Card14

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Card14 0.06 0.04 4.5e-05 0.06 0.04 0.04 0.04 4.0e-06 3.0e-04 2.6e-04 1.6e-04
2 Brain alternative polyA XM_039087525.1 0.03 0.02 4.4e-03 0.02 0.02 0.02 0.02 2.6e-03 3.1e-03 2.2e-03 8.6e-03
3 Eye intron excision ratio chr10_104582228_104584014 0.36 0.19 4.0e-03 0.03 0.03 0.02 0.07 1.2e-01 1.3e-01 1.8e-01 3.4e-02
4 PL gene expression Card14 0.03 0.02 9.2e-04 0.01 0.02 0.02 0.02 6.3e-02 1.8e-03 1.1e-03 1.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.8-0.1-0.90.30.5
Area under the delay curve1.41.44.90.82.2-0.30.0
BMI with tail0.72.33.7-1.4-1.9-0.31.9
BMI without tail4.79.816.8-3.3-4.1-1.33.1
Body weight2.811.823.4-4.8-2.4-4.30.2
Weight adjusted by age2.02.34.3-2.1-1.5-1.60.0
Bone surface0.20.40.9-0.50.4-0.5-0.9
Bone volume0.10.10.2-0.5-0.4-0.2-0.2
Breakpoint value in progressive ratio session0.80.91.6-1.0-1.3-0.20.9
Number of licking bursts0.10.10.3-0.6-0.2-0.5-0.1
Context. condit. distance diff. score1.61.94.0-0.7-1.8-0.32.0
Locomotion velocity, session 13.33.65.82.22.41.0-1.7
Locomotion distance, session 11.51.93.81.70.11.91.0
Locomotion velocity, session 23.54.16.92.62.02.3-0.8
Locomotion distance, session 21.01.52.70.7-1.21.61.1
Locomotion velocity, session 31.21.42.51.61.30.8-0.8
Locomotion distance, session 32.22.45.42.31.01.80.2
Stereotopy head waving bouts, day 30.30.40.90.51.00.2-0.6
Stereotopy head waving duration, day 30.10.10.30.30.50.1-0.2
Locomotion velocity, session 70.60.61.11.10.70.80.4
Locomotion distance, session 72.83.65.82.0-0.12.42.1
Stereotopy head waving bouts, day 70.30.40.6-0.7-0.3-0.80.5
Stereotopy head waving duration, day 70.70.82.1-1.0-0.1-1.5-0.4
Locomotion velocity, session 80.40.51.60.40.40.01.3
Locomotion distance, session 83.14.69.0-0.4-2.91.03.0
Degree of sensitization distance1.41.42.6-1.0-1.60.01.4
Degree of sensitization stereotypy0.70.81.1-1.0-0.7-1.00.8
Conditioned locomotion3.23.86.4-2.5-2.3-1.51.1
Cocaine response after cond. corrected0.10.10.20.40.20.40.0
Cocaine response after cond. not corrected0.60.61.11.10.80.8-0.3
Cocaine response before conditioning0.70.81.31.11.00.8-0.3
Saline control response1.82.44.1-1.9-1.3-2.0-0.3
Bone: connectivity density0.10.20.40.4-0.30.60.4
Bone: cortical apparent density1.92.44.52.11.02.10.0
Bone: cortical area5.07.514.2-3.5-1.5-3.8-1.3
Bone: cortical porosity1.31.43.8-0.70.8-0.9-1.9
Bone: cortical porosity1.01.12.2-0.90.5-1.1-1.5
Bone: cortical thickness4.26.911.9-3.3-1.7-3.5-1.5
Bone: cortical thickness1.61.83.9-1.7-0.7-2.0-0.4
Bone: cortical tissue density2.22.85.22.31.12.20.1
Condit. Reinf. active minus inactive responses1.61.83.0-1.7-1.6-1.20.4
Condit. Reinf. active-inactive response ratio0.91.01.6-1.2-1.1-0.80.7
Condit. Reinf. active responses2.63.25.5-2.3-2.1-1.60.2
Condit. Reinf. inactive responses0.60.71.5-1.0-1.2-0.6-0.0
Incentive salience index mean1.41.62.9-1.7-1.4-1.30.2
Condit. Reinf. lever presses0.20.20.5-0.4-0.7-0.20.5
Condit. Reinf. active minus inactive responses1.21.53.5-1.3-0.9-1.90.3
Condit. Reinf. active-inactive response ratio1.71.83.2-1.8-0.9-1.8-0.5
Condit. Reinf. active responses0.81.11.7-0.7-1.2-0.91.3
Condit. Reinf. inactive responses0.80.92.10.8-0.50.81.5
Condit. Reinf. lever presses1.72.35.1-0.7-1.90.22.3
Condit. Reinf. lever reinforcers received1.42.04.2-0.7-1.8-0.62.0
Conditioned reinforcement - actives0.40.40.8-0.4-0.90.30.7
Conditioned reinforcement - inactives0.91.02.6-1.6-0.6-1.0-0.3
Conditioned locomotion0.30.41.0-1.0-0.80.0-0.1
Patch foraging indifference point 0 sec0.50.81.9-0.8-1.40.30.8
Patch foraging indifference point AUC0.10.10.2-0.2-0.20.30.5
Delay disc. indifference point, 0s delay0.40.41.1-0.20.7-1.1-0.1
Delay disc. indifference point, 16s delay0.70.72.20.60.50.31.5
Delay disc. indifference point, 2s delay0.70.72.1-0.01.5-0.9-0.2
Delay disc. indifference point, 24s delay3.23.16.52.02.51.3-0.5
Delay disc. indifference point, 4s delay0.80.81.9-0.11.4-1.10.3
Delay disc. indifference point, 8s delay2.22.37.11.02.7-0.5-0.9
Indifference point function ln k0.70.91.81.20.11.30.7
Indifference point function log k0.70.91.81.20.11.30.7
Patch foraging total patch changes 0 sec0.81.42.8-0.9-1.70.41.3
Patch foraging total patch changes 12 sec0.30.40.7-0.8-0.80.40.6
Patch foraging total patch changes 18 sec1.41.84.6-0.4-1.40.72.1
Patch foraging total patch changes 24 sec1.31.62.6-1.6-1.4-0.90.8
Patch foraging total patch changes 6 sec0.40.61.5-1.2-0.9-0.0-0.3
Patch foraging time to switch 0 sec0.71.12.01.31.40.4-0.6
Patch foraging water rate 0 sec3.45.58.8-3.0-2.9-1.41.7
Patch foraging water rate 12 sec1.92.95.5-0.6-2.30.82.3
Patch foraging water rate 18 sec2.33.16.1-1.6-2.5-0.11.9
Patch foraging water rate 24 sec6.59.017.4-2.4-4.2-0.43.5
Patch foraging water rate 6 sec0.81.12.1-0.6-1.40.01.4
Seeking ratio, delayed vs. immediate footshock0.60.61.3-1.0-0.6-1.1-0.2
Distance traveled before self-admin0.70.81.9-1.1-0.2-1.4-0.2
Distance traveled after self-admin1.71.94.8-0.8-2.20.21.4
Extensor digitorum longus weight0.93.47.2-0.5-2.31.02.7
Bone: elastic displacement1.21.42.8-1.5-1.7-0.8-0.0
Bone: elastic work4.35.510.4-3.2-1.6-2.6-1.5
Bone: endosteal estimation0.10.20.8-0.1-0.20.30.9
Bone: endosteal perimeter0.61.32.1-1.20.6-1.5-1.2
Epididymis fat weight1.12.54.3-2.1-1.7-1.21.1
Delta time in closed arm before/after self-admin0.50.40.8-0.40.6-0.7-0.9
Delta time in open arm before/after self-admin1.11.12.3-0.7-1.3-0.11.5
Diff in mean of infusions in LGA sessions0.10.10.2-0.2-0.10.10.5
Delay discount exponential model param1.81.96.4-1.1-2.50.20.1
Extinction: sum of active levers before priming0.80.81.71.10.31.30.5
Active lever presses in extinction session 60.30.30.5-0.7-0.5-0.30.5
Bone: final force3.86.111.0-3.2-1.7-3.3-0.6
Bone: final moment4.26.912.3-3.5-1.9-3.4-0.7
Food consumed during 24 hour testing period0.81.01.4-1.2-1.2-0.90.6
Glucose2.53.85.62.41.82.1-1.4
Heart weight0.30.40.8-0.9-0.8-0.40.0
Delay discount hyperbolic model param1.61.76.1-0.9-2.50.30.1
Intermittent access intake day 1-15 change0.10.10.2-0.30.2-0.50.1
Intermittent access intake escalation0.20.20.3-0.5-0.1-0.50.3
Intermittent access intake escalation 20.20.20.4-0.50.1-0.7-0.2
Intermitt. access day 1 inactive lever presses1.41.53.3-1.8-0.4-1.5-0.7
Intermitt. access day 15 inactive lever presses1.71.83.1-1.6-1.8-1.00.9
Intermitt. access escalation Index1.21.12.1-1.4-0.9-1.2-0.2
Intermittent access day 1 total infusions0.30.30.9-0.6-1.00.10.2
Intermittent access day 15 total infusions0.50.51.2-1.1-0.8-0.40.3
Intermittent access terminal intake (last 3 days)0.50.61.3-1.1-0.8-0.50.2
Intermittent access total infusions0.40.50.9-1.0-0.9-0.20.3
Intermittent access day 1 locomotion0.60.61.4-1.2-1.0-0.20.1
Intermittent access day 15 total locomotion0.20.20.6-0.8-0.3-0.3-0.2
Intermittent access total locomotion0.50.51.5-1.2-0.8-0.30.0
Intermittent access standard deviation0.60.62.10.31.4-0.3-0.3
Left kidney weight0.92.44.1-0.61.4-2.0-1.8
Right kidney weight0.61.83.9-0.91.0-2.0-1.2
Cocaine induced anxiety3.03.57.5-2.7-0.5-2.4-0.6
Post-drug Anxiety1.11.22.7-1.7-0.2-1.40.6
Baseline Anxiety3.63.87.62.81.62.20.6
Tail length4.212.623.6-4.9-3.0-4.20.2
Length with tail2.810.221.5-3.9-0.4-4.6-1.9
Length without tail2.04.47.9-0.12.5-1.9-2.8
Times rat made contact with spout0.80.91.6-1.3-0.9-0.6-0.9
Lifetime Intake0.10.10.2-0.5-0.50.10.0
Liver weight, left0.60.92.10.31.1-0.6-1.4
Liver weight, right2.64.49.7-2.1-0.2-3.1-1.8
Locomotor activity0.20.30.80.90.30.50.5
Locomotor testing distance0.20.30.70.70.00.50.8
Locomotor testing rearing0.91.43.3-0.3-1.50.11.8
Locomotion in novel chamber0.20.20.4-0.5-0.50.10.6
Locomotion in novel chamber post-restriction0.40.50.9-0.9-0.4-0.1-1.0
Fecal boli incidents, locomotor time 10.80.92.51.00.01.60.1
Change in fecal boli incidents, locomotor task2.01.93.71.91.51.4-0.0
Time >=10cm from walls, locomotor time 10.60.62.0-0.1-0.60.21.4
Bouts of movement, locomotor time 11.51.73.01.51.11.7-0.4
Total resting periods, locomotor time 12.12.34.21.71.32.0-0.7
Rest time, locomotor task time 10.70.81.30.50.71.0-1.1
Distance moved, locomotor task time 10.80.91.6-1.0-0.7-1.20.7
Vertical activity count, locomotor time 11.01.11.8-1.0-1.3-0.81.0
Time >=10cm from walls, locomotor time 20.10.10.2-0.50.3-0.10.1
Bouts of movement, locomotor time 20.80.91.41.21.20.9-0.3
Total resting periods, locomotor time 20.50.50.80.80.90.8-0.2
Rest time, locomotor task time 20.20.20.40.30.50.5-0.6
Distance moved, locomotor task time 20.40.51.2-0.80.1-1.10.0
Vertical activity count, locomotor time 20.40.40.7-0.6-0.5-0.80.6
Light reinforcement 12.13.88.8-1.8-3.0-0.71.5
Light reinforcement 21.92.54.0-1.8-2.0-1.70.2
Bone: marrow area0.10.20.8-0.0-0.20.30.9
Bone: maximum diameter1.93.58.1-2.00.2-2.8-1.4
Bone: maximum force3.56.010.7-3.3-1.9-3.1-0.6
Bone: maximum moment3.86.612.6-3.5-2.1-3.0-0.7
Mean time between licks in bursts0.71.01.91.40.91.2-0.2
Mean num. licks in bursts0.20.20.5-0.4-0.70.1-0.1
Cd content in liver1.11.21.91.3-0.21.11.4
Co content in liver0.40.50.70.1-0.80.70.8
Cu content in liver0.30.41.3-0.40.4-0.3-1.1
Fe content in liver0.50.61.10.90.31.10.6
K content in liver1.41.42.9-1.7-1.2-1.10.0
Mg content in liver0.80.81.6-0.4-1.30.61.0
Mn content in liver0.50.51.2-0.30.4-1.1-0.8
Na content in liver0.20.30.6-0.00.4-0.5-0.8
Rb content in liver1.51.83.4-1.3-1.8-0.51.4
Se content in liver0.30.40.5-0.7-0.5-0.70.6
Sr content in liver1.21.12.60.31.20.2-1.6
Zn content in liver0.91.02.70.11.1-0.3-1.6
Bone: minimum diameter2.54.68.6-2.9-1.4-2.8-0.6
Time in familiar zone, hab. session 10.20.20.30.2-0.20.60.4
Time in novel zone, hab. session 10.10.10.4-0.10.2-0.6-0.0
Total zone transitions, hab. session 10.60.91.70.5-0.71.11.3
Total locomotion distance, hab. session 11.21.73.1-0.8-1.7-0.01.7
Locomotion velocity, hab. session 11.01.52.9-0.8-1.70.01.5
Time in familiar zone, hab. session 20.50.50.90.3-0.40.91.0
Time in novel zone, hab. session 20.20.20.30.30.6-0.3-0.5
Total zone transitions, hab. session 22.02.54.50.3-1.81.52.1
Total locomotion distance, hab. session 22.33.17.7-0.8-2.80.51.9
Locomotion velocity, hab. session 22.22.97.6-1.0-2.80.21.8
Novel to familiar place preference ratio2.02.15.3-1.6-2.3-0.50.5
Novelty place preference1.81.84.5-1.5-2.1-0.60.3
Time in novel zone, NPP test1.81.84.8-1.4-2.2-0.40.6
Total zone transitions, NPP test1.42.03.80.4-1.51.31.9
Total locomotion distance, NPP test2.93.98.2-0.5-2.91.12.5
Locomotion velocity, NPP test2.33.37.5-0.7-2.70.92.1
Intraocular pressure0.50.71.1-0.9-1.0-0.11.1
Delta distance traveled before/after self-admin1.61.73.10.0-1.70.91.8
Delta ambulatory time before/after self-admin1.41.52.40.6-1.21.31.5
Parametrial fat weight0.91.84.7-2.2-1.0-1.2-0.4
Pavlov. Cond. lever latency2.32.97.41.1-0.81.62.7
Pavlov. Cond. magazine entry latency2.32.95.4-2.00.1-2.3-1.6
Pavlov. Cond. change in total contacts0.20.20.5-0.5-0.2-0.3-0.7
Pavlov. Cond. index score3.14.06.9-2.4-0.3-2.6-1.8
Pavlov. Cond. latency score3.03.85.9-2.00.2-2.4-2.3
Pavlov. Cond. lever contacts1.21.43.0-1.1-0.0-1.2-1.7
Pavlov. Cond. magazine entry number2.12.73.91.7-0.62.01.9
Pavlov. Cond. intertrial magazine entries0.70.92.0-0.1-1.40.71.1
Pavlov. Cond. lever-magazine prob. diff.3.13.96.8-2.5-0.5-2.6-1.5
Pavlov. Cond. response bias2.12.53.6-1.70.2-1.8-1.9
Pavlov. Cond. lever latency2.43.26.11.22.5-0.1-2.3
Pavlov. Cond. magazine entry latency2.12.46.00.8-0.81.62.4
Pavlov. Cond. change in total contacts1.82.46.00.1-1.61.02.5
Pavlov. Cond. index score2.12.66.7-0.3-1.70.92.6
Pavlov. Cond. latency score2.02.56.5-0.4-1.70.72.5
Pavlov. Cond. lever contacts2.63.66.7-1.5-2.60.02.3
Pavlov. Cond. magazine entry number2.53.17.4-0.61.4-1.6-2.7
Pavlov. Cond. intertrial magazine entries1.11.52.9-1.5-0.9-1.7-0.2
Pavlov. Cond. lever-magazine prob. diff.2.22.87.0-0.1-1.71.12.6
Pavlov. Cond. response bias2.12.96.3-0.6-2.10.62.5
Time in closed arm before self-admin0.70.81.60.91.30.6-0.8
Time in closed arm after self-admin2.82.86.50.92.60.2-2.0
Time in open arm before self-admin0.10.10.30.40.3-0.2-0.6
Time in open arm after self-admin0.40.51.1-0.1-0.80.31.1
Bone: periosteal estimation1.42.85.3-2.3-1.0-2.2-0.3
Bone: periosteal perimeter3.45.69.7-2.40.4-3.1-2.6
Bone: post-yield work0.20.30.5-0.1-0.70.70.5
Progressive ratio test 1 active lever presses0.50.51.0-0.9-1.0-0.1-0.1
Progressive ratio test 1 breakpoint0.50.61.2-1.0-1.1-0.1-0.1
Progressive ratio test 1 inactive lever presses2.42.65.1-2.3-1.6-1.60.2
Progressive ratio test 2 active lever presses0.20.30.6-0.8-0.6-0.1-0.1
Progressive ratio test 2 breakpoint0.30.30.8-0.9-0.7-0.30.0
Progressive ratio test 2 inactive lever presses0.30.41.1-1.0-0.4-0.6-0.1
Incentive Sensitization - Responses0.10.10.2-0.10.2-0.1-0.5
Incentive Sensitization - Breakpoint0.10.10.2-0.10.2-0.1-0.5
Sum of active levers in priming session hrs 5-60.60.61.6-0.4-1.30.00.7
Progressive ratio0.40.41.10.6-0.21.10.5
Food seeking constrained by brief footshock0.10.10.30.40.10.60.3
Seeking ratio, punishment vs. effort0.10.10.4-0.30.0-0.60.0
Retroperitoneal fat weight3.712.223.2-4.8-3.3-3.71.0
Reaction time number correct4.66.614.6-0.9-3.11.23.8
Reaction time mean minus median0.60.81.50.61.20.1-1.2
Reaction time mean minus median AUC0.40.61.0-0.30.7-0.8-1.0
Reaction time num false alarms0.20.20.30.50.50.60.2
Reaction time num false alarms AUC0.30.50.70.80.70.80.3
Reaction time trials correct on left4.66.614.6-0.9-3.11.23.8
Reaction time trials on left4.76.815.1-0.9-3.11.23.9
Reaction time mean0.10.20.4-0.3-0.5-0.30.6
Reaction time mean AUC0.30.40.7-0.3-0.8-0.20.8
Median of all reaction times0.40.51.2-0.4-0.8-0.31.1
Reaction time omissions0.10.20.4-0.5-0.1-0.70.3
Reaction time false alarm rate1.72.34.91.22.20.2-1.7
Reaction time premature initiation rate1.01.32.61.40.61.60.5
Reaction time premature initiations2.33.36.90.7-1.22.12.6
Std. dev. reaction times0.30.40.80.90.50.70.3
Reaction time trials completed4.76.815.1-0.9-3.11.23.9
Reaction time trials AUC4.97.015.4-1.0-3.21.23.9
Run reversals in cocaine runway, females1.00.92.80.5-0.40.71.7
Run reversals in cocaine runway, males0.30.31.0-0.4-0.0-0.1-1.0
Latency to leave start box in cocaine runway0.80.81.71.2-0.11.30.1
Latency to leave start box in cocaine runway, F0.30.40.50.4-0.50.70.7
Latency to leave start box in cocaine runway, M0.70.71.50.9-0.11.2-0.6
Std. dev. time between licks in bursts1.51.84.5-1.0-2.1-0.21.3
Total sessions with >9 infusions0.40.50.70.80.80.7-0.2
Short access day 1 total inactive lever presses0.10.20.3-0.6-0.1-0.4-0.5
Short access day 10 total inactive lever presses2.42.64.8-2.2-1.0-2.2-0.0
Short access day 1 total infusions0.80.91.31.01.21.1-0.2
Short access day 10 total infusions0.30.30.7-0.8-0.5-0.2-0.4
Short access total infusions0.10.10.30.1-0.00.5-0.1
Short access day 1 locomotion0.70.71.40.41.20.5-1.0
Short access day 10 total locomotion0.50.61.10.51.00.2-1.0
Short access total locomotion1.21.32.10.81.50.8-1.3
One hour access (0.3 mA shock)1.11.32.7-1.3-1.7-0.30.8
Compulsive drug intake0.80.81.4-1.2-1.1-0.60.5
One hour access (shock baseline)0.10.10.1-0.3-0.30.1-0.2
Social response proportion0.20.20.7-0.1-0.10.00.8
Social responses0.30.40.6-0.6-0.3-0.70.8
Social time0.30.40.9-0.2-0.50.50.9
Soleus weight1.02.95.9-2.4-1.9-1.4-0.6
Bone: stiffness0.50.82.4-0.8-0.0-1.5-0.5
Tibialis anterior weight0.10.20.40.1-0.40.60.3
Time to tail flick, vehicle, before self-admin0.10.10.2-0.3-0.3-0.3-0.4
Time to tail flick, vehicle, after self-admin1.61.72.51.51.61.1-0.8
Time to tail flick, test, before self-admin0.10.10.20.10.50.2-0.4
Time to tail flick, test, after self-admin0.20.20.6-0.20.5-0.80.2
Delta time to tail flick, vehicle, before/after SA0.20.20.50.1-0.30.50.7
Delta time to tail flick, test, before/after SA0.20.20.30.40.6-0.30.4
Tibia length7.621.550.4-5.10.0-7.1-3.1
Ambulatory time before self-admin1.81.94.1-1.7-0.6-2.0-0.0
Ambulatory time after self-admin1.41.53.5-0.9-1.9-0.31.3
Bone: tissue strength2.22.14.8-1.6-2.2-0.40.9
Total heroin consumption0.10.10.6-0.10.1-0.7-0.0
Bone: trabecular number0.10.10.20.40.10.4-0.2
Bone: trabecular spacing2.83.68.1-1.2-2.1-0.82.8
Bone: trabecular thickness0.70.83.00.00.5-0.1-1.7
Bone: trabecular tissue density0.60.82.01.01.40.2-0.6
Water consumed over 24 hours0.10.20.60.00.1-0.0-0.8
Number of responses in last shaping day1.01.11.7-1.1-0.2-1.2-1.3