Cimip2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS XM_063288530.1 0.03 0.03 2.0e-03 0.01 0.01 0.02 0.01 2.8e-02 1.1e-02 4.4e-03 4.1e-02
2 Brain isoform ratio XM_063288529.1 0.04 0.03 4.3e-03 0.02 0.03 0.01 0.02 2.5e-03 2.2e-03 1.2e-02 4.4e-03
3 Liver alternative TSS XM_063288533.1 0.04 0.03 1.6e-03 0.01 0.01 0.02 0.01 8.0e-03 7.6e-03 3.1e-03 2.3e-02
4 PL gene expression Cimip2b 0.05 0.05 3.1e-03 0.01 0.02 0.02 0.01 3.8e-02 4.7e-03 2.5e-03 1.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.91.72.2-1.3-1.11.3-1.5
Area under the delay curve0.50.71.90.90.5-1.40.3
BMI with tail1.34.44.7-2.2-2.12.2-2.0
BMI without tail1.05.26.9-2.6-2.52.6-0.9
Body weight3.013.017.4-4.2-4.24.0-1.3
Weight adjusted by age0.20.50.8-0.8-0.70.9-0.4
Bone surface0.71.41.7-1.3-1.21.2-1.0
Bone volume0.51.01.2-1.0-0.91.0-1.1
Breakpoint value in progressive ratio session0.40.62.4-0.2-0.2-0.11.6
Number of licking bursts1.44.26.2-2.3-2.12.5-1.0
Context. condit. distance diff. score0.10.10.20.40.5-0.40.0
Locomotion velocity, session 11.61.83.1-1.5-1.80.81.0
Locomotion distance, session 10.60.71.3-1.0-1.20.50.5
Locomotion velocity, session 21.82.12.7-1.5-1.41.3-1.6
Locomotion distance, session 22.33.24.6-2.0-2.11.90.8
Locomotion velocity, session 30.30.30.5-0.5-0.70.20.6
Locomotion distance, session 32.32.63.7-1.9-1.91.5-0.9
Stereotopy head waving bouts, day 30.81.03.7-0.2-0.30.31.9
Stereotopy head waving duration, day 30.60.72.80.30.2-0.01.7
Locomotion velocity, session 70.10.10.20.30.3-0.4-0.0
Locomotion distance, session 70.20.30.5-0.7-0.70.4-0.3
Stereotopy head waving bouts, day 71.31.52.0-1.4-1.41.4-0.3
Stereotopy head waving duration, day 70.70.91.3-1.0-1.01.10.4
Locomotion velocity, session 80.70.92.9-0.4-0.50.31.7
Locomotion distance, session 80.50.71.2-0.8-0.90.71.1
Degree of sensitization distance1.11.21.41.21.2-1.11.0
Degree of sensitization stereotypy1.31.51.6-1.2-1.21.2-1.1
Conditioned locomotion0.10.10.2-0.0-0.3-0.4-0.4
Cocaine response after cond. corrected0.71.11.50.90.8-1.21.1
Cocaine response after cond. not corrected0.91.23.60.60.5-0.81.9
Cocaine response before conditioning0.81.01.7-0.9-0.91.30.7
Saline control response1.11.62.2-1.5-1.41.30.7
Bone: connectivity density0.61.02.8-0.7-0.60.7-1.7
Bone: cortical apparent density0.10.20.30.50.6-0.2-0.4
Bone: cortical area1.42.23.0-1.5-1.41.7-1.3
Bone: cortical porosity0.20.20.20.50.5-0.50.1
Bone: cortical porosity0.00.00.0-0.1-0.10.0-0.2
Bone: cortical thickness0.40.72.2-0.4-0.30.7-1.5
Bone: cortical thickness0.30.40.70.80.8-0.50.3
Bone: cortical tissue density0.10.20.40.50.6-0.2-0.3
Condit. Reinf. active minus inactive responses0.30.40.5-0.7-0.60.7-0.2
Condit. Reinf. active-inactive response ratio0.60.60.90.90.9-0.80.5
Condit. Reinf. active responses2.02.63.7-1.8-1.71.9-0.7
Condit. Reinf. inactive responses2.33.04.8-1.9-1.82.2-0.5
Incentive salience index mean3.64.66.1-2.5-2.42.4-0.9
Condit. Reinf. lever presses8.713.017.7-4.2-4.23.9-1.2
Condit. Reinf. active minus inactive responses0.40.61.1-0.7-0.70.6-1.1
Condit. Reinf. active-inactive response ratio0.30.41.7-0.10.0-0.0-1.3
Condit. Reinf. active responses1.62.22.7-1.6-1.61.6-1.1
Condit. Reinf. inactive responses1.52.23.2-1.6-1.71.8-0.6
Condit. Reinf. lever presses1.42.12.5-1.4-1.41.6-1.4
Condit. Reinf. lever reinforcers received1.92.63.2-1.8-1.81.7-1.1
Conditioned reinforcement - actives0.31.24.4-0.2-0.1-0.4-2.1
Conditioned reinforcement - inactives0.10.30.70.50.5-0.8-0.5
Conditioned locomotion0.81.34.5-0.2-0.3-0.6-2.1
Patch foraging indifference point 0 sec0.30.91.9-1.0-1.40.5-0.7
Patch foraging indifference point AUC4.410.614.1-3.8-3.63.3-2.2
Delay disc. indifference point, 0s delay0.80.91.70.80.7-0.81.3
Delay disc. indifference point, 16s delay0.60.92.30.90.5-1.50.5
Delay disc. indifference point, 2s delay0.00.00.00.20.0-0.2-0.2
Delay disc. indifference point, 24s delay0.10.20.30.40.3-0.50.5
Delay disc. indifference point, 4s delay0.30.30.90.50.2-1.0-0.3
Delay disc. indifference point, 8s delay0.00.10.10.0-0.2-0.4-0.3
Indifference point function ln k1.23.74.92.22.0-1.81.6
Indifference point function log k1.23.74.92.22.0-1.81.6
Patch foraging total patch changes 0 sec0.51.62.8-1.4-1.70.9-0.9
Patch foraging total patch changes 12 sec2.53.34.2-1.8-1.71.7-2.1
Patch foraging total patch changes 18 sec0.51.21.6-1.3-1.21.1-0.8
Patch foraging total patch changes 24 sec1.24.14.6-2.2-2.11.8-2.0
Patch foraging total patch changes 6 sec2.74.66.3-2.4-2.51.8-1.7
Patch foraging time to switch 0 sec1.24.46.02.42.4-2.11.2
Patch foraging water rate 0 sec0.83.14.0-1.9-2.01.5-1.6
Patch foraging water rate 12 sec0.00.00.1-0.1-0.30.10.3
Patch foraging water rate 18 sec0.30.62.1-0.3-0.30.3-1.5
Patch foraging water rate 24 sec0.71.03.00.50.6-0.7-1.7
Patch foraging water rate 6 sec0.50.81.3-1.0-1.01.10.3
Seeking ratio, delayed vs. immediate footshock2.53.64.4-1.9-1.91.7-2.1
Distance traveled before self-admin1.84.05.9-2.2-2.42.30.1
Distance traveled after self-admin0.30.50.7-0.7-0.80.8-0.3
Extensor digitorum longus weight4.116.220.8-4.5-4.64.3-2.3
Bone: elastic displacement4.86.18.72.93.0-2.70.1
Bone: elastic work3.44.46.52.52.6-2.0-1.0
Bone: endosteal estimation1.33.24.6-2.1-2.02.00.1
Bone: endosteal perimeter1.12.84.1-2.0-2.01.7-0.1
Epididymis fat weight0.20.91.3-1.1-1.01.10.1
Delta time in closed arm before/after self-admin0.30.30.7-0.4-0.20.8-0.4
Delta time in open arm before/after self-admin0.20.20.50.40.2-0.7-0.2
Diff in mean of infusions in LGA sessions0.10.20.30.30.6-0.10.6
Delay discount exponential model param0.50.61.7-0.8-0.41.3-0.2
Extinction: sum of active levers before priming2.33.55.32.01.7-2.31.5
Active lever presses in extinction session 60.30.30.40.40.5-0.7-0.7
Bone: final force1.32.13.5-1.6-1.51.90.2
Bone: final moment1.01.62.8-1.4-1.31.70.2
Food consumed during 24 hour testing period0.51.01.4-1.1-1.21.10.4
Glucose2.43.74.9-2.2-2.22.2-0.8
Heart weight0.50.81.2-1.0-1.11.00.2
Delay discount hyperbolic model param0.40.51.4-0.6-0.21.2-0.1
Intermittent access intake day 1-15 change0.10.71.1-0.9-0.71.1-0.6
Intermittent access intake escalation0.10.50.8-0.7-0.50.9-0.6
Intermittent access intake escalation 20.50.81.8-0.7-0.40.8-1.3
Intermitt. access day 1 inactive lever presses0.11.42.0-1.3-1.41.30.4
Intermitt. access day 15 inactive lever presses0.00.10.1-0.3-0.40.30.3
Intermitt. access escalation Index0.61.83.3-0.9-1.01.41.8
Intermittent access day 1 total infusions0.41.22.20.90.9-1.5-1.0
Intermittent access day 15 total infusions0.30.83.0-0.20.0-0.0-1.7
Intermittent access terminal intake (last 3 days)0.40.72.7-0.5-0.10.2-1.6
Intermittent access total infusions0.91.03.9-0.4-0.2-0.1-2.0
Intermittent access day 1 locomotion1.12.03.61.00.8-1.9-1.6
Intermittent access day 15 total locomotion0.31.32.20.80.9-1.3-1.5
Intermittent access total locomotion2.22.73.81.31.3-1.9-2.0
Intermittent access standard deviation0.10.40.9-0.5-0.60.4-1.0
Left kidney weight0.43.04.5-2.0-2.11.70.8
Right kidney weight0.21.42.2-1.5-1.51.0-0.4
Cocaine induced anxiety0.20.41.20.50.4-0.31.1
Post-drug Anxiety1.21.42.8-0.8-0.91.11.7
Baseline Anxiety0.30.50.9-0.8-0.90.70.1
Tail length1.26.38.9-3.0-2.82.8-0.3
Length with tail1.66.910.2-3.2-3.22.7-0.3
Length without tail0.10.40.8-0.7-0.90.40.0
Times rat made contact with spout0.30.30.7-0.4-0.30.5-0.8
Lifetime Intake0.81.03.4-0.5-0.3-0.1-1.9
Liver weight, left0.20.31.2-0.1-0.10.21.1
Liver weight, right0.81.42.01.41.3-1.4-0.0
Locomotor activity0.00.10.3-0.1-0.1-0.00.5
Locomotor testing distance0.20.52.10.1-0.0-0.21.4
Locomotor testing rearing0.31.31.4-1.2-1.21.21.0
Locomotion in novel chamber0.81.11.71.00.9-1.3-0.8
Locomotion in novel chamber post-restriction0.41.21.7-1.1-0.61.3-1.2
Fecal boli incidents, locomotor time 10.41.21.81.21.1-1.3-0.4
Change in fecal boli incidents, locomotor task0.90.91.6-1.3-1.01.10.1
Time >=10cm from walls, locomotor time 10.30.41.1-0.3-0.60.51.0
Bouts of movement, locomotor time 11.62.02.51.61.5-1.60.9
Total resting periods, locomotor time 12.22.63.41.81.8-1.70.7
Rest time, locomotor task time 11.22.03.81.52.0-1.3-0.3
Distance moved, locomotor task time 10.92.64.3-1.9-2.11.70.0
Vertical activity count, locomotor time 10.42.93.5-1.7-1.91.81.4
Time >=10cm from walls, locomotor time 20.10.20.3-0.5-0.50.60.3
Bouts of movement, locomotor time 20.10.20.7-0.4-0.80.1-0.3
Total resting periods, locomotor time 20.00.10.2-0.0-0.4-0.2-0.4
Rest time, locomotor task time 20.50.81.51.01.2-0.90.1
Distance moved, locomotor task time 20.30.30.6-0.6-0.60.8-0.0
Vertical activity count, locomotor time 20.61.42.3-1.2-1.11.51.0
Light reinforcement 10.94.26.5-1.8-2.21.42.5
Light reinforcement 21.32.94.9-1.6-1.61.22.2
Bone: marrow area1.33.24.6-2.1-2.02.1-0.0
Bone: maximum diameter1.73.54.8-2.1-1.92.2-1.0
Bone: maximum force2.14.15.8-2.3-2.22.4-0.5
Bone: maximum moment1.63.14.7-2.0-1.92.2-0.5
Mean time between licks in bursts0.21.34.20.70.7-0.32.0
Mean num. licks in bursts0.82.23.11.71.6-1.80.3
Cd content in liver1.21.31.9-1.3-1.11.40.5
Co content in liver0.60.72.50.40.3-0.21.6
Cu content in liver1.92.22.91.51.5-1.21.7
Fe content in liver0.81.02.20.70.5-1.01.5
K content in liver0.10.10.40.20.1-0.20.6
Mg content in liver0.30.30.50.70.7-0.60.1
Mn content in liver0.70.81.0-0.9-0.81.0-0.8
Na content in liver2.52.87.11.31.3-0.82.7
Rb content in liver4.35.06.32.52.4-2.41.5
Se content in liver1.51.82.6-1.6-1.41.5-0.4
Sr content in liver0.60.50.7-0.8-0.80.80.2
Zn content in liver0.00.00.0-0.2-0.10.10.1
Bone: minimum diameter0.10.10.30.20.3-0.2-0.6
Time in familiar zone, hab. session 11.41.62.11.21.4-0.9-1.5
Time in novel zone, hab. session 11.82.07.10.50.3-0.72.7
Total zone transitions, hab. session 10.00.00.1-0.1-0.10.10.3
Total locomotion distance, hab. session 10.10.20.4-0.3-0.20.7-0.4
Locomotion velocity, hab. session 10.91.32.3-1.2-1.11.5-0.6
Time in familiar zone, hab. session 21.01.11.91.31.4-1.0-0.3
Time in novel zone, hab. session 20.60.71.50.60.4-0.81.2
Total zone transitions, hab. session 20.70.91.4-1.1-1.20.90.3
Total locomotion distance, hab. session 20.70.91.3-1.1-1.01.1-0.2
Locomotion velocity, hab. session 20.91.21.7-1.3-1.21.3-0.4
Novel to familiar place preference ratio1.72.32.81.61.3-1.71.4
Novelty place preference2.53.34.11.91.7-2.01.4
Time in novel zone, NPP test3.44.15.02.21.9-2.21.7
Total zone transitions, NPP test0.91.32.0-1.3-1.41.10.6
Total locomotion distance, NPP test2.02.74.1-2.0-2.01.7-0.3
Locomotion velocity, NPP test2.43.44.9-2.2-2.21.9-0.8
Intraocular pressure2.33.85.0-2.2-2.22.1-1.0
Delta distance traveled before/after self-admin0.20.20.30.50.5-0.40.5
Delta ambulatory time before/after self-admin0.50.91.31.01.1-0.80.8
Parametrial fat weight0.20.41.70.1-0.2-0.11.3
Pavlov. Cond. lever latency5.87.410.13.23.1-2.91.1
Pavlov. Cond. magazine entry latency0.40.50.7-0.8-0.80.8-0.2
Pavlov. Cond. change in total contacts2.42.63.6-1.9-1.91.7-0.9
Pavlov. Cond. index score2.63.34.5-2.1-2.02.0-0.7
Pavlov. Cond. latency score2.43.14.2-2.0-2.01.9-0.8
Pavlov. Cond. lever contacts5.46.58.5-2.9-2.92.7-1.4
Pavlov. Cond. magazine entry number0.50.60.70.80.8-0.90.5
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.5-0.50.6-0.2
Pavlov. Cond. lever-magazine prob. diff.2.53.04.1-2.0-1.91.9-0.9
Pavlov. Cond. response bias3.24.05.4-2.3-2.32.2-0.8
Pavlov. Cond. lever latency1.42.02.91.51.4-1.71.0
Pavlov. Cond. magazine entry latency0.30.50.60.70.8-0.60.6
Pavlov. Cond. change in total contacts0.10.30.6-0.3-0.20.8-0.5
Pavlov. Cond. index score0.00.00.2-0.10.00.4-0.2
Pavlov. Cond. latency score0.10.10.3-0.1-0.00.4-0.6
Pavlov. Cond. lever contacts1.01.42.2-1.2-1.21.5-0.8
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.4-0.10.3
Pavlov. Cond. intertrial magazine entries0.20.50.6-0.8-0.70.7-0.6
Pavlov. Cond. lever-magazine prob. diff.0.00.10.2-0.00.10.4-0.2
Pavlov. Cond. response bias0.30.40.8-0.5-0.50.9-0.3
Time in closed arm before self-admin0.61.12.01.00.7-1.4-0.8
Time in closed arm after self-admin0.30.30.80.60.9-0.2-0.1
Time in open arm before self-admin1.72.12.9-1.7-1.41.70.7
Time in open arm after self-admin1.01.11.9-1.2-1.40.8-0.6
Bone: periosteal estimation1.43.34.7-2.1-1.92.2-0.5
Bone: periosteal perimeter0.51.01.5-1.2-1.21.0-0.2
Bone: post-yield work2.13.65.1-2.3-2.22.10.2
Progressive ratio test 1 active lever presses0.40.72.10.10.2-0.7-1.4
Progressive ratio test 1 breakpoint0.40.62.1-0.00.2-0.6-1.4
Progressive ratio test 1 inactive lever presses0.51.22.1-1.4-1.50.9-0.2
Progressive ratio test 2 active lever presses0.40.61.50.20.4-0.9-1.2
Progressive ratio test 2 breakpoint0.50.71.60.20.4-1.0-1.2
Progressive ratio test 2 inactive lever presses0.31.03.3-0.7-0.30.2-1.8
Incentive Sensitization - Responses0.00.10.30.30.3-0.60.1
Incentive Sensitization - Breakpoint0.10.20.40.40.3-0.60.0
Sum of active levers in priming session hrs 5-62.01.92.91.41.2-1.71.1
Progressive ratio0.00.10.20.0-0.1-0.4-0.3
Food seeking constrained by brief footshock6.17.712.5-3.0-3.52.7-1.3
Seeking ratio, punishment vs. effort1.02.33.5-1.7-1.71.9-0.4
Retroperitoneal fat weight0.41.82.31.51.5-1.01.3
Reaction time number correct0.10.20.3-0.5-0.60.2-0.5
Reaction time mean minus median0.00.20.30.20.30.5-0.6
Reaction time mean minus median AUC0.10.40.8-0.5-0.30.9-0.8
Reaction time num false alarms0.10.10.40.00.1-0.1-0.6
Reaction time num false alarms AUC0.20.40.7-0.6-0.70.4-0.8
Reaction time trials correct on left0.10.20.3-0.5-0.60.2-0.5
Reaction time trials on left0.00.10.2-0.4-0.50.1-0.4
Reaction time mean1.02.33.91.82.0-1.20.8
Reaction time mean AUC1.12.64.51.92.1-1.40.6
Median of all reaction times2.53.95.72.32.4-1.81.3
Reaction time omissions1.42.32.61.61.6-1.31.6
Reaction time false alarm rate0.10.10.10.20.3-0.2-0.3
Reaction time premature initiation rate2.13.24.92.22.2-1.80.3
Reaction time premature initiations0.72.13.21.81.7-1.5-0.0
Std. dev. reaction times0.20.51.10.91.0-0.20.3
Reaction time trials completed0.00.10.2-0.4-0.50.1-0.4
Reaction time trials AUC0.00.10.2-0.4-0.50.1-0.4
Run reversals in cocaine runway, females0.00.00.1-0.10.20.30.3
Run reversals in cocaine runway, males0.10.20.30.30.3-0.4-0.6
Latency to leave start box in cocaine runway0.30.40.5-0.6-0.70.5-0.7
Latency to leave start box in cocaine runway, F0.10.10.30.20.1-0.5-0.4
Latency to leave start box in cocaine runway, M1.61.52.2-1.3-1.51.4-0.2
Std. dev. time between licks in bursts0.20.40.50.70.7-0.70.4
Total sessions with >9 infusions0.40.51.4-0.4-0.4-0.4-1.2
Short access day 1 total inactive lever presses0.40.81.4-1.1-1.20.6-0.5
Short access day 10 total inactive lever presses0.10.61.2-0.7-0.81.10.3
Short access day 1 total infusions0.20.40.6-0.7-0.6-0.0-0.7
Short access day 10 total infusions0.10.10.2-0.3-0.3-0.1-0.5
Short access total infusions0.20.20.7-0.2-0.2-0.5-0.8
Short access day 1 locomotion0.91.54.01.00.8-2.0-0.8
Short access day 10 total locomotion0.62.54.01.51.3-2.0-1.5
Short access total locomotion0.50.71.70.60.3-1.3-0.9
One hour access (0.3 mA shock)0.91.12.7-1.0-0.70.5-1.6
Compulsive drug intake0.10.20.3-0.3-0.20.5-0.5
One hour access (shock baseline)0.30.71.8-0.8-0.60.2-1.3
Social response proportion2.73.56.31.71.9-1.12.5
Social responses0.70.91.1-1.0-0.91.00.7
Social time1.11.76.70.10.20.22.6
Soleus weight0.72.16.3-0.9-1.10.62.5
Bone: stiffness3.05.48.1-2.7-2.52.80.1
Tibialis anterior weight6.923.832.1-5.6-5.75.5-1.2
Time to tail flick, vehicle, before self-admin0.81.01.40.70.9-1.1-1.2
Time to tail flick, vehicle, after self-admin0.10.20.7-0.10.00.2-0.9
Time to tail flick, test, before self-admin0.30.40.4-0.6-0.60.6-0.6
Time to tail flick, test, after self-admin2.32.56.4-1.1-0.91.2-2.5
Delta time to tail flick, vehicle, before/after SA0.50.60.9-0.5-0.40.90.9
Delta time to tail flick, test, before/after SA0.40.51.60.30.4-0.3-1.3
Tibia length0.51.34.2-0.6-0.70.52.0
Ambulatory time before self-admin1.13.34.7-2.1-2.22.0-0.3
Ambulatory time after self-admin0.20.40.5-0.7-0.70.6-0.2
Bone: tissue strength0.50.51.5-0.2-0.30.61.2
Total heroin consumption0.60.71.10.80.5-1.00.9
Bone: trabecular number0.71.21.5-1.1-0.91.2-1.2
Bone: trabecular spacing0.00.00.10.20.3-0.0-0.0
Bone: trabecular thickness0.20.30.40.50.5-0.6-0.7
Bone: trabecular tissue density2.34.15.5-2.3-2.32.40.8
Water consumed over 24 hours0.40.81.0-0.8-0.80.8-1.0
Number of responses in last shaping day0.40.51.6-0.3-0.7-0.11.3