Ccdc144b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Ccdc144b 0.04 0.05 5.7e-04 0.01 0.01 0.01 0.01 5.7e-03 2.2e-03 4.3e-03 3.8e-03
2 NAcc alternative TSS XM_039103619.2 0.04 0.03 3.0e-05 0.01 0.02 0.02 0.02 3.9e-03 2.2e-04 2.2e-04 6.4e-04
3 pVTA alternative TSS XM_039103619.2 0.04 0.03 2.3e-03 0.01 0.03 0.01 0.01 5.8e-02 4.2e-03 2.2e-02 4.3e-02
4 BLA alternative polyA XM_063282872.1 0.08 0.06 1.7e-03 0.01 0.04 0.03 0.02 8.7e-02 4.4e-03 7.4e-03 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.3-0.50.6-0.2-0.5
Area under the delay curve0.91.02.0-1.41.40.2-0.3
BMI with tail4.214.616.9-4.13.84.13.3
BMI without tail2.06.28.8-3.02.82.31.6
Body weight4.017.723.3-4.84.14.33.5
Weight adjusted by age0.10.20.40.4-0.6-0.5-0.3
Bone surface0.50.81.2-0.80.61.11.0
Bone volume0.10.10.2-0.50.30.30.2
Breakpoint value in progressive ratio session1.21.41.8-1.21.11.31.2
Number of licking bursts2.33.75.1-2.31.92.01.5
Context. condit. distance diff. score0.91.12.8-0.30.4-1.2-1.7
Locomotion velocity, session 11.21.33.2-0.2-0.21.41.8
Locomotion distance, session 12.32.95.5-1.00.62.12.4
Locomotion velocity, session 21.72.04.5-0.50.01.82.1
Locomotion distance, session 21.11.63.6-0.5-0.11.51.9
Locomotion velocity, session 30.00.00.00.2-0.10.10.2
Locomotion distance, session 30.00.10.1-0.0-0.20.20.3
Stereotopy head waving bouts, day 30.50.61.00.6-0.90.51.0
Stereotopy head waving duration, day 30.00.00.10.2-0.00.20.2
Locomotion velocity, session 70.50.61.4-0.1-0.30.91.2
Locomotion distance, session 70.81.11.61.0-1.3-1.1-0.8
Stereotopy head waving bouts, day 70.91.01.5-0.90.61.21.2
Stereotopy head waving duration, day 70.70.81.2-0.70.51.11.1
Locomotion velocity, session 80.91.12.1-1.41.50.60.2
Locomotion distance, session 80.50.81.6-1.31.00.60.3
Degree of sensitization distance1.41.41.81.1-1.1-1.4-1.2
Degree of sensitization stereotypy0.80.80.9-1.01.01.00.8
Conditioned locomotion2.52.93.71.6-1.5-1.9-1.7
Cocaine response after cond. corrected1.01.32.90.5-0.1-1.4-1.7
Cocaine response after cond. not corrected0.70.81.00.9-0.5-1.0-1.0
Cocaine response before conditioning1.01.22.80.4-0.51.21.7
Saline control response1.01.32.9-0.50.11.41.7
Bone: connectivity density1.21.92.3-1.41.31.51.3
Bone: cortical apparent density0.60.81.60.9-1.3-0.7-0.4
Bone: cortical area0.81.21.5-1.11.01.21.0
Bone: cortical porosity0.30.40.60.20.8-0.4-0.8
Bone: cortical porosity0.30.30.80.00.9-0.3-0.7
Bone: cortical thickness0.10.10.20.40.0-0.4-0.5
Bone: cortical thickness0.40.40.6-0.60.50.80.7
Bone: cortical tissue density0.50.71.60.9-1.3-0.7-0.3
Condit. Reinf. active minus inactive responses0.91.01.4-0.90.81.21.0
Condit. Reinf. active-inactive response ratio0.60.61.2-0.91.10.60.2
Condit. Reinf. active responses3.44.25.8-1.81.62.42.2
Condit. Reinf. inactive responses4.25.18.8-1.61.12.83.0
Incentive salience index mean0.91.11.5-0.90.71.21.2
Condit. Reinf. lever presses0.91.22.6-0.50.21.41.6
Condit. Reinf. active minus inactive responses0.70.91.6-0.50.61.21.3
Condit. Reinf. active-inactive response ratio0.20.30.60.20.1-0.6-0.8
Condit. Reinf. active responses2.53.56.6-1.00.82.42.6
Condit. Reinf. inactive responses6.48.314.5-1.91.43.63.8
Condit. Reinf. lever presses1.62.22.8-1.71.61.51.0
Condit. Reinf. lever reinforcers received2.43.35.9-1.10.92.32.4
Conditioned reinforcement - actives0.50.91.51.2-1.20.30.8
Conditioned reinforcement - inactives0.71.02.21.5-1.1-0.7-0.5
Conditioned locomotion0.81.02.4-0.4-0.11.21.6
Patch foraging indifference point 0 sec2.24.17.0-2.72.51.50.8
Patch foraging indifference point AUC0.20.20.60.0-0.30.50.8
Delay disc. indifference point, 0s delay0.40.40.90.7-1.0-0.00.5
Delay disc. indifference point, 16s delay0.70.81.7-1.31.10.3-0.0
Delay disc. indifference point, 2s delay0.70.81.5-1.21.20.3-0.1
Delay disc. indifference point, 24s delay0.30.40.9-0.20.2-0.7-0.9
Delay disc. indifference point, 4s delay1.11.11.8-1.31.30.80.5
Delay disc. indifference point, 8s delay0.40.51.0-0.50.6-0.6-1.0
Indifference point function ln k0.40.81.4-0.51.0-0.6-1.2
Indifference point function log k0.40.81.4-0.51.0-0.6-1.2
Patch foraging total patch changes 0 sec1.73.35.4-2.32.31.40.8
Patch foraging total patch changes 12 sec0.10.10.20.0-0.3-0.4-0.3
Patch foraging total patch changes 18 sec0.71.01.3-1.11.01.10.9
Patch foraging total patch changes 24 sec2.34.05.8-2.42.21.91.4
Patch foraging total patch changes 6 sec0.91.42.2-1.51.41.00.7
Patch foraging time to switch 0 sec0.51.01.21.0-1.0-1.1-0.9
Patch foraging water rate 0 sec0.00.00.0-0.10.1-0.0-0.1
Patch foraging water rate 12 sec0.10.20.40.0-0.10.50.7
Patch foraging water rate 18 sec0.40.60.9-0.50.40.91.0
Patch foraging water rate 24 sec0.40.50.9-0.70.20.91.0
Patch foraging water rate 6 sec0.00.10.1-0.00.10.30.3
Seeking ratio, delayed vs. immediate footshock2.63.24.2-2.02.01.71.2
Distance traveled before self-admin1.31.73.2-1.81.31.10.8
Distance traveled after self-admin3.64.56.1-2.51.92.21.9
Extensor digitorum longus weight4.517.722.2-4.74.64.23.1
Bone: elastic displacement1.82.15.30.10.9-1.6-2.3
Bone: elastic work2.63.36.41.2-0.5-2.3-2.5
Bone: endosteal estimation2.45.47.0-2.41.82.62.4
Bone: endosteal perimeter1.12.44.1-1.20.71.92.0
Epididymis fat weight2.27.59.9-3.23.02.72.0
Delta time in closed arm before/after self-admin0.30.30.5-0.70.50.50.4
Delta time in open arm before/after self-admin0.90.91.50.7-0.3-1.2-1.2
Diff in mean of infusions in LGA sessions0.60.71.4-1.11.20.40.0
Delay discount exponential model param0.91.02.11.3-1.5-0.10.4
Extinction: sum of active levers before priming0.10.10.3-0.1-0.20.40.6
Active lever presses in extinction session 60.10.00.2-0.20.40.1-0.1
Bone: final force1.82.83.5-1.71.61.91.6
Bone: final moment1.82.83.3-1.81.71.81.4
Food consumed during 24 hour testing period0.81.01.9-1.41.10.90.6
Glucose0.20.30.60.6-0.8-0.20.1
Heart weight2.53.85.4-2.12.31.91.3
Delay discount hyperbolic model param0.91.02.21.3-1.5-0.20.4
Intermittent access intake day 1-15 change1.02.13.81.9-1.5-1.2-0.9
Intermittent access intake escalation0.81.63.11.7-1.4-1.0-0.7
Intermittent access intake escalation 20.30.40.70.8-0.6-0.5-0.4
Intermitt. access day 1 inactive lever presses0.10.40.80.9-0.6-0.5-0.4
Intermitt. access day 15 inactive lever presses0.61.23.01.7-1.0-0.7-0.4
Intermitt. access escalation Index0.20.30.40.7-0.3-0.6-0.6
Intermittent access day 1 total infusions1.62.55.62.0-2.4-0.30.7
Intermittent access day 15 total infusions2.23.36.32.5-2.5-0.60.3
Intermittent access terminal intake (last 3 days)2.93.97.62.7-2.7-0.80.2
Intermittent access total infusions1.92.24.11.6-2.00.41.4
Intermittent access day 1 locomotion0.81.02.30.3-0.90.91.5
Intermittent access day 15 total locomotion0.61.22.2-0.80.31.31.5
Intermittent access total locomotion1.21.53.3-0.7-0.11.41.8
Intermittent access standard deviation0.20.51.01.0-0.5-0.6-0.5
Left kidney weight0.41.73.4-1.91.70.60.0
Right kidney weight1.15.19.6-2.83.11.60.6
Cocaine induced anxiety1.82.54.3-2.11.81.30.8
Post-drug Anxiety1.01.11.9-1.11.40.90.5
Baseline Anxiety1.51.72.91.7-1.2-1.2-1.0
Tail length0.10.20.5-0.70.50.1-0.2
Length with tail0.62.84.4-2.11.71.61.2
Length without tail2.58.010.7-3.32.82.92.3
Times rat made contact with spout0.20.20.3-0.50.20.40.4
Lifetime Intake1.92.34.31.8-2.10.31.3
Liver weight, left0.10.20.40.3-0.60.20.5
Liver weight, right0.20.40.70.8-0.6-0.6-0.5
Locomotor activity0.20.41.11.0-0.6-0.3-0.2
Locomotor testing distance1.52.74.5-0.91.22.12.0
Locomotor testing rearing0.00.10.30.6-0.2-0.00.0
Locomotion in novel chamber1.62.12.8-1.71.31.51.2
Locomotion in novel chamber post-restriction0.00.00.00.10.10.10.1
Fecal boli incidents, locomotor time 11.31.92.31.5-1.3-1.4-1.2
Change in fecal boli incidents, locomotor task1.61.62.0-1.30.91.41.4
Time >=10cm from walls, locomotor time 10.10.10.30.3-0.60.00.3
Bouts of movement, locomotor time 10.80.91.11.1-0.8-1.0-0.9
Total resting periods, locomotor time 11.92.22.71.5-1.1-1.7-1.6
Rest time, locomotor task time 11.11.41.71.3-1.0-1.3-1.1
Distance moved, locomotor task time 11.92.83.3-1.81.41.81.6
Vertical activity count, locomotor time 11.43.34.6-2.11.81.81.4
Time >=10cm from walls, locomotor time 20.30.40.70.8-0.8-0.5-0.2
Bouts of movement, locomotor time 22.03.24.62.1-1.4-1.8-1.7
Total resting periods, locomotor time 21.42.53.41.9-1.2-1.6-1.6
Rest time, locomotor task time 20.20.20.40.3-0.1-0.5-0.6
Distance moved, locomotor task time 21.31.52.1-1.20.71.41.5
Vertical activity count, locomotor time 21.11.52.9-1.00.31.41.7
Light reinforcement 10.51.21.91.4-1.2-1.0-0.6
Light reinforcement 20.30.50.80.8-0.9-0.7-0.4
Bone: marrow area2.65.77.2-2.51.92.72.4
Bone: maximum diameter1.12.02.9-1.31.01.71.6
Bone: maximum force0.51.01.2-1.00.81.11.0
Bone: maximum moment0.50.91.3-1.11.01.00.7
Mean time between licks in bursts0.00.10.10.1-0.3-0.4-0.4
Mean num. licks in bursts1.32.02.71.6-1.4-1.5-1.2
Cd content in liver1.01.12.01.4-1.4-0.6-0.2
Co content in liver1.01.11.6-1.21.21.00.7
Cu content in liver0.20.30.3-0.60.30.60.6
Fe content in liver0.50.60.70.7-0.6-0.8-0.8
K content in liver0.90.81.40.5-0.7-1.2-1.1
Mg content in liver0.60.61.30.1-0.1-1.0-1.2
Mn content in liver2.02.22.91.5-1.2-1.7-1.5
Na content in liver0.70.81.4-0.70.21.01.2
Rb content in liver0.30.40.9-0.61.0-0.1-0.5
Se content in liver2.32.74.12.0-2.0-1.4-0.8
Sr content in liver0.30.30.40.6-0.60.20.5
Zn content in liver0.10.10.4-0.60.30.30.2
Bone: minimum diameter2.03.64.3-2.01.82.11.7
Time in familiar zone, hab. session 10.10.10.20.1-0.40.20.4
Time in novel zone, hab. session 10.00.00.10.3-0.1-0.00.0
Total zone transitions, hab. session 11.31.92.7-1.41.61.41.0
Total locomotion distance, hab. session 10.91.31.9-0.81.01.41.3
Locomotion velocity, hab. session 11.01.41.7-1.01.21.31.1
Time in familiar zone, hab. session 23.73.95.72.4-2.0-1.9-1.5
Time in novel zone, hab. session 23.33.34.8-2.22.01.71.2
Total zone transitions, hab. session 22.93.75.3-1.71.42.32.2
Total locomotion distance, hab. session 21.62.13.2-1.11.01.81.8
Locomotion velocity, hab. session 22.02.74.5-1.10.92.12.1
Novel to familiar place preference ratio0.91.01.8-0.61.1-0.7-1.3
Novelty place preference1.11.22.3-0.51.2-0.8-1.5
Time in novel zone, NPP test1.21.32.3-0.91.5-0.6-1.4
Total zone transitions, NPP test1.01.53.7-0.1-0.31.51.9
Total locomotion distance, NPP test0.81.12.60.2-0.41.21.6
Locomotion velocity, NPP test0.71.02.10.6-0.80.91.4
Intraocular pressure0.71.11.81.3-1.0-1.0-0.7
Delta distance traveled before/after self-admin0.30.30.5-0.50.40.70.6
Delta ambulatory time before/after self-admin0.30.40.5-0.60.50.70.6
Parametrial fat weight0.61.42.1-0.90.71.41.4
Pavlov. Cond. lever latency0.81.02.20.40.0-1.3-1.5
Pavlov. Cond. magazine entry latency2.43.14.0-1.81.32.01.8
Pavlov. Cond. change in total contacts0.60.61.2-0.50.11.01.1
Pavlov. Cond. index score2.53.15.1-1.40.82.22.3
Pavlov. Cond. latency score2.02.54.6-1.10.52.02.2
Pavlov. Cond. lever contacts1.21.42.9-0.70.21.51.7
Pavlov. Cond. magazine entry number3.64.55.72.4-1.7-2.3-2.1
Pavlov. Cond. intertrial magazine entries0.80.91.21.1-0.9-1.0-0.9
Pavlov. Cond. lever-magazine prob. diff.2.22.84.4-1.40.72.02.1
Pavlov. Cond. response bias2.93.54.6-2.01.32.12.0
Pavlov. Cond. lever latency3.75.05.92.4-2.2-2.4-1.9
Pavlov. Cond. magazine entry latency1.72.13.9-2.02.00.80.0
Pavlov. Cond. change in total contacts3.45.56.7-2.42.22.62.2
Pavlov. Cond. index score5.37.19.6-3.12.82.62.0
Pavlov. Cond. latency score4.66.18.5-2.92.62.41.8
Pavlov. Cond. lever contacts4.05.56.4-2.52.22.52.1
Pavlov. Cond. magazine entry number4.65.79.43.1-2.9-1.9-1.1
Pavlov. Cond. intertrial magazine entries0.10.20.40.3-0.30.40.6
Pavlov. Cond. lever-magazine prob. diff.4.96.68.8-3.02.72.61.9
Pavlov. Cond. response bias3.95.36.9-2.62.52.31.7
Time in closed arm before self-admin0.50.71.01.0-0.5-0.9-0.8
Time in closed arm after self-admin0.30.40.40.6-0.6-0.7-0.5
Time in open arm before self-admin4.04.36.9-2.62.12.01.5
Time in open arm after self-admin0.30.30.7-0.70.90.2-0.1
Bone: periosteal estimation2.14.45.6-2.11.72.42.1
Bone: periosteal perimeter0.50.81.6-0.50.31.21.2
Bone: post-yield work0.30.40.6-0.6-0.00.70.8
Progressive ratio test 1 active lever presses1.62.04.70.4-0.91.42.2
Progressive ratio test 1 breakpoint1.82.25.30.4-0.91.62.3
Progressive ratio test 1 inactive lever presses1.01.52.71.6-1.70.10.8
Progressive ratio test 2 active lever presses2.02.33.81.3-2.00.81.8
Progressive ratio test 2 breakpoint2.02.23.61.2-1.90.81.8
Progressive ratio test 2 inactive lever presses0.91.53.11.8-1.6-0.10.5
Incentive Sensitization - Responses0.60.81.80.8-1.30.20.8
Incentive Sensitization - Breakpoint0.70.91.90.9-1.40.20.8
Sum of active levers in priming session hrs 5-60.30.30.50.5-0.70.20.5
Progressive ratio0.10.10.20.3-0.20.30.4
Food seeking constrained by brief footshock1.92.33.9-1.62.01.40.8
Seeking ratio, punishment vs. effort0.50.71.6-1.11.20.3-0.1
Retroperitoneal fat weight2.611.013.9-3.32.93.73.3
Reaction time number correct0.81.63.21.4-1.80.21.1
Reaction time mean minus median1.43.57.2-2.52.70.7-0.3
Reaction time mean minus median AUC0.92.24.5-2.02.10.7-0.1
Reaction time num false alarms0.10.10.10.3-0.0-0.3-0.3
Reaction time num false alarms AUC0.10.10.30.5-0.4-0.3-0.1
Reaction time trials correct on left0.81.63.21.4-1.80.21.1
Reaction time trials on left0.81.53.01.4-1.70.21.0
Reaction time mean1.21.84.2-1.62.10.0-0.8
Reaction time mean AUC1.21.94.1-1.52.0-0.2-1.0
Median of all reaction times0.71.01.9-0.81.4-0.5-1.1
Reaction time omissions1.31.93.3-1.11.8-0.7-1.6
Reaction time false alarm rate0.10.10.3-0.20.5-0.2-0.4
Reaction time premature initiation rate4.66.38.22.5-2.0-2.9-2.6
Reaction time premature initiations3.35.98.12.8-2.7-2.3-1.7
Std. dev. reaction times2.34.38.8-2.73.00.9-0.2
Reaction time trials completed0.81.53.01.4-1.70.21.0
Reaction time trials AUC0.81.42.81.3-1.70.21.0
Run reversals in cocaine runway, females0.40.40.9-0.10.20.90.9
Run reversals in cocaine runway, males0.90.91.3-0.80.61.21.1
Latency to leave start box in cocaine runway0.30.30.7-0.30.8-0.2-0.8
Latency to leave start box in cocaine runway, F0.30.41.00.10.4-0.6-1.0
Latency to leave start box in cocaine runway, M0.40.41.1-0.71.10.2-0.3
Std. dev. time between licks in bursts0.40.61.0-1.01.00.60.2
Total sessions with >9 infusions1.21.52.91.5-1.70.10.9
Short access day 1 total inactive lever presses0.40.50.91.0-0.90.20.6
Short access day 10 total inactive lever presses0.20.50.9-1.00.90.2-0.2
Short access day 1 total infusions1.01.32.41.4-1.50.20.9
Short access day 10 total infusions1.21.62.41.4-1.60.51.3
Short access total infusions1.82.34.61.8-2.10.21.2
Short access day 1 locomotion1.01.31.9-1.00.91.41.3
Short access day 10 total locomotion0.30.60.9-1.00.60.80.8
Short access total locomotion0.91.02.5-0.4-0.21.21.6
One hour access (0.3 mA shock)0.91.02.50.1-0.90.91.6
Compulsive drug intake3.64.37.1-2.72.02.01.6
One hour access (shock baseline)1.72.65.32.2-2.3-0.50.4
Social response proportion3.84.35.52.1-1.9-2.4-2.0
Social responses0.00.10.20.1-0.4-0.2-0.1
Social time6.58.811.43.0-2.5-3.4-3.0
Soleus weight1.33.88.1-2.52.80.3-0.8
Bone: stiffness0.61.01.7-0.80.51.21.3
Tibialis anterior weight7.525.529.0-5.44.95.44.5
Time to tail flick, vehicle, before self-admin1.11.21.81.0-0.4-1.2-1.3
Time to tail flick, vehicle, after self-admin2.12.84.82.0-2.2-1.4-0.8
Time to tail flick, test, before self-admin1.81.93.9-1.82.00.1-0.7
Time to tail flick, test, after self-admin0.60.61.1-1.01.0-0.1-0.5
Delta time to tail flick, vehicle, before/after SA2.22.14.51.7-2.1-1.0-0.3
Delta time to tail flick, test, before/after SA0.10.10.20.2-0.5-0.00.2
Tibia length1.02.76.91.8-2.6-0.40.6
Ambulatory time before self-admin0.60.91.5-1.20.70.90.8
Ambulatory time after self-admin1.51.72.2-1.50.91.41.4
Bone: tissue strength1.51.53.00.8-0.2-1.5-1.7
Total heroin consumption0.50.60.9-0.90.90.70.5
Bone: trabecular number0.10.10.4-0.30.60.1-0.2
Bone: trabecular spacing0.40.51.30.7-1.2-0.30.1
Bone: trabecular thickness0.20.20.5-0.3-0.0-0.6-0.7
Bone: trabecular tissue density2.03.04.31.5-1.4-2.1-1.9
Water consumed over 24 hours1.41.92.9-1.71.41.30.9
Number of responses in last shaping day0.50.61.1-0.30.41.01.0