Cers5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye isoform ratio XM_006257374.5 0.54 0.28 7.7e-03 0.25 0.21 0.21 0.22 1.1e-04 4.0e-04 3.6e-04 2.9e-04
2 Eye intron excision ratio chr7_132750920_132754902 0.18 0.14 5.5e-03 0.27 0.17 0.22 0.26 4.2e-05 1.4e-03 2.6e-04 7.2e-05
3 Eye intron excision ratio chr7_132749729_132750790 0.15 0.12 9.7e-03 0.13 0.17 0.09 0.17 5.6e-03 1.5e-03 1.5e-02 1.5e-03
4 PL intron excision ratio chr7_132740215_132740977 0.02 0.02 5.8e-03 0.04 0.01 0.03 0.03 4.9e-05 1.5e-02 5.1e-04 2.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density7.312.616.44.1-3.23.53.4
Area under the delay curve0.80.91.70.8-1.31.10.0
BMI with tail4.816.622.64.7-4.64.70.0
BMI without tail1.13.25.02.1-1.92.20.0
Body weight4.821.130.25.2-5.25.50.0
Weight adjusted by age0.91.43.41.8-1.11.00.0
Bone surface9.317.020.74.6-3.94.13.9
Bone volume8.014.315.33.9-3.53.93.8
Breakpoint value in progressive ratio session0.91.12.01.4-1.20.90.0
Number of licking bursts1.01.62.6-0.81.6-1.2-1.3
Context. condit. distance diff. score0.10.20.30.5-0.20.50.3
Locomotion velocity, session 13.03.24.7-0.81.9-2.0-2.2
Locomotion distance, session 12.73.43.8-1.61.9-1.9-2.0
Locomotion velocity, session 20.20.30.4-0.40.4-0.6-0.6
Locomotion distance, session 22.53.44.3-1.71.7-2.1-2.0
Locomotion velocity, session 35.15.86.4-2.22.5-2.4-2.5
Locomotion distance, session 33.84.25.8-2.41.9-1.9-1.9
Stereotopy head waving bouts, day 30.30.31.11.0-0.30.20.0
Stereotopy head waving duration, day 30.20.20.70.8-0.2-0.0-0.2
Locomotion velocity, session 72.02.23.0-0.61.6-1.7-1.7
Locomotion distance, session 73.24.04.8-1.62.1-2.2-2.1
Stereotopy head waving bouts, day 70.80.91.21.1-0.81.00.9
Stereotopy head waving duration, day 71.01.21.31.1-1.01.11.1
Locomotion velocity, session 80.30.40.70.20.8-0.6-0.6
Locomotion distance, session 81.21.72.0-1.21.4-1.3-1.3
Degree of sensitization distance0.10.10.40.6-0.30.10.2
Degree of sensitization stereotypy0.40.40.60.2-0.60.80.8
Conditioned locomotion0.10.10.20.00.5-0.2-0.2
Cocaine response after cond. corrected0.00.00.0-0.0-0.0-0.10.1
Cocaine response after cond. not corrected0.30.40.6-0.80.6-0.6-0.5
Cocaine response before conditioning2.83.44.3-2.11.8-1.6-1.8
Saline control response0.00.10.10.20.3-0.1-0.2
Bone: connectivity density4.26.610.43.2-2.22.42.3
Bone: cortical apparent density0.10.10.2-0.40.4-0.4-0.1
Bone: cortical area7.511.516.04.0-3.23.33.0
Bone: cortical porosity0.10.10.5-0.70.10.10.1
Bone: cortical porosity0.20.20.8-0.90.3-0.10.0
Bone: cortical thickness2.33.95.92.4-1.71.91.8
Bone: cortical thickness0.10.10.20.10.0-0.4-0.4
Bone: cortical tissue density0.20.20.3-0.50.5-0.5-0.2
Condit. Reinf. active minus inactive responses0.10.10.2-0.20.5-0.3-0.2
Condit. Reinf. active-inactive response ratio0.20.20.40.7-0.20.40.4
Condit. Reinf. active responses0.70.80.9-0.81.0-1.0-0.9
Condit. Reinf. inactive responses2.83.43.8-2.01.7-1.9-1.9
Incentive salience index mean0.00.00.00.10.20.10.1
Condit. Reinf. lever presses0.30.40.50.3-0.60.70.7
Condit. Reinf. active minus inactive responses0.40.51.0-0.1-0.50.91.0
Condit. Reinf. active-inactive response ratio0.40.40.8-0.5-0.40.70.9
Condit. Reinf. active responses0.10.10.2-0.5-0.10.20.3
Condit. Reinf. inactive responses0.60.81.0-0.80.8-0.9-1.0
Condit. Reinf. lever presses0.00.00.00.10.00.0-0.1
Condit. Reinf. lever reinforcers received0.10.20.6-0.80.4-0.2-0.1
Conditioned reinforcement - actives0.50.81.9-1.40.6-0.90.0
Conditioned reinforcement - inactives3.14.66.6-2.62.3-2.50.0
Conditioned locomotion0.20.20.4-0.40.6-0.50.0
Patch foraging indifference point 0 sec4.88.812.6-2.13.5-3.1-3.0
Patch foraging indifference point AUC0.71.01.5-1.21.0-1.0-0.6
Delay disc. indifference point, 0s delay1.21.32.21.1-1.31.50.0
Delay disc. indifference point, 16s delay0.70.81.70.8-1.30.90.0
Delay disc. indifference point, 2s delay1.21.42.11.2-1.41.40.0
Delay disc. indifference point, 24s delay0.50.61.01.0-0.90.70.0
Delay disc. indifference point, 4s delay0.90.92.00.6-1.41.10.0
Delay disc. indifference point, 8s delay1.11.32.01.4-1.41.20.0
Indifference point function ln k3.66.37.02.3-2.52.62.6
Indifference point function log k3.66.37.02.3-2.52.62.6
Patch foraging total patch changes 0 sec4.38.211.6-2.03.4-3.0-2.8
Patch foraging total patch changes 12 sec5.26.88.4-2.02.7-2.9-2.7
Patch foraging total patch changes 18 sec5.48.211.7-2.63.4-3.1-2.2
Patch foraging total patch changes 24 sec2.84.86.0-1.92.4-2.4-1.9
Patch foraging total patch changes 6 sec5.99.011.4-2.13.4-3.2-3.1
Patch foraging time to switch 0 sec2.04.04.3-2.02.0-2.1-2.0
Patch foraging water rate 0 sec2.75.66.42.2-2.42.52.3
Patch foraging water rate 12 sec2.45.05.62.4-2.22.12.2
Patch foraging water rate 18 sec0.40.70.90.8-0.90.80.6
Patch foraging water rate 24 sec4.15.77.02.2-2.42.62.2
Patch foraging water rate 6 sec6.18.810.12.5-3.23.03.1
Seeking ratio, delayed vs. immediate footshock0.20.20.50.2-0.50.70.0
Distance traveled before self-admin1.41.93.9-0.92.0-1.60.0
Distance traveled after self-admin0.81.02.3-0.41.5-1.20.0
Extensor digitorum longus weight4.618.120.63.9-4.54.44.2
Bone: elastic displacement5.26.07.3-1.92.5-2.7-2.6
Bone: elastic work0.00.10.20.40.0-0.1-0.2
Bone: endosteal estimation7.316.118.34.3-4.14.13.5
Bone: endosteal perimeter6.814.515.33.8-3.93.83.7
Epididymis fat weight0.41.22.71.7-1.11.00.0
Delta time in closed arm before/after self-admin0.00.00.0-0.1-0.10.10.0
Delta time in open arm before/after self-admin1.01.01.5-1.01.2-1.10.0
Diff in mean of infusions in LGA sessions0.80.91.51.2-1.20.90.0
Delay discount exponential model param0.80.91.8-0.81.4-1.00.0
Extinction: sum of active levers before priming1.61.72.61.5-1.41.60.0
Active lever presses in extinction session 60.40.41.31.1-0.40.30.0
Bone: final force11.518.319.14.3-4.34.44.2
Bone: final moment12.820.621.54.5-4.54.64.4
Food consumed during 24 hour testing period1.21.62.11.4-0.91.51.3
Glucose0.10.20.50.30.6-0.70.0
Heart weight0.10.20.30.1-0.60.50.0
Delay discount hyperbolic model param0.80.91.8-0.81.3-1.00.0
Intermittent access intake day 1-15 change0.10.20.4-0.5-0.60.30.0
Intermittent access intake escalation0.20.40.9-0.3-1.00.70.0
Intermittent access intake escalation 20.10.10.4-0.6-0.40.20.0
Intermitt. access day 1 inactive lever presses0.10.20.6-0.80.4-0.30.0
Intermitt. access day 15 inactive lever presses0.20.41.4-1.2-0.1-0.00.0
Intermitt. access escalation Index0.10.20.70.8-0.10.30.0
Intermittent access day 1 total infusions0.81.42.3-1.21.5-1.30.0
Intermittent access day 15 total infusions0.50.71.8-1.30.7-0.90.0
Intermittent access terminal intake (last 3 days)0.81.02.3-1.50.8-1.00.0
Intermittent access total infusions1.31.63.1-1.71.2-1.30.0
Intermittent access day 1 locomotion0.40.61.2-0.31.1-1.00.0
Intermittent access day 15 total locomotion0.20.40.7-0.50.8-0.70.0
Intermittent access total locomotion1.61.93.2-1.31.8-1.60.0
Intermittent access standard deviation0.10.20.7-0.90.0-0.40.0
Left kidney weight1.04.57.91.8-2.82.60.0
Right kidney weight3.415.323.34.2-4.84.50.0
Cocaine induced anxiety1.72.43.81.9-1.71.70.0
Post-drug Anxiety2.62.84.01.9-1.92.00.0
Baseline Anxiety0.10.10.30.1-0.40.60.0
Tail length0.00.00.1-0.10.3-0.00.0
Length with tail1.14.66.82.5-2.42.60.0
Length without tail4.213.618.64.3-4.24.30.0
Times rat made contact with spout0.10.10.3-0.40.5-0.1-0.1
Lifetime Intake2.02.44.2-2.01.6-1.70.0
Liver weight, left7.312.117.33.9-4.04.20.0
Liver weight, right2.23.95.92.1-2.22.40.0
Locomotor activity1.52.33.1-1.31.6-1.4-1.8
Locomotor testing distance3.25.96.4-2.22.5-2.4-2.5
Locomotor testing rearing2.14.14.5-1.92.1-1.9-2.1
Locomotion in novel chamber2.33.05.51.3-2.22.30.0
Locomotion in novel chamber post-restriction0.00.10.2-0.1-0.30.50.0
Fecal boli incidents, locomotor time 10.81.22.5-1.61.0-1.10.0
Change in fecal boli incidents, locomotor task0.40.41.21.1-0.30.40.0
Time >=10cm from walls, locomotor time 10.10.10.40.20.4-0.60.0
Bouts of movement, locomotor time 10.00.00.10.1-0.2-0.00.0
Total resting periods, locomotor time 10.20.20.4-0.40.4-0.70.0
Rest time, locomotor task time 10.40.50.9-0.60.9-0.90.0
Distance moved, locomotor task time 10.00.00.00.10.1-0.00.0
Vertical activity count, locomotor time 10.30.81.11.0-1.01.10.0
Time >=10cm from walls, locomotor time 20.30.41.0-1.00.5-0.70.0
Bouts of movement, locomotor time 21.72.74.41.8-1.72.10.0
Total resting periods, locomotor time 21.72.94.91.9-1.72.20.0
Rest time, locomotor task time 20.20.20.60.10.8-0.40.0
Distance moved, locomotor task time 20.00.00.1-0.2-0.2-0.20.0
Vertical activity count, locomotor time 20.10.10.2-0.0-0.50.40.0
Light reinforcement 11.23.05.6-2.41.8-1.5-1.0
Light reinforcement 20.30.51.4-1.20.3-0.10.6
Bone: marrow area7.015.217.94.2-4.03.93.4
Bone: maximum diameter2.34.36.32.5-2.11.81.7
Bone: maximum force15.327.130.45.5-5.25.24.8
Bone: maximum moment17.029.732.75.7-5.45.55.1
Mean time between licks in bursts0.00.10.1-0.30.3-0.3-0.3
Mean num. licks in bursts0.30.50.80.2-0.90.70.9
Cd content in liver0.50.50.7-0.80.7-0.5-0.7
Co content in liver0.40.40.5-0.70.6-0.6-0.6
Cu content in liver0.40.41.51.20.00.4-0.2
Fe content in liver1.72.12.3-1.51.4-1.5-1.4
K content in liver0.10.10.20.10.1-0.4-0.3
Mg content in liver0.30.30.7-0.40.8-0.4-0.2
Mn content in liver0.00.00.00.10.1-0.1-0.1
Na content in liver0.00.00.2-0.1-0.0-0.00.4
Rb content in liver1.41.62.8-0.11.7-1.2-1.5
Se content in liver3.23.84.6-1.52.1-2.1-2.0
Sr content in liver0.60.61.21.1-0.00.80.7
Zn content in liver1.11.22.0-1.11.4-1.0-0.9
Bone: minimum diameter8.615.617.64.2-3.84.03.8
Time in familiar zone, hab. session 10.10.10.1-0.40.20.00.3
Time in novel zone, hab. session 10.10.10.20.4-0.10.2-0.1
Total zone transitions, hab. session 10.10.10.4-0.60.2-0.3-0.1
Total locomotion distance, hab. session 10.20.20.40.20.5-0.6-0.6
Locomotion velocity, hab. session 10.10.10.20.30.4-0.4-0.4
Time in familiar zone, hab. session 21.31.32.00.7-1.11.31.4
Time in novel zone, hab. session 21.41.42.2-0.51.3-1.3-1.5
Total zone transitions, hab. session 20.20.20.3-0.50.5-0.5-0.4
Total locomotion distance, hab. session 20.20.30.5-0.10.7-0.7-0.6
Locomotion velocity, hab. session 20.10.20.3-0.00.6-0.5-0.4
Novel to familiar place preference ratio1.31.42.01.4-0.81.21.2
Novelty place preference0.80.91.51.2-0.51.00.9
Time in novel zone, NPP test0.60.71.31.1-0.30.80.8
Total zone transitions, NPP test2.23.23.8-1.32.0-1.9-1.9
Total locomotion distance, NPP test3.04.04.9-1.42.2-2.2-2.2
Locomotion velocity, NPP test1.92.63.4-1.01.8-1.8-1.8
Intraocular pressure6.49.211.1-3.33.3-2.9-2.5
Delta distance traveled before/after self-admin0.00.00.00.1-0.10.10.0
Delta ambulatory time before/after self-admin0.00.00.1-0.30.0-0.10.0
Parametrial fat weight0.61.43.0-1.71.2-1.20.0
Pavlov. Cond. lever latency0.20.20.50.70.4-0.3-0.4
Pavlov. Cond. magazine entry latency0.70.91.5-0.1-1.21.01.0
Pavlov. Cond. change in total contacts1.01.01.7-0.1-1.31.11.1
Pavlov. Cond. index score0.60.71.3-0.2-1.10.90.9
Pavlov. Cond. latency score0.50.60.9-0.3-1.00.80.9
Pavlov. Cond. lever contacts0.30.31.0-1.0-0.40.20.3
Pavlov. Cond. magazine entry number0.30.40.90.10.9-0.7-0.5
Pavlov. Cond. intertrial magazine entries3.33.95.9-0.52.1-2.3-2.4
Pavlov. Cond. lever-magazine prob. diff.0.81.01.90.1-1.41.11.1
Pavlov. Cond. response bias0.20.30.5-0.5-0.70.40.4
Pavlov. Cond. lever latency0.71.01.30.4-1.11.11.2
Pavlov. Cond. magazine entry latency0.40.41.41.20.1-0.2-0.5
Pavlov. Cond. change in total contacts0.60.92.11.4-0.60.90.7
Pavlov. Cond. index score0.30.40.80.90.4-0.4-0.7
Pavlov. Cond. latency score0.30.40.70.80.5-0.5-0.8
Pavlov. Cond. lever contacts0.50.71.0-0.21.0-0.9-1.0
Pavlov. Cond. magazine entry number0.60.82.9-1.70.3-0.20.1
Pavlov. Cond. intertrial magazine entries3.34.99.1-3.02.0-1.9-1.7
Pavlov. Cond. lever-magazine prob. diff.0.30.41.11.10.3-0.3-0.6
Pavlov. Cond. response bias0.20.30.50.30.6-0.6-0.7
Time in closed arm before self-admin1.41.83.41.8-1.41.40.0
Time in closed arm after self-admin0.20.20.50.4-0.70.50.0
Time in open arm before self-admin0.20.20.5-0.30.7-0.60.0
Time in open arm after self-admin0.20.20.5-0.20.7-0.50.0
Bone: periosteal estimation10.522.026.85.2-4.74.74.2
Bone: periosteal perimeter9.616.518.64.3-4.14.13.8
Bone: post-yield work8.212.014.13.8-3.63.43.1
Progressive ratio test 1 active lever presses5.46.69.2-2.93.0-3.00.0
Progressive ratio test 1 breakpoint5.16.38.8-2.82.9-3.00.0
Progressive ratio test 1 inactive lever presses0.81.23.3-1.80.9-0.90.0
Progressive ratio test 2 active lever presses1.41.73.2-1.81.2-1.40.0
Progressive ratio test 2 breakpoint1.31.53.0-1.71.2-1.30.0
Progressive ratio test 2 inactive lever presses0.60.92.5-1.60.7-0.90.0
Incentive Sensitization - Responses0.30.40.70.2-0.80.80.0
Incentive Sensitization - Breakpoint0.20.30.50.1-0.70.70.0
Sum of active levers in priming session hrs 5-60.10.10.10.30.3-0.20.0
Progressive ratio0.71.12.0-0.71.4-1.40.0
Food seeking constrained by brief footshock1.62.03.6-1.01.8-1.90.0
Seeking ratio, punishment vs. effort0.00.00.00.1-0.20.20.0
Retroperitoneal fat weight0.41.53.4-1.11.3-1.80.0
Reaction time number correct1.22.23.01.6-1.31.31.7
Reaction time mean minus median3.69.011.6-3.42.9-2.9-2.8
Reaction time mean minus median AUC2.56.38.0-2.82.5-2.4-2.3
Reaction time num false alarms1.72.33.6-1.51.9-1.4-1.3
Reaction time num false alarms AUC1.92.94.1-1.72.0-1.5-1.5
Reaction time trials correct on left1.22.23.01.6-1.31.31.7
Reaction time trials on left0.91.82.51.4-1.11.11.6
Reaction time mean0.81.21.6-1.21.1-1.0-1.0
Reaction time mean AUC0.50.81.0-1.01.0-0.8-0.8
Median of all reaction times0.00.00.1-0.20.2-0.1-0.2
Reaction time omissions8.312.114.6-3.83.3-3.5-3.3
Reaction time false alarm rate2.53.44.1-2.02.0-1.6-1.8
Reaction time premature initiation rate4.25.87.8-2.82.0-2.3-2.5
Reaction time premature initiations1.32.23.3-1.81.1-1.5-1.5
Std. dev. reaction times4.58.39.7-3.12.9-2.7-2.7
Reaction time trials completed0.91.82.51.4-1.11.11.6
Reaction time trials AUC1.52.93.81.8-1.51.52.0
Run reversals in cocaine runway, females0.30.30.50.2-0.70.70.0
Run reversals in cocaine runway, males0.60.61.2-1.10.8-0.80.0
Latency to leave start box in cocaine runway0.00.00.1-0.3-0.2-0.00.0
Latency to leave start box in cocaine runway, F0.70.81.4-1.20.7-1.00.0
Latency to leave start box in cocaine runway, M1.41.31.81.2-1.31.40.0
Std. dev. time between licks in bursts1.21.72.0-1.31.4-1.3-1.2
Total sessions with >9 infusions2.12.54.4-2.11.6-1.70.0
Short access day 1 total inactive lever presses1.41.83.0-1.71.5-1.50.0
Short access day 10 total inactive lever presses0.00.00.1-0.10.20.30.0
Short access day 1 total infusions0.91.21.7-1.21.3-1.30.0
Short access day 10 total infusions1.51.92.9-1.71.6-1.60.0
Short access total infusions2.83.54.9-2.22.2-2.20.0
Short access day 1 locomotion0.30.40.7-0.60.9-0.70.0
Short access day 10 total locomotion0.20.30.5-0.50.7-0.70.0
Short access total locomotion0.91.01.7-1.11.3-1.10.0
One hour access (0.3 mA shock)0.20.30.5-0.7-0.70.40.0
Compulsive drug intake0.20.20.6-0.1-0.80.60.0
One hour access (shock baseline)0.10.10.3-0.2-0.50.40.0
Social response proportion0.30.30.8-0.30.6-0.4-0.9
Social responses6.68.69.8-3.02.9-2.6-3.1
Social time0.20.30.70.3-0.80.70.2
Soleus weight1.02.93.61.4-1.91.61.9
Bone: stiffness19.331.433.45.5-5.65.85.5
Tibialis anterior weight2.17.29.41.5-3.13.02.8
Time to tail flick, vehicle, before self-admin1.01.01.5-1.21.1-1.20.0
Time to tail flick, vehicle, after self-admin0.20.30.90.4-0.90.50.0
Time to tail flick, test, before self-admin0.10.10.2-0.40.4-0.40.0
Time to tail flick, test, after self-admin0.70.81.20.9-1.01.10.0
Delta time to tail flick, vehicle, before/after SA0.50.50.90.7-1.00.80.0
Delta time to tail flick, test, before/after SA0.30.30.60.5-0.60.80.0
Tibia length4.913.519.44.4-3.33.73.2
Ambulatory time before self-admin1.72.64.6-1.42.2-1.90.0
Ambulatory time after self-admin1.41.73.2-1.21.8-1.50.0
Bone: tissue strength1.51.51.81.3-1.21.31.0
Total heroin consumption0.50.61.21.1-0.70.80.0
Bone: trabecular number4.47.210.43.2-2.32.62.5
Bone: trabecular spacing1.62.13.7-1.91.2-1.3-1.2
Bone: trabecular thickness0.30.30.8-0.3-0.40.60.9
Bone: trabecular tissue density0.50.71.3-0.1-0.51.01.1
Water consumed over 24 hours0.10.10.10.40.40.1-0.0
Number of responses in last shaping day0.10.10.2-0.40.30.10.0