Cabp7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Cabp7 0.07 0.04 4.5e-08 0.02 0.07 0.06 0.06 2.7e-03 7.5e-08 6.2e-07 1.1e-06
2 IL gene expression Cabp7 0.25 0.16 8.5e-04 0.14 0.14 0.12 0.12 3.0e-04 3.5e-04 8.4e-04 6.6e-04
3 NAcc gene expression Cabp7 0.03 0.02 5.0e-03 0 0.01 0.01 0.01 7.5e-02 1.4e-02 1.2e-02 2.6e-02
4 Brain gene expression Cabp7 0.2 0.1 5.6e-17 0.18 0.18 0.19 0.19 1.5e-16 1.5e-16 1.7e-17 1.9e-17

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.21.8-1.11.41.20.6
Area under the delay curve0.60.62.21.5-0.20.20.1
BMI with tail0.00.00.10.1-0.2-0.2-0.0
BMI without tail0.71.41.8-0.91.31.31.2
Body weight0.20.81.21.10.50.91.0
Weight adjusted by age0.91.01.5-0.11.01.21.2
Bone surface0.10.20.30.00.50.6-0.2
Bone volume0.20.30.7-0.20.70.80.1
Breakpoint value in progressive ratio session0.30.31.01.0-0.30.1-0.0
Number of licking bursts0.50.50.70.80.70.90.6
Context. condit. distance diff. score0.50.62.1-1.4-0.0-0.3-0.2
Locomotion velocity, session 13.33.64.71.5-2.0-2.2-1.8
Locomotion distance, session 10.70.81.7-1.30.70.70.9
Locomotion velocity, session 23.43.94.71.4-2.2-2.1-2.1
Locomotion distance, session 20.60.81.2-0.5-0.9-1.1-1.0
Locomotion velocity, session 30.60.72.7-1.60.50.30.1
Locomotion distance, session 30.10.10.20.0-0.4-0.1-0.5
Stereotopy head waving bouts, day 30.20.21.0-1.00.00.10.0
Stereotopy head waving duration, day 30.20.30.8-0.9-0.2-0.4-0.2
Locomotion velocity, session 70.20.20.20.4-0.5-0.3-0.5
Locomotion distance, session 70.30.40.7-0.1-0.6-0.7-0.8
Stereotopy head waving bouts, day 70.00.00.2-0.40.20.00.0
Stereotopy head waving duration, day 70.30.40.5-0.60.70.70.5
Locomotion velocity, session 81.72.02.80.1-1.6-1.7-1.7
Locomotion distance, session 80.91.44.6-2.1-0.3-0.8-0.5
Degree of sensitization distance0.40.40.9-0.4-0.4-0.9-0.5
Degree of sensitization stereotypy0.20.20.40.00.60.50.4
Conditioned locomotion1.41.62.7-1.71.21.01.2
Cocaine response after cond. corrected0.30.30.60.80.40.50.5
Cocaine response after cond. not corrected0.70.71.20.50.71.01.1
Cocaine response before conditioning0.20.30.5-0.70.20.40.5
Saline control response0.50.71.1-0.2-0.8-1.0-0.9
Bone: connectivity density0.50.81.3-1.11.10.90.3
Bone: cortical apparent density0.10.10.20.40.20.40.3
Bone: cortical area0.30.51.31.10.20.70.5
Bone: cortical porosity0.60.71.0-0.41.00.90.9
Bone: cortical porosity0.40.40.6-0.60.80.60.6
Bone: cortical thickness0.71.22.10.21.01.51.2
Bone: cortical thickness2.12.42.9-1.61.71.51.3
Bone: cortical tissue density0.10.10.30.50.10.30.2
Condit. Reinf. active minus inactive responses1.92.12.31.5-1.4-1.4-1.4
Condit. Reinf. active-inactive response ratio5.55.97.51.9-2.5-2.7-2.5
Condit. Reinf. active responses0.70.80.90.9-0.9-0.9-0.9
Condit. Reinf. inactive responses0.80.91.4-0.60.91.20.9
Incentive salience index mean1.01.21.81.3-1.2-0.9-1.0
Condit. Reinf. lever presses0.00.00.00.2-0.20.10.0
Condit. Reinf. active minus inactive responses0.10.10.2-0.50.1-0.3-0.1
Condit. Reinf. active-inactive response ratio0.00.00.10.10.0-0.3-0.2
Condit. Reinf. active responses0.20.20.5-0.4-0.3-0.7-0.2
Condit. Reinf. inactive responses0.30.30.8-0.3-0.6-0.9-0.4
Condit. Reinf. lever presses0.10.20.6-0.80.2-0.10.2
Condit. Reinf. lever reinforcers received0.10.20.4-0.4-0.3-0.6-0.2
Conditioned reinforcement - actives0.50.50.70.6-0.8-0.6-0.8
Conditioned reinforcement - inactives0.10.20.40.6-0.3-0.4-0.2
Conditioned locomotion0.00.00.10.00.30.20.3
Patch foraging indifference point 0 sec0.20.30.70.80.30.60.4
Patch foraging indifference point AUC0.30.30.50.5-0.7-0.7-0.3
Delay disc. indifference point, 0s delay0.20.30.40.60.30.60.5
Delay disc. indifference point, 16s delay2.02.14.52.1-1.3-0.9-1.1
Delay disc. indifference point, 2s delay1.51.62.4-0.11.31.51.6
Delay disc. indifference point, 24s delay0.90.91.91.4-0.9-0.6-0.8
Delay disc. indifference point, 4s delay0.70.71.00.70.71.01.0
Delay disc. indifference point, 8s delay0.40.41.21.1-0.4-0.3-0.3
Indifference point function ln k0.60.81.1-0.91.01.10.8
Indifference point function log k0.60.81.1-0.91.01.10.8
Patch foraging total patch changes 0 sec0.20.31.01.0-0.00.30.2
Patch foraging total patch changes 12 sec0.10.20.60.8-0.2-0.00.4
Patch foraging total patch changes 18 sec2.02.54.22.0-1.5-1.4-1.3
Patch foraging total patch changes 24 sec0.70.81.40.1-0.8-1.2-1.2
Patch foraging total patch changes 6 sec0.30.41.31.2-0.5-0.3-0.3
Patch foraging time to switch 0 sec0.10.10.2-0.50.40.10.3
Patch foraging water rate 0 sec0.50.81.91.4-0.9-0.4-0.7
Patch foraging water rate 12 sec0.00.10.3-0.10.10.1-0.5
Patch foraging water rate 18 sec3.04.14.9-1.62.22.22.0
Patch foraging water rate 24 sec0.60.91.10.7-0.9-1.0-1.0
Patch foraging water rate 6 sec0.10.20.4-0.10.50.60.4
Seeking ratio, delayed vs. immediate footshock0.00.00.10.0-0.2-0.3-0.2
Distance traveled before self-admin1.01.11.5-0.41.11.21.1
Distance traveled after self-admin0.80.91.3-0.51.01.11.1
Extensor digitorum longus weight0.41.53.31.80.61.20.9
Bone: elastic displacement1.41.51.8-1.31.31.11.1
Bone: elastic work1.92.43.0-1.11.71.71.6
Bone: endosteal estimation0.00.00.10.30.10.20.0
Bone: endosteal perimeter0.10.31.01.0-0.2-0.00.2
Epididymis fat weight0.71.62.2-1.51.21.21.2
Delta time in closed arm before/after self-admin1.31.34.1-2.00.80.20.4
Delta time in open arm before/after self-admin2.12.06.32.5-1.1-0.4-0.7
Diff in mean of infusions in LGA sessions0.40.40.9-0.50.60.41.0
Delay discount exponential model param0.50.51.9-1.40.1-0.3-0.2
Extinction: sum of active levers before priming1.41.41.71.2-1.3-1.0-1.2
Active lever presses in extinction session 60.30.30.5-0.00.50.70.6
Bone: final force0.00.10.10.30.20.3-0.0
Bone: final moment0.10.20.30.30.40.60.2
Food consumed during 24 hour testing period2.12.63.71.9-1.7-1.2-1.5
Glucose21.732.750.17.1-5.6-4.9-5.0
Heart weight0.81.22.20.2-1.0-1.2-1.5
Delay discount hyperbolic model param0.50.51.7-1.3-0.0-0.4-0.3
Intermittent access intake day 1-15 change2.01.92.31.2-1.5-1.3-1.5
Intermittent access intake escalation1.41.41.71.0-1.3-1.2-1.3
Intermittent access intake escalation 20.50.50.60.6-0.6-0.8-0.7
Intermitt. access day 1 inactive lever presses0.10.20.3-0.4-0.2-0.5-0.4
Intermitt. access day 15 inactive lever presses2.93.23.41.8-1.9-1.7-1.8
Intermitt. access escalation Index0.50.40.60.6-0.7-0.7-0.6
Intermittent access day 1 total infusions0.20.20.3-0.20.60.40.5
Intermittent access day 15 total infusions0.40.40.70.8-0.6-0.6-0.5
Intermittent access terminal intake (last 3 days)0.30.30.50.7-0.5-0.5-0.6
Intermittent access total infusions0.00.00.10.30.0-0.00.0
Intermittent access day 1 locomotion0.20.20.5-0.70.50.10.4
Intermittent access day 15 total locomotion0.60.61.01.0-0.7-0.7-0.6
Intermittent access total locomotion0.20.20.50.7-0.3-0.4-0.3
Intermittent access standard deviation0.20.20.6-0.80.1-0.3-0.1
Left kidney weight0.61.82.3-1.11.51.21.4
Right kidney weight2.05.56.9-2.42.62.02.3
Cocaine induced anxiety0.91.02.31.5-1.0-0.4-0.8
Post-drug Anxiety1.01.11.51.2-1.1-0.7-1.1
Baseline Anxiety0.50.50.80.4-0.8-0.8-0.9
Tail length1.75.17.5-0.32.52.72.6
Length with tail0.51.82.31.01.21.51.5
Length without tail0.61.33.11.8-1.0-0.8-0.6
Times rat made contact with spout3.84.45.21.7-2.3-2.2-2.3
Lifetime Intake0.10.10.10.10.30.30.3
Liver weight, left3.96.27.4-2.62.72.12.4
Liver weight, right2.74.57.5-2.72.11.61.9
Locomotor activity0.71.12.21.5-1.1-1.0-0.5
Locomotor testing distance0.91.52.9-0.51.21.21.7
Locomotor testing rearing0.30.51.61.3-0.5-0.20.1
Locomotion in novel chamber1.21.54.2-2.11.10.50.7
Locomotion in novel chamber post-restriction1.61.93.2-0.2-1.2-1.7-1.8
Fecal boli incidents, locomotor time 10.10.10.2-0.1-0.3-0.3-0.4
Change in fecal boli incidents, locomotor task1.11.11.20.8-1.1-1.1-1.1
Time >=10cm from walls, locomotor time 10.00.00.10.1-0.1-0.3-0.1
Bouts of movement, locomotor time 12.12.32.41.5-1.5-1.5-1.5
Total resting periods, locomotor time 12.72.93.31.5-1.8-1.7-1.8
Rest time, locomotor task time 10.91.01.40.8-1.0-1.0-1.2
Distance moved, locomotor task time 11.21.32.5-0.51.21.11.6
Vertical activity count, locomotor time 10.50.51.0-0.20.70.61.0
Time >=10cm from walls, locomotor time 20.20.20.30.3-0.5-0.5-0.4
Bouts of movement, locomotor time 20.00.00.1-0.20.10.20.1
Total resting periods, locomotor time 20.00.00.0-0.0-0.10.0-0.2
Rest time, locomotor task time 20.10.10.2-0.0-0.3-0.3-0.5
Distance moved, locomotor task time 20.00.00.00.0-0.1-0.20.1
Vertical activity count, locomotor time 20.00.00.1-0.00.20.10.3
Light reinforcement 10.20.40.8-0.40.40.70.9
Light reinforcement 20.91.21.7-0.51.21.21.3
Bone: marrow area0.00.00.10.3-0.00.1-0.0
Bone: maximum diameter1.52.77.72.8-1.3-0.8-0.8
Bone: maximum force0.10.20.40.00.50.70.3
Bone: maximum moment0.30.40.9-0.00.70.90.6
Mean time between licks in bursts2.33.33.51.8-1.8-1.9-1.8
Mean num. licks in bursts2.93.54.90.4-2.2-2.2-2.0
Cd content in liver0.20.20.5-0.70.30.40.4
Co content in liver0.00.00.1-0.30.00.20.1
Cu content in liver0.10.10.30.6-0.1-0.1-0.2
Fe content in liver3.23.95.81.1-2.0-2.4-2.1
K content in liver1.91.93.3-0.61.21.81.5
Mg content in liver0.10.10.20.10.00.40.2
Mn content in liver1.92.23.2-1.11.31.81.6
Na content in liver2.12.35.12.2-1.4-0.9-1.1
Rb content in liver0.40.50.80.80.30.90.7
Se content in liver0.20.20.40.50.10.60.4
Sr content in liver1.81.62.71.7-1.2-1.1-1.0
Zn content in liver0.00.00.10.1-0.00.30.2
Bone: minimum diameter0.10.20.3-0.30.50.60.5
Time in familiar zone, hab. session 10.10.10.2-0.40.20.20.1
Time in novel zone, hab. session 10.30.30.40.10.60.60.7
Total zone transitions, hab. session 10.00.00.10.1-0.3-0.2-0.1
Total locomotion distance, hab. session 10.10.10.40.0-0.20.20.6
Locomotion velocity, hab. session 10.10.20.50.3-0.7-0.5-0.0
Time in familiar zone, hab. session 20.20.20.6-0.80.1-0.30.2
Time in novel zone, hab. session 20.20.20.70.9-0.10.4-0.1
Total zone transitions, hab. session 20.20.20.40.7-0.6-0.2-0.2
Total locomotion distance, hab. session 20.60.81.21.1-1.1-0.7-0.4
Locomotion velocity, hab. session 20.50.61.21.1-1.0-0.6-0.2
Novel to familiar place preference ratio1.51.52.41.5-1.3-1.1-1.0
Novelty place preference1.51.52.41.6-1.2-1.1-1.0
Time in novel zone, NPP test1.41.42.21.5-1.2-1.0-1.0
Total zone transitions, NPP test0.50.71.4-1.20.80.70.7
Total locomotion distance, NPP test0.10.20.4-0.50.20.20.7
Locomotion velocity, NPP test0.10.10.4-0.30.20.20.6
Intraocular pressure1.21.72.31.3-1.5-1.3-1.1
Delta distance traveled before/after self-admin0.10.10.1-0.1-0.3-0.3-0.3
Delta ambulatory time before/after self-admin0.10.10.2-0.4-0.2-0.4-0.2
Parametrial fat weight2.54.88.02.8-2.0-2.0-1.8
Pavlov. Cond. lever latency0.60.81.41.2-0.8-0.8-0.7
Pavlov. Cond. magazine entry latency0.40.52.0-1.40.40.2-0.0
Pavlov. Cond. change in total contacts0.20.30.50.7-0.4-0.1-0.7
Pavlov. Cond. index score0.60.72.5-1.60.50.40.1
Pavlov. Cond. latency score0.50.72.2-1.50.60.40.2
Pavlov. Cond. lever contacts0.30.31.2-1.10.30.30.1
Pavlov. Cond. magazine entry number0.40.51.51.20.10.20.7
Pavlov. Cond. intertrial magazine entries1.31.52.1-0.41.41.41.4
Pavlov. Cond. lever-magazine prob. diff.0.60.82.8-1.70.50.4-0.0
Pavlov. Cond. response bias0.30.41.4-1.20.20.3-0.3
Pavlov. Cond. lever latency1.42.03.00.51.31.71.7
Pavlov. Cond. magazine entry latency0.10.20.3-0.40.60.4-0.1
Pavlov. Cond. change in total contacts0.20.20.40.0-0.4-0.6-0.6
Pavlov. Cond. index score0.30.40.7-0.6-0.3-0.6-0.8
Pavlov. Cond. latency score0.20.30.5-0.7-0.1-0.5-0.7
Pavlov. Cond. lever contacts1.11.52.7-0.4-1.1-1.6-1.4
Pavlov. Cond. magazine entry number0.20.20.7-0.20.20.40.8
Pavlov. Cond. intertrial magazine entries0.10.10.20.2-0.5-0.4-0.0
Pavlov. Cond. lever-magazine prob. diff.0.20.30.5-0.7-0.1-0.4-0.6
Pavlov. Cond. response bias0.81.11.7-0.0-1.0-1.3-1.3
Time in closed arm before self-admin0.40.50.9-0.10.60.91.0
Time in closed arm after self-admin1.41.42.6-1.61.00.71.2
Time in open arm before self-admin0.30.30.9-0.9-0.0-0.4-0.5
Time in open arm after self-admin2.52.83.41.5-1.7-1.6-1.9
Bone: periosteal estimation0.10.30.70.80.20.50.3
Bone: periosteal perimeter0.30.41.51.2-0.00.30.4
Bone: post-yield work0.00.00.10.4-0.10.2-0.1
Progressive ratio test 1 active lever presses0.30.30.40.6-0.5-0.5-0.5
Progressive ratio test 1 breakpoint0.10.10.20.3-0.3-0.4-0.4
Progressive ratio test 1 inactive lever presses0.40.41.51.2-0.4-0.1-0.2
Progressive ratio test 2 active lever presses0.10.10.20.4-0.2-0.1-0.2
Progressive ratio test 2 breakpoint0.30.30.40.6-0.6-0.4-0.6
Progressive ratio test 2 inactive lever presses1.51.72.41.5-1.3-1.1-1.2
Incentive Sensitization - Responses0.20.20.40.6-0.5-0.4-0.5
Incentive Sensitization - Breakpoint0.20.20.30.5-0.5-0.4-0.4
Sum of active levers in priming session hrs 5-60.10.10.30.5-0.3-0.0-0.2
Progressive ratio0.20.30.5-0.40.50.70.5
Food seeking constrained by brief footshock2.42.94.2-0.31.92.02.0
Seeking ratio, punishment vs. effort0.20.20.40.20.60.40.7
Retroperitoneal fat weight0.20.50.90.4-0.9-1.0-0.5
Reaction time number correct0.50.71.00.6-1.0-0.8-1.0
Reaction time mean minus median0.91.12.10.1-1.1-1.5-1.1
Reaction time mean minus median AUC0.10.20.4-0.3-0.4-0.6-0.3
Reaction time num false alarms0.50.71.3-0.60.81.20.8
Reaction time num false alarms AUC1.21.72.6-0.91.21.61.3
Reaction time trials correct on left0.50.71.00.6-1.0-0.8-1.0
Reaction time trials on left0.50.71.00.5-0.9-0.8-1.0
Reaction time mean0.10.20.5-0.2-0.4-0.7-0.1
Reaction time mean AUC0.10.10.3-0.5-0.1-0.50.1
Median of all reaction times0.10.10.2-0.2-0.1-0.50.1
Reaction time omissions0.20.20.9-1.00.1-0.1-0.0
Reaction time false alarm rate2.12.94.0-1.21.82.01.8
Reaction time premature initiation rate1.62.25.3-2.31.20.91.1
Reaction time premature initiations0.50.72.4-1.50.40.30.4
Std. dev. reaction times0.60.91.80.1-1.0-1.4-0.8
Reaction time trials completed0.50.71.00.5-0.9-0.8-1.0
Reaction time trials AUC0.40.60.80.6-0.8-0.7-0.9
Run reversals in cocaine runway, females0.10.10.2-0.4-0.0-0.1-0.1
Run reversals in cocaine runway, males0.10.10.10.30.20.20.3
Latency to leave start box in cocaine runway0.50.50.8-0.40.80.60.9
Latency to leave start box in cocaine runway, F0.80.91.2-0.31.11.01.1
Latency to leave start box in cocaine runway, M0.00.00.1-0.3-0.1-0.30.0
Std. dev. time between licks in bursts0.10.10.20.1-0.1-0.3-0.4
Total sessions with >9 infusions0.30.30.4-0.50.60.60.6
Short access day 1 total inactive lever presses0.60.70.90.80.60.91.0
Short access day 10 total inactive lever presses0.20.20.5-0.70.50.10.4
Short access day 1 total infusions0.80.91.0-0.91.00.91.0
Short access day 10 total infusions0.50.60.7-0.60.90.60.8
Short access total infusions1.21.31.6-1.01.31.11.2
Short access day 1 locomotion2.93.14.1-2.01.81.61.6
Short access day 10 total locomotion0.70.81.1-1.10.90.60.8
Short access total locomotion2.52.64.9-2.21.61.01.4
One hour access (0.3 mA shock)0.00.00.10.3-0.1-0.1-0.2
Compulsive drug intake0.60.62.2-1.50.50.10.3
One hour access (shock baseline)0.60.61.61.3-0.7-0.4-0.6
Social response proportion3.53.84.62.2-2.1-1.8-1.7
Social responses2.93.84.92.2-2.1-1.7-1.7
Social time0.91.21.51.0-1.2-1.2-0.9
Soleus weight0.82.33.60.01.61.81.9
Bone: stiffness0.00.00.00.1-0.1-0.1-0.2
Tibialis anterior weight0.20.62.41.5-0.10.00.1
Time to tail flick, vehicle, before self-admin0.20.20.3-0.40.40.30.5
Time to tail flick, vehicle, after self-admin0.60.60.9-0.60.80.70.9
Time to tail flick, test, before self-admin0.10.10.4-0.60.20.10.2
Time to tail flick, test, after self-admin0.80.81.40.40.71.01.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.10.20.20.3
Delta time to tail flick, test, before/after SA0.20.20.80.9-0.20.00.0
Tibia length1.33.74.7-1.52.02.02.2
Ambulatory time before self-admin2.02.03.1-0.61.61.81.5
Ambulatory time after self-admin0.70.71.1-0.40.91.01.0
Bone: tissue strength0.10.10.10.4-0.1-0.2-0.3
Total heroin consumption0.00.00.00.2-0.00.10.1
Bone: trabecular number0.91.42.2-1.11.51.20.8
Bone: trabecular spacing0.70.91.91.4-1.1-0.7-0.3
Bone: trabecular thickness1.92.33.5-1.91.71.31.1
Bone: trabecular tissue density0.91.32.00.6-1.1-1.4-1.3
Water consumed over 24 hours1.82.12.81.7-1.5-1.2-1.4
Number of responses in last shaping day0.10.10.2-0.40.10.40.1