Ccdc66

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Ccdc66 0.07 0.05 5.9e-03 0.01 0.01 0.01 0.01 1.0e-02 4.8e-02 2.6e-02 3.1e-02
2 Eye intron excision ratio chr16_2680136_2687161 0.29 0.17 5.7e-03 0.16 0.22 0.18 0.2 2.2e-03 2.4e-04 1.0e-03 5.2e-04
3 Brain gene expression Ccdc66 0.03 0.02 1.3e-03 0.03 0.03 0.02 0.03 1.4e-03 3.9e-04 3.1e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.42.41.51.00.9
Area under the delay curve0.10.10.2-0.00.50.1
BMI with tail1.55.29.73.11.4-2.0
BMI without tail0.92.65.62.40.7-1.3
Body weight0.62.55.12.30.1-1.5
Weight adjusted by age0.40.51.2-1.1-0.60.2
Bone surface0.61.22.61.60.80.5
Bone volume0.81.53.81.90.8-0.1
Breakpoint value in progressive ratio session0.10.10.2-0.5-0.2-0.4
Number of licking bursts0.10.20.30.40.4-0.6
Context. condit. distance diff. score0.10.10.3-0.20.50.0
Locomotion velocity, session 12.52.77.5-2.7-0.2-0.6
Locomotion distance, session 12.02.55.7-2.4-1.0-0.8
Locomotion velocity, session 23.64.18.1-2.9-1.90.7
Locomotion distance, session 21.11.62.6-1.6-1.1-1.0
Locomotion velocity, session 32.02.24.0-2.00.0-1.7
Locomotion distance, session 33.74.18.60.41.8-2.9
Stereotopy head waving bouts, day 30.00.10.2-0.00.4-0.0
Stereotopy head waving duration, day 30.30.41.0-0.20.31.0
Locomotion velocity, session 71.92.15.3-1.00.0-2.3
Locomotion distance, session 70.91.12.9-0.30.5-1.7
Stereotopy head waving bouts, day 70.80.92.01.4-0.40.7
Stereotopy head waving duration, day 70.81.01.41.1-0.51.2
Locomotion velocity, session 84.35.115.1-3.9-0.3-0.5
Locomotion distance, session 81.42.04.7-2.2-0.6-1.0
Degree of sensitization distance1.01.01.6-0.6-1.31.1
Degree of sensitization stereotypy1.11.22.00.9-1.01.4
Conditioned locomotion0.50.51.11.10.6-0.4
Cocaine response after cond. corrected0.20.20.3-0.6-0.10.5
Cocaine response after cond. not corrected0.40.50.7-0.6-0.50.8
Cocaine response before conditioning0.00.10.1-0.4-0.2-0.2
Saline control response1.82.44.62.20.4-1.5
Bone: connectivity density1.52.34.91.30.52.2
Bone: cortical apparent density1.01.42.7-1.61.2-0.3
Bone: cortical area5.48.318.84.31.9-1.6
Bone: cortical porosity0.70.71.50.7-1.2-0.3
Bone: cortical porosity0.60.71.50.6-1.2-0.5
Bone: cortical thickness2.74.510.23.21.4-1.1
Bone: cortical thickness1.92.25.62.41.0-0.2
Bone: cortical tissue density1.31.83.7-1.91.2-0.2
Condit. Reinf. active minus inactive responses1.31.43.00.51.7-1.0
Condit. Reinf. active-inactive response ratio3.73.99.21.53.0-0.6
Condit. Reinf. active responses0.30.30.5-0.20.7-0.7
Condit. Reinf. inactive responses1.41.83.0-1.5-1.7-0.3
Incentive salience index mean0.70.81.50.61.2-0.7
Condit. Reinf. lever presses0.10.10.20.40.1-0.2
Condit. Reinf. active minus inactive responses0.20.30.60.50.3-0.8
Condit. Reinf. active-inactive response ratio0.81.02.71.6-0.3-0.2
Condit. Reinf. active responses0.20.30.70.20.5-0.8
Condit. Reinf. inactive responses0.60.82.3-1.50.0-0.4
Condit. Reinf. lever presses0.70.91.00.91.0-1.0
Condit. Reinf. lever reinforcers received0.50.71.10.50.8-1.1
Conditioned reinforcement - actives0.71.22.50.1-1.61.1
Conditioned reinforcement - inactives0.91.43.41.80.6-0.5
Conditioned locomotion0.10.10.20.4-0.4-0.3
Patch foraging indifference point 0 sec1.12.13.3-0.31.8-1.7
Patch foraging indifference point AUC0.20.20.60.0-0.30.8
Delay disc. indifference point, 0s delay0.30.30.50.7-0.50.4
Delay disc. indifference point, 16s delay0.30.40.5-0.70.2-0.7
Delay disc. indifference point, 2s delay0.60.61.6-0.61.3-0.1
Delay disc. indifference point, 24s delay0.80.92.7-1.60.00.1
Delay disc. indifference point, 4s delay0.60.61.40.51.20.4
Delay disc. indifference point, 8s delay0.20.30.50.3-0.50.7
Indifference point function ln k0.91.73.30.71.1-1.8
Indifference point function log k0.91.73.30.71.1-1.8
Patch foraging total patch changes 0 sec1.12.13.3-0.31.8-1.7
Patch foraging total patch changes 12 sec0.30.41.1-1.1-0.0-0.5
Patch foraging total patch changes 18 sec0.60.91.7-0.01.3-1.0
Patch foraging total patch changes 24 sec0.10.20.40.30.60.4
Patch foraging total patch changes 6 sec0.30.51.4-0.01.2-0.3
Patch foraging time to switch 0 sec1.42.84.6-1.4-1.42.1
Patch foraging water rate 0 sec1.73.64.32.02.1-1.6
Patch foraging water rate 12 sec1.22.54.70.52.2-1.6
Patch foraging water rate 18 sec0.20.40.70.90.7-0.0
Patch foraging water rate 24 sec1.82.53.92.01.7-0.8
Patch foraging water rate 6 sec2.02.94.21.52.1-1.5
Seeking ratio, delayed vs. immediate footshock0.70.91.11.0-1.10.7
Distance traveled before self-admin1.01.32.4-0.21.6-1.3
Distance traveled after self-admin1.51.83.10.81.8-1.3
Extensor digitorum longus weight1.35.28.9-0.63.0-2.5
Bone: elastic displacement0.60.71.2-1.10.2-0.9
Bone: elastic work0.81.13.11.8-0.4-0.1
Bone: endosteal estimation2.65.716.84.10.2-0.6
Bone: endosteal perimeter1.53.18.02.80.9-0.7
Epididymis fat weight0.31.23.00.6-1.70.3
Delta time in closed arm before/after self-admin0.00.00.0-0.1-0.10.1
Delta time in open arm before/after self-admin0.10.10.20.50.2-0.3
Diff in mean of infusions in LGA sessions3.84.67.0-2.6-2.60.5
Delay discount exponential model param0.10.10.20.0-0.5-0.3
Extinction: sum of active levers before priming0.70.81.2-0.41.0-1.1
Active lever presses in extinction session 60.10.10.2-0.3-0.2-0.5
Bone: final force3.75.817.14.10.4-0.5
Bone: final moment3.45.516.34.00.1-0.5
Food consumed during 24 hour testing period1.52.13.5-0.91.4-1.9
Glucose0.30.51.10.3-1.10.6
Heart weight1.11.73.50.01.9-1.2
Delay discount hyperbolic model param0.10.10.30.0-0.6-0.1
Intermittent access intake day 1-15 change2.14.36.4-0.6-2.52.5
Intermittent access intake escalation2.14.36.6-0.5-2.62.4
Intermittent access intake escalation 20.91.01.50.0-1.21.2
Intermitt. access day 1 inactive lever presses0.00.10.2-0.20.4-0.2
Intermitt. access day 15 inactive lever presses0.40.81.5-1.2-0.40.9
Intermitt. access escalation Index0.81.12.91.70.7-0.2
Intermittent access day 1 total infusions0.81.23.50.20.4-1.9
Intermittent access day 15 total infusions0.50.71.9-0.5-1.4-0.2
Intermittent access terminal intake (last 3 days)0.81.13.00.1-1.7-0.5
Intermittent access total infusions0.70.81.80.2-0.8-1.3
Intermittent access day 1 locomotion1.11.44.2-0.1-0.0-2.1
Intermittent access day 15 total locomotion0.10.20.60.10.1-0.8
Intermittent access total locomotion0.50.61.8-0.2-0.3-1.3
Intermittent access standard deviation0.20.30.80.5-0.0-0.9
Left kidney weight0.21.01.91.4-1.0-0.0
Right kidney weight0.94.110.93.30.2-1.2
Cocaine induced anxiety0.81.22.80.7-1.70.4
Post-drug Anxiety0.80.91.41.0-1.20.3
Baseline Anxiety0.30.30.6-0.60.8-0.2
Tail length0.10.51.4-0.3-1.2-0.4
Length with tail0.41.54.6-0.0-2.10.1
Length without tail0.30.81.61.3-0.7-0.7
Times rat made contact with spout3.03.57.2-0.21.8-2.7
Lifetime Intake0.60.81.80.3-0.6-1.3
Liver weight, left2.33.85.02.21.3-2.2
Liver weight, right1.01.72.81.40.5-1.7
Locomotor activity0.81.31.81.20.8-1.3
Locomotor testing distance0.50.92.41.60.4-0.1
Locomotor testing rearing0.30.71.61.30.6-0.3
Locomotion in novel chamber0.20.20.5-0.70.30.1
Locomotion in novel chamber post-restriction0.50.81.60.30.81.3
Fecal boli incidents, locomotor time 10.60.81.40.60.8-1.2
Change in fecal boli incidents, locomotor task0.10.10.20.5-0.1-0.4
Time >=10cm from walls, locomotor time 10.10.10.10.2-0.30.2
Bouts of movement, locomotor time 11.41.63.60.9-1.90.6
Total resting periods, locomotor time 11.01.12.80.4-1.70.7
Rest time, locomotor task time 11.31.62.31.4-1.50.6
Distance moved, locomotor task time 10.10.20.30.0-0.60.5
Vertical activity count, locomotor time 10.10.20.40.6-0.1-0.2
Time >=10cm from walls, locomotor time 20.20.30.50.70.6-0.1
Bouts of movement, locomotor time 20.60.91.9-0.2-0.91.4
Total resting periods, locomotor time 20.50.81.70.3-0.81.3
Rest time, locomotor task time 21.31.62.61.6-0.81.2
Distance moved, locomotor task time 20.20.30.60.2-0.80.4
Vertical activity count, locomotor time 20.81.11.91.10.5-1.4
Light reinforcement 11.02.44.3-0.9-2.11.5
Light reinforcement 20.60.92.1-0.5-1.40.7
Bone: marrow area2.55.415.84.00.2-0.6
Bone: maximum diameter2.95.37.52.62.7-1.4
Bone: maximum force4.88.425.25.0-0.2-0.2
Bone: maximum moment4.57.923.44.8-0.5-0.3
Mean time between licks in bursts0.30.61.6-1.3-0.50.2
Mean num. licks in bursts0.50.71.0-0.31.0-1.0
Cd content in liver0.60.72.00.20.21.4
Co content in liver0.30.40.5-0.6-0.50.7
Cu content in liver1.11.42.7-1.60.4-1.1
Fe content in liver0.50.61.2-1.10.2-0.8
K content in liver1.51.43.0-0.9-1.70.6
Mg content in liver1.01.01.7-0.8-0.81.3
Mn content in liver0.70.81.3-1.2-0.11.0
Na content in liver1.01.12.6-0.7-1.60.4
Rb content in liver2.42.84.90.32.2-1.8
Se content in liver0.20.30.4-0.6-0.40.5
Sr content in liver0.50.40.91.00.5-0.1
Zn content in liver0.20.20.5-0.70.1-0.2
Bone: minimum diameter5.39.725.75.10.8-1.7
Time in familiar zone, hab. session 12.72.65.02.21.3-1.1
Time in novel zone, hab. session 10.90.91.4-1.1-1.20.4
Total zone transitions, hab. session 11.01.52.7-1.6-0.8-1.0
Total locomotion distance, hab. session 11.41.92.9-1.7-1.6-0.6
Locomotion velocity, hab. session 11.52.14.7-2.2-1.0-0.8
Time in familiar zone, hab. session 21.41.53.0-0.41.2-1.7
Time in novel zone, hab. session 20.30.30.60.5-0.40.8
Total zone transitions, hab. session 20.81.01.9-1.0-0.1-1.4
Total locomotion distance, hab. session 20.91.12.2-1.5-0.1-1.1
Locomotion velocity, hab. session 20.81.12.4-1.6-0.3-0.9
Novel to familiar place preference ratio0.50.51.10.5-1.00.5
Novelty place preference0.20.20.70.2-0.80.1
Time in novel zone, NPP test0.20.20.50.3-0.70.3
Total zone transitions, NPP test1.01.53.6-1.9-0.1-0.9
Total locomotion distance, NPP test1.52.14.8-2.2-0.3-1.1
Locomotion velocity, NPP test1.72.46.0-2.5-0.6-1.0
Intraocular pressure2.02.87.0-0.02.7-1.2
Delta distance traveled before/after self-admin0.30.30.60.6-0.30.8
Delta ambulatory time before/after self-admin0.10.10.30.1-0.30.5
Parametrial fat weight0.61.33.21.80.10.9
Pavlov. Cond. lever latency0.00.10.10.0-0.30.3
Pavlov. Cond. magazine entry latency0.40.61.10.21.0-0.8
Pavlov. Cond. change in total contacts0.10.10.2-0.4-0.10.2
Pavlov. Cond. index score0.00.00.1-0.10.3-0.2
Pavlov. Cond. latency score0.10.10.20.20.4-0.3
Pavlov. Cond. lever contacts0.10.10.2-0.5-0.10.0
Pavlov. Cond. magazine entry number0.40.50.90.3-0.90.7
Pavlov. Cond. intertrial magazine entries0.70.81.8-0.7-1.30.3
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.3-0.1-0.0
Pavlov. Cond. response bias0.30.30.7-0.80.4-0.4
Pavlov. Cond. lever latency0.81.01.80.2-1.11.4
Pavlov. Cond. magazine entry latency2.12.55.0-1.52.2-0.7
Pavlov. Cond. change in total contacts1.42.34.0-0.12.0-1.7
Pavlov. Cond. index score1.41.93.3-1.01.8-1.1
Pavlov. Cond. latency score2.22.95.0-1.12.2-1.6
Pavlov. Cond. lever contacts0.60.81.3-0.40.9-1.2
Pavlov. Cond. magazine entry number2.02.44.71.4-2.20.8
Pavlov. Cond. intertrial magazine entries2.94.36.72.4-2.60.7
Pavlov. Cond. lever-magazine prob. diff.1.52.03.3-1.21.8-1.0
Pavlov. Cond. response bias0.50.71.0-0.81.0-0.6
Time in closed arm before self-admin0.60.81.7-0.40.71.3
Time in closed arm after self-admin0.80.81.6-0.30.91.3
Time in open arm before self-admin0.50.51.40.0-1.20.5
Time in open arm after self-admin0.30.30.50.3-0.6-0.7
Bone: periosteal estimation5.210.929.05.41.4-1.3
Bone: periosteal perimeter2.84.710.73.31.6-1.0
Bone: post-yield work1.82.77.62.8-0.10.6
Progressive ratio test 1 active lever presses0.91.11.70.2-1.3-1.3
Progressive ratio test 1 breakpoint0.91.11.90.1-1.2-1.4
Progressive ratio test 1 inactive lever presses0.40.50.8-0.1-0.9-0.9
Progressive ratio test 2 active lever presses0.60.71.1-0.4-1.0-1.0
Progressive ratio test 2 breakpoint0.60.71.1-0.3-1.0-1.1
Progressive ratio test 2 inactive lever presses0.10.20.40.6-0.3-0.2
Incentive Sensitization - Responses0.40.61.7-0.20.4-1.3
Incentive Sensitization - Breakpoint0.50.61.8-0.20.3-1.3
Sum of active levers in priming session hrs 5-60.20.20.30.5-0.2-0.4
Progressive ratio0.20.30.60.8-0.3-0.5
Food seeking constrained by brief footshock1.11.32.60.71.6-0.9
Seeking ratio, punishment vs. effort0.20.30.9-0.30.9-0.0
Retroperitoneal fat weight0.73.18.32.90.8-0.7
Reaction time number correct0.10.10.30.2-0.5-0.3
Reaction time mean minus median0.20.40.90.9-0.30.6
Reaction time mean minus median AUC0.51.33.61.9-0.30.3
Reaction time num false alarms0.20.30.7-0.8-0.1-0.5
Reaction time num false alarms AUC0.20.30.8-0.90.10.0
Reaction time trials correct on left0.10.10.30.2-0.5-0.3
Reaction time trials on left0.10.20.30.2-0.6-0.3
Reaction time mean0.60.91.91.4-0.80.2
Reaction time mean AUC0.61.01.41.2-1.20.4
Median of all reaction times0.60.81.51.2-1.00.1
Reaction time omissions0.20.30.50.6-0.70.1
Reaction time false alarm rate0.20.30.6-0.80.20.4
Reaction time premature initiation rate0.40.50.80.90.70.6
Reaction time premature initiations0.30.51.21.10.10.4
Std. dev. reaction times0.50.81.81.3-0.30.8
Reaction time trials completed0.10.20.30.2-0.6-0.3
Reaction time trials AUC0.10.20.30.6-0.4-0.4
Run reversals in cocaine runway, females0.50.50.60.40.8-0.8
Run reversals in cocaine runway, males1.61.63.9-2.00.3-0.9
Latency to leave start box in cocaine runway2.22.54.1-0.3-2.01.8
Latency to leave start box in cocaine runway, F2.83.25.4-0.7-2.31.9
Latency to leave start box in cocaine runway, M0.00.00.10.4-0.00.0
Std. dev. time between licks in bursts1.11.41.9-0.9-1.41.3
Total sessions with >9 infusions0.80.92.10.7-0.4-1.4
Short access day 1 total inactive lever presses0.91.22.00.51.4-1.2
Short access day 10 total inactive lever presses0.40.92.6-1.60.00.3
Short access day 1 total infusions1.11.53.11.00.7-1.7
Short access day 10 total infusions0.50.60.9-0.9-0.5-0.9
Short access total infusions0.81.13.20.2-0.1-1.8
Short access day 1 locomotion2.73.36.80.31.8-2.6
Short access day 10 total locomotion0.81.43.9-0.00.6-2.0
Short access total locomotion0.81.03.0-0.20.2-1.7
One hour access (0.3 mA shock)0.20.30.4-0.5-0.6-0.4
Compulsive drug intake0.10.10.3-0.60.20.3
One hour access (shock baseline)0.20.30.50.3-0.5-0.7
Social response proportion2.02.23.9-0.21.7-2.0
Social responses0.40.61.6-1.20.10.3
Social time0.30.50.8-0.7-0.10.9
Soleus weight1.13.18.73.00.80.0
Bone: stiffness3.76.118.04.2-0.30.4
Tibialis anterior weight0.72.44.32.10.8-1.5
Time to tail flick, vehicle, before self-admin0.30.30.4-0.7-0.5-0.4
Time to tail flick, vehicle, after self-admin1.01.42.4-1.6-0.81.0
Time to tail flick, test, before self-admin0.80.81.60.1-1.30.8
Time to tail flick, test, after self-admin0.91.02.4-0.1-1.60.7
Delta time to tail flick, vehicle, before/after SA0.70.61.3-0.4-0.61.1
Delta time to tail flick, test, before/after SA0.30.30.60.10.4-0.8
Tibia length0.92.43.0-1.5-1.31.7
Ambulatory time before self-admin0.71.12.4-0.01.5-1.0
Ambulatory time after self-admin1.61.83.60.11.9-1.4
Bone: tissue strength0.40.41.01.0-0.3-0.1
Total heroin consumption0.30.30.6-0.5-0.5-0.8
Bone: trabecular number1.22.04.52.10.21.2
Bone: trabecular spacing1.31.74.5-0.8-2.10.1
Bone: trabecular thickness0.30.40.90.60.90.1
Bone: trabecular tissue density0.00.00.00.2-0.20.2
Water consumed over 24 hours1.82.44.90.22.2-1.5
Number of responses in last shaping day0.70.72.1-0.30.1-1.5