Ccdc66

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Ccdc66 0.05 0.04 1.7e-03 0.01 0.01 0.01 0.01 1.7e-02 1.2e-02 1.4e-02 1.1e-02
2 Eye intron excision ratio chr16_2673451_2680476 0.32 0.18 3.6e-03 0.18 0.24 0.07 0.22 9.7e-04 1.2e-04 3.0e-02 2.9e-04
3 Brain gene expression Ccdc66 0.03 0.02 7.2e-04 0.03 0.03 0.02 0.03 6.3e-04 3.6e-04 5.0e-03 2.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.70.90.70.81.0
Area under the delay curve0.10.10.2-0.10.50.0
BMI with tail1.13.56.92.61.0-1.6
BMI without tail1.22.46.72.60.3-0.7
Body weight1.04.211.53.4-0.9-0.5
Weight adjusted by age0.50.61.4-1.2-0.50.4
Bone surface0.30.61.11.00.80.2
Bone volume0.61.02.41.50.7-0.2
Breakpoint value in progressive ratio session0.60.71.4-1.20.4-0.6
Number of licking bursts0.20.20.30.40.4-0.5
Context. condit. distance diff. score0.10.10.2-0.50.40.0
Locomotion velocity, session 11.71.85.2-2.3-0.3-0.4
Locomotion distance, session 10.91.22.2-1.5-1.0-0.6
Locomotion velocity, session 22.32.73.8-2.0-1.90.9
Locomotion distance, session 20.50.71.1-0.6-1.0-0.8
Locomotion velocity, session 31.21.42.2-1.40.0-1.5
Locomotion distance, session 33.53.88.10.21.8-2.9
Stereotopy head waving bouts, day 30.00.10.1-0.20.3-0.0
Stereotopy head waving duration, day 30.50.61.0-0.80.31.0
Locomotion velocity, session 71.41.54.4-0.20.1-2.1
Locomotion distance, session 70.70.92.6-0.00.5-1.6
Stereotopy head waving bouts, day 70.80.81.31.1-0.51.0
Stereotopy head waving duration, day 70.81.01.41.1-0.51.2
Locomotion velocity, session 83.23.811.3-3.4-0.2-0.3
Locomotion distance, session 80.71.01.9-1.4-0.6-0.9
Degree of sensitization distance0.90.91.5-0.2-1.21.1
Degree of sensitization stereotypy1.21.32.01.0-0.91.4
Conditioned locomotion0.30.41.01.00.3-0.0
Cocaine response after cond. corrected0.20.20.3-0.6-0.10.5
Cocaine response after cond. not corrected0.40.50.8-0.6-0.50.9
Cocaine response before conditioning0.00.10.1-0.4-0.2-0.1
Saline control response1.82.33.31.80.8-1.8
Bone: connectivity density1.11.85.10.30.42.3
Bone: cortical apparent density1.82.44.9-2.21.4-0.6
Bone: cortical area4.67.013.13.62.0-2.0
Bone: cortical porosity1.71.92.81.7-1.7-0.1
Bone: cortical porosity1.41.52.71.6-1.3-0.5
Bone: cortical thickness2.03.37.12.71.2-1.1
Bone: cortical thickness1.11.33.31.80.8-0.0
Bone: cortical tissue density2.33.06.5-2.51.4-0.6
Condit. Reinf. active minus inactive responses1.31.53.1-0.31.8-1.1
Condit. Reinf. active-inactive response ratio3.03.39.2-0.23.0-0.8
Condit. Reinf. active responses0.30.40.5-0.40.7-0.7
Condit. Reinf. inactive responses0.81.02.8-0.4-1.7-0.1
Incentive salience index mean0.60.71.50.11.2-0.8
Condit. Reinf. lever presses0.10.10.10.30.3-0.2
Condit. Reinf. active minus inactive responses0.20.30.40.50.3-0.6
Condit. Reinf. active-inactive response ratio1.11.13.31.8-0.2-0.1
Condit. Reinf. active responses0.20.30.50.10.6-0.7
Condit. Reinf. inactive responses0.50.71.9-1.40.0-0.3
Condit. Reinf. lever presses0.81.11.70.51.1-1.3
Condit. Reinf. lever reinforcers received0.30.50.80.20.8-0.9
Conditioned reinforcement - actives1.41.42.60.4-1.61.1
Conditioned reinforcement - inactives1.01.11.71.31.0-0.9
Conditioned locomotion0.30.40.80.5-0.9-0.4
Patch foraging indifference point 0 sec1.62.63.5-0.91.9-1.8
Patch foraging indifference point AUC0.20.20.40.3-0.40.7
Delay disc. indifference point, 0s delay0.30.30.80.9-0.40.1
Delay disc. indifference point, 16s delay0.10.10.3-0.60.1-0.3
Delay disc. indifference point, 2s delay0.70.81.8-0.71.3-0.3
Delay disc. indifference point, 24s delay0.80.82.3-1.50.10.3
Delay disc. indifference point, 4s delay0.50.61.70.21.3-0.1
Delay disc. indifference point, 8s delay0.40.41.00.1-0.61.0
Indifference point function ln k0.81.12.20.61.0-1.5
Indifference point function log k0.81.12.20.61.0-1.5
Patch foraging total patch changes 0 sec1.62.73.7-0.81.9-1.9
Patch foraging total patch changes 12 sec0.30.30.8-0.9-0.0-0.5
Patch foraging total patch changes 18 sec0.91.22.0-0.51.4-1.1
Patch foraging total patch changes 24 sec0.20.20.6-0.20.80.2
Patch foraging total patch changes 6 sec0.60.91.8-0.61.3-0.6
Patch foraging time to switch 0 sec1.72.63.9-1.4-1.32.0
Patch foraging water rate 0 sec1.72.74.31.22.1-1.6
Patch foraging water rate 12 sec1.32.04.2-0.22.0-1.4
Patch foraging water rate 18 sec0.10.20.40.30.60.1
Patch foraging water rate 24 sec1.01.52.51.11.6-0.8
Patch foraging water rate 6 sec1.42.03.50.81.9-1.3
Seeking ratio, delayed vs. immediate footshock1.11.21.81.4-1.20.7
Distance traveled before self-admin2.12.33.6-0.51.9-1.7
Distance traveled after self-admin0.80.91.40.01.2-1.1
Extensor digitorum longus weight1.66.28.8-1.73.0-2.6
Bone: elastic displacement0.40.50.9-1.00.1-0.7
Bone: elastic work1.11.44.12.0-0.5-0.0
Bone: endosteal estimation2.76.016.44.10.5-1.1
Bone: endosteal perimeter1.53.16.12.51.3-1.3
Epididymis fat weight0.81.82.31.5-1.51.0
Delta time in closed arm before/after self-admin0.00.00.10.2-0.20.1
Delta time in open arm before/after self-admin0.20.20.30.30.3-0.6
Diff in mean of infusions in LGA sessions3.13.46.9-1.6-2.60.9
Delay discount exponential model param0.10.10.20.1-0.5-0.1
Extinction: sum of active levers before priming1.31.31.5-1.21.0-1.2
Active lever presses in extinction session 60.30.30.7-0.80.1-0.3
Bone: final force3.35.415.43.90.5-0.7
Bone: final moment3.65.917.14.10.2-0.8
Food consumed during 24 hour testing period1.92.33.5-1.21.4-1.9
Glucose0.81.12.40.9-1.50.5
Heart weight1.21.83.2-1.01.8-1.1
Delay discount hyperbolic model param0.10.10.40.1-0.6-0.1
Intermittent access intake day 1-15 change3.03.04.50.1-2.12.1
Intermittent access intake escalation3.53.45.3-0.1-2.32.2
Intermittent access intake escalation 20.60.60.90.3-0.90.9
Intermitt. access day 1 inactive lever presses0.30.30.8-0.10.9-0.1
Intermitt. access day 15 inactive lever presses0.70.71.1-1.0-0.50.9
Intermitt. access escalation Index0.40.30.80.90.4-0.0
Intermittent access day 1 total infusions0.60.72.00.10.2-1.4
Intermittent access day 15 total infusions0.91.02.8-0.3-1.70.3
Intermittent access terminal intake (last 3 days)1.21.33.40.7-1.8-0.2
Intermittent access total infusions0.60.71.60.5-1.3-0.4
Intermittent access day 1 locomotion1.51.54.60.10.1-2.1
Intermittent access day 15 total locomotion0.20.20.50.1-0.3-0.7
Intermittent access total locomotion0.40.50.90.2-0.7-1.0
Intermittent access standard deviation0.70.71.61.3-0.70.1
Left kidney weight0.51.42.41.5-1.20.6
Right kidney weight1.02.76.52.6-1.0-0.7
Cocaine induced anxiety0.80.91.41.2-1.1-0.3
Post-drug Anxiety0.10.20.20.4-0.3-0.5
Baseline Anxiety0.20.20.4-0.60.5-0.3
Tail length0.20.71.31.1-0.90.1
Length with tail0.62.14.41.3-2.10.5
Length without tail0.81.63.31.3-1.8-0.1
Times rat made contact with spout3.33.87.8-0.31.9-2.8
Lifetime Intake0.70.71.60.5-1.3-0.6
Liver weight, left0.61.02.01.40.0-1.0
Liver weight, right0.61.01.61.2-0.3-1.3
Locomotor activity0.91.41.91.40.8-1.3
Locomotor testing distance0.50.92.31.50.6-0.2
Locomotor testing rearing0.30.51.11.10.6-0.3
Locomotion in novel chamber0.20.20.6-0.8-0.2-0.2
Locomotion in novel chamber post-restriction0.50.60.9-0.31.00.9
Fecal boli incidents, locomotor time 10.50.50.90.40.6-1.0
Change in fecal boli incidents, locomotor task0.30.20.60.8-0.2-0.3
Time >=10cm from walls, locomotor time 10.00.00.00.1-0.20.1
Bouts of movement, locomotor time 11.92.13.31.6-1.80.7
Total resting periods, locomotor time 11.41.62.71.1-1.60.9
Rest time, locomotor task time 11.41.62.51.6-1.20.8
Distance moved, locomotor task time 10.20.20.30.3-0.50.4
Vertical activity count, locomotor time 10.20.20.50.7-0.1-0.4
Time >=10cm from walls, locomotor time 20.40.40.90.50.9-0.4
Bouts of movement, locomotor time 20.50.51.0-0.2-0.71.0
Total resting periods, locomotor time 20.40.50.90.3-0.60.9
Rest time, locomotor task time 21.61.83.11.8-0.91.3
Distance moved, locomotor task time 20.30.30.50.5-0.70.4
Vertical activity count, locomotor time 21.11.22.50.80.6-1.6
Light reinforcement 11.22.34.2-0.2-2.11.6
Light reinforcement 20.70.92.1-0.0-1.40.8
Bone: marrow area2.65.615.53.90.5-1.1
Bone: maximum diameter2.64.78.81.33.0-1.9
Bone: maximum force5.29.026.75.2-0.0-0.7
Bone: maximum moment5.49.427.55.2-0.3-0.7
Mean time between licks in bursts0.20.30.4-0.6-0.60.2
Mean num. licks in bursts0.70.81.2-0.61.0-1.1
Cd content in liver0.60.71.1-1.01.00.1
Co content in liver0.20.30.8-0.10.1-0.9
Cu content in liver0.80.92.1-0.70.3-1.5
Fe content in liver0.10.10.4-0.60.2-0.0
K content in liver0.40.41.2-0.2-1.10.1
Mg content in liver0.10.10.3-0.5-0.30.1
Mn content in liver0.70.82.1-1.50.00.6
Na content in liver1.81.94.2-0.0-2.01.2
Rb content in liver2.83.55.7-0.22.4-2.2
Se content in liver1.11.32.5-0.9-0.71.6
Sr content in liver0.20.20.20.50.5-0.2
Zn content in liver0.30.40.6-0.7-0.2-0.8
Bone: minimum diameter5.310.024.85.00.9-2.1
Time in familiar zone, hab. session 12.32.13.41.81.2-1.2
Time in novel zone, hab. session 10.70.61.4-0.5-1.20.5
Total zone transitions, hab. session 10.50.70.8-0.9-0.7-0.9
Total locomotion distance, hab. session 10.70.92.4-0.6-1.5-0.4
Locomotion velocity, hab. session 10.71.01.7-1.3-0.9-0.6
Time in familiar zone, hab. session 21.51.63.0-0.51.2-1.7
Time in novel zone, hab. session 20.30.30.60.4-0.40.7
Total zone transitions, hab. session 20.40.61.5-0.5-0.1-1.2
Total locomotion distance, hab. session 20.50.71.1-1.0-0.1-1.0
Locomotion velocity, hab. session 20.50.61.2-1.1-0.2-0.8
Novel to familiar place preference ratio0.70.71.00.9-1.00.5
Novelty place preference0.30.30.60.6-0.80.1
Time in novel zone, NPP test0.30.30.40.6-0.70.3
Total zone transitions, NPP test0.60.92.1-1.4-0.1-0.8
Total locomotion distance, NPP test0.91.22.7-1.6-0.2-1.0
Locomotion velocity, NPP test1.01.33.1-1.8-0.5-0.8
Intraocular pressure2.63.67.1-1.42.7-1.3
Delta distance traveled before/after self-admin0.80.81.50.1-1.01.2
Delta ambulatory time before/after self-admin0.50.60.9-0.1-0.90.9
Parametrial fat weight0.61.12.41.60.11.0
Pavlov. Cond. lever latency0.10.10.2-0.1-0.30.4
Pavlov. Cond. magazine entry latency0.30.40.9-0.10.9-0.6
Pavlov. Cond. change in total contacts0.10.10.1-0.3-0.00.2
Pavlov. Cond. index score0.00.00.1-0.10.2-0.2
Pavlov. Cond. latency score0.10.10.20.10.4-0.3
Pavlov. Cond. lever contacts0.10.10.3-0.5-0.10.1
Pavlov. Cond. magazine entry number0.60.71.00.7-1.00.7
Pavlov. Cond. intertrial magazine entries0.50.61.7-0.1-1.30.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.2-0.10.1
Pavlov. Cond. response bias0.30.40.9-1.00.4-0.4
Pavlov. Cond. lever latency1.01.42.50.5-1.21.6
Pavlov. Cond. magazine entry latency3.64.16.7-2.62.2-0.9
Pavlov. Cond. change in total contacts2.02.84.2-1.02.0-1.8
Pavlov. Cond. index score2.33.03.7-1.91.9-1.2
Pavlov. Cond. latency score3.24.05.3-2.02.3-1.7
Pavlov. Cond. lever contacts0.81.11.6-0.71.1-1.3
Pavlov. Cond. magazine entry number3.44.25.72.4-2.41.2
Pavlov. Cond. intertrial magazine entries5.47.113.53.7-2.70.8
Pavlov. Cond. lever-magazine prob. diff.2.63.34.4-2.12.0-1.2
Pavlov. Cond. response bias0.91.31.9-1.41.1-0.8
Time in closed arm before self-admin0.80.91.8-0.80.71.3
Time in closed arm after self-admin0.80.81.5-0.40.91.2
Time in open arm before self-admin0.70.81.70.4-1.30.7
Time in open arm after self-admin0.40.50.60.6-0.8-0.7
Bone: periosteal estimation4.69.522.84.81.6-1.8
Bone: periosteal perimeter2.54.16.62.61.9-1.5
Bone: post-yield work1.82.47.22.70.10.2
Progressive ratio test 1 active lever presses1.81.92.51.6-1.5-1.0
Progressive ratio test 1 breakpoint2.32.43.21.8-1.6-1.2
Progressive ratio test 1 inactive lever presses0.40.40.60.7-0.8-0.5
Progressive ratio test 2 active lever presses0.60.61.40.3-1.2-0.6
Progressive ratio test 2 breakpoint0.60.71.10.5-1.1-0.8
Progressive ratio test 2 inactive lever presses0.20.20.50.4-0.70.1
Incentive Sensitization - Responses0.40.41.30.00.1-1.1
Incentive Sensitization - Breakpoint0.50.51.50.10.0-1.2
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.2-0.2
Progressive ratio0.30.30.70.8-0.3-0.3
Food seeking constrained by brief footshock0.91.12.70.21.6-0.8
Seeking ratio, punishment vs. effort0.40.50.9-0.80.9-0.0
Retroperitoneal fat weight0.82.77.92.80.4-0.1
Reaction time number correct0.20.30.50.7-0.6-0.2
Reaction time mean minus median0.20.30.50.7-0.20.6
Reaction time mean minus median AUC0.81.13.11.8-0.30.3
Reaction time num false alarms0.10.20.3-0.5-0.1-0.5
Reaction time num false alarms AUC0.20.20.7-0.80.2-0.2
Reaction time trials correct on left0.20.30.50.7-0.6-0.2
Reaction time trials on left0.20.40.60.8-0.7-0.2
Reaction time mean0.71.02.51.6-0.70.2
Reaction time mean AUC1.01.32.61.6-1.10.4
Median of all reaction times0.81.02.41.6-0.80.1
Reaction time omissions0.20.30.80.9-0.1-0.2
Reaction time false alarm rate0.20.30.8-0.90.30.2
Reaction time premature initiation rate0.20.30.60.00.80.4
Reaction time premature initiations0.10.20.40.70.20.3
Std. dev. reaction times0.50.71.41.2-0.30.7
Reaction time trials completed0.20.40.60.8-0.7-0.2
Reaction time trials AUC0.30.41.01.0-0.5-0.3
Run reversals in cocaine runway, females0.60.60.8-0.60.9-0.8
Run reversals in cocaine runway, males1.71.64.0-2.00.4-0.8
Latency to leave start box in cocaine runway1.92.13.40.2-1.91.7
Latency to leave start box in cocaine runway, F1.31.42.50.2-1.61.3
Latency to leave start box in cocaine runway, M0.20.20.40.40.6-0.4
Std. dev. time between licks in bursts1.11.31.9-0.4-1.31.4
Total sessions with >9 infusions1.31.41.91.1-1.0-1.4
Short access day 1 total inactive lever presses1.01.12.10.31.5-1.1
Short access day 10 total inactive lever presses0.70.82.3-1.50.20.2
Short access day 1 total infusions1.81.92.91.60.5-1.7
Short access day 10 total infusions0.60.61.7-0.4-1.30.0
Short access total infusions0.80.91.20.9-1.1-0.9
Short access day 1 locomotion2.62.86.70.71.1-2.6
Short access day 10 total locomotion1.21.43.20.9-0.0-1.8
Short access total locomotion0.50.51.00.3-0.6-1.0
One hour access (0.3 mA shock)0.40.40.7-0.9-0.7-0.0
Compulsive drug intake0.70.71.2-1.10.70.6
One hour access (shock baseline)0.40.41.20.2-1.1-0.1
Social response proportion2.12.33.9-0.31.7-2.0
Social responses0.50.71.9-1.40.30.2
Social time0.20.20.4-0.60.10.6
Soleus weight0.72.05.12.30.9-0.2
Bone: stiffness3.86.018.14.3-0.10.0
Tibialis anterior weight0.62.23.61.90.7-1.6
Time to tail flick, vehicle, before self-admin0.20.20.4-0.2-0.6-0.3
Time to tail flick, vehicle, after self-admin1.61.72.7-1.6-0.91.3
Time to tail flick, test, before self-admin0.30.30.5-0.1-0.70.5
Time to tail flick, test, after self-admin1.11.12.30.0-1.51.0
Delta time to tail flick, vehicle, before/after SA0.70.71.0-0.8-0.71.0
Delta time to tail flick, test, before/after SA0.10.10.20.20.3-0.4
Tibia length0.61.82.7-1.1-1.21.6
Ambulatory time before self-admin1.81.93.7-0.41.9-1.3
Ambulatory time after self-admin1.41.52.3-0.71.5-1.3
Bone: tissue strength0.60.61.61.3-0.30.0
Total heroin consumption0.20.20.4-0.2-0.6-0.6
Bone: trabecular number1.11.72.71.6-0.11.5
Bone: trabecular spacing1.11.54.20.4-2.00.0
Bone: trabecular thickness0.30.30.90.10.90.2
Bone: trabecular tissue density0.00.00.10.20.00.0
Water consumed over 24 hours2.22.64.9-0.92.2-1.5
Number of responses in last shaping day0.90.92.10.7-0.3-1.5