Cimip2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS XM_063288530.1 0.03 0.03 2.0e-03 0.01 0.01 0.02 0.01 2.8e-02 1.1e-02 4.5e-03 4.1e-02
2 Brain isoform ratio XM_063288529.1 0.04 0.03 4.3e-03 0.02 0.03 0.01 0.02 2.5e-03 2.2e-03 1.2e-02 4.7e-03
3 Liver alternative TSS XM_063288533.1 0.04 0.03 1.6e-03 0.01 0.01 0.02 0.01 8.0e-03 7.6e-03 3.0e-03 2.3e-02
4 PL gene expression Cimip2b 0.05 0.05 3.1e-03 0.01 0.02 0.02 0.01 3.8e-02 4.7e-03 2.5e-03 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.72.11.3-1.1-1.31.4
Area under the delay curve0.60.71.9-0.90.51.4-0.2
BMI with tail1.34.44.72.2-2.1-2.21.9
BMI without tail1.75.27.02.6-2.5-2.60.8
Body weight3.012.917.44.2-4.2-4.01.1
Weight adjusted by age0.30.50.80.8-0.7-0.90.4
Bone surface0.71.41.71.3-1.2-1.20.9
Bone volume0.51.01.11.0-0.9-1.01.0
Breakpoint value in progressive ratio session0.50.62.20.2-0.20.1-1.5
Number of licking bursts2.54.16.22.3-2.1-2.50.8
Context. condit. distance diff. score0.10.10.2-0.40.50.4-0.0
Locomotion velocity, session 11.61.83.11.5-1.8-0.8-1.0
Locomotion distance, session 10.60.71.31.0-1.2-0.5-0.5
Locomotion velocity, session 21.82.12.51.5-1.4-1.31.6
Locomotion distance, session 22.33.34.62.0-2.1-1.9-0.9
Locomotion velocity, session 30.30.30.50.5-0.7-0.2-0.6
Locomotion distance, session 32.42.63.71.9-1.9-1.50.9
Stereotopy head waving bouts, day 30.81.03.70.2-0.3-0.3-1.9
Stereotopy head waving duration, day 30.60.72.8-0.30.20.0-1.7
Locomotion velocity, session 70.10.10.2-0.30.30.40.1
Locomotion distance, session 70.20.30.50.7-0.7-0.40.3
Stereotopy head waving bouts, day 71.41.52.01.4-1.4-1.40.3
Stereotopy head waving duration, day 70.70.91.31.0-1.0-1.1-0.5
Locomotion velocity, session 80.70.93.00.4-0.5-0.3-1.7
Locomotion distance, session 80.50.81.30.8-0.9-0.7-1.1
Degree of sensitization distance1.21.21.4-1.21.21.1-1.0
Degree of sensitization stereotypy1.31.41.61.2-1.2-1.21.1
Conditioned locomotion0.10.10.20.0-0.30.40.4
Cocaine response after cond. corrected0.91.01.5-0.90.81.2-1.1
Cocaine response after cond. not corrected1.01.23.4-0.60.50.8-1.9
Cocaine response before conditioning0.81.01.70.9-0.9-1.3-0.8
Saline control response1.21.62.11.5-1.4-1.3-0.7
Bone: connectivity density0.61.02.80.7-0.6-0.71.7
Bone: cortical apparent density0.10.20.3-0.50.60.20.4
Bone: cortical area1.42.23.01.5-1.4-1.71.2
Bone: cortical porosity0.20.20.2-0.50.50.5-0.1
Bone: cortical porosity0.00.00.00.1-0.1-0.00.2
Bone: cortical thickness0.40.72.10.4-0.3-0.71.4
Bone: cortical thickness0.40.40.7-0.80.80.5-0.3
Bone: cortical tissue density0.10.20.4-0.50.60.20.3
Condit. Reinf. active minus inactive responses0.30.40.50.7-0.6-0.70.2
Condit. Reinf. active-inactive response ratio0.60.60.9-0.90.90.8-0.4
Condit. Reinf. active responses2.12.63.71.8-1.7-1.90.6
Condit. Reinf. inactive responses2.53.04.81.9-1.8-2.20.4
Incentive salience index mean3.74.56.12.5-2.4-2.40.8
Condit. Reinf. lever presses9.213.017.74.2-4.2-3.91.1
Condit. Reinf. active minus inactive responses0.50.61.10.7-0.7-0.61.0
Condit. Reinf. active-inactive response ratio0.40.41.70.10.00.01.3
Condit. Reinf. active responses1.62.22.71.6-1.6-1.61.0
Condit. Reinf. inactive responses1.72.23.31.6-1.7-1.80.5
Condit. Reinf. lever presses1.52.02.61.4-1.4-1.61.3
Condit. Reinf. lever reinforcers received1.92.63.21.8-1.8-1.71.0
Conditioned reinforcement - actives0.71.24.70.2-0.10.42.2
Conditioned reinforcement - inactives0.20.40.7-0.50.50.80.5
Conditioned locomotion1.01.34.80.2-0.30.62.2
Patch foraging indifference point 0 sec0.50.91.91.0-1.4-0.50.7
Patch foraging indifference point AUC7.310.514.13.8-3.6-3.32.1
Delay disc. indifference point, 0s delay0.80.81.5-0.80.70.8-1.2
Delay disc. indifference point, 16s delay0.80.92.3-0.90.51.5-0.4
Delay disc. indifference point, 2s delay0.00.00.0-0.20.00.20.2
Delay disc. indifference point, 24s delay0.20.20.3-0.40.30.5-0.4
Delay disc. indifference point, 4s delay0.30.30.9-0.50.21.00.3
Delay disc. indifference point, 8s delay0.00.10.1-0.0-0.20.40.3
Indifference point function ln k2.13.74.9-2.22.01.8-1.6
Indifference point function log k2.13.74.9-2.22.01.8-1.6
Patch foraging total patch changes 0 sec0.81.62.81.4-1.7-0.91.0
Patch foraging total patch changes 12 sec2.53.34.11.8-1.7-1.72.0
Patch foraging total patch changes 18 sec0.81.21.61.3-1.2-1.10.8
Patch foraging total patch changes 24 sec2.44.14.62.2-2.1-1.82.0
Patch foraging total patch changes 6 sec3.04.66.32.4-2.5-1.81.7
Patch foraging time to switch 0 sec2.24.46.0-2.42.42.1-1.1
Patch foraging water rate 0 sec1.43.04.01.9-2.0-1.51.5
Patch foraging water rate 12 sec0.00.00.10.1-0.3-0.1-0.3
Patch foraging water rate 18 sec0.40.62.10.3-0.3-0.31.5
Patch foraging water rate 24 sec0.81.13.1-0.50.60.71.8
Patch foraging water rate 6 sec0.60.81.31.0-1.0-1.1-0.4
Seeking ratio, delayed vs. immediate footshock2.93.64.21.9-1.9-1.82.1
Distance traveled before self-admin3.04.05.92.2-2.4-2.3-0.2
Distance traveled after self-admin0.40.50.70.7-0.8-0.80.2
Extensor digitorum longus weight4.116.020.84.5-4.6-4.32.2
Bone: elastic displacement5.36.18.7-2.93.02.70.0
Bone: elastic work3.44.46.5-2.42.62.01.1
Bone: endosteal estimation1.43.24.62.1-2.0-2.0-0.2
Bone: endosteal perimeter1.32.84.12.0-2.0-1.70.1
Epididymis fat weight0.30.91.31.1-1.0-1.1-0.2
Delta time in closed arm before/after self-admin0.30.20.70.4-0.2-0.80.4
Delta time in open arm before/after self-admin0.20.20.5-0.40.20.70.2
Diff in mean of infusions in LGA sessions0.20.20.4-0.20.60.1-0.6
Delay discount exponential model param0.60.61.70.8-0.4-1.30.1
Extinction: sum of active levers before priming3.23.55.3-2.01.72.3-1.4
Active lever presses in extinction session 60.30.30.5-0.40.50.70.7
Bone: final force1.32.13.51.6-1.5-1.9-0.3
Bone: final moment1.01.62.81.4-1.3-1.7-0.3
Food consumed during 24 hour testing period0.71.01.41.1-1.2-1.1-0.4
Glucose2.43.74.92.2-2.2-2.20.7
Heart weight0.50.81.21.0-1.1-1.0-0.3
Delay discount hyperbolic model param0.40.51.40.6-0.2-1.20.0
Intermittent access intake day 1-15 change0.30.71.10.9-0.7-1.10.5
Intermittent access intake escalation0.20.50.80.7-0.5-0.90.5
Intermittent access intake escalation 20.70.81.60.7-0.4-0.81.3
Intermitt. access day 1 inactive lever presses0.41.42.01.3-1.4-1.3-0.5
Intermitt. access day 15 inactive lever presses0.10.10.10.3-0.4-0.3-0.3
Intermitt. access escalation Index1.31.93.60.9-1.0-1.4-1.9
Intermittent access day 1 total infusions0.81.32.2-0.90.91.51.2
Intermittent access day 15 total infusions0.50.83.10.20.00.01.8
Intermittent access terminal intake (last 3 days)0.60.82.80.5-0.1-0.21.7
Intermittent access total infusions0.91.14.20.4-0.20.12.0
Intermittent access day 1 locomotion1.72.13.6-1.00.81.91.8
Intermittent access day 15 total locomotion0.81.42.6-0.80.91.31.6
Intermittent access total locomotion2.32.84.3-1.31.31.92.1
Intermittent access standard deviation0.20.40.90.5-0.6-0.41.0
Left kidney weight0.73.14.52.0-2.1-1.7-0.9
Right kidney weight0.31.42.21.5-1.5-1.00.3
Cocaine induced anxiety0.30.41.2-0.50.40.3-1.1
Post-drug Anxiety1.41.43.00.8-0.9-1.1-1.7
Baseline Anxiety0.40.50.90.8-0.9-0.7-0.2
Tail length1.66.38.93.0-2.8-2.80.2
Length with tail1.66.910.23.2-3.2-2.70.2
Length without tail0.10.40.80.7-0.9-0.40.0
Times rat made contact with spout0.30.30.70.4-0.3-0.50.8
Lifetime Intake0.91.03.80.5-0.30.11.9
Liver weight, left0.20.31.30.1-0.1-0.2-1.1
Liver weight, right0.81.42.0-1.41.31.40.1
Locomotor activity0.00.10.30.1-0.10.0-0.5
Locomotor testing distance0.30.52.0-0.1-0.00.2-1.4
Locomotor testing rearing0.61.31.41.2-1.2-1.2-1.0
Locomotion in novel chamber0.81.11.7-1.00.91.30.9
Locomotion in novel chamber post-restriction0.71.11.71.1-0.6-1.31.2
Fecal boli incidents, locomotor time 10.81.21.8-1.21.11.30.5
Change in fecal boli incidents, locomotor task1.00.91.61.2-1.0-1.0-0.2
Time >=10cm from walls, locomotor time 10.40.41.10.3-0.6-0.5-1.1
Bouts of movement, locomotor time 11.82.02.6-1.61.51.6-0.8
Total resting periods, locomotor time 12.32.63.4-1.81.81.7-0.7
Rest time, locomotor task time 11.62.03.8-1.52.01.30.3
Distance moved, locomotor task time 11.82.64.31.9-2.1-1.7-0.1
Vertical activity count, locomotor time 11.22.93.51.7-1.9-1.8-1.4
Time >=10cm from walls, locomotor time 20.10.20.30.5-0.5-0.6-0.3
Bouts of movement, locomotor time 20.10.20.70.4-0.8-0.10.3
Total resting periods, locomotor time 20.10.10.20.0-0.40.20.4
Rest time, locomotor task time 20.70.81.5-1.01.20.9-0.1
Distance moved, locomotor task time 20.30.30.60.6-0.6-0.80.0
Vertical activity count, locomotor time 21.11.52.31.2-1.1-1.5-1.0
Light reinforcement 11.74.36.91.8-2.2-1.5-2.6
Light reinforcement 21.92.95.01.6-1.6-1.2-2.2
Bone: marrow area1.53.24.62.1-2.0-2.1-0.0
Bone: maximum diameter1.93.54.82.1-1.9-2.21.0
Bone: maximum force2.34.15.92.3-2.2-2.40.4
Bone: maximum moment1.83.14.72.0-1.9-2.20.4
Mean time between licks in bursts0.51.34.2-0.70.70.3-2.1
Mean num. licks in bursts1.42.23.1-1.71.61.8-0.3
Cd content in liver1.21.31.91.3-1.1-1.4-0.6
Co content in liver0.60.72.5-0.40.30.2-1.6
Cu content in liver1.92.22.8-1.51.51.2-1.7
Fe content in liver0.81.02.1-0.70.51.0-1.4
K content in liver0.10.10.4-0.20.10.2-0.6
Mg content in liver0.30.30.5-0.70.70.6-0.0
Mn content in liver0.70.81.00.9-0.8-1.00.8
Na content in liver2.62.87.2-1.31.30.8-2.7
Rb content in liver4.24.96.3-2.52.42.4-1.4
Se content in liver1.51.72.61.6-1.4-1.50.3
Sr content in liver0.60.50.70.8-0.8-0.8-0.2
Zn content in liver0.00.00.00.2-0.1-0.1-0.2
Bone: minimum diameter0.10.10.4-0.20.30.20.6
Time in familiar zone, hab. session 11.61.62.2-1.21.40.91.5
Time in novel zone, hab. session 11.91.96.9-0.50.30.7-2.6
Total zone transitions, hab. session 10.00.00.10.1-0.1-0.1-0.3
Total locomotion distance, hab. session 10.10.20.40.3-0.2-0.70.3
Locomotion velocity, hab. session 10.91.32.31.3-1.1-1.50.5
Time in familiar zone, hab. session 21.11.11.9-1.31.41.00.3
Time in novel zone, hab. session 20.60.61.4-0.60.40.8-1.2
Total zone transitions, hab. session 20.70.91.41.1-1.2-0.9-0.3
Total locomotion distance, hab. session 20.70.91.31.1-1.0-1.10.2
Locomotion velocity, hab. session 20.91.21.71.3-1.2-1.30.4
Novel to familiar place preference ratio2.02.22.8-1.61.31.7-1.3
Novelty place preference3.03.24.2-2.01.72.0-1.3
Time in novel zone, NPP test3.84.05.1-2.21.92.2-1.6
Total zone transitions, NPP test0.91.32.01.3-1.4-1.1-0.6
Total locomotion distance, NPP test2.02.74.02.0-2.0-1.70.2
Locomotion velocity, NPP test2.43.44.92.2-2.2-1.90.7
Intraocular pressure2.63.75.02.2-2.2-2.10.9
Delta distance traveled before/after self-admin0.20.20.3-0.50.50.4-0.6
Delta ambulatory time before/after self-admin0.70.91.3-1.01.10.8-0.8
Parametrial fat weight0.20.41.7-0.1-0.20.1-1.3
Pavlov. Cond. lever latency5.87.310.1-3.23.12.9-1.0
Pavlov. Cond. magazine entry latency0.40.50.70.8-0.8-0.80.2
Pavlov. Cond. change in total contacts2.52.63.61.9-1.9-1.70.8
Pavlov. Cond. index score2.63.24.52.1-2.0-2.00.6
Pavlov. Cond. latency score2.43.04.22.1-2.0-1.90.7
Pavlov. Cond. lever contacts5.46.48.62.9-2.9-2.71.3
Pavlov. Cond. magazine entry number0.50.60.7-0.90.80.9-0.5
Pavlov. Cond. intertrial magazine entries0.20.20.30.5-0.5-0.60.1
Pavlov. Cond. lever-magazine prob. diff.2.43.04.12.0-1.9-1.90.8
Pavlov. Cond. response bias3.24.05.42.3-2.3-2.20.7
Pavlov. Cond. lever latency1.42.02.9-1.51.41.7-1.0
Pavlov. Cond. magazine entry latency0.40.50.6-0.70.80.6-0.6
Pavlov. Cond. change in total contacts0.20.20.60.3-0.2-0.80.4
Pavlov. Cond. index score0.00.00.20.10.0-0.40.1
Pavlov. Cond. latency score0.10.10.30.1-0.0-0.40.5
Pavlov. Cond. lever contacts1.01.42.21.2-1.2-1.50.7
Pavlov. Cond. magazine entry number0.10.10.10.3-0.40.1-0.2
Pavlov. Cond. intertrial magazine entries0.30.50.60.8-0.7-0.70.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.00.1-0.40.2
Pavlov. Cond. response bias0.30.40.80.5-0.5-0.90.3
Time in closed arm before self-admin0.91.12.0-1.00.71.40.9
Time in closed arm after self-admin0.30.30.8-0.60.90.20.1
Time in open arm before self-admin1.92.12.91.7-1.4-1.7-0.7
Time in open arm after self-admin1.01.11.91.2-1.4-0.80.6
Bone: periosteal estimation1.53.34.72.1-1.9-2.20.4
Bone: periosteal perimeter0.61.01.51.2-1.2-1.00.1
Bone: post-yield work2.53.65.12.3-2.2-2.1-0.3
Progressive ratio test 1 active lever presses0.60.72.4-0.10.20.71.6
Progressive ratio test 1 breakpoint0.60.72.40.00.20.61.5
Progressive ratio test 1 inactive lever presses0.91.22.11.4-1.5-0.90.2
Progressive ratio test 2 active lever presses0.60.71.8-0.20.40.91.3
Progressive ratio test 2 breakpoint0.70.81.9-0.20.41.01.4
Progressive ratio test 2 inactive lever presses0.61.03.50.7-0.3-0.21.9
Incentive Sensitization - Responses0.10.10.3-0.30.30.6-0.0
Incentive Sensitization - Breakpoint0.10.20.4-0.40.30.60.0
Sum of active levers in priming session hrs 5-61.91.82.9-1.41.21.7-1.0
Progressive ratio0.00.10.2-0.0-0.10.40.3
Food seeking constrained by brief footshock6.27.612.53.0-3.5-2.71.3
Seeking ratio, punishment vs. effort1.62.33.51.7-1.7-1.90.4
Retroperitoneal fat weight0.41.82.3-1.51.51.0-1.3
Reaction time number correct0.10.20.30.5-0.6-0.20.5
Reaction time mean minus median0.10.20.3-0.20.3-0.50.5
Reaction time mean minus median AUC0.20.40.80.5-0.3-0.90.7
Reaction time num false alarms0.10.10.4-0.00.10.10.7
Reaction time num false alarms AUC0.30.40.60.6-0.7-0.40.8
Reaction time trials correct on left0.10.20.30.5-0.6-0.20.5
Reaction time trials on left0.10.10.20.4-0.5-0.10.5
Reaction time mean1.42.33.9-1.82.01.2-0.8
Reaction time mean AUC1.62.64.5-1.92.11.4-0.6
Median of all reaction times2.83.95.7-2.32.41.8-1.3
Reaction time omissions1.62.32.6-1.61.61.3-1.5
Reaction time false alarm rate0.10.10.1-0.20.30.20.3
Reaction time premature initiation rate2.33.24.9-2.22.21.8-0.3
Reaction time premature initiations1.22.13.2-1.81.71.50.1
Std. dev. reaction times0.30.51.1-0.91.00.2-0.4
Reaction time trials completed0.10.10.20.4-0.5-0.10.5
Reaction time trials AUC0.10.10.20.4-0.5-0.10.4
Run reversals in cocaine runway, females0.10.10.10.10.2-0.2-0.3
Run reversals in cocaine runway, males0.20.20.4-0.30.30.40.6
Latency to leave start box in cocaine runway0.30.40.50.6-0.7-0.50.7
Latency to leave start box in cocaine runway, F0.10.10.3-0.20.10.50.4
Latency to leave start box in cocaine runway, M1.61.52.21.3-1.5-1.40.1
Std. dev. time between licks in bursts0.30.40.5-0.70.70.7-0.4
Total sessions with >9 infusions0.40.51.60.4-0.40.41.3
Short access day 1 total inactive lever presses0.60.81.41.1-1.2-0.60.5
Short access day 10 total inactive lever presses0.30.61.20.7-0.8-1.1-0.4
Short access day 1 total infusions0.30.40.60.7-0.60.00.8
Short access day 10 total infusions0.10.10.30.3-0.30.10.5
Short access total infusions0.20.30.80.2-0.20.50.9
Short access day 1 locomotion1.31.63.9-1.00.82.00.9
Short access day 10 total locomotion1.42.63.9-1.51.32.01.6
Short access total locomotion0.60.81.7-0.60.31.31.0
One hour access (0.3 mA shock)1.01.12.91.0-0.7-0.51.7
Compulsive drug intake0.10.20.30.3-0.2-0.50.5
One hour access (shock baseline)0.50.82.00.8-0.6-0.21.4
Social response proportion3.13.56.3-1.71.91.1-2.5
Social responses0.70.91.11.0-0.9-1.0-0.8
Social time1.31.87.0-0.10.2-0.2-2.6
Soleus weight0.72.16.30.9-1.1-0.6-2.5
Bone: stiffness3.35.48.12.7-2.5-2.8-0.3
Tibialis anterior weight7.023.832.15.6-5.7-5.51.0
Time to tail flick, vehicle, before self-admin1.01.01.5-0.70.91.11.2
Time to tail flick, vehicle, after self-admin0.20.20.80.10.0-0.20.9
Time to tail flick, test, before self-admin0.30.40.40.6-0.6-0.60.6
Time to tail flick, test, after self-admin2.32.46.21.1-0.9-1.22.5
Delta time to tail flick, vehicle, before/after SA0.60.61.00.5-0.4-0.9-1.0
Delta time to tail flick, test, before/after SA0.50.51.6-0.30.40.31.3
Tibia length0.51.44.30.6-0.7-0.5-2.1
Ambulatory time before self-admin2.23.34.72.1-2.2-2.00.3
Ambulatory time after self-admin0.30.40.50.7-0.7-0.60.1
Bone: tissue strength0.50.51.60.2-0.3-0.6-1.3
Total heroin consumption0.60.71.1-0.80.51.0-0.8
Bone: trabecular number0.71.21.41.1-0.9-1.21.2
Bone: trabecular spacing0.00.00.1-0.20.30.0-0.0
Bone: trabecular thickness0.30.30.5-0.50.50.60.7
Bone: trabecular tissue density2.84.15.52.3-2.3-2.4-0.9
Water consumed over 24 hours0.60.81.00.8-0.8-0.91.0
Number of responses in last shaping day0.50.51.50.3-0.70.1-1.2