Cabp5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Cabp5 0.94 0.04 0.0e+00 0.31 0.36 0.36 0.36 1.7e-35 6.2e-41 7.9e-42 1.2e-41
2 Liver alternative polyA NM_001108907.1 0.04 0.03 4.0e-04 0.03 0.02 0.02 0.02 5.8e-04 4.5e-03 6.4e-03 6.4e-03
3 Liver alternative polyA XM_063269032.1 0.04 0.03 4.6e-04 0.02 0.02 0.01 0.01 9.2e-04 5.0e-03 7.6e-03 8.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.10.30.1-0.1
Area under the delay curve0.20.30.30.40.5-0.5
BMI with tail1.44.85.5-1.9-2.32.3
BMI without tail1.57.88.0-2.7-2.82.8
Body weight3.113.715.4-3.9-3.63.6
Weight adjusted by age0.20.71.0-1.0-0.70.7
Bone surface0.40.81.4-1.2-0.70.7
Bone volume0.10.30.5-0.7-0.40.4
Breakpoint value in progressive ratio session0.91.62.11.51.2-1.2
Number of licking bursts0.72.12.3-1.5-1.41.4
Context. condit. distance diff. score0.10.10.2-0.4-0.30.3
Locomotion velocity, session 10.80.91.10.71.0-1.0
Locomotion distance, session 10.20.20.3-0.20.5-0.5
Locomotion velocity, session 20.60.71.4-1.2-0.60.6
Locomotion distance, session 20.71.02.5-1.6-0.50.5
Locomotion velocity, session 30.10.20.2-0.4-0.40.4
Locomotion distance, session 30.10.10.2-0.00.4-0.4
Stereotopy head waving bouts, day 30.10.20.2-0.2-0.50.5
Stereotopy head waving duration, day 30.00.00.00.1-0.10.1
Locomotion velocity, session 71.82.02.21.21.5-1.5
Locomotion distance, session 70.10.20.20.20.5-0.5
Stereotopy head waving bouts, day 70.40.40.7-0.8-0.50.5
Stereotopy head waving duration, day 70.30.40.6-0.8-0.50.5
Locomotion velocity, session 80.00.10.10.20.2-0.2
Locomotion distance, session 80.20.30.7-0.8-0.20.2
Degree of sensitization distance0.00.00.00.1-0.10.1
Degree of sensitization stereotypy0.91.01.8-1.3-0.80.8
Conditioned locomotion0.10.10.2-0.4-0.10.1
Cocaine response after cond. corrected0.10.10.10.2-0.30.3
Cocaine response after cond. not corrected0.40.60.7-0.8-0.80.8
Cocaine response before conditioning2.93.55.8-2.4-1.61.6
Saline control response1.31.72.3-1.5-1.21.2
Bone: connectivity density0.00.00.00.0-0.20.2
Bone: cortical apparent density0.20.40.40.50.7-0.7
Bone: cortical area0.71.12.3-1.5-0.70.7
Bone: cortical porosity0.30.30.5-0.0-0.70.7
Bone: cortical porosity0.70.81.1-0.4-1.01.0
Bone: cortical thickness0.00.00.0-0.1-0.10.1
Bone: cortical thickness0.30.40.5-0.6-0.70.7
Bone: cortical tissue density0.30.50.50.60.7-0.7
Condit. Reinf. active minus inactive responses0.80.91.0-0.8-1.01.0
Condit. Reinf. active-inactive response ratio0.91.01.1-0.8-1.01.0
Condit. Reinf. active responses0.40.50.5-0.7-0.70.7
Condit. Reinf. inactive responses0.20.30.40.30.6-0.6
Incentive salience index mean0.70.90.9-1.0-1.01.0
Condit. Reinf. lever presses0.40.60.7-0.8-0.80.8
Condit. Reinf. active minus inactive responses0.30.40.5-0.30.7-0.7
Condit. Reinf. active-inactive response ratio0.20.30.4-0.30.7-0.7
Condit. Reinf. active responses0.20.30.4-0.30.7-0.7
Condit. Reinf. inactive responses0.00.00.00.2-0.00.0
Condit. Reinf. lever presses0.30.40.8-0.9-0.50.5
Condit. Reinf. lever reinforcers received0.20.30.3-0.50.5-0.5
Conditioned reinforcement - actives0.72.72.7-1.6-1.71.7
Conditioned reinforcement - inactives0.10.40.7-0.9-0.40.4
Conditioned locomotion0.40.60.7-0.8-0.70.7
Patch foraging indifference point 0 sec0.00.10.10.1-0.30.3
Patch foraging indifference point AUC2.25.35.6-2.2-2.42.4
Delay disc. indifference point, 0s delay0.30.30.40.30.6-0.6
Delay disc. indifference point, 16s delay0.30.40.70.90.5-0.5
Delay disc. indifference point, 2s delay0.40.40.40.60.7-0.7
Delay disc. indifference point, 24s delay0.20.20.4-0.0-0.60.6
Delay disc. indifference point, 4s delay0.20.20.5-0.7-0.20.2
Delay disc. indifference point, 8s delay0.40.70.80.70.9-0.9
Indifference point function ln k1.54.65.51.72.3-2.3
Indifference point function log k1.54.65.51.72.3-2.3
Patch foraging total patch changes 0 sec0.00.10.2-0.0-0.50.5
Patch foraging total patch changes 12 sec1.72.22.5-1.3-1.61.6
Patch foraging total patch changes 18 sec1.22.83.1-1.5-1.81.8
Patch foraging total patch changes 24 sec0.82.92.9-1.7-1.71.7
Patch foraging total patch changes 6 sec1.11.92.4-1.0-1.61.6
Patch foraging time to switch 0 sec0.62.54.82.21.2-1.2
Patch foraging water rate 0 sec0.72.63.6-1.9-1.41.4
Patch foraging water rate 12 sec0.00.10.2-0.20.4-0.4
Patch foraging water rate 18 sec0.10.20.20.30.4-0.4
Patch foraging water rate 24 sec0.10.20.30.20.5-0.5
Patch foraging water rate 6 sec2.63.86.7-2.6-1.51.5
Seeking ratio, delayed vs. immediate footshock1.42.02.11.41.4-1.4
Distance traveled before self-admin0.10.10.1-0.40.4-0.4
Distance traveled after self-admin0.61.11.21.01.1-1.1
Extensor digitorum longus weight2.07.98.4-2.9-2.82.8
Bone: elastic displacement2.32.94.02.01.5-1.5
Bone: elastic work0.20.30.30.50.6-0.6
Bone: endosteal estimation0.10.30.8-0.9-0.10.1
Bone: endosteal perimeter0.10.20.5-0.70.1-0.1
Epididymis fat weight0.10.81.31.10.7-0.7
Delta time in closed arm before/after self-admin0.00.00.00.20.2-0.2
Delta time in open arm before/after self-admin0.20.30.5-0.7-0.40.4
Diff in mean of infusions in LGA sessions0.40.70.90.51.0-1.0
Delay discount exponential model param0.10.10.1-0.3-0.40.4
Extinction: sum of active levers before priming0.00.00.1-0.3-0.00.0
Active lever presses in extinction session 62.52.52.6-1.5-1.61.6
Bone: final force1.11.73.2-1.8-1.01.0
Bone: final moment1.11.83.7-1.9-1.01.0
Food consumed during 24 hour testing period2.14.14.61.82.1-2.1
Glucose1.82.94.42.11.5-1.5
Heart weight0.81.31.7-0.7-1.31.3
Delay discount hyperbolic model param0.00.10.1-0.1-0.30.3
Intermittent access intake day 1-15 change0.10.70.7-0.9-0.90.9
Intermittent access intake escalation0.21.21.3-1.1-1.11.1
Intermittent access intake escalation 20.00.10.1-0.3-0.20.2
Intermitt. access day 1 inactive lever presses0.00.30.4-0.2-0.70.7
Intermitt. access day 15 inactive lever presses0.21.11.6-1.3-0.90.9
Intermitt. access escalation Index0.00.10.10.0-0.30.3
Intermittent access day 1 total infusions0.30.80.9-0.9-0.90.9
Intermittent access day 15 total infusions0.40.91.0-0.9-1.01.0
Intermittent access terminal intake (last 3 days)0.30.50.5-0.7-0.70.7
Intermittent access total infusions0.91.11.2-1.1-1.01.0
Intermittent access day 1 locomotion0.10.10.20.10.4-0.4
Intermittent access day 15 total locomotion0.00.10.10.10.3-0.3
Intermittent access total locomotion0.00.00.1-0.30.0-0.0
Intermittent access standard deviation0.00.10.20.4-0.20.2
Left kidney weight3.225.734.2-5.8-4.64.6
Right kidney weight2.819.727.1-5.2-4.04.0
Cocaine induced anxiety0.20.50.60.40.8-0.8
Post-drug Anxiety0.30.40.40.50.7-0.7
Baseline Anxiety0.61.01.41.20.9-0.9
Tail length1.26.69.6-3.1-2.32.3
Length with tail1.15.07.4-2.7-2.02.0
Length without tail0.31.82.5-1.6-1.21.2
Times rat made contact with spout0.60.70.90.70.9-0.9
Lifetime Intake1.41.71.7-1.3-1.31.3
Liver weight, left6.411.113.6-3.7-3.13.1
Liver weight, right2.13.73.9-2.0-1.91.9
Locomotor activity2.23.43.6-1.7-1.91.9
Locomotor testing distance1.23.03.2-1.6-1.81.8
Locomotor testing rearing3.010.912.0-3.5-3.23.2
Locomotion in novel chamber3.04.14.42.12.0-2.0
Locomotion in novel chamber post-restriction0.41.11.21.11.0-1.0
Fecal boli incidents, locomotor time 10.00.00.0-0.00.1-0.1
Change in fecal boli incidents, locomotor task0.60.70.91.00.7-0.7
Time >=10cm from walls, locomotor time 10.00.00.10.00.2-0.2
Bouts of movement, locomotor time 11.01.31.51.01.2-1.2
Total resting periods, locomotor time 12.52.92.91.71.7-1.7
Rest time, locomotor task time 10.30.50.50.60.7-0.7
Distance moved, locomotor task time 10.30.90.9-1.0-0.90.9
Vertical activity count, locomotor time 10.00.30.3-0.6-0.50.5
Time >=10cm from walls, locomotor time 20.00.00.0-0.00.0-0.0
Bouts of movement, locomotor time 20.92.92.91.71.7-1.7
Total resting periods, locomotor time 20.93.53.61.91.9-1.9
Rest time, locomotor task time 21.32.12.61.61.4-1.4
Distance moved, locomotor task time 21.82.42.7-1.6-1.51.5
Vertical activity count, locomotor time 20.61.51.8-1.3-1.11.1
Light reinforcement 10.20.91.4-1.2-0.80.8
Light reinforcement 20.61.31.4-1.0-1.21.2
Bone: marrow area0.10.41.0-1.0-0.20.2
Bone: maximum diameter2.54.97.3-2.7-1.91.9
Bone: maximum force0.40.81.6-1.3-0.60.6
Bone: maximum moment0.40.81.9-1.4-0.50.5
Mean time between licks in bursts0.00.20.3-0.5-0.40.4
Mean num. licks in bursts1.54.04.11.92.0-2.0
Cd content in liver0.50.50.70.40.9-0.9
Co content in liver0.40.40.40.60.7-0.7
Cu content in liver1.41.71.8-1.3-1.31.3
Fe content in liver3.74.54.9-2.2-2.12.1
K content in liver2.02.02.2-1.2-1.51.5
Mg content in liver2.22.52.6-1.5-1.61.6
Mn content in liver0.70.70.9-0.6-0.90.9
Na content in liver0.60.60.9-0.3-0.90.9
Rb content in liver0.30.40.8-0.9-0.40.4
Se content in liver8.610.110.8-3.0-3.33.3
Sr content in liver0.40.30.70.80.4-0.4
Zn content in liver2.42.83.2-1.8-1.61.6
Bone: minimum diameter0.40.82.2-1.5-0.30.3
Time in familiar zone, hab. session 10.10.10.2-0.40.2-0.2
Time in novel zone, hab. session 10.91.01.2-0.8-1.11.1
Total zone transitions, hab. session 10.10.10.3-0.50.2-0.2
Total locomotion distance, hab. session 10.50.71.00.41.0-1.0
Locomotion velocity, hab. session 11.31.82.21.01.5-1.5
Time in familiar zone, hab. session 20.10.10.10.10.4-0.4
Time in novel zone, hab. session 20.10.20.2-0.4-0.40.4
Total zone transitions, hab. session 20.40.51.2-1.1-0.40.4
Total locomotion distance, hab. session 20.60.70.90.60.9-0.9
Locomotion velocity, hab. session 20.30.40.50.40.7-0.7
Novel to familiar place preference ratio0.50.71.1-1.1-0.70.7
Novelty place preference0.40.51.0-1.0-0.50.5
Time in novel zone, NPP test0.50.61.1-1.0-0.60.6
Total zone transitions, NPP test0.10.20.4-0.7-0.30.3
Total locomotion distance, NPP test0.00.10.1-0.4-0.10.1
Locomotion velocity, NPP test0.10.10.2-0.4-0.10.1
Intraocular pressure0.20.30.40.30.6-0.6
Delta distance traveled before/after self-admin0.30.40.91.00.3-0.3
Delta ambulatory time before/after self-admin0.20.41.01.00.3-0.3
Parametrial fat weight0.30.82.01.40.4-0.4
Pavlov. Cond. lever latency1.21.51.61.21.3-1.3
Pavlov. Cond. magazine entry latency1.31.72.0-1.1-1.41.4
Pavlov. Cond. change in total contacts0.00.00.00.1-0.10.1
Pavlov. Cond. index score1.82.22.4-1.4-1.61.6
Pavlov. Cond. latency score0.91.21.4-0.9-1.21.2
Pavlov. Cond. lever contacts0.91.11.1-1.0-1.11.1
Pavlov. Cond. magazine entry number1.21.51.71.11.3-1.3
Pavlov. Cond. intertrial magazine entries0.40.50.60.60.8-0.8
Pavlov. Cond. lever-magazine prob. diff.1.82.32.4-1.4-1.61.6
Pavlov. Cond. response bias3.03.73.8-1.9-1.91.9
Pavlov. Cond. lever latency0.10.10.10.30.3-0.3
Pavlov. Cond. magazine entry latency0.00.00.1-0.0-0.20.2
Pavlov. Cond. change in total contacts0.20.50.60.60.8-0.8
Pavlov. Cond. index score0.00.00.0-0.1-0.10.1
Pavlov. Cond. latency score0.00.00.10.20.0-0.0
Pavlov. Cond. lever contacts0.20.30.3-0.6-0.50.5
Pavlov. Cond. magazine entry number0.20.20.3-0.5-0.40.4
Pavlov. Cond. intertrial magazine entries0.10.20.5-0.7-0.10.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.1-0.3-0.30.3
Pavlov. Cond. response bias0.10.10.2-0.5-0.20.2
Time in closed arm before self-admin0.00.10.1-0.3-0.30.3
Time in closed arm after self-admin0.30.40.50.70.6-0.6
Time in open arm before self-admin0.10.10.20.40.3-0.3
Time in open arm after self-admin0.00.00.00.0-0.00.0
Bone: periosteal estimation0.41.02.4-1.6-0.60.6
Bone: periosteal perimeter0.40.71.8-1.4-0.40.4
Bone: post-yield work0.10.20.3-0.10.5-0.5
Progressive ratio test 1 active lever presses0.50.81.2-1.1-0.80.8
Progressive ratio test 1 breakpoint0.40.71.0-1.0-0.70.7
Progressive ratio test 1 inactive lever presses0.82.13.2-1.8-1.21.2
Progressive ratio test 2 active lever presses1.62.32.5-1.4-1.61.6
Progressive ratio test 2 breakpoint2.02.52.7-1.5-1.71.7
Progressive ratio test 2 inactive lever presses0.61.83.0-1.7-1.11.1
Incentive Sensitization - Responses0.51.51.6-1.1-1.31.3
Incentive Sensitization - Breakpoint0.71.61.7-1.1-1.31.3
Sum of active levers in priming session hrs 5-60.40.40.40.50.6-0.6
Progressive ratio0.10.20.20.50.4-0.4
Food seeking constrained by brief footshock2.22.73.51.11.9-1.9
Seeking ratio, punishment vs. effort0.20.40.60.20.8-0.8
Retroperitoneal fat weight0.21.13.11.80.2-0.2
Reaction time number correct0.72.72.8-1.7-1.61.6
Reaction time mean minus median0.10.80.90.80.9-0.9
Reaction time mean minus median AUC0.00.00.10.10.2-0.2
Reaction time num false alarms4.98.48.5-2.9-2.92.9
Reaction time num false alarms AUC2.96.66.6-2.6-2.62.6
Reaction time trials correct on left0.72.72.8-1.7-1.61.6
Reaction time trials on left0.82.72.8-1.7-1.61.6
Reaction time mean1.02.32.31.51.5-1.5
Reaction time mean AUC0.81.92.01.41.4-1.4
Median of all reaction times1.21.81.91.31.4-1.4
Reaction time omissions0.10.10.1-0.10.4-0.4
Reaction time false alarm rate0.91.21.3-1.1-1.11.1
Reaction time premature initiation rate2.23.54.02.01.8-1.8
Reaction time premature initiations0.31.01.31.10.9-0.9
Std. dev. reaction times0.41.31.41.01.2-1.2
Reaction time trials completed0.82.72.8-1.7-1.61.6
Reaction time trials AUC0.93.33.4-1.8-1.81.8
Run reversals in cocaine runway, females2.12.42.51.61.5-1.5
Run reversals in cocaine runway, males0.91.01.5-1.2-0.80.8
Latency to leave start box in cocaine runway0.50.71.31.20.6-0.6
Latency to leave start box in cocaine runway, F0.30.30.80.90.3-0.3
Latency to leave start box in cocaine runway, M0.00.00.00.0-0.10.1
Std. dev. time between licks in bursts0.71.41.6-1.3-1.11.1
Total sessions with >9 infusions1.72.23.0-1.7-1.31.3
Short access day 1 total inactive lever presses1.12.32.8-1.7-1.41.4
Short access day 10 total inactive lever presses0.21.11.11.01.0-1.0
Short access day 1 total infusions0.71.41.4-1.2-1.21.2
Short access day 10 total infusions2.43.94.1-1.9-2.02.0
Short access total infusions1.72.42.5-1.5-1.61.6
Short access day 1 locomotion1.83.04.2-2.0-1.61.6
Short access day 10 total locomotion0.31.11.40.81.2-1.2
Short access total locomotion0.00.10.2-0.4-0.00.0
One hour access (0.3 mA shock)0.00.00.0-0.1-0.00.0
Compulsive drug intake0.00.00.0-0.1-0.20.2
One hour access (shock baseline)0.30.80.9-0.8-0.90.9
Social response proportion0.60.71.2-1.1-0.70.7
Social responses1.62.14.3-2.1-1.01.0
Social time0.10.20.3-0.30.6-0.6
Soleus weight0.51.61.7-1.1-1.31.3
Bone: stiffness1.83.44.6-2.2-1.61.6
Tibialis anterior weight3.411.612.6-3.1-3.53.5
Time to tail flick, vehicle, before self-admin0.00.00.00.1-0.10.1
Time to tail flick, vehicle, after self-admin0.20.30.40.40.6-0.6
Time to tail flick, test, before self-admin1.41.61.91.01.4-1.4
Time to tail flick, test, after self-admin0.20.20.50.70.2-0.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.10.3-0.3
Delta time to tail flick, test, before/after SA0.30.40.6-0.4-0.80.8
Tibia length1.95.37.7-2.8-2.02.0
Ambulatory time before self-admin0.10.20.2-0.50.4-0.4
Ambulatory time after self-admin0.71.01.11.01.1-1.1
Bone: tissue strength0.20.20.30.40.5-0.5
Total heroin consumption0.20.30.7-0.9-0.20.2
Bone: trabecular number0.00.00.10.40.0-0.0
Bone: trabecular spacing0.00.00.0-0.1-0.00.0
Bone: trabecular thickness0.50.70.8-0.7-0.90.9
Bone: trabecular tissue density0.10.20.20.2-0.50.5
Water consumed over 24 hours0.40.81.00.71.0-1.0
Number of responses in last shaping day2.22.83.1-1.5-1.81.8