Castor1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Castor1 0.09 0.04 7.0e-09 0.07 0.06 0.05 0.06 1.1e-08 3.3e-07 5.6e-06 1.9e-07
2 pVTA intron excision ratio chr14_83309880_83310405 0.04 0.03 9.3e-03 0.02 0.03 0.02 0.03 8.6e-03 3.5e-03 4.9e-03 3.9e-03
3 NAcc gene expression Castor1 0.05 0.03 9.3e-06 0.03 0.04 0.03 0.03 1.2e-05 7.5e-07 1.8e-05 1.6e-05
4 BLA gene expression Castor1 0.18 0.12 8.2e-03 0.04 0.02 0.04 0.04 3.5e-03 2.1e-02 2.7e-03 4.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.61.11.0-0.6-0.7-0.7
Area under the delay curve5.17.810.7-3.33.23.0-1.2
BMI with tail0.51.63.0-0.81.71.01.3
BMI without tail0.10.61.2-0.50.90.11.1
Body weight1.77.515.5-2.83.92.6-0.1
Weight adjusted by age0.51.51.8-1.21.31.2-1.2
Bone surface0.00.10.1-0.20.40.3-0.2
Bone volume0.00.00.00.10.20.0-0.2
Breakpoint value in progressive ratio session0.20.41.0-0.30.60.4-1.0
Number of licking bursts0.30.91.9-1.21.40.50.3
Context. condit. distance diff. score1.72.03.01.7-1.4-1.70.4
Locomotion velocity, session 10.40.41.30.3-1.10.3-0.3
Locomotion distance, session 11.21.52.91.7-1.3-1.0-0.7
Locomotion velocity, session 20.81.02.70.6-1.60.3-0.9
Locomotion distance, session 22.12.95.22.0-2.3-1.40.8
Locomotion velocity, session 31.21.44.02.0-0.9-0.80.1
Locomotion distance, session 30.20.20.70.0-0.00.90.4
Stereotopy head waving bouts, day 31.41.73.31.8-1.4-1.10.3
Stereotopy head waving duration, day 32.63.25.12.3-1.8-1.71.3
Locomotion velocity, session 70.10.10.30.1-0.40.5-0.3
Locomotion distance, session 70.40.61.21.1-0.9-0.40.4
Stereotopy head waving bouts, day 70.20.20.4-0.30.70.40.3
Stereotopy head waving duration, day 70.20.20.4-0.30.70.20.5
Locomotion velocity, session 82.42.94.81.0-2.1-1.22.2
Locomotion distance, session 86.39.112.53.5-3.3-3.31.4
Degree of sensitization distance2.62.84.51.7-1.8-2.10.6
Degree of sensitization stereotypy0.40.51.1-0.71.00.4-0.0
Conditioned locomotion0.50.51.21.10.1-0.80.5
Cocaine response after cond. corrected0.81.21.6-0.81.21.3-1.0
Cocaine response after cond. not corrected2.13.14.7-0.81.91.7-2.2
Cocaine response before conditioning0.91.13.60.50.50.3-1.9
Saline control response0.71.02.41.2-1.5-0.4-0.5
Bone: connectivity density0.30.51.21.1-0.4-0.5-0.6
Bone: cortical apparent density0.50.81.9-0.90.6-0.31.4
Bone: cortical area2.03.25.4-1.82.31.5-1.3
Bone: cortical porosity1.01.13.40.40.50.8-1.8
Bone: cortical porosity0.40.41.10.70.30.2-1.1
Bone: cortical thickness1.52.45.6-1.52.41.0-0.9
Bone: cortical thickness0.40.51.01.00.2-1.0-0.2
Bone: cortical tissue density0.60.92.1-1.00.7-0.21.5
Condit. Reinf. active minus inactive responses0.20.20.4-0.2-0.30.70.4
Condit. Reinf. active-inactive response ratio0.90.91.90.1-1.30.21.4
Condit. Reinf. active responses0.10.10.10.3-0.40.20.3
Condit. Reinf. inactive responses0.30.40.90.10.8-0.1-0.9
Incentive salience index mean0.30.41.2-0.50.31.1-0.1
Condit. Reinf. lever presses0.30.50.9-0.21.00.9-0.5
Condit. Reinf. active minus inactive responses0.81.31.61.3-1.2-0.9-1.1
Condit. Reinf. active-inactive response ratio0.20.31.10.2-0.10.2-1.1
Condit. Reinf. active responses1.62.34.21.7-2.1-1.2-0.8
Condit. Reinf. inactive responses1.62.44.31.6-2.1-1.50.6
Condit. Reinf. lever presses0.40.61.01.0-0.9-0.7-0.3
Condit. Reinf. lever reinforcers received1.31.83.11.5-1.8-1.0-0.9
Conditioned reinforcement - actives0.51.92.9-1.41.71.6-0.7
Conditioned reinforcement - inactives1.33.65.6-2.41.72.3-0.8
Conditioned locomotion1.11.72.7-1.41.61.4-0.2
Patch foraging indifference point 0 sec0.10.20.6-0.80.30.0-0.1
Patch foraging indifference point AUC0.30.82.30.7-1.50.1-0.6
Delay disc. indifference point, 0s delay4.85.411.4-2.43.42.1-0.4
Delay disc. indifference point, 16s delay3.65.28.8-3.02.32.4-0.8
Delay disc. indifference point, 2s delay5.25.88.3-2.42.92.4-1.9
Delay disc. indifference point, 24s delay2.64.26.5-2.12.62.3-0.7
Delay disc. indifference point, 4s delay4.24.45.6-2.12.12.4-1.9
Delay disc. indifference point, 8s delay0.91.53.1-1.81.01.40.2
Indifference point function ln k0.20.62.00.40.5-0.0-1.4
Indifference point function log k0.20.62.00.40.5-0.0-1.4
Patch foraging total patch changes 0 sec0.10.20.5-0.70.30.2-0.2
Patch foraging total patch changes 12 sec0.10.10.20.00.5-0.0-0.2
Patch foraging total patch changes 18 sec0.20.50.7-0.9-0.20.80.7
Patch foraging total patch changes 24 sec1.03.34.01.5-1.9-1.82.0
Patch foraging total patch changes 6 sec0.20.30.5-0.6-0.20.5-0.7
Patch foraging time to switch 0 sec1.24.615.5-0.31.0-1.43.9
Patch foraging water rate 0 sec0.62.16.2-0.3-0.21.5-2.5
Patch foraging water rate 12 sec0.31.22.51.2-0.90.3-1.6
Patch foraging water rate 18 sec0.71.62.31.5-0.6-1.3-1.5
Patch foraging water rate 24 sec0.40.60.80.9-0.9-0.2-0.7
Patch foraging water rate 6 sec0.60.92.70.9-0.60.0-1.6
Seeking ratio, delayed vs. immediate footshock1.21.75.30.0-1.10.4-2.3
Distance traveled before self-admin0.10.30.7-0.4-0.60.0-0.8
Distance traveled after self-admin0.10.20.7-0.50.10.2-0.8
Extensor digitorum longus weight2.28.611.0-2.73.33.0-2.7
Bone: elastic displacement0.40.51.3-0.1-0.1-0.91.1
Bone: elastic work0.20.30.5-0.30.7-0.50.4
Bone: endosteal estimation0.00.10.3-0.0-0.2-0.1-0.6
Bone: endosteal perimeter0.51.21.7-1.20.61.0-1.3
Epididymis fat weight0.52.67.3-1.42.71.00.4
Delta time in closed arm before/after self-admin3.33.16.02.5-1.0-1.9-1.3
Delta time in open arm before/after self-admin4.35.09.8-3.11.72.11.8
Diff in mean of infusions in LGA sessions0.00.10.1-0.3-0.2-0.10.4
Delay discount exponential model param5.47.39.63.1-3.0-2.91.2
Extinction: sum of active levers before priming0.81.31.9-1.21.11.4-0.7
Active lever presses in extinction session 61.01.01.8-0.31.40.8-1.1
Bone: final force0.40.61.4-0.70.6-0.21.2
Bone: final moment0.30.40.7-0.90.7-0.10.6
Food consumed during 24 hour testing period0.20.30.6-0.5-0.80.5-0.5
Glucose9.314.829.2-5.21.65.40.2
Heart weight0.40.61.1-0.60.91.0-0.5
Delay discount hyperbolic model param5.87.59.63.1-3.1-3.01.4
Intermittent access intake day 1-15 change0.20.91.6-1.20.81.3-0.0
Intermittent access intake escalation0.21.32.4-1.21.11.5-0.6
Intermittent access intake escalation 20.20.30.6-0.80.50.60.4
Intermitt. access day 1 inactive lever presses0.11.13.10.20.51.0-1.8
Intermitt. access day 15 inactive lever presses0.21.23.2-1.10.31.8-0.6
Intermitt. access escalation Index0.20.61.30.5-0.7-0.71.1
Intermittent access day 1 total infusions0.61.93.1-1.81.71.2-0.2
Intermittent access day 15 total infusions1.64.06.1-2.52.12.2-0.8
Intermittent access terminal intake (last 3 days)1.42.54.1-2.01.51.7-0.7
Intermittent access total infusions2.53.04.7-2.21.71.9-0.9
Intermittent access day 1 locomotion0.00.10.20.0-0.4-0.1-0.1
Intermittent access day 15 total locomotion0.93.45.5-2.22.31.90.1
Intermittent access total locomotion1.72.13.3-1.61.21.8-0.9
Intermittent access standard deviation0.00.00.1-0.10.00.2-0.0
Left kidney weight0.11.02.50.81.6-0.4-0.9
Right kidney weight0.21.64.40.92.1-0.6-0.9
Cocaine induced anxiety0.71.83.4-1.30.81.9-1.2
Post-drug Anxiety2.02.33.1-1.41.51.8-1.4
Baseline Anxiety0.30.51.1-0.41.1-0.10.9
Tail length0.63.14.2-1.71.71.6-2.1
Length with tail1.15.17.5-2.12.71.9-2.2
Length without tail0.62.96.5-1.42.51.4-1.2
Times rat made contact with spout0.50.62.3-0.2-1.50.30.4
Lifetime Intake2.43.04.6-2.11.51.9-1.3
Liver weight, left0.50.91.91.4-0.1-0.8-1.1
Liver weight, right0.81.52.31.5-0.4-1.51.0
Locomotor activity0.30.41.1-0.5-0.61.1-0.2
Locomotor testing distance0.30.71.0-0.30.80.9-1.0
Locomotor testing rearing0.62.03.5-1.41.11.9-1.2
Locomotion in novel chamber0.50.61.41.2-0.3-0.7-0.6
Locomotion in novel chamber post-restriction0.51.62.81.2-1.7-1.01.0
Fecal boli incidents, locomotor time 10.20.40.80.4-0.9-0.1-0.8
Change in fecal boli incidents, locomotor task1.21.23.30.4-1.2-0.21.8
Time >=10cm from walls, locomotor time 11.82.37.6-0.40.8-0.82.8
Bouts of movement, locomotor time 10.91.24.0-0.60.50.42.0
Total resting periods, locomotor time 11.21.34.4-0.70.40.62.1
Rest time, locomotor task time 10.10.20.50.2-0.70.20.4
Distance moved, locomotor task time 10.00.10.2-0.40.3-0.4-0.3
Vertical activity count, locomotor time 10.00.20.4-0.4-0.4-0.4-0.6
Time >=10cm from walls, locomotor time 20.00.10.20.2-0.2-0.50.1
Bouts of movement, locomotor time 20.20.51.70.50.40.3-1.3
Total resting periods, locomotor time 20.10.41.20.40.30.4-1.1
Rest time, locomotor task time 20.40.61.00.5-1.0-0.50.9
Distance moved, locomotor task time 20.10.10.2-0.10.3-0.40.4
Vertical activity count, locomotor time 20.20.51.5-0.40.40.2-1.2
Light reinforcement 10.10.40.90.20.90.4-0.6
Light reinforcement 20.10.20.50.30.2-0.70.4
Bone: marrow area0.00.10.30.0-0.3-0.1-0.5
Bone: maximum diameter2.44.97.4-2.72.12.3-1.5
Bone: maximum force0.20.30.4-0.60.5-0.50.6
Bone: maximum moment0.10.20.5-0.70.5-0.4-0.0
Mean time between licks in bursts0.10.51.9-0.0-1.40.20.1
Mean num. licks in bursts0.61.65.21.0-2.3-0.3-0.0
Cd content in liver0.30.40.7-0.80.20.70.5
Co content in liver0.40.50.8-0.50.80.9-0.5
Cu content in liver0.20.20.3-0.40.60.5-0.4
Fe content in liver0.60.71.51.0-1.2-0.5-0.0
K content in liver3.73.67.0-1.42.61.8-1.5
Mg content in liver3.13.46.7-1.32.61.8-1.4
Mn content in liver0.20.20.50.10.20.4-0.7
Na content in liver4.75.38.1-2.51.92.8-1.8
Rb content in liver0.60.71.3-1.11.00.6-0.3
Se content in liver3.33.95.5-1.42.21.8-2.4
Sr content in liver2.11.84.4-2.11.01.40.2
Zn content in liver0.10.20.40.10.40.2-0.6
Bone: minimum diameter0.20.41.30.4-0.2-0.4-1.1
Time in familiar zone, hab. session 11.51.72.90.1-1.3-1.41.7
Time in novel zone, hab. session 11.01.22.4-0.31.11.0-1.5
Total zone transitions, hab. session 10.60.82.50.3-1.6-0.60.4
Total locomotion distance, hab. session 10.30.40.70.1-0.80.4-0.8
Locomotion velocity, hab. session 10.20.30.70.4-0.80.3-0.4
Time in familiar zone, hab. session 22.62.94.51.2-1.4-2.12.0
Time in novel zone, hab. session 21.31.52.4-1.11.11.5-1.1
Total zone transitions, hab. session 20.10.10.3-0.1-0.60.40.2
Total locomotion distance, hab. session 20.20.30.6-0.6-0.30.80.1
Locomotion velocity, hab. session 20.30.41.2-0.70.11.1-0.3
Novel to familiar place preference ratio1.01.43.3-1.20.61.8-0.7
Novelty place preference1.11.43.2-1.10.61.8-0.9
Time in novel zone, NPP test1.01.22.7-1.10.41.6-0.9
Total zone transitions, NPP test0.20.40.80.7-0.1-0.4-0.9
Total locomotion distance, NPP test0.20.30.80.30.10.2-0.9
Locomotion velocity, NPP test0.30.41.30.10.50.5-1.1
Intraocular pressure1.32.17.2-0.5-1.00.02.7
Delta distance traveled before/after self-admin0.30.40.8-0.10.90.20.8
Delta ambulatory time before/after self-admin0.10.20.60.40.4-0.10.8
Parametrial fat weight1.63.96.1-2.2-0.22.12.5
Pavlov. Cond. lever latency0.30.40.7-0.80.10.7-0.5
Pavlov. Cond. magazine entry latency1.41.83.11.6-1.8-1.20.3
Pavlov. Cond. change in total contacts0.30.30.8-0.40.20.90.1
Pavlov. Cond. index score1.11.42.71.6-1.2-1.20.5
Pavlov. Cond. latency score1.11.42.41.5-1.1-1.30.7
Pavlov. Cond. lever contacts0.70.81.71.3-0.5-0.90.7
Pavlov. Cond. magazine entry number1.41.83.2-1.81.80.80.0
Pavlov. Cond. intertrial magazine entries1.41.64.4-0.31.40.4-2.1
Pavlov. Cond. lever-magazine prob. diff.1.21.53.11.8-1.1-1.30.4
Pavlov. Cond. response bias0.50.61.51.2-0.6-0.3-0.5
Pavlov. Cond. lever latency1.72.45.2-1.62.31.3-0.5
Pavlov. Cond. magazine entry latency0.00.10.1-0.3-0.1-0.1-0.4
Pavlov. Cond. change in total contacts0.30.81.80.6-1.3-1.00.4
Pavlov. Cond. index score0.60.91.90.9-1.4-0.90.1
Pavlov. Cond. latency score0.71.12.21.0-1.5-1.0-0.1
Pavlov. Cond. lever contacts1.72.55.01.7-2.2-1.30.2
Pavlov. Cond. magazine entry number0.10.20.30.60.40.4-0.2
Pavlov. Cond. intertrial magazine entries0.10.30.60.80.10.3-0.6
Pavlov. Cond. lever-magazine prob. diff.0.71.02.10.9-1.4-1.10.2
Pavlov. Cond. response bias0.81.12.31.0-1.5-1.00.3
Time in closed arm before self-admin0.30.61.10.7-0.3-1.10.7
Time in closed arm after self-admin2.12.44.92.2-0.6-2.0-0.4
Time in open arm before self-admin0.30.41.30.40.00.1-1.1
Time in open arm after self-admin1.51.73.3-1.80.61.31.2
Bone: periosteal estimation0.40.91.2-1.01.10.6-1.1
Bone: periosteal perimeter1.42.83.6-1.71.91.6-1.6
Bone: post-yield work0.10.20.4-0.6-0.3-0.1-0.6
Progressive ratio test 1 active lever presses1.93.44.2-1.81.42.0-2.1
Progressive ratio test 1 breakpoint2.03.44.2-1.81.52.0-2.0
Progressive ratio test 1 inactive lever presses1.84.87.3-2.71.52.5-1.8
Progressive ratio test 2 active lever presses1.62.34.5-2.11.41.50.6
Progressive ratio test 2 breakpoint1.62.14.0-2.01.31.40.8
Progressive ratio test 2 inactive lever presses1.34.16.1-2.51.92.11.5
Incentive Sensitization - Responses1.02.76.8-1.71.00.52.6
Incentive Sensitization - Breakpoint1.22.77.2-1.60.90.42.7
Sum of active levers in priming session hrs 5-61.01.02.2-0.71.50.7-0.9
Progressive ratio0.20.71.7-0.90.2-0.11.3
Food seeking constrained by brief footshock1.92.43.8-2.01.81.4-0.9
Seeking ratio, punishment vs. effort0.71.65.10.30.60.9-2.3
Retroperitoneal fat weight0.83.812.0-1.40.21.13.5
Reaction time number correct0.20.72.10.7-1.5-0.40.2
Reaction time mean minus median0.00.10.2-0.40.30.4-0.4
Reaction time mean minus median AUC0.10.40.9-0.50.90.5-0.3
Reaction time num false alarms0.40.82.0-0.91.40.5-0.3
Reaction time num false alarms AUC0.30.61.9-0.71.40.1-0.1
Reaction time trials correct on left0.20.72.10.7-1.5-0.40.2
Reaction time trials on left0.20.72.20.7-1.5-0.40.2
Reaction time mean0.10.10.4-0.10.6-0.10.2
Reaction time mean AUC0.00.10.30.10.6-0.20.0
Median of all reaction times0.10.20.30.10.6-0.30.5
Reaction time omissions0.20.30.70.8-0.6-0.30.4
Reaction time false alarm rate1.01.44.5-1.02.10.4-0.3
Reaction time premature initiation rate2.64.07.62.8-1.9-2.20.0
Reaction time premature initiations1.33.96.52.6-2.3-2.00.0
Std. dev. reaction times0.10.30.7-0.60.50.20.8
Reaction time trials completed0.20.72.20.7-1.5-0.40.2
Reaction time trials AUC0.20.61.80.7-1.3-0.3-0.0
Run reversals in cocaine runway, females1.51.76.20.00.1-0.62.5
Run reversals in cocaine runway, males0.10.10.1-0.3-0.10.1-0.3
Latency to leave start box in cocaine runway0.20.30.8-0.30.00.4-0.9
Latency to leave start box in cocaine runway, F0.20.20.4-0.60.60.3-0.4
Latency to leave start box in cocaine runway, M0.80.72.00.1-0.60.7-1.4
Std. dev. time between licks in bursts0.40.82.00.8-1.4-0.70.1
Total sessions with >9 infusions0.60.82.70.4-0.50.0-1.6
Short access day 1 total inactive lever presses1.22.34.7-2.20.91.8-0.8
Short access day 10 total inactive lever presses0.10.92.60.7-0.40.5-1.6
Short access day 1 total infusions0.10.20.80.10.0-0.0-0.9
Short access day 10 total infusions0.00.10.2-0.1-0.40.0-0.2
Short access total infusions0.30.40.7-0.80.10.6-0.8
Short access day 1 locomotion0.50.91.30.9-1.1-1.0-0.7
Short access day 10 total locomotion0.72.86.31.7-2.5-1.2-0.8
Short access total locomotion2.23.46.52.0-2.5-1.3-1.1
One hour access (0.3 mA shock)1.72.04.3-2.11.01.5-0.6
Compulsive drug intake1.21.83.31.8-1.1-1.7-0.0
One hour access (shock baseline)1.94.98.0-2.81.92.6-0.9
Social response proportion1.11.44.4-0.8-0.60.22.1
Social responses0.60.82.3-0.8-0.40.51.5
Social time1.01.64.80.3-0.9-0.82.2
Soleus weight0.51.42.8-0.71.30.7-1.7
Bone: stiffness0.10.20.40.70.2-0.40.1
Tibialis anterior weight1.24.24.7-2.12.22.1-1.8
Time to tail flick, vehicle, before self-admin1.11.34.6-0.20.6-0.62.1
Time to tail flick, vehicle, after self-admin0.20.41.30.4-0.4-0.01.1
Time to tail flick, test, before self-admin1.01.22.11.4-0.8-0.2-1.4
Time to tail flick, test, after self-admin0.70.71.4-0.80.51.2-0.8
Delta time to tail flick, vehicle, before/after SA0.30.30.80.3-0.90.4-0.5
Delta time to tail flick, test, before/after SA0.80.92.2-1.50.70.90.6
Tibia length0.30.81.71.00.6-1.3-0.3
Ambulatory time before self-admin0.10.30.6-0.8-0.20.2-0.8
Ambulatory time after self-admin0.10.10.4-0.3-0.10.0-0.6
Bone: tissue strength0.70.71.3-0.0-0.6-1.01.2
Total heroin consumption0.10.20.40.5-0.2-0.60.1
Bone: trabecular number0.20.30.60.80.1-0.4-0.7
Bone: trabecular spacing0.91.33.5-1.90.10.71.0
Bone: trabecular thickness1.11.64.02.0-0.2-1.3-0.7
Bone: trabecular tissue density0.20.30.9-0.3-0.1-0.31.0
Water consumed over 24 hours0.40.82.9-0.1-1.7-0.50.2
Number of responses in last shaping day0.20.20.70.4-0.00.10.8