Cdsn

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Cdsn 0.07 0.04 7.8e-05 0.03 0.04 0.03 0.03 3.5e-04 1.2e-05 2.6e-04 3.7e-04
2 Brain gene expression Cdsn 0.06 0.04 1.9e-03 0.02 0.01 0 0 2.5e-03 1.8e-02 1.8e-01 1.0e-01
3 PL gene expression Cdsn 0.13 0.06 3.1e-12 0.12 0.1 0.1 0.11 3.7e-13 5.6e-11 9.0e-11 2.5e-12
4 BLA gene expression Cdsn 0.14 0.07 3.4e-06 0.09 0.09 0.09 0.09 2.6e-05 2.3e-05 1.1e-05 1.6e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.72.82.9-1.61.61.71.7
Area under the delay curve1.41.42.30.3-1.5-1.3-1.2
BMI with tail1.75.68.10.4-2.8-2.8-2.5
BMI without tail3.47.010.00.9-3.0-3.2-2.8
Body weight6.527.334.52.9-5.8-5.9-5.7
Weight adjusted by age3.43.95.21.6-1.8-2.1-2.3
Bone surface0.20.30.60.8-0.5-0.5-0.5
Bone volume0.00.10.1-0.2-0.3-0.3-0.3
Breakpoint value in progressive ratio session1.01.11.5-0.21.21.21.2
Number of licking bursts0.40.41.21.10.40.40.4
Context. condit. distance diff. score4.45.37.11.22.72.52.5
Locomotion velocity, session 10.10.10.20.40.40.30.3
Locomotion distance, session 10.70.81.2-1.11.00.80.8
Locomotion velocity, session 20.10.10.30.60.0-0.0-0.1
Locomotion distance, session 20.40.50.9-0.21.00.70.8
Locomotion velocity, session 30.20.20.9-1.00.0-0.1-0.1
Locomotion distance, session 31.61.82.2-0.81.51.51.5
Stereotopy head waving bouts, day 32.32.73.01.7-1.6-1.6-1.6
Stereotopy head waving duration, day 31.51.71.91.2-1.4-1.4-1.4
Locomotion velocity, session 74.04.45.9-0.62.42.42.4
Locomotion distance, session 74.15.26.6-1.22.62.52.5
Stereotopy head waving bouts, day 71.82.12.80.5-1.6-1.7-1.7
Stereotopy head waving duration, day 72.73.24.20.8-2.0-2.0-2.1
Locomotion velocity, session 81.51.87.32.70.0-0.2-0.2
Locomotion distance, session 82.63.95.41.12.32.12.1
Degree of sensitization distance0.30.30.60.80.50.50.5
Degree of sensitization stereotypy1.11.21.70.2-1.2-1.3-1.3
Conditioned locomotion0.91.01.41.2-0.9-1.0-1.0
Cocaine response after cond. corrected0.50.50.70.00.80.80.8
Cocaine response after cond. not corrected0.50.51.51.2-0.4-0.4-0.4
Cocaine response before conditioning5.56.77.82.0-2.8-2.7-2.7
Saline control response1.11.41.8-1.3-1.1-1.1-1.2
Bone: connectivity density2.54.05.1-1.02.22.32.2
Bone: cortical apparent density0.60.82.2-1.5-0.6-0.5-0.5
Bone: cortical area2.13.24.10.8-2.0-2.0-2.0
Bone: cortical porosity0.50.50.6-0.6-0.8-0.7-0.7
Bone: cortical porosity0.70.71.10.4-1.0-0.9-0.9
Bone: cortical thickness2.33.74.5-1.3-2.1-2.1-2.1
Bone: cortical thickness0.80.92.8-1.7-0.5-0.6-0.5
Bone: cortical tissue density0.50.61.8-1.3-0.5-0.5-0.4
Condit. Reinf. active minus inactive responses0.91.01.6-0.51.31.01.1
Condit. Reinf. active-inactive response ratio0.10.20.5-0.70.30.00.1
Condit. Reinf. active responses1.41.72.2-0.81.51.41.4
Condit. Reinf. inactive responses2.32.73.1-1.41.61.71.7
Incentive salience index mean1.21.52.10.61.51.31.3
Condit. Reinf. lever presses2.02.73.11.21.81.71.8
Condit. Reinf. active minus inactive responses1.31.62.00.7-1.4-1.4-1.4
Condit. Reinf. active-inactive response ratio3.13.33.81.5-1.9-1.9-2.0
Condit. Reinf. active responses0.00.00.0-0.10.0-0.00.0
Condit. Reinf. inactive responses1.82.22.6-1.21.61.61.6
Condit. Reinf. lever presses0.40.60.7-0.60.80.80.8
Condit. Reinf. lever reinforcers received0.00.00.0-0.10.20.20.2
Conditioned reinforcement - actives0.20.20.40.2-0.4-0.6-0.6
Conditioned reinforcement - inactives0.80.91.2-0.4-1.0-1.0-1.1
Conditioned locomotion0.00.10.20.40.1-0.1-0.0
Patch foraging indifference point 0 sec0.50.82.6-1.6-0.5-0.4-0.5
Patch foraging indifference point AUC2.52.93.70.8-1.9-1.9-1.9
Delay disc. indifference point, 0s delay0.60.71.31.1-0.6-0.8-0.7
Delay disc. indifference point, 16s delay0.80.81.4-1.0-1.2-0.7-0.6
Delay disc. indifference point, 2s delay2.32.53.21.3-1.5-1.8-1.7
Delay disc. indifference point, 24s delay0.30.30.8-0.4-0.9-0.4-0.5
Delay disc. indifference point, 4s delay2.72.83.41.3-1.8-1.8-1.7
Delay disc. indifference point, 8s delay0.10.10.30.1-0.6-0.3-0.4
Indifference point function ln k0.30.40.60.50.80.60.7
Indifference point function log k0.30.40.60.50.80.60.7
Patch foraging total patch changes 0 sec0.71.13.1-1.8-0.7-0.6-0.7
Patch foraging total patch changes 12 sec0.81.01.9-1.4-0.9-0.8-0.9
Patch foraging total patch changes 18 sec1.21.56.0-2.5-0.1-0.0-0.1
Patch foraging total patch changes 24 sec2.22.67.5-2.71.11.10.8
Patch foraging total patch changes 6 sec0.81.23.8-2.0-0.6-0.5-0.7
Patch foraging time to switch 0 sec0.60.91.7-1.30.90.70.6
Patch foraging water rate 0 sec0.40.60.90.4-0.9-0.9-0.8
Patch foraging water rate 12 sec0.30.41.0-1.00.40.60.4
Patch foraging water rate 18 sec0.10.20.30.3-0.5-0.6-0.3
Patch foraging water rate 24 sec1.42.03.00.4-1.6-1.7-1.5
Patch foraging water rate 6 sec0.10.10.4-0.60.10.00.1
Seeking ratio, delayed vs. immediate footshock0.50.61.00.1-0.8-1.0-0.8
Distance traveled before self-admin0.30.31.01.0-0.1-0.2-0.2
Distance traveled after self-admin0.40.40.70.8-0.8-0.4-0.5
Extensor digitorum longus weight0.20.72.21.5-0.3-0.4-0.4
Bone: elastic displacement0.30.31.0-1.0-0.3-0.2-0.3
Bone: elastic work1.62.13.10.1-1.8-1.6-1.6
Bone: endosteal estimation3.98.415.94.0-2.4-2.4-2.5
Bone: endosteal perimeter1.53.111.33.4-0.5-0.5-0.6
Epididymis fat weight2.55.816.6-4.1-1.7-1.5-1.2
Delta time in closed arm before/after self-admin0.20.20.30.5-0.5-0.4-0.3
Delta time in open arm before/after self-admin0.10.10.4-0.6-0.20.00.0
Diff in mean of infusions in LGA sessions3.84.26.5-1.02.22.52.1
Delay discount exponential model param1.31.42.3-0.21.51.31.2
Extinction: sum of active levers before priming0.60.60.8-0.30.90.80.9
Active lever presses in extinction session 60.20.20.6-0.8-0.10.30.3
Bone: final force5.18.311.20.5-3.3-3.3-3.3
Bone: final moment4.77.710.40.5-3.2-3.2-3.2
Food consumed during 24 hour testing period1.31.52.71.6-1.1-1.1-1.1
Glucose2.03.010.93.30.50.60.6
Heart weight0.10.20.30.4-0.3-0.5-0.4
Delay discount hyperbolic model param1.51.62.4-0.51.51.41.3
Intermittent access intake day 1-15 change0.50.50.9-0.3-1.0-0.7-0.8
Intermittent access intake escalation0.20.20.40.4-0.7-0.4-0.5
Intermittent access intake escalation 20.70.72.61.6-0.4-0.0-0.1
Intermitt. access day 1 inactive lever presses0.70.72.01.4-0.5-0.4-0.5
Intermitt. access day 15 inactive lever presses2.52.73.70.5-1.9-1.8-1.9
Intermitt. access escalation Index2.82.53.9-0.42.01.71.8
Intermittent access day 1 total infusions0.70.81.1-0.71.10.90.9
Intermittent access day 15 total infusions0.20.20.3-0.60.50.40.3
Intermittent access terminal intake (last 3 days)0.00.00.1-0.2-0.1-0.0-0.2
Intermittent access total infusions0.10.10.3-0.50.40.20.2
Intermittent access day 1 locomotion0.30.30.60.20.80.60.6
Intermittent access day 15 total locomotion0.70.80.91.0-0.9-0.9-0.9
Intermittent access total locomotion0.40.40.50.7-0.7-0.6-0.6
Intermittent access standard deviation2.02.13.3-0.2-1.8-1.6-1.6
Left kidney weight3.710.513.71.4-3.5-3.7-3.7
Right kidney weight3.59.913.02.1-3.4-3.6-3.3
Cocaine induced anxiety1.82.12.80.61.71.71.5
Post-drug Anxiety0.60.60.70.60.90.90.8
Baseline Anxiety0.10.10.3-0.6-0.3-0.2-0.2
Tail length5.617.118.14.1-4.1-4.3-4.0
Length with tail5.018.519.83.8-4.4-4.5-4.4
Length without tail3.78.09.42.4-3.1-2.8-3.0
Times rat made contact with spout2.52.85.7-2.41.31.41.4
Lifetime Intake0.10.10.1-0.30.40.20.1
Liver weight, left0.81.22.31.5-0.9-0.8-1.0
Liver weight, right4.67.711.03.3-2.6-2.5-2.6
Locomotor activity1.72.74.32.1-1.3-1.5-1.5
Locomotor testing distance0.20.40.80.9-0.4-0.5-0.6
Locomotor testing rearing0.71.11.81.3-0.9-0.9-0.9
Locomotion in novel chamber0.60.71.00.4-1.0-0.8-1.0
Locomotion in novel chamber post-restriction0.50.61.0-0.0-1.0-0.9-0.7
Fecal boli incidents, locomotor time 10.60.71.3-0.51.10.80.8
Change in fecal boli incidents, locomotor task1.01.01.41.2-1.1-0.6-1.0
Time >=10cm from walls, locomotor time 11.41.43.11.8-1.0-0.9-0.9
Bouts of movement, locomotor time 10.90.91.60.20.91.11.2
Total resting periods, locomotor time 10.50.50.80.50.50.80.9
Rest time, locomotor task time 10.20.31.01.0-0.3-0.0-0.1
Distance moved, locomotor task time 10.40.40.7-0.3-0.6-0.9-0.7
Vertical activity count, locomotor time 10.30.40.8-0.5-0.3-0.9-0.6
Time >=10cm from walls, locomotor time 20.40.41.31.1-0.0-0.5-0.4
Bouts of movement, locomotor time 20.70.81.31.1-0.7-0.8-0.8
Total resting periods, locomotor time 20.70.72.01.4-0.5-0.5-0.6
Rest time, locomotor task time 21.11.35.02.2-0.10.10.1
Distance moved, locomotor task time 20.50.61.1-1.0-0.4-0.8-0.6
Vertical activity count, locomotor time 20.20.20.7-0.80.1-0.2-0.0
Light reinforcement 10.10.10.3-0.6-0.20.1-0.2
Light reinforcement 20.60.91.21.0-1.1-0.7-0.9
Bone: marrow area3.88.215.33.9-2.4-2.4-2.4
Bone: maximum diameter1.42.66.82.6-1.1-1.1-1.1
Bone: maximum force4.47.710.30.7-3.2-3.2-3.1
Bone: maximum moment4.27.29.60.8-3.1-3.1-3.0
Mean time between licks in bursts0.91.35.32.30.00.0-0.0
Mean num. licks in bursts1.11.34.9-2.20.30.30.3
Cd content in liver0.30.40.5-0.6-0.7-0.6-0.6
Co content in liver1.01.11.4-0.8-1.2-1.1-1.1
Cu content in liver4.45.36.7-2.62.32.22.1
Fe content in liver0.40.50.8-0.9-0.7-0.5-0.7
K content in liver0.10.10.20.20.30.40.5
Mg content in liver2.02.02.31.21.51.51.5
Mn content in liver1.92.26.72.60.90.80.7
Na content in liver0.00.00.0-0.1-0.1-0.2-0.2
Rb content in liver0.81.01.5-0.10.91.21.2
Se content in liver1.11.33.61.90.70.80.7
Sr content in liver0.90.81.71.3-0.6-0.7-0.8
Zn content in liver0.10.10.40.60.30.1-0.0
Bone: minimum diameter1.73.28.22.9-1.3-1.2-1.2
Time in familiar zone, hab. session 15.14.87.3-2.71.92.02.0
Time in novel zone, hab. session 12.72.64.52.1-1.4-1.4-1.4
Total zone transitions, hab. session 10.60.91.2-0.41.11.01.1
Total locomotion distance, hab. session 10.60.81.2-0.51.11.01.0
Locomotion velocity, hab. session 10.30.40.6-0.50.80.60.7
Time in familiar zone, hab. session 20.60.61.2-1.10.50.60.7
Time in novel zone, hab. session 20.40.40.40.4-0.6-0.6-0.7
Total zone transitions, hab. session 20.00.00.1-0.20.20.10.1
Total locomotion distance, hab. session 21.21.52.0-0.61.41.31.4
Locomotion velocity, hab. session 21.21.62.3-0.51.51.41.4
Novel to familiar place preference ratio0.00.00.2-0.40.1-0.0-0.0
Novelty place preference0.00.00.1-0.2-0.2-0.3-0.3
Time in novel zone, NPP test0.10.10.2-0.1-0.4-0.4-0.4
Total zone transitions, NPP test1.21.72.6-0.41.61.41.4
Total locomotion distance, NPP test1.41.92.7-0.81.61.41.5
Locomotion velocity, NPP test2.23.24.6-1.02.11.91.9
Intraocular pressure1.01.41.8-0.91.31.21.3
Delta distance traveled before/after self-admin0.80.91.8-0.1-1.4-0.8-1.0
Delta ambulatory time before/after self-admin0.40.40.80.3-0.9-0.4-0.7
Parametrial fat weight1.93.65.50.2-2.1-2.4-2.2
Pavlov. Cond. lever latency1.11.33.8-1.9-0.8-0.7-0.7
Pavlov. Cond. magazine entry latency0.81.01.81.30.90.90.9
Pavlov. Cond. change in total contacts1.11.22.81.7-0.8-0.8-0.8
Pavlov. Cond. index score1.21.53.81.90.90.90.8
Pavlov. Cond. latency score1.11.34.42.10.60.60.5
Pavlov. Cond. lever contacts1.11.34.92.20.30.20.2
Pavlov. Cond. magazine entry number1.21.41.8-0.8-1.4-1.3-1.3
Pavlov. Cond. intertrial magazine entries1.11.43.7-1.90.60.80.9
Pavlov. Cond. lever-magazine prob. diff.1.21.53.21.81.01.01.0
Pavlov. Cond. response bias1.21.52.21.51.21.11.1
Pavlov. Cond. lever latency0.30.50.70.8-0.6-0.6-0.6
Pavlov. Cond. magazine entry latency0.70.80.90.8-0.9-1.0-1.0
Pavlov. Cond. change in total contacts0.20.30.4-0.6-0.5-0.5-0.5
Pavlov. Cond. index score0.00.00.0-0.2-0.1-0.1-0.1
Pavlov. Cond. latency score0.10.10.1-0.2-0.3-0.3-0.3
Pavlov. Cond. lever contacts0.40.61.9-1.40.40.40.4
Pavlov. Cond. magazine entry number0.30.40.5-0.20.70.70.7
Pavlov. Cond. intertrial magazine entries1.01.31.60.81.21.31.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.2-0.1-0.1-0.1
Pavlov. Cond. response bias0.10.20.5-0.70.30.30.3
Time in closed arm before self-admin0.00.00.0-0.10.2-0.1-0.0
Time in closed arm after self-admin0.50.50.7-0.2-0.9-0.9-0.8
Time in open arm before self-admin0.30.30.50.40.60.70.5
Time in open arm after self-admin0.70.81.4-0.20.91.20.9
Bone: periosteal estimation3.67.48.12.8-2.7-2.7-2.7
Bone: periosteal perimeter2.03.35.72.4-1.6-1.6-1.6
Bone: post-yield work0.50.62.51.6-0.1-0.1-0.0
Progressive ratio test 1 active lever presses0.30.30.6-0.20.70.60.5
Progressive ratio test 1 breakpoint0.30.30.5-0.20.70.50.4
Progressive ratio test 1 inactive lever presses0.20.20.8-0.90.10.20.2
Progressive ratio test 2 active lever presses0.91.01.4-0.91.21.00.9
Progressive ratio test 2 breakpoint1.51.72.1-1.21.51.31.3
Progressive ratio test 2 inactive lever presses0.20.30.50.4-0.4-0.5-0.7
Incentive Sensitization - Responses0.80.80.8-0.90.90.90.9
Incentive Sensitization - Breakpoint0.90.91.0-0.81.01.01.0
Sum of active levers in priming session hrs 5-60.40.30.5-0.30.70.70.6
Progressive ratio4.24.87.00.2-2.5-2.6-2.5
Food seeking constrained by brief footshock0.00.00.1-0.30.10.00.1
Seeking ratio, punishment vs. effort3.54.35.9-0.42.42.42.3
Retroperitoneal fat weight0.30.91.40.1-1.0-1.2-1.1
Reaction time number correct0.30.51.9-1.4-0.1-0.2-0.1
Reaction time mean minus median1.01.35.22.30.00.20.0
Reaction time mean minus median AUC0.71.03.41.80.20.50.3
Reaction time num false alarms0.50.71.10.8-1.0-0.8-0.7
Reaction time num false alarms AUC0.81.11.50.9-1.2-1.0-1.0
Reaction time trials correct on left0.30.51.9-1.4-0.1-0.2-0.1
Reaction time trials on left0.30.41.7-1.3-0.1-0.2-0.2
Reaction time mean1.21.75.72.40.50.70.6
Reaction time mean AUC1.21.65.52.30.50.60.6
Median of all reaction times0.91.23.92.00.50.60.6
Reaction time omissions0.71.03.51.90.30.40.3
Reaction time false alarm rate0.81.22.71.6-1.0-0.8-0.7
Reaction time premature initiation rate1.11.42.10.6-1.4-1.2-1.4
Reaction time premature initiations1.21.72.5-0.1-1.4-1.4-1.6
Std. dev. reaction times1.21.76.82.6-0.10.1-0.1
Reaction time trials completed0.30.41.7-1.3-0.1-0.2-0.2
Reaction time trials AUC0.30.41.7-1.3-0.1-0.2-0.1
Run reversals in cocaine runway, females0.30.31.3-1.2-0.0-0.10.0
Run reversals in cocaine runway, males1.51.43.61.9-0.6-0.9-1.0
Latency to leave start box in cocaine runway0.10.20.40.6-0.1-0.1-0.5
Latency to leave start box in cocaine runway, F0.20.30.50.40.70.60.3
Latency to leave start box in cocaine runway, M1.21.11.70.2-1.2-1.1-1.3
Std. dev. time between licks in bursts1.51.76.72.6-0.3-0.3-0.4
Total sessions with >9 infusions0.00.00.00.20.2-0.1-0.1
Short access day 1 total inactive lever presses0.91.03.61.9-0.3-0.2-0.4
Short access day 10 total inactive lever presses0.20.20.80.9-0.3-0.1-0.1
Short access day 1 total infusions0.40.40.80.10.90.70.6
Short access day 10 total infusions0.00.00.00.10.0-0.1-0.2
Short access total infusions0.00.00.00.20.1-0.2-0.2
Short access day 1 locomotion3.23.44.6-0.32.12.22.1
Short access day 10 total locomotion0.60.72.61.6-0.3-0.1-0.0
Short access total locomotion0.30.30.40.70.60.40.4
One hour access (0.3 mA shock)0.70.91.4-0.11.21.01.0
Compulsive drug intake2.72.84.40.12.11.81.8
One hour access (shock baseline)0.40.40.70.3-0.7-0.7-0.8
Social response proportion0.30.31.11.0-0.1-0.1-0.2
Social responses0.20.20.30.5-0.5-0.4-0.4
Social time1.31.86.82.6-0.3-0.2-0.4
Soleus weight1.75.117.64.2-0.9-1.0-1.0
Bone: stiffness0.91.52.1-0.2-1.4-1.4-1.3
Tibialis anterior weight0.10.51.8-1.40.1-0.00.0
Time to tail flick, vehicle, before self-admin0.10.10.20.50.10.4-0.0
Time to tail flick, vehicle, after self-admin0.60.61.01.00.60.70.8
Time to tail flick, test, before self-admin0.10.10.3-0.5-0.1-0.3-0.3
Time to tail flick, test, after self-admin0.80.91.30.01.01.11.2
Delta time to tail flick, vehicle, before/after SA0.60.61.1-0.20.80.71.1
Delta time to tail flick, test, before/after SA1.21.11.6-0.41.01.21.3
Tibia length3.39.411.53.4-3.0-2.9-2.9
Ambulatory time before self-admin0.10.10.20.4-0.1-0.3-0.2
Ambulatory time after self-admin0.20.30.40.6-0.6-0.3-0.4
Bone: tissue strength3.93.85.20.5-2.3-2.2-2.2
Total heroin consumption0.00.00.0-0.0-0.00.10.1
Bone: trabecular number1.93.03.3-1.81.71.71.7
Bone: trabecular spacing4.45.76.51.9-2.5-2.5-2.5
Bone: trabecular thickness1.41.61.7-1.31.21.31.3
Bone: trabecular tissue density1.72.33.20.4-1.7-1.8-1.7
Water consumed over 24 hours0.10.10.40.7-0.1-0.1-0.1
Number of responses in last shaping day0.40.41.01.0-0.3-0.4-0.6