Ccdc144b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Ccdc144b 0.04 0.05 5.7e-04 0.01 0.01 0.01 0.01 5.7e-03 2.2e-03 4.3e-03 3.9e-03
2 NAcc alternative TSS XM_039103619.2 0.04 0.03 3.0e-05 0.01 0.02 0.02 0.02 3.9e-03 2.2e-04 2.2e-04 5.8e-04
3 pVTA alternative TSS XM_039103619.2 0.04 0.03 2.3e-03 0.01 0.03 0.01 0.01 5.8e-02 4.2e-03 2.2e-02 4.3e-02
4 BLA alternative polyA XM_063282872.1 0.08 0.06 1.7e-03 0.01 0.04 0.03 0.02 8.7e-02 4.4e-03 7.4e-03 3.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.3-0.5-0.6-0.2-0.5
Area under the delay curve0.71.02.0-1.4-1.40.2-0.3
BMI with tail4.214.616.9-4.1-3.84.13.3
BMI without tail1.26.28.8-3.0-2.82.31.6
Body weight4.017.723.3-4.8-4.14.33.5
Weight adjusted by age0.10.20.40.40.6-0.5-0.3
Bone surface0.40.81.2-0.8-0.61.11.0
Bone volume0.00.10.2-0.5-0.30.30.2
Breakpoint value in progressive ratio session0.81.41.8-1.2-1.11.31.2
Number of licking bursts1.23.75.1-2.3-1.92.01.5
Context. condit. distance diff. score0.91.12.8-0.3-0.4-1.2-1.7
Locomotion velocity, session 11.11.33.2-0.20.21.41.8
Locomotion distance, session 12.22.95.5-1.0-0.62.12.4
Locomotion velocity, session 21.72.04.5-0.5-0.01.82.1
Locomotion distance, session 21.11.63.6-0.50.11.51.9
Locomotion velocity, session 30.00.00.00.20.10.10.2
Locomotion distance, session 30.00.10.1-0.00.20.20.3
Stereotopy head waving bouts, day 30.50.61.00.60.90.51.0
Stereotopy head waving duration, day 30.00.00.10.20.00.20.2
Locomotion velocity, session 70.50.61.4-0.10.30.91.2
Locomotion distance, session 70.81.11.61.01.3-1.1-0.8
Stereotopy head waving bouts, day 70.91.01.5-0.9-0.61.21.2
Stereotopy head waving duration, day 70.60.81.2-0.7-0.51.11.1
Locomotion velocity, session 80.91.12.1-1.4-1.50.60.2
Locomotion distance, session 80.50.81.6-1.3-1.00.60.3
Degree of sensitization distance1.31.41.81.11.1-1.4-1.2
Degree of sensitization stereotypy0.80.80.9-1.0-1.01.00.8
Conditioned locomotion2.42.93.71.61.5-1.9-1.7
Cocaine response after cond. corrected0.81.32.90.50.0-1.4-1.7
Cocaine response after cond. not corrected0.50.81.00.90.5-1.0-1.0
Cocaine response before conditioning1.01.22.80.40.51.21.7
Saline control response0.91.32.9-0.5-0.11.41.7
Bone: connectivity density1.21.92.3-1.4-1.31.51.3
Bone: cortical apparent density0.50.81.60.91.3-0.7-0.4
Bone: cortical area0.71.21.5-1.1-1.01.21.0
Bone: cortical porosity0.30.40.60.2-0.8-0.4-0.8
Bone: cortical porosity0.30.30.80.0-0.9-0.3-0.7
Bone: cortical thickness0.10.10.20.4-0.0-0.4-0.5
Bone: cortical thickness0.30.40.6-0.6-0.50.80.7
Bone: cortical tissue density0.50.71.60.91.3-0.7-0.3
Condit. Reinf. active minus inactive responses0.91.01.4-0.9-0.81.21.0
Condit. Reinf. active-inactive response ratio0.60.61.2-0.9-1.10.60.2
Condit. Reinf. active responses3.24.25.8-1.8-1.62.42.2
Condit. Reinf. inactive responses3.95.18.8-1.6-1.12.83.0
Incentive salience index mean0.81.11.5-0.9-0.71.21.2
Condit. Reinf. lever presses0.81.22.6-0.5-0.21.41.6
Condit. Reinf. active minus inactive responses0.60.91.6-0.5-0.61.21.3
Condit. Reinf. active-inactive response ratio0.20.30.60.2-0.1-0.6-0.8
Condit. Reinf. active responses2.53.56.6-1.0-0.82.42.6
Condit. Reinf. inactive responses5.68.314.5-1.9-1.43.63.8
Condit. Reinf. lever presses1.52.22.8-1.7-1.61.51.0
Condit. Reinf. lever reinforcers received2.43.35.9-1.1-0.92.32.4
Conditioned reinforcement - actives0.20.91.51.21.20.30.8
Conditioned reinforcement - inactives0.41.02.21.51.1-0.7-0.5
Conditioned locomotion0.71.02.4-0.40.11.21.6
Patch foraging indifference point 0 sec1.44.17.0-2.7-2.51.50.8
Patch foraging indifference point AUC0.10.20.60.00.30.50.8
Delay disc. indifference point, 0s delay0.30.40.90.71.0-0.00.5
Delay disc. indifference point, 16s delay0.50.81.7-1.3-1.10.3-0.0
Delay disc. indifference point, 2s delay0.70.81.5-1.2-1.20.3-0.1
Delay disc. indifference point, 24s delay0.20.40.9-0.2-0.2-0.7-0.9
Delay disc. indifference point, 4s delay1.01.11.8-1.3-1.30.80.5
Delay disc. indifference point, 8s delay0.30.51.0-0.5-0.6-0.6-1.0
Indifference point function ln k0.20.81.4-0.5-1.0-0.6-1.2
Indifference point function log k0.20.81.4-0.5-1.0-0.6-1.2
Patch foraging total patch changes 0 sec1.13.35.4-2.3-2.31.40.8
Patch foraging total patch changes 12 sec0.10.10.20.00.3-0.4-0.3
Patch foraging total patch changes 18 sec0.41.01.3-1.1-1.01.10.9
Patch foraging total patch changes 24 sec1.24.05.8-2.4-2.21.91.4
Patch foraging total patch changes 6 sec0.81.42.2-1.5-1.41.00.7
Patch foraging time to switch 0 sec0.31.01.21.01.0-1.1-0.9
Patch foraging water rate 0 sec0.00.00.0-0.1-0.1-0.0-0.1
Patch foraging water rate 12 sec0.00.20.40.00.10.50.7
Patch foraging water rate 18 sec0.30.60.9-0.5-0.40.91.0
Patch foraging water rate 24 sec0.40.50.9-0.7-0.20.91.0
Patch foraging water rate 6 sec0.00.10.1-0.0-0.10.30.3
Seeking ratio, delayed vs. immediate footshock2.23.24.2-2.0-2.01.71.2
Distance traveled before self-admin0.81.73.2-1.8-1.31.10.8
Distance traveled after self-admin2.54.56.1-2.5-1.92.21.9
Extensor digitorum longus weight4.417.722.2-4.7-4.64.23.1
Bone: elastic displacement1.72.15.30.1-0.9-1.6-2.3
Bone: elastic work2.53.36.41.20.5-2.3-2.5
Bone: endosteal estimation2.25.47.0-2.4-1.82.62.4
Bone: endosteal perimeter1.02.44.1-1.2-0.71.92.0
Epididymis fat weight1.57.59.9-3.2-3.02.72.0
Delta time in closed arm before/after self-admin0.30.30.5-0.7-0.50.50.4
Delta time in open arm before/after self-admin0.70.91.50.70.3-1.2-1.2
Diff in mean of infusions in LGA sessions0.40.71.4-1.1-1.20.40.0
Delay discount exponential model param0.81.02.11.31.5-0.10.4
Extinction: sum of active levers before priming0.10.10.3-0.10.20.40.6
Active lever presses in extinction session 60.00.10.2-0.2-0.40.1-0.1
Bone: final force1.72.83.5-1.7-1.61.91.6
Bone: final moment1.82.83.3-1.8-1.71.81.4
Food consumed during 24 hour testing period0.51.01.9-1.4-1.10.90.6
Glucose0.20.30.60.60.8-0.20.1
Heart weight2.43.85.4-2.1-2.31.91.3
Delay discount hyperbolic model param0.81.02.21.31.5-0.20.4
Intermittent access intake day 1-15 change0.42.13.81.91.5-1.2-0.9
Intermittent access intake escalation0.31.63.11.71.4-1.0-0.7
Intermittent access intake escalation 20.20.40.70.80.6-0.5-0.4
Intermitt. access day 1 inactive lever presses0.00.40.80.90.6-0.5-0.4
Intermitt. access day 15 inactive lever presses0.21.23.01.71.0-0.7-0.4
Intermitt. access escalation Index0.10.30.40.70.3-0.6-0.6
Intermittent access day 1 total infusions0.82.55.62.02.4-0.30.7
Intermittent access day 15 total infusions1.33.36.32.52.5-0.60.3
Intermittent access terminal intake (last 3 days)2.23.97.62.72.8-0.80.2
Intermittent access total infusions1.92.24.11.62.00.41.4
Intermittent access day 1 locomotion0.51.02.30.30.90.91.5
Intermittent access day 15 total locomotion0.31.22.2-0.8-0.31.31.5
Intermittent access total locomotion1.21.53.3-0.70.11.41.8
Intermittent access standard deviation0.10.51.01.00.5-0.6-0.5
Left kidney weight0.21.73.4-1.9-1.70.60.0
Right kidney weight0.75.19.6-2.8-3.11.60.6
Cocaine induced anxiety0.92.54.3-2.1-1.81.30.8
Post-drug Anxiety0.91.11.9-1.1-1.40.90.5
Baseline Anxiety1.01.72.91.71.2-1.2-1.0
Tail length0.00.20.5-0.7-0.50.1-0.2
Length with tail0.62.84.4-2.1-1.71.61.2
Length without tail1.58.010.7-3.3-2.82.92.3
Times rat made contact with spout0.20.20.3-0.5-0.20.40.4
Lifetime Intake1.92.34.31.82.10.31.3
Liver weight, left0.10.20.40.30.60.20.5
Liver weight, right0.20.40.70.80.6-0.6-0.5
Locomotor activity0.20.41.11.00.6-0.3-0.2
Locomotor testing distance1.12.74.5-0.9-1.22.12.0
Locomotor testing rearing0.00.10.30.60.2-0.00.0
Locomotion in novel chamber1.52.12.8-1.7-1.31.51.2
Locomotion in novel chamber post-restriction0.00.00.00.1-0.10.10.1
Fecal boli incidents, locomotor time 10.71.92.31.51.3-1.4-1.2
Change in fecal boli incidents, locomotor task1.51.62.0-1.3-0.91.41.4
Time >=10cm from walls, locomotor time 10.10.10.30.30.60.00.3
Bouts of movement, locomotor time 10.70.91.11.10.8-1.0-0.9
Total resting periods, locomotor time 11.92.22.71.51.1-1.7-1.6
Rest time, locomotor task time 10.91.41.71.31.0-1.3-1.1
Distance moved, locomotor task time 11.02.83.3-1.8-1.31.81.6
Vertical activity count, locomotor time 10.53.34.6-2.1-1.81.81.4
Time >=10cm from walls, locomotor time 20.10.40.70.80.8-0.5-0.2
Bouts of movement, locomotor time 21.03.24.62.11.4-1.8-1.7
Total resting periods, locomotor time 20.62.53.41.91.2-1.6-1.6
Rest time, locomotor task time 20.10.20.40.30.1-0.5-0.6
Distance moved, locomotor task time 21.11.52.1-1.2-0.71.41.5
Vertical activity count, locomotor time 20.61.52.9-1.0-0.31.41.7
Light reinforcement 10.31.21.91.41.2-1.0-0.6
Light reinforcement 20.20.50.80.80.9-0.7-0.4
Bone: marrow area2.35.77.2-2.5-1.92.72.4
Bone: maximum diameter1.02.02.9-1.3-1.01.71.6
Bone: maximum force0.51.01.2-1.0-0.81.11.0
Bone: maximum moment0.50.91.3-1.1-1.01.00.7
Mean time between licks in bursts0.00.10.10.10.3-0.4-0.4
Mean num. licks in bursts0.82.02.71.61.4-1.5-1.2
Cd content in liver1.01.12.01.41.4-0.6-0.2
Co content in liver1.01.11.6-1.2-1.21.00.7
Cu content in liver0.20.30.3-0.6-0.30.60.6
Fe content in liver0.40.60.70.70.6-0.8-0.8
K content in liver0.90.81.40.50.7-1.2-1.1
Mg content in liver0.50.61.30.10.1-1.0-1.2
Mn content in liver2.02.22.91.51.2-1.7-1.5
Na content in liver0.70.81.4-0.7-0.21.01.2
Rb content in liver0.30.40.9-0.6-1.0-0.1-0.5
Se content in liver2.32.74.12.02.0-1.4-0.8
Sr content in liver0.30.30.40.60.60.20.5
Zn content in liver0.10.10.4-0.6-0.30.30.2
Bone: minimum diameter1.93.64.3-2.0-1.82.11.7
Time in familiar zone, hab. session 10.10.10.20.10.40.20.4
Time in novel zone, hab. session 10.00.00.10.30.1-0.00.0
Total zone transitions, hab. session 11.31.92.7-1.4-1.61.41.0
Total locomotion distance, hab. session 10.91.31.9-0.8-1.01.41.3
Locomotion velocity, hab. session 11.01.41.7-1.0-1.21.31.1
Time in familiar zone, hab. session 23.53.95.72.42.0-1.9-1.5
Time in novel zone, hab. session 23.03.34.8-2.2-2.01.71.2
Total zone transitions, hab. session 22.93.75.3-1.7-1.42.32.2
Total locomotion distance, hab. session 21.62.13.2-1.1-1.01.81.8
Locomotion velocity, hab. session 22.02.74.5-1.1-0.92.12.1
Novel to familiar place preference ratio0.71.01.8-0.6-1.1-0.7-1.3
Novelty place preference0.91.22.3-0.5-1.2-0.8-1.5
Time in novel zone, NPP test1.11.32.3-0.9-1.5-0.6-1.4
Total zone transitions, NPP test1.01.53.7-0.10.31.51.9
Total locomotion distance, NPP test0.81.12.60.20.41.21.6
Locomotion velocity, NPP test0.71.02.10.60.80.91.4
Intraocular pressure0.71.11.81.31.0-1.0-0.7
Delta distance traveled before/after self-admin0.30.30.5-0.5-0.40.70.6
Delta ambulatory time before/after self-admin0.20.40.5-0.6-0.50.70.6
Parametrial fat weight0.61.42.1-0.9-0.71.41.4
Pavlov. Cond. lever latency0.81.02.20.4-0.0-1.3-1.5
Pavlov. Cond. magazine entry latency2.43.14.0-1.8-1.32.01.8
Pavlov. Cond. change in total contacts0.60.61.2-0.5-0.11.01.1
Pavlov. Cond. index score2.53.15.1-1.4-0.82.22.3
Pavlov. Cond. latency score2.02.54.6-1.1-0.52.02.2
Pavlov. Cond. lever contacts1.21.42.9-0.7-0.21.51.7
Pavlov. Cond. magazine entry number3.64.55.72.41.7-2.3-2.1
Pavlov. Cond. intertrial magazine entries0.80.91.21.10.9-1.0-0.9
Pavlov. Cond. lever-magazine prob. diff.2.22.84.4-1.4-0.72.02.1
Pavlov. Cond. response bias2.83.54.6-2.0-1.32.12.0
Pavlov. Cond. lever latency3.65.05.92.42.2-2.4-1.9
Pavlov. Cond. magazine entry latency1.52.13.9-2.0-2.00.80.0
Pavlov. Cond. change in total contacts2.35.56.7-2.4-2.22.62.2
Pavlov. Cond. index score4.57.19.6-3.1-2.82.62.0
Pavlov. Cond. latency score3.86.18.5-2.9-2.62.41.8
Pavlov. Cond. lever contacts3.75.56.4-2.5-2.22.52.1
Pavlov. Cond. magazine entry number4.45.79.43.12.9-1.9-1.1
Pavlov. Cond. intertrial magazine entries0.10.20.40.30.30.40.6
Pavlov. Cond. lever-magazine prob. diff.4.36.68.8-3.0-2.72.61.9
Pavlov. Cond. response bias3.95.36.9-2.6-2.52.31.7
Time in closed arm before self-admin0.40.71.01.00.5-0.9-0.8
Time in closed arm after self-admin0.30.40.40.60.6-0.7-0.5
Time in open arm before self-admin3.64.36.9-2.6-2.12.01.5
Time in open arm after self-admin0.30.30.7-0.7-0.90.2-0.1
Bone: periosteal estimation1.84.45.6-2.1-1.72.42.1
Bone: periosteal perimeter0.40.81.6-0.5-0.31.21.2
Bone: post-yield work0.20.40.6-0.60.00.70.8
Progressive ratio test 1 active lever presses1.12.04.70.40.91.42.2
Progressive ratio test 1 breakpoint1.32.25.30.40.91.62.3
Progressive ratio test 1 inactive lever presses0.61.52.71.61.70.10.8
Progressive ratio test 2 active lever presses1.72.33.81.32.00.81.8
Progressive ratio test 2 breakpoint1.82.23.71.21.90.81.8
Progressive ratio test 2 inactive lever presses0.51.53.11.81.6-0.10.5
Incentive Sensitization - Responses0.30.81.80.81.30.20.8
Incentive Sensitization - Breakpoint0.40.91.90.91.40.20.8
Sum of active levers in priming session hrs 5-60.30.30.50.50.70.20.5
Progressive ratio0.00.10.20.30.20.30.4
Food seeking constrained by brief footshock1.82.33.9-1.6-2.01.40.8
Seeking ratio, punishment vs. effort0.30.71.6-1.1-1.30.3-0.1
Retroperitoneal fat weight2.511.013.9-3.3-2.93.73.3
Reaction time number correct0.41.63.21.41.80.21.1
Reaction time mean minus median0.53.57.2-2.5-2.70.7-0.3
Reaction time mean minus median AUC0.32.24.5-2.0-2.10.7-0.1
Reaction time num false alarms0.00.10.10.30.0-0.3-0.3
Reaction time num false alarms AUC0.10.10.30.50.4-0.3-0.1
Reaction time trials correct on left0.41.63.21.41.80.21.1
Reaction time trials on left0.41.53.01.41.70.21.0
Reaction time mean0.81.84.2-1.6-2.10.0-0.8
Reaction time mean AUC0.81.94.1-1.5-2.0-0.2-1.0
Median of all reaction times0.71.01.9-0.8-1.4-0.5-1.1
Reaction time omissions1.21.93.3-1.1-1.8-0.7-1.6
Reaction time false alarm rate0.10.10.3-0.2-0.5-0.2-0.4
Reaction time premature initiation rate4.16.38.22.52.0-2.9-2.6
Reaction time premature initiations1.95.98.12.82.7-2.3-1.7
Std. dev. reaction times1.34.38.8-2.7-3.00.9-0.2
Reaction time trials completed0.41.53.01.41.70.21.0
Reaction time trials AUC0.41.42.91.31.70.21.0
Run reversals in cocaine runway, females0.40.40.9-0.1-0.20.90.9
Run reversals in cocaine runway, males0.80.91.3-0.8-0.61.21.1
Latency to leave start box in cocaine runway0.30.30.7-0.3-0.8-0.2-0.8
Latency to leave start box in cocaine runway, F0.30.41.00.1-0.4-0.6-1.0
Latency to leave start box in cocaine runway, M0.40.41.1-0.7-1.10.2-0.3
Std. dev. time between licks in bursts0.30.61.0-1.0-1.00.60.2
Total sessions with >9 infusions1.21.52.91.51.70.10.9
Short access day 1 total inactive lever presses0.30.50.91.00.90.20.6
Short access day 10 total inactive lever presses0.10.50.9-1.0-0.90.2-0.2
Short access day 1 total infusions0.71.32.41.41.50.20.9
Short access day 10 total infusions1.01.62.41.41.60.51.3
Short access total infusions1.62.34.61.82.20.21.2
Short access day 1 locomotion0.81.31.9-1.0-0.81.41.3
Short access day 10 total locomotion0.20.60.9-1.0-0.60.80.8
Short access total locomotion0.71.02.5-0.40.21.21.6
One hour access (0.3 mA shock)0.91.02.50.10.90.91.6
Compulsive drug intake2.94.37.1-2.7-2.02.01.6
One hour access (shock baseline)1.02.65.32.22.3-0.50.4
Social response proportion3.44.35.52.11.9-2.4-2.0
Social responses0.00.10.20.10.4-0.2-0.1
Social time5.68.811.43.02.5-3.4-3.0
Soleus weight1.33.88.1-2.5-2.80.3-0.8
Bone: stiffness0.61.01.7-0.8-0.51.21.3
Tibialis anterior weight7.425.529.0-5.4-4.95.44.5
Time to tail flick, vehicle, before self-admin0.91.21.81.00.4-1.2-1.3
Time to tail flick, vehicle, after self-admin1.42.84.82.02.2-1.4-0.8
Time to tail flick, test, before self-admin1.61.93.9-1.8-2.00.1-0.7
Time to tail flick, test, after self-admin0.50.61.1-1.0-1.0-0.1-0.5
Delta time to tail flick, vehicle, before/after SA2.02.14.51.72.1-1.0-0.3
Delta time to tail flick, test, before/after SA0.10.10.20.20.5-0.00.2
Tibia length1.02.76.91.82.6-0.40.6
Ambulatory time before self-admin0.30.91.5-1.2-0.70.90.8
Ambulatory time after self-admin1.11.72.2-1.5-0.91.41.4
Bone: tissue strength1.41.53.00.80.2-1.5-1.7
Total heroin consumption0.50.60.9-0.9-0.90.70.5
Bone: trabecular number0.10.10.4-0.3-0.60.1-0.2
Bone: trabecular spacing0.30.51.30.71.2-0.30.1
Bone: trabecular thickness0.20.20.5-0.30.0-0.6-0.7
Bone: trabecular tissue density1.73.04.31.51.4-2.1-1.9
Water consumed over 24 hours1.01.92.9-1.7-1.41.30.9
Number of responses in last shaping day0.50.61.1-0.3-0.41.01.0