Cers5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg intron excision ratio chr7_130870888_130876061 0.12 0.1 5.0e-03 0.02 0.09 0.01 0.07 7.4e-02 2.3e-03 1.2e-01 6.8e-03
2 Eye intron excision ratio chr7_130872079_130876061 0.17 0.14 9.2e-03 0.25 0.15 0.18 0.23 8.4e-05 2.7e-03 1.0e-03 1.6e-04
3 PL intron excision ratio chr7_130861374_130862136 0.02 0.02 5.3e-03 0.01 0.01 0.01 0.01 2.2e-02 3.1e-02 2.1e-02 3.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density7.412.412.8-3.63.5-3.4
Area under the delay curve1.41.51.7-1.11.2-1.3
BMI with tail4.313.814.2-3.83.7-3.7
BMI without tail0.20.40.6-0.60.6-0.8
Body weight5.422.525.9-4.65.1-4.5
Weight adjusted by age0.50.51.0-0.61.0-0.4
Bone surface9.717.018.0-4.24.1-4.1
Bone volume8.915.215.7-4.03.9-3.9
Breakpoint value in progressive ratio session0.20.20.5-0.20.7-0.4
Number of licking bursts1.51.82.71.2-1.61.2
Context. condit. distance diff. score0.20.20.3-0.50.5-0.5
Locomotion velocity, session 13.74.04.32.1-1.92.1
Locomotion distance, session 12.83.63.71.9-1.91.9
Locomotion velocity, session 20.30.30.40.6-0.60.6
Locomotion distance, session 23.04.24.32.1-2.12.0
Locomotion velocity, session 34.75.55.82.4-2.42.3
Locomotion distance, session 32.93.23.51.9-1.71.8
Stereotopy head waving bouts, day 30.00.00.0-0.10.2-0.1
Stereotopy head waving duration, day 30.00.00.00.1-0.10.1
Locomotion velocity, session 72.42.73.21.8-1.31.8
Locomotion distance, session 73.74.75.32.3-1.92.3
Stereotopy head waving bouts, day 70.50.60.6-0.80.8-0.8
Stereotopy head waving duration, day 71.11.31.3-1.11.1-1.1
Locomotion velocity, session 80.50.60.70.7-0.70.8
Locomotion distance, session 81.21.71.81.3-1.31.3
Degree of sensitization distance0.00.00.0-0.10.1-0.1
Degree of sensitization stereotypy0.60.70.7-0.80.8-0.8
Conditioned locomotion0.10.10.20.1-0.40.2
Cocaine response after cond. corrected0.00.00.1-0.00.40.0
Cocaine response after cond. not corrected0.20.20.20.5-0.30.4
Cocaine response before conditioning2.32.83.61.6-1.91.4
Saline control response0.10.10.20.0-0.50.2
Bone: connectivity density3.86.06.5-2.52.4-2.4
Bone: cortical apparent density0.10.20.30.6-0.20.5
Bone: cortical area5.98.99.3-3.13.0-2.9
Bone: cortical porosity0.00.00.0-0.2-0.0-0.2
Bone: cortical porosity0.00.00.10.1-0.30.1
Bone: cortical thickness1.52.52.6-1.61.6-1.6
Bone: cortical thickness0.30.30.40.5-0.60.6
Bone: cortical tissue density0.20.30.40.7-0.30.6
Condit. Reinf. active minus inactive responses0.10.10.10.3-0.20.3
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.3-0.4
Condit. Reinf. active responses0.70.90.91.0-0.90.9
Condit. Reinf. inactive responses2.83.33.51.9-1.71.8
Incentive salience index mean0.00.00.0-0.10.1-0.1
Condit. Reinf. lever presses0.50.70.8-0.80.9-0.8
Condit. Reinf. active minus inactive responses0.60.81.1-1.00.4-1.1
Condit. Reinf. active-inactive response ratio0.50.50.8-0.80.3-0.9
Condit. Reinf. active responses0.10.10.1-0.3-0.0-0.4
Condit. Reinf. inactive responses0.60.81.01.0-0.70.9
Condit. Reinf. lever presses0.00.00.1-0.0-0.30.0
Condit. Reinf. lever reinforcers received0.10.10.30.1-0.60.1
Conditioned reinforcement - actives1.01.01.21.1-0.91.0
Conditioned reinforcement - inactives2.02.22.31.5-1.51.5
Conditioned locomotion0.20.20.30.4-0.50.4
Patch foraging indifference point 0 sec6.09.610.33.1-3.03.2
Patch foraging indifference point AUC0.40.40.70.5-0.90.6
Delay disc. indifference point, 0s delay1.92.12.2-1.51.4-1.4
Delay disc. indifference point, 16s delay1.21.21.4-1.01.2-1.1
Delay disc. indifference point, 2s delay1.92.12.4-1.51.5-1.3
Delay disc. indifference point, 24s delay0.70.70.8-0.80.9-0.8
Delay disc. indifference point, 4s delay1.31.31.6-1.11.1-1.2
Delay disc. indifference point, 8s delay1.92.02.3-1.31.4-1.5
Indifference point function ln k5.27.27.8-2.72.8-2.6
Indifference point function log k5.27.27.8-2.72.8-2.6
Patch foraging total patch changes 0 sec5.69.09.53.0-2.93.1
Patch foraging total patch changes 12 sec5.87.58.12.8-2.62.8
Patch foraging total patch changes 18 sec7.810.010.73.1-3.33.1
Patch foraging total patch changes 24 sec4.85.96.32.3-2.52.4
Patch foraging total patch changes 6 sec6.910.210.83.2-3.13.3
Patch foraging time to switch 0 sec2.13.33.92.0-1.71.8
Patch foraging water rate 0 sec3.14.95.3-2.32.1-2.2
Patch foraging water rate 12 sec2.53.84.4-2.11.6-2.0
Patch foraging water rate 18 sec0.50.70.8-0.80.9-0.8
Patch foraging water rate 24 sec4.66.47.2-2.62.4-2.7
Patch foraging water rate 6 sec5.58.18.3-2.92.8-2.9
Seeking ratio, delayed vs. immediate footshock0.40.50.8-0.90.3-0.8
Distance traveled before self-admin2.12.32.81.6-1.11.7
Distance traveled after self-admin0.50.50.70.8-0.40.8
Extensor digitorum longus weight4.818.919.7-4.34.4-4.3
Bone: elastic displacement6.67.57.82.8-2.72.8
Bone: elastic work0.00.00.10.00.30.0
Bone: endosteal estimation7.115.616.8-4.13.8-3.9
Bone: endosteal perimeter6.413.414.6-3.83.4-3.7
Epididymis fat weight0.00.00.0-0.10.2-0.1
Delta time in closed arm before/after self-admin0.10.10.1-0.30.3-0.2
Delta time in open arm before/after self-admin4.34.15.21.9-2.31.9
Diff in mean of infusions in LGA sessions2.02.22.7-1.31.6-1.5
Delay discount exponential model param1.41.41.61.1-1.21.3
Extinction: sum of active levers before priming0.80.81.0-0.91.0-0.8
Active lever presses in extinction session 60.20.10.3-0.30.6-0.3
Bone: final force10.717.317.9-4.24.1-4.1
Bone: final moment12.119.720.4-4.54.4-4.4
Food consumed during 24 hour testing period1.51.82.1-1.41.3-1.3
Glucose0.40.71.10.6-1.00.7
Heart weight0.10.20.2-0.30.4-0.4
Delay discount hyperbolic model param1.41.51.71.1-1.21.3
Intermittent access intake day 1-15 change0.20.20.20.5-0.50.2
Intermittent access intake escalation0.00.00.00.2-0.1-0.1
Intermittent access intake escalation 20.10.10.20.4-0.40.2
Intermitt. access day 1 inactive lever presses0.40.40.40.6-0.60.6
Intermitt. access day 15 inactive lever presses0.10.10.10.3-0.20.2
Intermitt. access escalation Index0.80.70.80.8-0.90.8
Intermittent access day 1 total infusions1.21.41.51.2-1.11.2
Intermittent access day 15 total infusions1.61.82.11.4-1.31.2
Intermittent access terminal intake (last 3 days)1.61.82.01.4-1.31.2
Intermittent access total infusions1.61.82.01.4-1.31.3
Intermittent access day 1 locomotion1.31.41.51.2-1.11.2
Intermittent access day 15 total locomotion1.11.21.41.1-1.21.0
Intermittent access total locomotion3.94.44.52.1-2.12.0
Intermittent access standard deviation0.00.00.00.00.1-0.1
Left kidney weight1.33.65.1-1.62.3-1.7
Right kidney weight2.67.49.4-2.53.1-2.6
Cocaine induced anxiety1.21.31.6-1.01.3-1.2
Post-drug Anxiety5.56.16.3-2.42.5-2.5
Baseline Anxiety0.60.70.9-0.90.9-0.6
Tail length0.00.00.00.20.10.0
Length with tail1.97.08.8-2.53.0-2.5
Length without tail5.111.212.8-3.33.6-3.1
Times rat made contact with spout0.00.00.00.1-0.10.2
Lifetime Intake2.32.62.91.7-1.51.6
Liver weight, left1.42.22.7-1.61.3-1.4
Liver weight, right1.52.52.8-1.61.7-1.5
Locomotor activity0.81.21.91.4-0.51.2
Locomotor testing distance2.64.35.42.3-1.72.1
Locomotor testing rearing1.93.03.51.9-1.51.8
Locomotion in novel chamber2.32.83.4-1.81.4-1.8
Locomotion in novel chamber post-restriction0.30.30.5-0.70.7-0.3
Fecal boli incidents, locomotor time 11.01.11.61.2-1.30.7
Change in fecal boli incidents, locomotor task0.40.40.5-0.60.7-0.5
Time >=10cm from walls, locomotor time 10.20.20.30.5-0.50.5
Bouts of movement, locomotor time 10.00.00.0-0.10.1-0.2
Total resting periods, locomotor time 10.30.40.40.6-0.60.6
Rest time, locomotor task time 10.60.70.80.9-0.90.7
Distance moved, locomotor task time 10.00.00.00.0-0.00.1
Vertical activity count, locomotor time 11.11.21.3-1.01.1-1.2
Time >=10cm from walls, locomotor time 20.20.20.40.6-0.50.3
Bouts of movement, locomotor time 22.93.23.6-1.91.8-1.6
Total resting periods, locomotor time 23.33.64.1-2.01.9-1.7
Rest time, locomotor task time 20.20.20.30.3-0.40.5
Distance moved, locomotor task time 20.00.00.10.3-0.00.1
Vertical activity count, locomotor time 20.20.20.3-0.30.4-0.5
Light reinforcement 10.91.62.01.3-1.41.1
Light reinforcement 20.00.10.1-0.00.3-0.3
Bone: marrow area6.714.515.7-4.03.7-3.8
Bone: maximum diameter1.62.93.1-1.81.7-1.7
Bone: maximum force14.424.825.4-5.05.0-4.9
Bone: maximum moment16.127.728.4-5.35.3-5.2
Mean time between licks in bursts0.00.00.00.10.20.1
Mean num. licks in bursts0.70.81.5-0.71.2-0.7
Cd content in liver0.60.60.80.7-0.90.7
Co content in liver0.40.50.70.8-0.50.7
Cu content in liver0.10.10.3-0.50.3-0.3
Fe content in liver0.81.01.21.1-0.81.1
K content in liver0.10.10.20.3-0.10.4
Mg content in liver0.30.30.30.5-0.50.5
Mn content in liver0.10.10.2-0.40.4-0.2
Na content in liver0.30.30.40.5-0.50.6
Rb content in liver2.32.93.01.6-1.71.7
Se content in liver2.42.93.21.6-1.81.7
Sr content in liver0.00.00.0-0.1-0.1-0.2
Zn content in liver2.73.03.21.8-1.71.7
Bone: minimum diameter8.115.216.3-4.03.8-3.8
Time in familiar zone, hab. session 10.00.00.0-0.00.0-0.0
Time in novel zone, hab. session 10.00.00.0-0.10.1-0.1
Total zone transitions, hab. session 10.10.10.10.3-0.40.3
Total locomotion distance, hab. session 10.30.40.40.6-0.60.7
Locomotion velocity, hab. session 10.20.20.20.4-0.50.5
Time in familiar zone, hab. session 21.41.51.6-1.31.2-1.2
Time in novel zone, hab. session 21.61.61.71.3-1.31.3
Total zone transitions, hab. session 20.20.30.40.5-0.60.6
Total locomotion distance, hab. session 20.40.60.70.7-0.80.8
Locomotion velocity, hab. session 20.20.30.40.5-0.60.6
Novel to familiar place preference ratio1.31.31.6-1.21.1-1.2
Novelty place preference0.70.70.9-1.00.7-0.9
Time in novel zone, NPP test0.50.50.6-0.80.5-0.7
Total zone transitions, NPP test2.53.63.81.9-1.81.9
Total locomotion distance, NPP test3.54.84.82.2-2.22.2
Locomotion velocity, NPP test2.33.23.31.8-1.81.8
Intraocular pressure5.17.17.42.7-2.72.5
Delta distance traveled before/after self-admin0.20.20.3-0.50.2-0.5
Delta ambulatory time before/after self-admin0.10.10.2-0.30.1-0.4
Parametrial fat weight1.42.63.01.6-1.71.5
Pavlov. Cond. lever latency0.10.20.20.3-0.40.4
Pavlov. Cond. magazine entry latency0.91.21.3-1.11.1-1.1
Pavlov. Cond. change in total contacts1.21.31.4-1.11.2-1.1
Pavlov. Cond. index score0.70.80.9-0.90.9-0.9
Pavlov. Cond. latency score0.50.60.7-0.70.8-0.8
Pavlov. Cond. lever contacts0.00.10.1-0.10.3-0.2
Pavlov. Cond. magazine entry number0.30.40.40.6-0.70.7
Pavlov. Cond. intertrial magazine entries4.65.56.42.3-2.22.5
Pavlov. Cond. lever-magazine prob. diff.1.01.21.3-1.11.2-1.1
Pavlov. Cond. response bias0.30.30.4-0.50.6-0.6
Pavlov. Cond. lever latency1.21.62.4-1.01.5-1.1
Pavlov. Cond. magazine entry latency0.10.20.40.2-0.60.3
Pavlov. Cond. change in total contacts0.30.40.7-0.80.3-0.6
Pavlov. Cond. index score0.60.81.50.6-1.20.8
Pavlov. Cond. latency score0.60.81.40.6-1.20.7
Pavlov. Cond. lever contacts1.11.52.41.0-1.61.1
Pavlov. Cond. magazine entry number0.10.10.20.10.4-0.1
Pavlov. Cond. intertrial magazine entries1.92.53.01.7-1.41.6
Pavlov. Cond. lever-magazine prob. diff.0.30.40.90.3-0.90.5
Pavlov. Cond. response bias0.60.91.60.7-1.30.7
Time in closed arm before self-admin1.01.21.3-1.11.1-1.0
Time in closed arm after self-admin0.50.60.6-0.70.8-0.8
Time in open arm before self-admin0.40.40.9-0.31.0-0.4
Time in open arm after self-admin0.20.20.30.5-0.40.6
Bone: periosteal estimation9.319.220.3-4.54.3-4.3
Bone: periosteal perimeter8.914.816.0-4.03.7-3.8
Bone: post-yield work8.511.612.0-3.53.3-3.4
Progressive ratio test 1 active lever presses8.28.58.93.0-2.92.9
Progressive ratio test 1 breakpoint7.07.37.62.8-2.72.7
Progressive ratio test 1 inactive lever presses2.22.42.61.6-1.51.6
Progressive ratio test 2 active lever presses2.12.22.31.5-1.51.5
Progressive ratio test 2 breakpoint2.42.72.81.6-1.71.7
Progressive ratio test 2 inactive lever presses1.21.31.41.2-1.21.1
Incentive Sensitization - Responses0.20.20.3-0.50.4-0.4
Incentive Sensitization - Breakpoint0.10.10.2-0.40.3-0.4
Sum of active levers in priming session hrs 5-60.50.50.50.6-0.70.7
Progressive ratio1.01.11.31.0-1.01.2
Food seeking constrained by brief footshock1.51.92.31.5-1.11.5
Seeking ratio, punishment vs. effort0.10.10.2-0.30.5-0.3
Retroperitoneal fat weight1.13.54.11.9-1.72.0
Reaction time number correct1.11.61.8-1.31.2-1.3
Reaction time mean minus median6.18.19.42.8-3.12.6
Reaction time mean minus median AUC4.45.76.72.4-2.62.2
Reaction time num false alarms1.41.81.91.4-1.41.3
Reaction time num false alarms AUC1.62.22.31.5-1.51.4
Reaction time trials correct on left1.11.61.8-1.31.2-1.3
Reaction time trials on left0.91.31.4-1.21.1-1.1
Reaction time mean0.60.81.01.0-1.00.8
Reaction time mean AUC0.30.40.60.7-0.60.5
Median of all reaction times0.00.00.00.1-0.0-0.1
Reaction time omissions7.510.211.23.3-3.13.2
Reaction time false alarm rate1.82.52.61.6-1.61.5
Reaction time premature initiation rate4.15.46.42.5-2.02.4
Reaction time premature initiations1.62.22.71.7-1.21.6
Std. dev. reaction times5.17.18.02.7-2.82.5
Reaction time trials completed0.91.31.4-1.21.1-1.1
Reaction time trials AUC1.52.12.4-1.51.4-1.4
Run reversals in cocaine runway, females0.40.40.5-0.60.6-0.7
Run reversals in cocaine runway, males1.51.41.70.9-1.31.3
Latency to leave start box in cocaine runway0.00.00.10.00.3-0.1
Latency to leave start box in cocaine runway, F1.21.41.81.3-0.81.3
Latency to leave start box in cocaine runway, M2.12.02.4-1.51.2-1.5
Std. dev. time between licks in bursts1.21.51.61.3-1.11.2
Total sessions with >9 infusions1.31.51.71.3-1.31.1
Short access day 1 total inactive lever presses1.31.41.51.2-1.21.2
Short access day 10 total inactive lever presses0.00.00.0-0.20.1-0.2
Short access day 1 total infusions0.50.50.60.8-0.70.7
Short access day 10 total infusions2.73.03.21.7-1.71.8
Short access total infusions1.61.82.01.4-1.31.3
Short access day 1 locomotion0.20.20.30.5-0.60.4
Short access day 10 total locomotion0.20.20.20.4-0.40.4
Short access total locomotion0.50.60.60.7-0.70.8
One hour access (0.3 mA shock)0.00.10.1-0.10.2-0.3
Compulsive drug intake2.02.02.5-1.41.3-1.6
One hour access (shock baseline)0.00.00.00.10.0-0.0
Social response proportion0.10.10.20.3-0.10.5
Social responses5.67.27.72.6-2.62.8
Social time0.30.40.8-0.60.9-0.5
Soleus weight1.13.13.3-1.71.8-1.8
Bone: stiffness18.629.430.0-5.55.5-5.3
Tibialis anterior weight3.010.110.5-3.13.2-3.2
Time to tail flick, vehicle, before self-admin0.80.80.90.9-1.00.9
Time to tail flick, vehicle, after self-admin0.60.60.8-0.80.9-0.7
Time to tail flick, test, before self-admin0.10.10.10.3-0.20.3
Time to tail flick, test, after self-admin0.90.91.2-0.91.1-0.9
Delta time to tail flick, vehicle, before/after SA0.80.81.0-0.91.0-0.8
Delta time to tail flick, test, before/after SA0.60.60.8-0.90.6-0.7
Tibia length4.412.312.9-3.63.5-3.4
Ambulatory time before self-admin3.94.14.62.2-1.92.0
Ambulatory time after self-admin1.92.12.41.4-1.61.3
Bone: tissue strength2.42.32.5-1.41.6-1.5
Total heroin consumption1.41.62.0-1.21.4-1.2
Bone: trabecular number4.06.26.6-2.62.5-2.4
Bone: trabecular spacing1.51.92.71.3-1.61.2
Bone: trabecular thickness0.60.70.9-0.71.0-0.9
Bone: trabecular tissue density0.71.01.3-1.00.8-1.2
Water consumed over 24 hours0.10.10.10.3-0.30.3
Number of responses in last shaping day0.40.40.6-0.60.5-0.8