. indifference point, 24s delay0.80.91.00.9-0.90.91.0
Delay disc. indifference point, 4s delay0.00.00.10.3-0.30.30.0
Delay disc. indifference point, 8s delay0.20.20.30.4-0.40.40.5
Indifference point function ln k0.40.71.2-0.70.7-0.7-1.1
Indifference point function log k0.40.71.2-0.70.7-0.7-1.1
Patch foraging total patch changes 0 sec6.412.112.4-3.53.5-3.5-3.4
Patch foraging total patch changes 12 sec3.54.55.0-2.12.1-2.1-2.2
Patch foraging total patch changes 18 sec2.03.13.4-1.91.9-1.9-1.5
Patch foraging total patch changes 24 sec0.50.80.9-0.90.9-0.9-1.0
Patch foraging total patch changes 6 sec4.36.66.8-2.62.6-2.6-2.4
Patch foraging time to switch 0 sec10.120.621.74.7-4.74.74.2
Patch foraging water rate 0 sec14.931.331.9-5.75.7-5.7-5.4
Patch foraging water rate 12 sec5.912.413.5-3.53.5-3.5-3.7
Patch foraging water rate 18 sec3.75.86.5-2.42.4-2.4-2.6
Patch foraging water rate 24 sec3.04.25.0-2.02.0-2.0-2.2
Patch foraging water rate 6 sec4.56.66.7-2.62.6-2.6-2.6
Seeking ratio, delayed vs. immediate footshock0.20.20.4-0.50.5-0.5-0.6
Distance traveled before self-admin0.50.70.70.8-0.80.80.8
Distance traveled after self-admin0.20.20.3-0.50.5-0.5-0.5
Extensor digitorum longus weight8.935.235.4-5.95.9-5.9-6.0
Bone: elastic displacement0.00.00.1-0.10.1-0.1-0.3
Bone: elastic work0.20.20.30.5-0.50.50.3
Bone: endosteal estimation1.02.22.61.6-1.61.61.1
Bone: endosteal perimeter0.20.50.60.8-0.80.80.6
Epididymis fat weight1.96.49.52.3-2.32.33.1
Delta time in closed arm before/after self-admin0.00.00.00.2-0.20.2-0.2
Delta time in open arm before/after self-admin1.31.21.5-1.21.2-1.2-0.8
Diff in mean of infusions in LGA sessions0.10.10.1-0.40.4-0.4-0.3
Delay discount exponential model param0.50.60.7-0.70.7-0.7-0.8
Extinction: sum of active levers before priming0.10.10.3-0.20.2-0.20.5
Active lever presses in extinction session 61.91.91.9-1.41.4-1.4-1.4
Bone: final force0.20.20.30.6-0.60.60.0
Bone: final moment0.10.10.10.3-0.30.3-0.1
Food consumed during 24 hour testing period0.81.11.2-1.11.1-1.1-0.9
Glucose0.10.20.2-0.40.4-0.4-0.4
Heart weight0.61.01.0-1.01.0-1.0-0.8
Delay discount hyperbolic model param0.60.60.7-0.80.8-0.8-0.8
Intermittent access intake day 1-15 change1.53.13.61.7-1.71.71.9
Intermittent access intake escalation1.42.93.81.6-1.61.61.9
Intermittent access intake escalation 20.80.91.60.8-0.80.81.3
Intermitt. access day 1 inactive lever presses0.31.31.5-1.21.2-1.2-0.9
Intermitt. access day 15 inactive lever presses2.14.34.8-2.22.2-2.2-1.7
Intermitt. access escalation Index0.20.30.9-0.40.4-0.4-1.0
Intermittent access day 1 total infusions0.10.10.20.3-0.30.30.4
Intermittent access day 15 total infusions1.11.62.01.2-1.21.21.4
Intermittent access terminal intake (last 3 days)1.31.72.51.2-1.21.21.6
Intermittent access total infusions0.40.50.70.6-0.60.60.8
Intermittent access day 1 locomotion0.70.91.10.9-0.90.91.1
Intermittent access day 15 total locomotion0.71.21.41.2-1.21.20.9
Intermittent access total locomotion0.30.30.50.5-0.50.50.7
Intermittent access standard deviation0.30.71.40.6-0.60.61.2
Left kidney weight1.98.811.6-2.82.8-2.8-3.4
Right kidney weight1.46.38.5-2.42.4-2.4-2.9
Cocaine induced anxiety0.60.91.3-0.90.9-0.9-1.1
Post-drug Anxiety1.81.92.6-1.31.3-1.3-1.6
Baseline Anxiety0.10.10.10.3-0.30.30.3
Tail length6.224.325.2-5.05.0-5.0-4.6
Length with tail9.742.443.2-6.66.6-6.6-6.3
Length without tail4.915.816.6-3.93.9-3.9-4.1
Times rat made contact with spout0.50.60.7-0.80.8-0.8-0.3
Lifetime Intake0.30.40.50.6-0.60.60.7
Liver weight, left3.05.05.5-2.22.2-2.2-2.3
Liver weight, right0.00.00.10.2-0.20.20.1
Locomotor activity0.10.10.3-0.10.1-0.1-0.6
Locomotor testing distance0.00.10.3-0.00.0-0.0-0.5
Locomotor testing rearing2.34.64.82.2-2.22.22.0
Locomotion in novel chamber2.83.63.8-1.91.9-1.9-2.0
Locomotion in novel chamber post-restriction0.00.10.10.3-0.30.30.2
Fecal boli incidents, locomotor time 10.30.51.20.5-0.50.51.1
Change in fecal boli incidents, locomotor task0.70.71.6-0.60.6-0.6-1.3
Time >=10cm from walls, locomotor time 10.60.60.6-0.80.8-0.8-0.6
Bouts of movement, locomotor time 11.01.12.00.9-0.90.91.4
Total resting periods, locomotor time 11.21.32.21.0-1.01.01.5
Rest time, locomotor task time 10.20.30.30.5-0.50.50.6
Distance moved, locomotor task time 10.40.50.60.8-0.80.80.5
Vertical activity count, locomotor time 10.00.10.10.2-0.20.2-0.4
Time >=10cm from walls, locomotor time 21.11.61.7-1.31.3-1.3-1.1
Bouts of movement, locomotor time 20.20.30.5-0.40.4-0.4-0.7
Total resting periods, locomotor time 20.10.10.3-0.20.2-0.2-0.5
Rest time, locomotor task time 20.00.00.0-0.00.0-0.00.0
Distance moved, locomotor task time 20.30.40.40.7-0.70.70.5
Vertical activity count, locomotor time 20.10.10.2-0.20.2-0.2-0.5
Light reinforcement 10.10.20.20.5-0.50.5-0.2
Light reinforcement 21.52.32.41.5-1.51.51.5
Bone: marrow area1.02.12.41.5-1.51.51.1
Bone: maximum diameter0.10.30.50.4-0.40.40.7
Bone: maximum force0.00.00.00.1-0.10.1-0.1
Bone: maximum moment0.00.00.0-0.20.2-0.2-0.2
Mean time between licks in bursts0.41.01.11.1-1.11.10.7
Mean num. licks in bursts1.11.72.0-1.41.4-1.4-0.9
Cd content in liver0.00.00.0-0.20.2-0.2-0.2
Co content in liver1.82.12.4-1.51.5-1.5-1.1
Cu content in liver1.61.92.01.4-1.41.41.4
Fe content in liver0.70.80.90.9-0.90.90.8
K content in liver0.40.40.5-0.60.6-0.6-0.7
Mg content in liver0.10.10.20.0-0.00.0-0.5
Mn content in liver0.20.20.30.6-0.60.6-0.1
Na content in liver0.90.91.01.0-1.01.00.8
Rb content in liver0.20.20.7-0.20.2-0.2-0.8
Se content in liver0.20.20.20.5-0.50.50.3
Sr content in liver0.00.00.00.1-0.10.10.0
Zn content in liver0.50.60.6-0.80.8-0.8-0.7
Bone: minimum diameter0.40.81.1-0.90.9-0.9-1.0
Time in familiar zone, hab. session 10.00.00.0-0.10.1-0.10.1
Time in novel zone, hab. session 11.01.01.21.1-1.11.10.7
Total zone transitions, hab. session 10.81.11.31.1-1.11.10.6
Total locomotion distance, hab. session 10.10.10.40.2-0.20.2-0.6
Locomotion velocity, hab. session 10.30.41.1-0.40.4-0.4-1.0
Time in familiar zone, hab. session 20.10.10.1-0.40.4-0.4-0.1
Time in novel zone, hab. session 20.70.70.70.9-0.90.90.7
Total zone transitions, hab. session 20.10.10.60.0-0.00.00.8
Total locomotion distance, hab. session 20.40.50.5-0.70.7-0.7-0.6
Locomotion velocity, hab. session 20.50.70.8-0.90.9-0.9-0.7
Novel to familiar place preference ratio0.70.70.90.8-0.80.81.0
Novelty place preference0.60.60.80.8-0.80.80.9
Time in novel zone, NPP test0.20.30.30.5-0.50.50.6
Total zone transitions, NPP test0.60.81.0-1.01.0-1.0-0.6
Total locomotion distance, NPP test0.40.50.6-0.70.7-0.7-0.7
Locomotion velocity, NPP test0.40.60.7-0.80.8-0.8-0.6
Intraocular pressure0.00.00.1-0.00.0-0.00.3
Delta distance traveled before/after self-admin0.10.10.1-0.30.3-0.3-0.3
Delta ambulatory time before/after self-admin0.80.91.0-1.01.0-1.0-1.0
Parametrial fat weight0.00.10.10.4-0.40.40.2
Pavlov. Cond. lever latency0.10.20.5-0.20.2-0.2-0.7
Pavlov. Cond. magazine entry latency0.00.00.10.0-0.00.00.3
Pavlov. Cond. change in total contacts0.00.00.1-0.00.0-0.00.3
Pavlov. Cond. index score0.10.10.40.1-0.10.10.6
Pavlov. Cond. latency score0.10.10.30.1-0.10.10.6
Pavlov. Cond. lever contacts0.50.61.10.7-0.70.71.0
Pavlov. Cond. magazine entry number0.00.10.2-0.00.0-0.0-0.4
Pavlov. Cond. intertrial magazine entries8.510.110.6-3.33.3-3.3-3.0
Pavlov. Cond. lever-magazine prob. diff.0.10.10.40.1-0.10.10.6
Pavlov. Cond. response bias0.10.10.40.0-0.00.00.6
Pavlov. Cond. lever latency2.94.04.3-2.12.1-2.1-1.8
Pavlov. Cond. magazine entry latency3.23.94.51.9-1.91.92.1
Pavlov. Cond. change in total contacts4.57.27.42.7-2.72.72.7
Pavlov. Cond. index score4.45.96.02.4-2.42.42.4
Pavlov. Cond. latency score4.35.75.72.4-2.42.42.4
Pavlov. Cond. lever contacts3.54.85.02.2-2.22.22.0
Pavlov. Cond. magazine entry number2.93.64.3-1.81.8-1.8-2.1
Pavlov. Cond. intertrial magazine entries4.66.97.2-2.62.6-2.6-2.7
Pavlov. Cond. lever-magazine prob. diff.5.16.86.92.6-2.62.62.5
Pavlov. Cond. response bias3.24.44.42.1-2.12.12.0
Time in closed arm before self-admin6.07.77.92.8-2.82.82.7
Time in closed arm after self-admin4.85.25.82.4-2.42.41.8
Time in open arm before self-admin4.34.75.6-2.12.1-2.1-2.4
Time in open arm after self-admin7.68.48.9-3.03.0-3.0-2.6
Bone: periosteal estimation0.10.20.30.5-0.50.50.3
Bone: periosteal perimeter0.00.00.10.2-0.20.20.2
Bone: post-yield work2.23.33.4-1.81.8-1.8-1.8
Progressive ratio test 1 active lever presses0.30.40.50.7-0.70.70.6
Progressive ratio test 1 breakpoint0.40.50.50.7-0.70.70.7
Progressive ratio test 1 inactive lever presses1.62.32.4-1.51.5-1.5-1.6
Progressive ratio test 2 active lever presses0.50.60.70.8-0.80.80.4
Progressive ratio test 2 breakpoint0.40.50.60.8-0.80.80.3
Progressive ratio test 2 inactive lever presses0.00.00.1-0.10.1-0.1-0.4
Incentive Sensitization - Responses0.30.40.50.7-0.70.70.2
Incentive Sensitization - Breakpoint0.30.30.40.7-0.70.70.2
Sum of active levers in priming session hrs 5-60.50.40.5-0.70.7-0.7-0.4
Progressive ratio0.71.11.31.1-1.11.10.6
Food seeking constrained by brief footshock0.40.50.6-0.80.8-0.8-0.5
Seeking ratio, punishment vs. effort1.11.61.9-1.41.4-1.4-0.7
Retroperitoneal fat weight0.00.10.3-0.00.0-0.00.5
Reaction time number correct2.95.66.1-2.32.3-2.3-2.5
Reaction time mean minus median0.00.00.0-0.00.0-0.00.1
Reaction time mean minus median AUC0.00.00.0-0.10.1-0.1-0.0
Reaction time num false alarms2.43.43.8-1.91.9-1.9-1.5
Reaction time num false alarms AUC2.33.63.9-2.02.0-2.0-1.6
Reaction time trials correct on left2.95.66.1-2.32.3-2.3-2.5
Reaction time trials on left3.05.76.2-2.42.4-2.4-2.5
Reaction time mean0.71.11.31.0-1.01.01.1
Reaction time mean AUC0.30.50.60.7-0.70.70.8
Median of all reaction times0.60.90.90.9-0.90.90.9
Reaction time omissions0.50.81.0-0.80.8-0.8-1.0
Reaction time false alarm rate0.40.50.6-0.80.8-0.8-0.4
Reaction time premature initiation rate0.20.20.6-0.30.3-0.3-0.8
Reaction time premature initiations1.52.63.8-1.51.5-1.5-1.9
Std. dev. reaction times0.30.60.60.8-0.80.80.8
Reaction time trials completed3.05.76.2-2.42.4-2.4-2.5
Reaction time trials AUC3.15.86.5-2.42.4-2.4-2.5
Run reversals in cocaine runway, females1.11.11.21.0-1.01.01.1
Run reversals in cocaine runway, males0.00.00.00.1-0.10.1-0.2
Latency to leave start box in cocaine runway0.80.90.91.0-1.01.00.9
Latency to leave start box in cocaine runway, F0.80.91.01.0-1.01.00.8
Latency to leave start box in cocaine runway, M0.20.10.30.3-0.30.30.6
Std. dev. time between licks in bursts0.00.00.00.1-0.10.1-0.2
Total sessions with >9 infusions0.60.80.80.9-0.90.90.8
Short access day 1 total inactive lever presses0.00.00.0-0.20.2-0.2-0.1
Short access day 10 total inactive lever presses0.10.30.3-0.50.5-0.5-0.4
Short access day 1 total infusions0.00.00.00.1-0.10.1-0.0
Short access day 10 total infusions0.50.70.90.8-0.80.80.9
Short access total infusions0.81.01.11.1-1.11.10.9
Short access day 1 locomotion0.80.91.01.0-1.01.00.9
Short access day 10 total locomotion0.40.71.40.7-0.70.71.2
Short access total locomotion0.40.50.50.7-0.70.70.7
One hour access (0.3 mA shock)0.20.20.2-0.50.5-0.5-0.2
Compulsive drug intake0.91.11.2-1.11.1-1.1-0.8
One hour access (shock baseline)0.00.00.00.0-0.00.00.2
Social response proportion0.60.70.91.0-1.01.00.0
Social responses0.40.50.60.8-0.80.80.4
Social time0.30.40.9-0.40.4-0.4-0.9
Soleus weight1.33.74.3-2.12.1-2.1-1.5
Bone: stiffness0.60.91.2-0.90.9-0.9-1.1
Tibialis anterior weight0.72.32.5-1.61.6-1.6-1.2
Time to tail flick, vehicle, before self-admin1.31.41.6-1.31.3-1.3-0.8
Time to tail flick, vehicle, after self-admin0.00.00.00.0-0.00.00.2
Time to tail flick, test, before self-admin0.40.50.50.7-0.70.70.6
Time to tail flick, test, after self-admin1.31.31.6-1.11.1-1.1-1.3
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.10.1-0.1-0.1
Delta time to tail flick, test, before/after SA2.12.12.2-1.41.4-1.4-1.5
Tibia length0.10.30.4-0.50.5-0.5-0.6
Ambulatory time before self-admin0.81.21.21.1-1.11.11.0
Ambulatory time after self-admin0.00.00.00.2-0.20.20.2
Bone: tissue strength0.00.00.0-0.10.1-0.10.2
Total heroin consumption3.84.54.9-2.22.2-2.2-1.8
Bone: trabecular number0.20.40.4-0.60.6-0.6-0.6
Bone: trabecular spacing0.10.10.10.4-0.40.40.3
Bone: trabecular thickness0.00.00.0-0.10.1-0.10.0
Bone: trabecular tissue density0.00.10.10.2-0.20.20.3
Water consumed over 24 hours1.11.52.0-1.21.2-1.2-1.4
Number of responses in last shaping day0.00.00.00.1-0.10.10.1