Ccl21

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Ccl21 0.11 0.06 5.4e-14 0.14 0.14 0.14 0.14 1.3e-15 3.5e-15 7.0e-15 7.9e-15
2 Liver gene expression Ccl21 0.09 0.06 1.3e-09 0.07 0.08 0.07 0.07 1.4e-08 7.5e-09 1.3e-08 1.2e-08
3 IL gene expression Ccl21 0.28 0.15 1.1e-05 0.19 0.19 0.19 0.19 3.0e-05 2.9e-05 3.1e-05 2.0e-05
4 Brain gene expression Ccl21 0.05 0.04 3.6e-04 0.03 0.01 0.04 0.03 1.2e-03 1.3e-02 3.2e-04 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.42.33.71.41.4-1.31.9
Area under the delay curve0.50.51.0-0.5-0.60.71.0
BMI with tail1.75.67.02.62.6-2.22.1
BMI without tail6.012.514.23.63.8-3.23.5
Body weight3.816.120.53.94.0-3.54.5
Weight adjusted by age0.50.61.70.30.3-0.61.3
Bone surface1.42.55.61.21.2-1.22.4
Bone volume1.22.14.31.11.1-1.22.1
Breakpoint value in progressive ratio session0.90.93.4-0.3-0.40.31.9
Number of licking bursts4.75.67.32.72.7-2.70.8
Context. condit. distance diff. score0.20.30.7-0.4-0.40.3-0.8
Locomotion velocity, session 12.12.35.81.11.0-1.12.4
Locomotion distance, session 10.81.02.10.90.8-0.81.4
Locomotion velocity, session 22.02.32.51.51.6-1.61.5
Locomotion distance, session 22.83.94.32.12.0-2.11.8
Locomotion velocity, session 30.40.51.50.50.4-0.41.2
Locomotion distance, session 32.32.53.41.81.8-1.51.2
Stereotopy head waving bouts, day 30.10.10.4-0.10.0-0.6-0.0
Stereotopy head waving duration, day 30.10.10.3-0.6-0.4-0.3-0.0
Locomotion velocity, session 70.20.20.9-0.1-0.2-0.10.9
Locomotion distance, session 70.30.40.50.70.6-0.50.7
Stereotopy head waving bouts, day 72.63.04.81.71.8-2.21.0
Stereotopy head waving duration, day 71.11.32.40.91.0-1.51.1
Locomotion velocity, session 80.30.30.50.40.3-0.70.7
Locomotion distance, session 80.30.50.60.80.6-0.70.6
Degree of sensitization distance0.80.81.2-1.1-1.10.8-0.4
Degree of sensitization stereotypy1.41.62.51.21.3-1.60.8
Conditioned locomotion0.30.31.20.10.0-0.2-1.1
Cocaine response after cond. corrected0.70.81.2-1.0-1.10.90.3
Cocaine response after cond. not corrected0.50.50.7-0.7-0.90.60.8
Cocaine response before conditioning1.11.31.91.11.1-1.41.0
Saline control response1.72.23.11.41.4-1.81.2
Bone: connectivity density0.71.22.80.80.8-0.71.7
Bone: cortical apparent density0.10.10.2-0.4-0.30.3-0.4
Bone: cortical area2.43.54.31.91.9-1.72.1
Bone: cortical porosity1.01.11.5-0.8-0.81.2-1.2
Bone: cortical porosity0.10.10.2-0.1-0.10.5-0.4
Bone: cortical thickness0.50.91.20.91.0-0.71.1
Bone: cortical thickness0.10.10.2-0.4-0.40.4-0.3
Bone: cortical tissue density0.10.20.2-0.5-0.40.3-0.5
Condit. Reinf. active minus inactive responses0.50.50.70.80.7-0.50.9
Condit. Reinf. active-inactive response ratio0.60.71.0-0.9-0.91.0-0.3
Condit. Reinf. active responses2.63.23.61.91.9-1.81.5
Condit. Reinf. inactive responses3.03.54.32.02.0-2.11.4
Incentive salience index mean4.45.46.22.52.4-2.22.1
Condit. Reinf. lever presses11.415.217.14.14.1-3.93.4
Condit. Reinf. active minus inactive responses0.60.81.01.00.9-0.80.9
Condit. Reinf. active-inactive response ratio0.10.10.20.20.2-0.00.4
Condit. Reinf. active responses2.53.53.92.01.9-1.71.9
Condit. Reinf. inactive responses2.93.54.32.02.1-1.81.5
Condit. Reinf. lever presses2.33.14.11.61.7-1.62.0
Condit. Reinf. lever reinforcers received2.94.14.42.12.0-1.92.1
Conditioned reinforcement - actives1.31.33.51.10.5-0.6-1.9
Conditioned reinforcement - inactives1.82.07.20.50.2-0.6-2.7
Conditioned locomotion0.60.71.71.30.7-0.70.0
Patch foraging indifference point 0 sec0.60.91.21.10.8-1.00.9
Patch foraging indifference point AUC7.28.39.83.13.1-2.52.7
Delay disc. indifference point, 0s delay0.80.91.2-1.1-1.11.0-0.4
Delay disc. indifference point, 16s delay0.40.40.6-0.6-0.80.7-0.2
Delay disc. indifference point, 2s delay0.00.00.0-0.00.0-0.1-0.2
Delay disc. indifference point, 24s delay0.20.20.4-0.3-0.40.60.1
Delay disc. indifference point, 4s delay0.40.41.2-0.2-0.30.51.1
Delay disc. indifference point, 8s delay0.80.93.40.10.00.11.9
Indifference point function ln k1.82.53.5-1.8-1.91.4-1.2
Indifference point function log k1.82.53.5-1.8-1.91.4-1.2
Patch foraging total patch changes 0 sec1.01.62.11.41.2-1.31.1
Patch foraging total patch changes 12 sec1.51.93.11.81.7-1.20.5
Patch foraging total patch changes 18 sec0.91.21.81.21.0-0.81.3
Patch foraging total patch changes 24 sec2.32.83.41.81.8-1.51.5
Patch foraging total patch changes 6 sec3.04.55.52.42.1-2.02.0
Patch foraging time to switch 0 sec2.74.14.5-2.1-2.12.0-1.9
Patch foraging water rate 0 sec1.52.43.01.71.7-1.51.2
Patch foraging water rate 12 sec0.20.41.10.30.2-0.41.0
Patch foraging water rate 18 sec0.10.10.30.40.5-0.3-0.2
Patch foraging water rate 24 sec0.10.20.3-0.5-0.30.3-0.5
Patch foraging water rate 6 sec1.11.61.91.31.3-1.41.1
Seeking ratio, delayed vs. immediate footshock3.23.74.42.02.1-2.01.5
Distance traveled before self-admin7.47.99.92.92.8-3.22.2
Distance traveled after self-admin1.31.52.61.31.3-1.60.2
Extensor digitorum longus weight5.923.124.74.84.7-5.04.8
Bone: elastic displacement5.56.28.0-2.6-2.62.8-1.7
Bone: elastic work2.53.24.3-1.9-1.92.1-1.1
Bone: endosteal estimation1.83.84.91.71.7-2.12.2
Bone: endosteal perimeter1.73.54.51.81.7-2.11.8
Epididymis fat weight1.33.06.61.41.3-1.22.6
Delta time in closed arm before/after self-admin1.31.31.71.11.3-0.91.2
Delta time in open arm before/after self-admin0.10.10.2-0.3-0.50.3-0.1
Diff in mean of infusions in LGA sessions0.50.51.6-0.6-0.30.11.3
Delay discount exponential model param0.50.51.20.40.6-0.7-1.1
Extinction: sum of active levers before priming1.71.61.8-1.3-1.31.3-1.2
Active lever presses in extinction session 61.11.02.0-0.9-1.01.40.6
Bone: final force2.03.24.71.61.6-1.72.2
Bone: final moment1.52.54.21.31.3-1.52.1
Food consumed during 24 hour testing period1.01.21.81.31.3-1.00.5
Glucose1.01.51.91.41.4-1.01.2
Heart weight1.52.15.11.21.1-0.82.3
Delay discount hyperbolic model param0.50.51.40.30.5-0.6-1.2
Intermittent access intake day 1-15 change0.30.30.60.70.8-0.6-0.1
Intermittent access intake escalation0.60.61.00.91.0-0.80.0
Intermittent access intake escalation 20.80.81.10.91.0-1.0-0.7
Intermitt. access day 1 inactive lever presses0.60.60.90.90.9-0.80.4
Intermitt. access day 15 inactive lever presses0.20.20.30.40.5-0.6-0.2
Intermitt. access escalation Index1.81.62.11.11.2-1.21.5
Intermittent access day 1 total infusions0.20.20.4-0.3-0.60.6-0.2
Intermittent access day 15 total infusions0.40.40.80.90.7-0.6-0.2
Intermittent access terminal intake (last 3 days)1.11.31.91.41.0-1.2-0.9
Intermittent access total infusions0.70.81.61.30.9-0.9-0.1
Intermittent access day 1 locomotion1.11.11.8-1.0-1.21.4-0.6
Intermittent access day 15 total locomotion0.70.81.3-0.7-1.01.2-0.5
Intermittent access total locomotion0.80.91.2-0.7-0.91.1-1.0
Intermittent access standard deviation0.50.60.70.90.7-0.6-0.8
Left kidney weight0.51.41.91.41.4-1.20.6
Right kidney weight0.10.20.30.30.4-0.40.5
Cocaine induced anxiety1.01.22.6-0.8-1.00.7-1.6
Post-drug Anxiety0.50.60.80.90.8-0.90.1
Baseline Anxiety0.80.91.10.81.0-0.71.1
Tail length3.610.916.03.03.2-2.94.0
Length with tail1.66.012.42.02.1-1.93.5
Length without tail0.30.60.8-0.9-0.90.70.3
Times rat made contact with spout0.40.50.90.60.7-1.00.4
Lifetime Intake1.21.32.51.61.1-1.3-0.0
Liver weight, left0.40.61.11.01.0-0.7-0.3
Liver weight, right0.10.10.5-0.1-0.1-0.10.7
Locomotor activity0.00.10.20.20.20.20.4
Locomotor testing distance0.10.20.80.30.20.10.9
Locomotor testing rearing1.32.03.01.71.4-1.41.1
Locomotion in novel chamber0.60.72.1-0.4-0.40.5-1.5
Locomotion in novel chamber post-restriction0.81.01.31.11.1-1.10.5
Fecal boli incidents, locomotor time 11.21.41.9-1.4-1.21.4-0.4
Change in fecal boli incidents, locomotor task2.52.44.31.51.2-1.32.1
Time >=10cm from walls, locomotor time 10.40.41.30.30.3-0.31.2
Bouts of movement, locomotor time 11.61.82.2-1.5-1.41.3-1.1
Total resting periods, locomotor time 12.32.63.3-1.8-1.71.6-1.2
Rest time, locomotor task time 13.23.65.1-1.9-1.61.8-2.3
Distance moved, locomotor task time 12.93.13.71.91.8-1.91.4
Vertical activity count, locomotor time 11.81.92.11.41.4-1.41.2
Time >=10cm from walls, locomotor time 20.10.10.10.30.3-0.2-0.2
Bouts of movement, locomotor time 21.21.22.40.90.9-1.01.6
Total resting periods, locomotor time 20.50.61.30.50.5-0.71.1
Rest time, locomotor task time 21.01.11.5-1.2-1.10.9-1.0
Distance moved, locomotor task time 20.20.30.50.50.7-0.4-0.3
Vertical activity count, locomotor time 20.40.50.80.70.9-0.60.6
Light reinforcement 12.13.84.92.22.0-1.81.9
Light reinforcement 20.81.01.71.31.0-1.10.5
Bone: marrow area1.84.05.21.71.7-2.22.3
Bone: maximum diameter2.74.95.22.22.2-2.32.2
Bone: maximum force3.45.96.62.42.4-2.62.3
Bone: maximum moment2.64.65.02.02.1-2.22.2
Mean time between licks in bursts0.20.30.5-0.6-0.70.40.6
Mean num. licks in bursts2.32.74.0-2.0-1.91.7-0.5
Cd content in liver0.70.71.50.80.9-1.2-0.1
Co content in liver1.21.43.1-1.0-1.00.8-1.8
Cu content in liver2.02.45.8-1.3-1.10.9-2.4
Fe content in liver0.60.71.30.70.6-1.10.7
K content in liver0.30.30.4-0.4-0.40.6-0.6
Mg content in liver0.80.81.3-0.9-0.91.1-0.6
Mn content in liver0.10.10.10.20.3-0.3-0.1
Na content in liver1.92.03.9-1.2-1.11.1-2.0
Rb content in liver3.13.95.4-2.3-2.32.1-0.7
Se content in liver1.11.42.31.41.5-1.2-0.1
Sr content in liver0.50.50.70.70.6-0.60.9
Zn content in liver0.10.10.3-0.0-0.00.1-0.5
Bone: minimum diameter0.10.20.7-0.3-0.30.10.8
Time in familiar zone, hab. session 10.90.91.2-0.9-0.80.8-1.1
Time in novel zone, hab. session 10.40.40.8-0.8-0.90.10.1
Total zone transitions, hab. session 10.00.00.10.1-0.00.30.2
Total locomotion distance, hab. session 10.10.20.40.40.40.2-0.6
Locomotion velocity, hab. session 10.70.91.71.31.3-0.50.0
Time in familiar zone, hab. session 20.80.91.2-1.1-1.00.9-0.7
Time in novel zone, hab. session 20.40.40.7-0.8-0.90.3-0.3
Total zone transitions, hab. session 20.50.61.01.00.9-0.70.3
Total locomotion distance, hab. session 20.50.71.11.11.0-0.7-0.2
Locomotion velocity, hab. session 20.70.91.51.21.2-0.8-0.2
Novel to familiar place preference ratio1.92.03.1-1.7-1.81.3-0.3
Novelty place preference3.03.04.5-2.1-2.11.7-0.6
Time in novel zone, NPP test3.73.85.5-2.3-2.31.9-0.9
Total zone transitions, NPP test0.81.21.61.21.1-0.91.0
Total locomotion distance, NPP test1.52.13.51.91.7-1.20.6
Locomotion velocity, NPP test2.02.84.42.12.0-1.31.1
Intraocular pressure2.23.14.12.02.0-1.81.1
Delta distance traveled before/after self-admin0.90.92.6-0.7-0.70.6-1.6
Delta ambulatory time before/after self-admin1.71.83.2-1.2-1.21.1-1.8
Parametrial fat weight0.20.30.60.70.8-0.40.1
Pavlov. Cond. lever latency8.410.611.8-3.4-3.43.4-2.8
Pavlov. Cond. magazine entry latency0.81.12.40.80.7-0.81.6
Pavlov. Cond. change in total contacts2.93.13.71.91.9-1.71.6
Pavlov. Cond. index score3.54.54.82.22.2-2.21.9
Pavlov. Cond. latency score3.34.24.52.12.1-2.11.8
Pavlov. Cond. lever contacts5.86.97.82.72.8-2.82.2
Pavlov. Cond. magazine entry number1.01.21.9-1.1-1.10.8-1.4
Pavlov. Cond. intertrial magazine entries0.10.10.20.50.5-0.3-0.1
Pavlov. Cond. lever-magazine prob. diff.3.03.74.02.02.0-2.01.7
Pavlov. Cond. response bias3.94.85.42.22.1-2.12.3
Pavlov. Cond. lever latency2.33.14.6-1.7-1.82.1-1.2
Pavlov. Cond. magazine entry latency0.30.40.9-0.6-0.60.00.9
Pavlov. Cond. change in total contacts0.81.23.00.60.7-0.91.7
Pavlov. Cond. index score0.40.51.40.20.3-0.81.2
Pavlov. Cond. latency score0.50.61.20.30.4-0.91.1
Pavlov. Cond. lever contacts1.31.82.71.21.3-1.61.3
Pavlov. Cond. magazine entry number0.40.51.90.1-0.00.5-1.4
Pavlov. Cond. intertrial magazine entries0.20.30.60.80.7-0.20.1
Pavlov. Cond. lever-magazine prob. diff.0.40.61.60.20.3-0.81.3
Pavlov. Cond. response bias0.91.32.80.70.8-1.11.7
Time in closed arm before self-admin3.94.45.1-1.8-2.02.3-2.3
Time in closed arm after self-admin0.50.50.8-0.5-0.60.8-0.9
Time in open arm before self-admin4.34.66.42.01.9-2.22.5
Time in open arm after self-admin2.02.22.61.41.3-1.61.6
Bone: periosteal estimation2.34.86.42.02.0-2.22.5
Bone: periosteal perimeter1.01.72.21.21.1-1.41.5
Bone: post-yield work2.33.13.71.61.6-1.91.9
Progressive ratio test 1 active lever presses0.50.50.80.90.6-0.9-0.3
Progressive ratio test 1 breakpoint0.70.71.21.10.8-1.1-0.1
Progressive ratio test 1 inactive lever presses1.11.21.91.31.1-1.40.1
Progressive ratio test 2 active lever presses0.50.51.10.80.3-0.6-1.0
Progressive ratio test 2 breakpoint0.30.41.10.50.0-0.3-1.0
Progressive ratio test 2 inactive lever presses0.70.81.51.20.7-0.9-0.5
Incentive Sensitization - Responses0.80.82.40.70.3-0.6-1.5
Incentive Sensitization - Breakpoint0.70.72.40.50.2-0.4-1.6
Sum of active levers in priming session hrs 5-62.92.83.7-1.7-1.91.8-1.1
Progressive ratio0.10.10.3-0.3-0.20.3-0.6
Food seeking constrained by brief footshock8.110.013.13.63.4-3.61.4
Seeking ratio, punishment vs. effort2.63.24.52.01.8-2.10.9
Retroperitoneal fat weight0.10.40.8-0.5-0.50.90.5
Reaction time number correct0.20.30.70.50.3-0.20.9
Reaction time mean minus median0.10.10.3-0.20.3-0.00.5
Reaction time mean minus median AUC0.30.40.60.40.8-0.50.6
Reaction time num false alarms0.00.00.1-0.2-0.00.1-0.2
Reaction time num false alarms AUC0.20.30.40.50.6-0.60.1
Reaction time trials correct on left0.20.30.70.50.3-0.20.9
Reaction time trials on left0.10.20.60.30.2-0.10.8
Reaction time mean1.11.52.8-1.7-1.41.1-0.4
Reaction time mean AUC1.41.93.5-1.9-1.61.1-0.6
Median of all reaction times2.02.84.5-2.1-2.01.4-0.7
Reaction time omissions1.01.42.5-1.6-1.40.9-0.4
Reaction time false alarm rate0.10.10.4-0.4-0.20.1-0.6
Reaction time premature initiation rate2.53.44.4-2.0-1.82.1-1.3
Reaction time premature initiations1.52.23.4-1.6-1.51.8-0.8
Std. dev. reaction times0.20.30.7-0.8-0.50.50.1
Reaction time trials completed0.10.20.60.30.2-0.10.8
Reaction time trials AUC0.20.20.70.30.2-0.00.9
Run reversals in cocaine runway, females0.20.20.4-0.4-0.20.6-0.6
Run reversals in cocaine runway, males0.10.10.1-0.3-0.20.1-0.4
Latency to leave start box in cocaine runway1.11.21.81.01.0-1.11.3
Latency to leave start box in cocaine runway, F0.20.20.9-0.0-0.0-0.11.0
Latency to leave start box in cocaine runway, M2.62.53.21.51.5-1.81.5
Std. dev. time between licks in bursts0.91.12.7-0.7-0.80.7-1.6
Total sessions with >9 infusions0.30.30.70.90.4-0.70.0
Short access day 1 total inactive lever presses2.93.35.12.31.9-2.10.2
Short access day 10 total inactive lever presses0.30.40.50.60.7-0.7-0.3
Short access day 1 total infusions2.93.15.02.21.6-2.10.3
Short access day 10 total infusions1.21.32.11.40.9-0.91.2
Short access total infusions1.01.12.21.50.9-1.20.2
Short access day 1 locomotion0.30.30.90.1-0.20.31.0
Short access day 10 total locomotion1.31.52.0-1.1-1.11.4-1.2
Short access total locomotion0.40.41.40.40.20.01.2
One hour access (0.3 mA shock)0.50.60.70.80.6-0.9-0.7
Compulsive drug intake0.10.10.10.30.3-0.20.3
One hour access (shock baseline)0.40.50.80.90.6-0.8-0.2
Social response proportion4.14.47.9-1.5-1.72.2-2.8
Social responses0.40.50.80.90.9-0.5-0.1
Social time0.20.31.0-0.1-0.1-0.1-1.0
Soleus weight0.31.03.50.50.3-0.41.9
Bone: stiffness4.47.07.82.72.7-2.82.4
Tibialis anterior weight9.733.337.05.75.5-6.15.8
Time to tail flick, vehicle, before self-admin1.92.02.8-1.7-1.51.5-0.5
Time to tail flick, vehicle, after self-admin0.10.10.50.20.1-0.20.7
Time to tail flick, test, before self-admin0.50.51.30.50.4-0.6-1.1
Time to tail flick, test, after self-admin0.30.30.80.60.40.00.9
Delta time to tail flick, vehicle, before/after SA0.50.50.80.90.8-0.80.1
Delta time to tail flick, test, before/after SA0.40.40.6-0.4-0.30.70.8
Tibia length0.30.92.90.60.5-0.61.7
Ambulatory time before self-admin6.16.37.12.62.4-2.72.4
Ambulatory time after self-admin0.70.81.40.80.7-1.20.6
Bone: tissue strength0.10.10.20.50.4-0.2-0.0
Total heroin consumption0.30.31.0-0.4-0.30.21.0
Bone: trabecular number1.22.03.41.31.3-1.11.8
Bone: trabecular spacing0.20.20.8-0.1-0.10.1-0.9
Bone: trabecular thickness0.20.20.4-0.5-0.40.10.6
Bone: trabecular tissue density2.63.74.82.12.2-2.21.0
Water consumed over 24 hours0.91.11.81.21.1-1.3-0.3
Number of responses in last shaping day1.51.52.71.20.9-1.11.6