Car9

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Car9 0.05 0.04 4.6e-05 0.05 0.03 0.04 0.04 2.1e-06 8.9e-05 4.0e-05 1.0e-05
2 Brain gene expression Car9 0.11 0.06 1.3e-12 0.12 0.12 0.12 0.12 3.3e-11 6.3e-11 2.1e-11 5.3e-11
3 Liver gene expression Car9 0.13 0.07 5.3e-10 0.03 0.07 0.07 0.07 1.1e-04 2.4e-08 3.1e-08 6.5e-08
4 Adipose gene expression Car9 0.25 0.11 0.0e+00 0.17 0.17 0.16 0.17 2.0e-18 3.4e-18 1.1e-17 3.1e-18

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.32.41.51.6-0.6-0.4
Area under the delay curve0.30.40.6-0.5-0.7-0.30.8
BMI with tail1.54.910.72.63.3-1.1-0.9
BMI without tail4.49.116.14.03.7-2.50.7
Body weight2.510.417.14.14.1-2.70.5
Weight adjusted by age0.80.92.00.60.1-1.41.2
Bone surface0.61.11.71.31.1-1.10.5
Bone volume0.50.81.41.21.1-0.70.1
Breakpoint value in progressive ratio session1.31.43.2-0.1-0.7-1.41.8
Number of licking bursts2.73.15.82.42.4-0.9-0.5
Context. condit. distance diff. score0.10.10.2-0.4-0.20.4-0.4
Locomotion velocity, session 15.15.511.71.10.1-3.13.4
Locomotion distance, session 11.51.93.70.90.3-1.71.9
Locomotion velocity, session 21.51.84.31.52.1-0.4-0.6
Locomotion distance, session 22.02.84.22.01.3-1.81.4
Locomotion velocity, session 31.01.22.70.4-0.1-1.31.6
Locomotion distance, session 32.62.94.11.81.7-2.01.2
Stereotopy head waving bouts, day 30.91.12.5-0.1-1.0-1.01.6
Stereotopy head waving duration, day 30.50.61.2-0.6-1.1-0.30.9
Locomotion velocity, session 70.00.00.1-0.3-0.20.2-0.1
Locomotion distance, session 70.30.30.50.70.5-0.70.5
Stereotopy head waving bouts, day 71.92.12.81.71.6-1.60.7
Stereotopy head waving duration, day 70.50.71.00.90.6-1.00.7
Locomotion velocity, session 80.50.61.60.4-0.4-0.81.3
Locomotion distance, session 80.50.81.50.70.1-1.11.2
Degree of sensitization distance1.11.11.6-1.1-1.31.2-0.5
Degree of sensitization stereotypy1.01.11.81.21.3-1.10.3
Conditioned locomotion0.70.81.8-0.0-0.2-1.21.3
Cocaine response after cond. corrected1.82.03.3-1.1-1.8-0.61.8
Cocaine response after cond. not corrected2.02.24.3-0.9-1.8-0.82.1
Cocaine response before conditioning0.40.51.31.10.8-0.3-0.2
Saline control response1.51.93.01.40.5-1.71.6
Bone: connectivity density0.40.71.70.91.3-0.2-0.6
Bone: cortical apparent density1.21.53.4-0.50.11.6-1.9
Bone: cortical area1.42.14.11.82.0-0.3-0.8
Bone: cortical porosity0.30.40.7-0.8-0.70.5-0.1
Bone: cortical porosity0.00.00.0-0.10.0-0.10.0
Bone: cortical thickness0.81.32.20.91.40.5-1.5
Bone: cortical thickness0.30.30.6-0.3-0.20.8-0.8
Bone: cortical tissue density1.11.43.0-0.5-0.01.5-1.7
Condit. Reinf. active minus inactive responses0.30.40.80.70.9-0.0-0.4
Condit. Reinf. active-inactive response ratio0.60.60.8-0.9-0.70.9-0.6
Condit. Reinf. active responses1.72.14.41.92.1-0.5-0.5
Condit. Reinf. inactive responses1.92.34.81.92.2-0.4-0.8
Incentive salience index mean2.93.66.32.42.5-1.40.2
Condit. Reinf. lever presses7.910.516.64.13.8-3.01.4
Condit. Reinf. active minus inactive responses0.40.61.11.01.0-0.3-0.2
Condit. Reinf. active-inactive response ratio0.20.20.30.30.60.2-0.5
Condit. Reinf. active responses1.52.14.02.01.9-1.00.1
Condit. Reinf. inactive responses1.82.34.32.02.1-0.6-0.5
Condit. Reinf. lever presses1.52.14.21.72.10.0-1.1
Condit. Reinf. lever reinforcers received1.82.54.72.22.1-1.00.1
Conditioned reinforcement - actives0.20.20.50.30.7-0.2-0.2
Conditioned reinforcement - inactives0.00.00.1-0.3-0.1-0.10.3
Conditioned locomotion0.40.41.00.51.0-0.70.2
Patch foraging indifference point 0 sec2.74.48.81.00.5-3.02.7
Patch foraging indifference point AUC6.27.112.13.53.3-2.30.7
Delay disc. indifference point, 0s delay0.80.92.0-1.1-1.40.10.7
Delay disc. indifference point, 16s delay1.21.22.2-0.7-1.2-0.81.5
Delay disc. indifference point, 2s delay0.10.10.3-0.00.20.4-0.6
Delay disc. indifference point, 24s delay0.10.10.2-0.4-0.50.3-0.0
Delay disc. indifference point, 4s delay0.00.00.1-0.3-0.30.10.1
Delay disc. indifference point, 8s delay0.00.00.00.10.2-0.10.2
Indifference point function ln k1.82.54.5-2.1-2.11.1-0.1
Indifference point function log k1.82.54.5-2.1-2.11.1-0.1
Patch foraging total patch changes 0 sec2.84.69.11.30.9-3.02.6
Patch foraging total patch changes 12 sec1.92.44.11.82.0-1.50.3
Patch foraging total patch changes 18 sec0.91.21.71.31.0-1.20.8
Patch foraging total patch changes 24 sec2.93.64.82.11.9-2.21.1
Patch foraging total patch changes 6 sec4.05.99.22.42.2-3.02.0
Patch foraging time to switch 0 sec3.14.76.5-2.5-2.22.4-1.3
Patch foraging water rate 0 sec2.64.27.02.01.8-2.61.5
Patch foraging water rate 12 sec0.20.30.70.3-0.1-0.80.7
Patch foraging water rate 18 sec0.30.40.90.51.0-0.3-0.5
Patch foraging water rate 24 sec0.50.71.8-0.20.50.8-1.4
Patch foraging water rate 6 sec0.40.61.01.00.8-0.80.3
Seeking ratio, delayed vs. immediate footshock2.52.97.31.72.7-1.0-0.3
Distance traveled before self-admin4.04.26.82.61.9-2.31.2
Distance traveled after self-admin0.30.40.70.70.80.3-0.6
Extensor digitorum longus weight3.413.322.44.74.6-3.10.6
Bone: elastic displacement3.84.36.7-2.6-2.02.2-1.4
Bone: elastic work3.84.97.8-1.9-0.82.8-2.7
Bone: endosteal estimation1.02.13.11.81.1-1.61.2
Bone: endosteal perimeter1.32.73.71.81.2-1.91.5
Epididymis fat weight0.30.81.31.10.8-0.90.5
Delta time in closed arm before/after self-admin1.81.73.51.41.90.2-1.2
Delta time in open arm before/after self-admin0.40.40.6-0.6-0.7-0.30.8
Diff in mean of infusions in LGA sessions0.10.10.2-0.3-0.00.4-0.3
Delay discount exponential model param0.30.30.60.40.60.3-0.8
Extinction: sum of active levers before priming1.21.22.3-1.5-1.30.80.1
Active lever presses in extinction session 60.10.10.3-0.6-0.3-0.10.4
Bone: final force0.71.12.61.61.3-0.5-0.0
Bone: final moment0.50.81.81.31.2-0.2-0.3
Food consumed during 24 hour testing period0.70.91.51.20.9-0.90.7
Glucose0.91.42.21.51.4-1.10.4
Heart weight0.71.01.31.11.0-1.00.7
Delay discount hyperbolic model param0.20.30.50.40.50.3-0.7
Intermittent access intake day 1-15 change0.80.81.70.40.90.7-1.3
Intermittent access intake escalation0.80.81.20.81.10.4-1.1
Intermittent access intake escalation 21.31.32.60.61.20.8-1.6
Intermitt. access day 1 inactive lever presses0.50.61.00.91.0-0.70.2
Intermitt. access day 15 inactive lever presses0.30.30.60.10.0-0.80.7
Intermitt. access escalation Index1.41.21.81.40.5-1.31.0
Intermittent access day 1 total infusions0.70.81.7-0.4-0.4-1.01.3
Intermittent access day 15 total infusions0.40.41.00.61.0-0.70.1
Intermittent access terminal intake (last 3 days)0.60.61.20.71.1-0.80.3
Intermittent access total infusions0.91.01.50.91.2-1.20.6
Intermittent access day 1 locomotion0.50.51.1-0.7-0.5-0.61.0
Intermittent access day 15 total locomotion0.30.31.0-1.0-0.4-0.10.3
Intermittent access total locomotion0.20.20.8-0.90.00.3-0.2
Intermittent access standard deviation0.20.20.60.30.80.1-0.5
Left kidney weight0.72.03.01.41.1-1.71.3
Right kidney weight0.10.41.00.30.1-0.61.0
Cocaine induced anxiety0.91.12.6-1.2-1.60.60.1
Post-drug Anxiety0.20.20.60.8-0.1-0.40.3
Baseline Anxiety1.11.22.61.31.60.0-0.6
Tail length2.16.311.63.42.7-2.21.2
Length with tail0.93.24.62.11.4-2.01.4
Length without tail0.30.61.2-1.1-1.10.10.3
Times rat made contact with spout0.30.30.60.50.70.2-0.8
Lifetime Intake1.71.93.51.01.1-1.91.4
Liver weight, left0.20.31.01.00.3-0.20.1
Liver weight, right0.10.10.4-0.1-0.7-0.10.4
Locomotor activity0.00.00.00.10.2-0.00.0
Locomotor testing distance0.30.51.40.1-0.4-0.81.2
Locomotor testing rearing0.61.01.51.20.7-1.00.8
Locomotion in novel chamber0.30.40.8-0.20.40.8-0.9
Locomotion in novel chamber post-restriction1.51.82.81.21.70.7-1.6
Fecal boli incidents, locomotor time 10.70.71.2-1.1-0.71.0-0.6
Change in fecal boli incidents, locomotor task1.71.62.61.40.7-1.61.2
Time >=10cm from walls, locomotor time 10.60.61.10.3-0.4-1.01.0
Bouts of movement, locomotor time 11.41.52.6-1.6-1.41.1-0.3
Total resting periods, locomotor time 12.12.43.6-1.9-1.61.6-0.8
Rest time, locomotor task time 14.24.78.4-1.8-0.92.9-2.5
Distance moved, locomotor task time 13.43.76.31.91.1-2.51.9
Vertical activity count, locomotor time 13.33.56.01.60.3-2.52.3
Time >=10cm from walls, locomotor time 20.10.10.10.40.1-0.40.3
Bouts of movement, locomotor time 20.50.51.10.81.1-0.50.1
Total resting periods, locomotor time 20.20.20.60.50.8-0.2-0.1
Rest time, locomotor task time 20.80.91.3-1.1-1.01.0-0.6
Distance moved, locomotor task time 20.30.30.50.50.70.4-0.6
Vertical activity count, locomotor time 20.30.40.70.90.5-0.50.5
Light reinforcement 12.95.49.61.80.3-2.93.1
Light reinforcement 24.05.411.61.2-0.5-2.93.4
Bone: marrow area0.91.93.21.81.3-1.51.0
Bone: maximum diameter1.32.44.62.12.0-1.0-0.1
Bone: maximum force1.72.95.82.42.3-0.8-0.2
Bone: maximum moment1.32.24.22.12.0-0.4-0.5
Mean time between licks in bursts0.50.71.1-0.7-1.11.0-0.3
Mean num. licks in bursts1.41.73.2-1.8-1.61.0-0.2
Cd content in liver0.60.60.90.90.90.4-0.8
Co content in liver1.01.23.1-1.0-1.80.10.7
Cu content in liver1.51.82.6-1.3-1.41.6-1.1
Fe content in liver1.51.84.20.7-0.5-1.52.0
K content in liver0.40.40.7-0.3-0.8-0.30.8
Mg content in liver0.30.30.7-0.7-0.80.10.3
Mn content in liver0.30.30.70.20.50.6-0.8
Na content in liver1.41.42.9-1.3-1.71.1-0.1
Rb content in liver2.73.36.8-2.3-2.61.10.3
Se content in liver1.01.22.81.31.70.1-0.8
Sr content in liver0.30.30.60.70.8-0.2-0.1
Zn content in liver0.40.40.90.10.50.7-0.9
Bone: minimum diameter0.10.10.2-0.20.10.4-0.5
Time in familiar zone, hab. session 13.12.96.4-0.90.22.1-2.5
Time in novel zone, hab. session 12.72.75.1-0.8-2.0-0.92.3
Total zone transitions, hab. session 10.00.00.00.10.10.1-0.1
Total locomotion distance, hab. session 10.71.02.00.51.00.9-1.4
Locomotion velocity, hab. session 11.11.63.21.31.80.2-1.1
Time in familiar zone, hab. session 21.92.03.4-1.1-0.51.8-1.7
Time in novel zone, hab. session 21.71.73.1-0.8-1.5-0.91.8
Total zone transitions, hab. session 20.81.01.41.10.7-1.21.1
Total locomotion distance, hab. session 20.50.71.41.11.2-0.50.0
Locomotion velocity, hab. session 20.70.91.91.21.4-0.5-0.1
Novel to familiar place preference ratio2.32.44.9-1.7-2.2-0.11.3
Novelty place preference2.93.06.3-2.1-2.50.21.1
Time in novel zone, NPP test3.63.77.9-2.3-2.80.31.2
Total zone transitions, NPP test1.11.52.11.30.7-1.41.4
Total locomotion distance, NPP test2.02.73.61.91.5-1.91.3
Locomotion velocity, NPP test2.23.14.32.11.9-1.91.0
Intraocular pressure2.33.24.62.11.6-2.11.1
Delta distance traveled before/after self-admin0.91.01.6-1.0-0.91.3-0.7
Delta ambulatory time before/after self-admin2.02.23.0-1.7-1.51.7-0.8
Parametrial fat weight0.20.40.60.70.3-0.80.6
Pavlov. Cond. lever latency5.46.911.7-3.4-3.22.2-0.8
Pavlov. Cond. magazine entry latency0.20.30.70.70.8-0.0-0.2
Pavlov. Cond. change in total contacts2.02.13.51.91.8-1.30.5
Pavlov. Cond. index score2.02.64.72.22.2-0.90.0
Pavlov. Cond. latency score1.92.54.52.12.1-1.00.1
Pavlov. Cond. lever contacts3.94.67.72.72.8-1.70.5
Pavlov. Cond. magazine entry number0.50.61.2-1.0-1.10.20.2
Pavlov. Cond. intertrial magazine entries0.10.10.30.50.5-0.1-0.2
Pavlov. Cond. lever-magazine prob. diff.1.82.24.62.02.1-0.6-0.3
Pavlov. Cond. response bias2.12.64.62.12.1-1.10.2
Pavlov. Cond. lever latency1.72.34.5-1.8-2.1-0.01.2
Pavlov. Cond. magazine entry latency0.60.61.2-0.7-0.81.1-0.6
Pavlov. Cond. change in total contacts1.31.83.70.71.11.2-1.9
Pavlov. Cond. index score0.60.81.80.30.51.0-1.3
Pavlov. Cond. latency score0.81.02.20.40.81.0-1.5
Pavlov. Cond. lever contacts0.81.12.21.31.5-0.0-0.8
Pavlov. Cond. magazine entry number1.01.22.70.1-0.3-1.41.6
Pavlov. Cond. intertrial magazine entries0.40.60.80.80.8-0.90.5
Pavlov. Cond. lever-magazine prob. diff.0.70.92.00.30.51.1-1.4
Pavlov. Cond. response bias0.50.71.00.80.90.5-1.0
Time in closed arm before self-admin1.41.63.3-1.8-1.60.9-0.1
Time in closed arm after self-admin0.40.40.6-0.5-0.30.8-0.8
Time in open arm before self-admin2.42.74.02.01.4-1.81.2
Time in open arm after self-admin1.92.03.01.41.2-1.71.3
Bone: periosteal estimation1.02.04.02.01.7-1.10.3
Bone: periosteal perimeter0.61.11.51.20.7-1.21.0
Bone: post-yield work1.31.82.71.61.1-1.41.1
Progressive ratio test 1 active lever presses1.21.32.80.40.5-1.71.4
Progressive ratio test 1 breakpoint1.31.42.90.60.7-1.71.4
Progressive ratio test 1 inactive lever presses2.42.74.90.90.3-2.22.2
Progressive ratio test 2 active lever presses1.01.02.30.10.0-1.41.5
Progressive ratio test 2 breakpoint0.80.92.1-0.2-0.2-1.21.4
Progressive ratio test 2 inactive lever presses0.30.30.60.40.5-0.80.5
Incentive Sensitization - Responses0.20.20.5-0.1-0.2-0.60.7
Incentive Sensitization - Breakpoint0.20.20.5-0.2-0.3-0.50.7
Sum of active levers in priming session hrs 5-61.81.83.3-1.7-1.80.10.9
Progressive ratio0.00.00.1-0.1-0.0-0.10.3
Food seeking constrained by brief footshock7.59.312.63.52.9-3.52.0
Seeking ratio, punishment vs. effort1.61.93.21.81.3-1.50.6
Retroperitoneal fat weight0.10.50.7-0.8-0.40.8-0.7
Reaction time number correct0.30.50.80.60.3-0.90.8
Reaction time mean minus median2.12.86.50.31.21.8-2.6
Reaction time mean minus median AUC1.51.93.40.91.51.0-1.8
Reaction time num false alarms0.20.30.6-0.00.50.6-0.8
Reaction time num false alarms AUC0.30.41.00.61.0-0.2-0.1
Reaction time trials correct on left0.30.50.80.60.3-0.90.8
Reaction time trials on left0.20.40.60.50.2-0.80.7
Reaction time mean2.94.17.6-1.5-1.02.8-2.3
Reaction time mean AUC3.34.48.1-1.7-1.02.9-2.4
Median of all reaction times3.24.46.8-2.1-1.92.6-1.6
Reaction time omissions1.31.82.6-1.6-1.41.4-0.7
Reaction time false alarm rate0.20.30.5-0.30.20.7-0.7
Reaction time premature initiation rate2.53.46.0-2.4-1.61.8-1.3
Reaction time premature initiations1.31.83.6-1.9-1.31.2-0.8
Std. dev. reaction times2.23.16.7-0.60.22.3-2.6
Reaction time trials completed0.20.40.60.50.2-0.80.7
Reaction time trials AUC0.20.30.60.50.2-0.80.7
Run reversals in cocaine runway, females0.40.40.80.20.30.8-0.9
Run reversals in cocaine runway, males0.10.10.1-0.40.10.2-0.2
Latency to leave start box in cocaine runway0.40.40.90.81.0-0.2-0.4
Latency to leave start box in cocaine runway, F0.00.00.0-0.00.0-0.20.2
Latency to leave start box in cocaine runway, M1.11.01.71.30.9-1.10.6
Std. dev. time between licks in bursts0.30.30.5-0.7-0.60.7-0.2
Total sessions with >9 infusions1.71.94.20.2-0.1-1.82.0
Short access day 1 total inactive lever presses2.22.43.61.61.5-1.91.1
Short access day 10 total inactive lever presses0.10.10.20.40.2-0.2-0.1
Short access day 1 total infusions3.13.36.01.30.9-2.42.2
Short access day 10 total infusions1.82.03.80.90.7-2.01.7
Short access total infusions2.02.34.50.60.3-2.02.1
Short access day 1 locomotion0.50.51.5-0.2-0.1-0.71.2
Short access day 10 total locomotion0.60.71.1-1.0-0.31.0-0.7
Short access total locomotion0.60.61.30.30.3-1.01.1
One hour access (0.3 mA shock)1.01.22.01.00.8-1.41.0
Compulsive drug intake0.30.30.60.80.6-0.50.2
One hour access (shock baseline)1.01.22.40.60.7-1.61.2
Social response proportion2.72.94.4-1.7-1.72.1-1.2
Social responses0.30.40.80.90.8-0.2-0.0
Social time0.20.30.7-0.2-0.80.60.1
Soleus weight1.13.17.60.5-1.0-1.92.8
Bone: stiffness2.23.57.42.72.4-0.9-0.1
Tibialis anterior weight5.418.432.05.74.7-4.11.6
Time to tail flick, vehicle, before self-admin0.80.81.7-1.3-0.90.8-0.3
Time to tail flick, vehicle, after self-admin0.00.00.1-0.1-0.0-0.30.2
Time to tail flick, test, before self-admin0.20.20.30.50.6-0.1-0.4
Time to tail flick, test, after self-admin0.70.71.40.61.20.3-1.0
Delta time to tail flick, vehicle, before/after SA0.10.10.20.50.2-0.20.1
Delta time to tail flick, test, before/after SA0.10.10.1-0.40.00.3-0.3
Tibia length0.51.33.30.5-0.8-1.01.8
Ambulatory time before self-admin3.94.05.72.31.7-2.41.5
Ambulatory time after self-admin0.10.10.20.50.4-0.30.2
Bone: tissue strength0.20.10.30.40.10.5-0.4
Total heroin consumption0.70.81.7-0.5-0.8-0.81.3
Bone: trabecular number0.81.22.61.31.6-0.2-0.7
Bone: trabecular spacing0.30.30.8-0.20.10.7-0.9
Bone: trabecular thickness0.10.10.2-0.4-0.20.3-0.2
Bone: trabecular tissue density1.42.04.62.11.6-0.90.3
Water consumed over 24 hours0.50.61.21.01.1-0.5-0.2
Number of responses in last shaping day2.62.76.10.6-0.3-2.12.5