Cbx2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Cbx2 0.06 0.03 1.1e-08 0.07 0.06 0.07 0.07 4.1e-08 1.4e-07 4.0e-08 2.9e-08
2 Brain isoform ratio NM_001107071.2 0.04 0.03 7.2e-03 0.02 0.02 0.02 0.03 1.1e-02 1.2e-02 4.3e-03 2.0e-03
3 Adipose isoform ratio NM_001107071.2 0.03 0.02 2.0e-04 0.04 0.04 0.03 0.04 8.2e-05 7.1e-05 6.5e-04 5.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.91.51.2-0.9-0.7
Area under the delay curve1.01.23.5-1.90.10.1
BMI with tail0.10.20.60.20.8-0.3
BMI without tail0.10.30.50.40.70.4
Body weight1.25.17.6-1.82.82.1
Weight adjusted by age0.40.60.7-0.80.80.8
Bone surface0.10.10.3-0.20.10.6
Bone volume0.10.30.60.8-0.4-0.2
Breakpoint value in progressive ratio session0.40.40.70.4-0.9-0.6
Number of licking bursts0.10.10.2-0.40.40.3
Context. condit. distance diff. score0.70.91.30.4-1.1-1.1
Locomotion velocity, session 10.91.01.7-1.30.90.7
Locomotion distance, session 11.11.41.80.9-1.3-1.3
Locomotion velocity, session 20.30.40.40.5-0.6-0.6
Locomotion distance, session 21.42.02.81.7-1.2-1.3
Locomotion velocity, session 30.20.20.5-0.70.20.2
Locomotion distance, session 30.30.40.70.2-0.6-0.8
Stereotopy head waving bouts, day 30.00.00.1-0.20.30.0
Stereotopy head waving duration, day 30.10.10.20.2-0.2-0.4
Locomotion velocity, session 70.40.40.8-0.1-0.9-0.6
Locomotion distance, session 75.57.08.62.2-2.9-2.8
Stereotopy head waving bouts, day 70.30.30.6-0.80.50.3
Stereotopy head waving duration, day 70.91.01.4-1.21.00.8
Locomotion velocity, session 80.70.91.6-0.2-1.3-1.0
Locomotion distance, session 83.65.25.82.1-2.3-2.4
Degree of sensitization distance2.42.53.01.7-1.7-1.2
Degree of sensitization stereotypy0.00.00.1-0.30.1-0.1
Conditioned locomotion0.00.10.10.4-0.10.1
Cocaine response after cond. corrected0.00.00.1-0.1-0.0-0.3
Cocaine response after cond. not corrected0.00.10.1-0.2-0.2-0.3
Cocaine response before conditioning0.10.10.3-0.3-0.5-0.0
Saline control response0.50.70.8-0.70.90.9
Bone: connectivity density0.40.71.20.6-1.1-0.6
Bone: cortical apparent density1.01.31.61.1-1.1-1.3
Bone: cortical area5.68.610.9-2.53.32.9
Bone: cortical porosity1.41.52.0-0.91.31.4
Bone: cortical porosity1.82.02.3-1.21.41.5
Bone: cortical thickness5.99.714.7-2.33.83.0
Bone: cortical thickness2.02.43.0-1.51.71.4
Bone: cortical tissue density1.11.51.71.2-1.1-1.3
Condit. Reinf. active minus inactive responses0.10.20.4-0.20.20.6
Condit. Reinf. active-inactive response ratio0.10.10.30.1-0.50.1
Condit. Reinf. active responses0.40.40.9-0.30.60.9
Condit. Reinf. inactive responses0.10.10.30.00.50.3
Incentive salience index mean0.30.40.7-0.50.40.8
Condit. Reinf. lever presses0.10.10.10.3-0.3-0.3
Condit. Reinf. active minus inactive responses0.60.81.8-1.30.40.7
Condit. Reinf. active-inactive response ratio1.61.92.2-1.41.31.5
Condit. Reinf. active responses0.30.40.70.0-0.9-0.6
Condit. Reinf. inactive responses2.12.73.51.4-1.9-1.7
Condit. Reinf. lever presses2.12.83.21.6-1.8-1.6
Condit. Reinf. lever reinforcers received0.81.21.80.6-1.4-1.1
Conditioned reinforcement - actives0.71.32.01.4-0.5-1.2
Conditioned reinforcement - inactives0.20.30.50.30.70.5
Conditioned locomotion0.50.71.71.3-0.2-0.5
Patch foraging indifference point 0 sec1.01.93.92.0-1.0-1.0
Patch foraging indifference point AUC0.10.20.50.2-0.7-0.2
Delay disc. indifference point, 0s delay0.80.82.3-1.50.40.0
Delay disc. indifference point, 16s delay0.80.91.50.1-1.2-1.2
Delay disc. indifference point, 2s delay0.91.12.7-1.60.40.5
Delay disc. indifference point, 24s delay0.30.30.8-0.90.3-0.1
Delay disc. indifference point, 4s delay1.21.23.7-1.90.00.1
Delay disc. indifference point, 8s delay2.83.37.5-2.71.01.2
Indifference point function ln k0.91.62.41.6-0.6-1.5
Indifference point function log k0.91.62.41.6-0.6-1.5
Patch foraging total patch changes 0 sec1.52.85.32.3-1.3-1.3
Patch foraging total patch changes 12 sec0.60.81.81.3-0.6-0.4
Patch foraging total patch changes 18 sec2.43.65.31.6-2.3-1.8
Patch foraging total patch changes 24 sec0.00.00.0-0.0-0.00.1
Patch foraging total patch changes 6 sec0.30.41.01.00.30.3
Patch foraging time to switch 0 sec0.20.41.2-1.10.10.1
Patch foraging water rate 0 sec0.40.92.21.5-0.5-0.3
Patch foraging water rate 12 sec1.22.54.02.0-0.9-1.7
Patch foraging water rate 18 sec1.82.75.02.2-1.0-1.5
Patch foraging water rate 24 sec4.76.59.53.1-2.2-2.3
Patch foraging water rate 6 sec0.50.71.01.0-0.5-0.9
Seeking ratio, delayed vs. immediate footshock0.50.61.4-1.20.60.2
Distance traveled before self-admin0.30.40.4-0.60.60.7
Distance traveled after self-admin1.31.62.81.7-1.1-0.9
Extensor digitorum longus weight0.93.43.92.0-1.7-1.9
Bone: elastic displacement0.40.40.80.40.90.6
Bone: elastic work4.15.38.2-1.22.92.5
Bone: endosteal estimation0.40.91.90.4-1.4-0.7
Bone: endosteal perimeter1.12.33.2-1.80.91.7
Epididymis fat weight0.00.00.00.00.2-0.1
Delta time in closed arm before/after self-admin0.30.30.7-0.80.30.1
Delta time in open arm before/after self-admin0.70.71.21.1-0.7-0.6
Diff in mean of infusions in LGA sessions0.10.10.1-0.4-0.10.3
Delay discount exponential model param1.21.44.02.0-0.1-0.2
Extinction: sum of active levers before priming0.50.50.80.9-0.4-0.7
Active lever presses in extinction session 60.00.00.10.0-0.10.4
Bone: final force2.74.35.5-1.82.32.0
Bone: final moment2.74.46.0-1.72.42.1
Food consumed during 24 hour testing period0.10.20.30.1-0.50.6
Glucose0.30.40.7-0.50.80.4
Heart weight1.32.03.4-1.11.91.2
Delay discount hyperbolic model param1.31.44.12.0-0.2-0.3
Intermittent access intake day 1-15 change0.10.20.4-0.50.70.0
Intermittent access intake escalation0.10.20.4-0.40.7-0.0
Intermittent access intake escalation 20.40.50.8-0.80.90.4
Intermitt. access day 1 inactive lever presses0.10.41.01.0-0.10.4
Intermitt. access day 15 inactive lever presses0.30.50.80.6-0.9-0.7
Intermitt. access escalation Index0.10.10.1-0.30.00.4
Intermittent access day 1 total infusions0.40.61.31.10.1-0.7
Intermittent access day 15 total infusions0.20.30.50.30.7-0.4
Intermittent access terminal intake (last 3 days)0.20.30.70.00.9-0.4
Intermittent access total infusions0.30.30.50.40.5-0.7
Intermittent access day 1 locomotion0.20.20.60.80.10.0
Intermittent access day 15 total locomotion0.20.30.80.20.90.2
Intermittent access total locomotion0.20.20.50.70.5-0.1
Intermittent access standard deviation0.81.73.5-1.91.20.4
Left kidney weight0.73.24.4-2.11.81.4
Right kidney weight0.62.93.8-1.91.71.4
Cocaine induced anxiety2.33.23.4-1.71.91.8
Post-drug Anxiety0.60.60.9-0.40.91.0
Baseline Anxiety1.51.82.41.6-1.3-1.1
Tail length1.45.37.5-2.02.12.7
Length with tail2.912.613.3-3.63.43.6
Length without tail2.47.89.5-3.12.92.4
Times rat made contact with spout0.50.61.40.30.51.2
Lifetime Intake0.20.30.60.30.3-0.8
Liver weight, left0.10.10.2-0.40.50.2
Liver weight, right1.42.52.6-1.51.61.6
Locomotor activity0.40.60.80.9-0.6-0.9
Locomotor testing distance0.91.72.01.2-1.3-1.4
Locomotor testing rearing1.12.32.61.4-1.6-1.5
Locomotion in novel chamber0.30.41.00.6-1.0-0.1
Locomotion in novel chamber post-restriction0.40.61.30.60.41.1
Fecal boli incidents, locomotor time 10.20.30.70.5-0.1-0.8
Change in fecal boli incidents, locomotor task0.60.60.60.7-0.8-0.8
Time >=10cm from walls, locomotor time 10.60.71.00.4-1.0-0.9
Bouts of movement, locomotor time 10.10.10.20.2-0.3-0.5
Total resting periods, locomotor time 10.20.20.30.6-0.2-0.4
Rest time, locomotor task time 10.30.30.70.20.90.4
Distance moved, locomotor task time 10.10.10.2-0.4-0.10.2
Vertical activity count, locomotor time 10.10.10.4-0.0-0.6-0.1
Time >=10cm from walls, locomotor time 20.10.10.20.00.4-0.4
Bouts of movement, locomotor time 20.10.10.2-0.2-0.5-0.1
Total resting periods, locomotor time 20.10.10.2-0.2-0.5-0.0
Rest time, locomotor task time 20.10.20.3-0.40.30.5
Distance moved, locomotor task time 20.20.20.4-0.60.60.1
Vertical activity count, locomotor time 20.00.00.1-0.20.0-0.3
Light reinforcement 10.40.91.61.3-0.7-0.7
Light reinforcement 20.40.70.8-0.60.90.9
Bone: marrow area0.40.92.00.4-1.4-0.8
Bone: maximum diameter3.56.58.0-2.82.32.5
Bone: maximum force1.93.44.5-1.52.11.9
Bone: maximum moment1.93.44.9-1.32.21.9
Mean time between licks in bursts0.00.00.10.1-0.3-0.1
Mean num. licks in bursts0.20.30.80.9-0.30.2
Cd content in liver3.43.84.51.9-1.9-2.1
Co content in liver0.00.00.10.30.10.1
Cu content in liver0.60.71.1-0.50.91.1
Fe content in liver1.31.61.91.0-1.4-1.4
K content in liver0.00.00.10.1-0.10.3
Mg content in liver1.21.21.61.3-1.2-0.8
Mn content in liver0.30.30.5-0.70.30.5
Na content in liver0.00.00.1-0.1-0.20.0
Rb content in liver0.30.40.40.6-0.6-0.6
Se content in liver0.50.60.80.6-0.9-0.7
Sr content in liver0.20.20.30.10.60.5
Zn content in liver0.50.61.0-0.11.00.8
Bone: minimum diameter1.22.23.0-1.21.51.7
Time in familiar zone, hab. session 10.70.71.31.1-0.5-0.7
Time in novel zone, hab. session 10.40.41.1-1.10.20.3
Total zone transitions, hab. session 11.31.82.21.2-1.3-1.5
Total locomotion distance, hab. session 10.91.21.61.0-1.0-1.3
Locomotion velocity, hab. session 10.81.11.21.1-0.9-1.1
Time in familiar zone, hab. session 21.01.11.21.1-0.9-1.1
Time in novel zone, hab. session 20.20.20.5-0.70.30.4
Total zone transitions, hab. session 23.74.75.62.4-2.0-2.1
Total locomotion distance, hab. session 21.92.43.61.9-1.3-1.4
Locomotion velocity, hab. session 21.31.72.71.7-1.1-1.1
Novel to familiar place preference ratio0.20.30.70.9-0.10.2
Novelty place preference0.20.20.60.7-0.00.2
Time in novel zone, NPP test0.30.41.01.0-0.3-0.1
Total zone transitions, NPP test2.23.23.61.7-1.8-1.9
Total locomotion distance, NPP test3.64.96.82.6-1.8-2.2
Locomotion velocity, NPP test2.53.65.12.3-1.5-1.8
Intraocular pressure0.40.50.70.8-0.8-0.5
Delta distance traveled before/after self-admin2.12.32.71.6-1.3-1.5
Delta ambulatory time before/after self-admin2.63.23.51.8-1.7-1.9
Parametrial fat weight0.20.41.21.10.00.2
Pavlov. Cond. lever latency4.65.87.71.6-2.8-2.7
Pavlov. Cond. magazine entry latency3.44.44.9-2.02.02.2
Pavlov. Cond. change in total contacts0.40.40.70.00.80.7
Pavlov. Cond. index score4.35.46.5-1.82.52.6
Pavlov. Cond. latency score5.06.47.9-1.92.82.7
Pavlov. Cond. lever contacts2.12.53.9-0.62.01.8
Pavlov. Cond. magazine entry number3.84.85.41.9-2.3-2.3
Pavlov. Cond. intertrial magazine entries1.01.21.41.2-1.1-0.9
Pavlov. Cond. lever-magazine prob. diff.3.44.25.3-1.52.32.3
Pavlov. Cond. response bias3.54.35.2-1.62.32.3
Pavlov. Cond. lever latency1.41.92.2-1.41.51.2
Pavlov. Cond. magazine entry latency4.45.36.22.2-2.2-2.5
Pavlov. Cond. change in total contacts2.64.24.61.9-2.1-2.1
Pavlov. Cond. index score2.94.04.11.9-2.0-2.0
Pavlov. Cond. latency score2.63.43.81.7-1.9-1.9
Pavlov. Cond. lever contacts1.92.73.01.7-1.7-1.5
Pavlov. Cond. magazine entry number3.74.55.1-1.92.22.3
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.90.10.9
Pavlov. Cond. lever-magazine prob. diff.3.24.34.52.0-2.1-2.1
Pavlov. Cond. response bias3.04.04.52.1-2.0-2.0
Time in closed arm before self-admin0.50.71.0-0.31.00.9
Time in closed arm after self-admin1.11.11.4-0.91.21.1
Time in open arm before self-admin0.10.10.4-0.60.1-0.0
Time in open arm after self-admin1.41.62.01.4-1.2-1.1
Bone: periosteal estimation1.02.02.3-1.51.31.5
Bone: periosteal perimeter7.012.013.3-3.33.53.6
Bone: post-yield work0.10.20.40.4-0.6-0.2
Progressive ratio test 1 active lever presses0.20.30.50.7-0.3-0.6
Progressive ratio test 1 breakpoint0.20.20.40.7-0.2-0.5
Progressive ratio test 1 inactive lever presses0.00.10.10.4-0.00.1
Progressive ratio test 2 active lever presses0.40.51.01.0-0.0-0.7
Progressive ratio test 2 breakpoint0.40.50.91.0-0.0-0.7
Progressive ratio test 2 inactive lever presses0.10.20.50.10.7-0.3
Incentive Sensitization - Responses0.10.10.30.20.60.0
Incentive Sensitization - Breakpoint0.10.10.30.20.6-0.0
Sum of active levers in priming session hrs 5-60.40.40.50.7-0.5-0.6
Progressive ratio0.60.91.70.5-0.8-1.3
Food seeking constrained by brief footshock0.10.20.4-0.60.2-0.2
Seeking ratio, punishment vs. effort0.20.30.4-0.60.30.6
Retroperitoneal fat weight0.00.10.2-0.10.10.5
Reaction time number correct4.38.48.82.8-2.9-3.0
Reaction time mean minus median0.30.70.9-0.71.00.8
Reaction time mean minus median AUC0.61.61.8-1.31.31.2
Reaction time num false alarms0.20.30.40.6-0.4-0.5
Reaction time num false alarms AUC0.30.50.70.8-0.7-0.7
Reaction time trials correct on left4.38.48.82.8-2.9-3.0
Reaction time trials on left4.58.48.92.8-2.9-3.0
Reaction time mean0.00.00.1-0.0-0.1-0.3
Reaction time mean AUC0.10.10.30.2-0.3-0.5
Median of all reaction times0.10.20.40.2-0.4-0.6
Reaction time omissions0.50.71.5-1.20.70.4
Reaction time false alarm rate0.40.60.6-0.70.80.8
Reaction time premature initiation rate1.31.82.71.6-1.3-1.0
Reaction time premature initiations4.68.29.63.1-2.9-2.6
Std. dev. reaction times0.10.10.20.0-0.3-0.5
Reaction time trials completed4.58.48.92.8-2.9-3.0
Reaction time trials AUC4.89.19.53.0-3.0-3.1
Run reversals in cocaine runway, females2.02.03.30.8-1.4-1.8
Run reversals in cocaine runway, males0.50.51.30.21.10.6
Latency to leave start box in cocaine runway1.11.31.41.2-1.1-1.1
Latency to leave start box in cocaine runway, F1.71.92.01.4-1.3-1.4
Latency to leave start box in cocaine runway, M0.10.10.30.5-0.3-0.2
Std. dev. time between licks in bursts1.11.52.51.4-1.6-0.5
Total sessions with >9 infusions0.20.20.60.2-0.3-0.8
Short access day 1 total inactive lever presses0.50.60.7-0.80.80.7
Short access day 10 total inactive lever presses0.40.91.7-0.40.81.3
Short access day 1 total infusions0.50.61.10.6-0.7-1.1
Short access day 10 total infusions0.20.20.30.30.60.4
Short access total infusions0.20.20.50.4-0.1-0.7
Short access day 1 locomotion0.00.10.20.10.4-0.1
Short access day 10 total locomotion0.10.20.5-0.20.50.7
Short access total locomotion0.40.50.7-0.70.90.5
One hour access (0.3 mA shock)0.80.91.21.1-0.5-1.1
Compulsive drug intake0.10.10.20.1-0.30.4
One hour access (shock baseline)0.10.20.30.40.4-0.5
Social response proportion0.20.30.4-0.1-0.6-0.7
Social responses0.00.00.0-0.1-0.1-0.2
Social time0.00.00.10.1-0.1-0.3
Soleus weight0.82.23.4-0.61.71.9
Bone: stiffness0.81.31.7-1.31.20.9
Tibialis anterior weight0.10.20.40.6-0.1-0.4
Time to tail flick, vehicle, before self-admin0.30.30.50.00.60.7
Time to tail flick, vehicle, after self-admin0.60.81.4-0.71.20.7
Time to tail flick, test, before self-admin0.10.10.20.2-0.50.2
Time to tail flick, test, after self-admin1.71.83.7-1.90.90.8
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.1-0.1-0.2
Delta time to tail flick, test, before/after SA1.01.02.2-1.50.90.1
Tibia length13.537.143.8-6.65.95.7
Ambulatory time before self-admin0.60.91.1-0.81.01.0
Ambulatory time after self-admin0.81.01.41.2-0.9-0.8
Bone: tissue strength0.30.30.91.00.0-0.1
Total heroin consumption0.30.41.2-1.10.10.2
Bone: trabecular number0.00.00.00.1-0.20.1
Bone: trabecular spacing1.11.52.80.5-1.2-1.7
Bone: trabecular thickness0.50.71.30.10.81.1
Bone: trabecular tissue density0.20.41.0-1.00.20.2
Water consumed over 24 hours0.10.20.30.10.40.5
Number of responses in last shaping day0.60.60.8-0.70.90.8