Cabp5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Cabp5 0.94 0.04 0.0e+00 0.31 0.36 0.36 0.36 1.7e-35 6.2e-41 8.0e-42 1.2e-41
2 Liver alternative polyA NM_001108907.1 0.04 0.03 4.0e-04 0.03 0.02 0.02 0.02 5.8e-04 4.5e-03 6.4e-03 6.4e-03
3 Liver alternative polyA XM_063269032.1 0.04 0.03 4.6e-04 0.02 0.02 0.01 0.01 9.2e-04 5.0e-03 7.6e-03 9.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.1-0.3-0.10.1
Area under the delay curve0.20.30.3-0.4-0.50.5
BMI with tail1.44.85.51.92.3-2.3
BMI without tail2.67.88.02.72.8-2.8
Body weight3.113.715.43.93.6-3.6
Weight adjusted by age0.40.71.01.00.7-0.7
Bone surface0.40.81.41.20.7-0.7
Bone volume0.20.30.50.70.4-0.4
Breakpoint value in progressive ratio session1.31.62.1-1.5-1.21.2
Number of licking bursts1.32.12.31.51.4-1.4
Context. condit. distance diff. score0.10.10.20.40.3-0.3
Locomotion velocity, session 10.80.91.1-0.7-1.01.0
Locomotion distance, session 10.20.20.30.2-0.50.5
Locomotion velocity, session 20.60.71.41.20.6-0.6
Locomotion distance, session 20.71.02.51.60.5-0.5
Locomotion velocity, session 30.10.20.20.40.4-0.4
Locomotion distance, session 30.10.10.20.0-0.40.4
Stereotopy head waving bouts, day 30.10.20.20.20.5-0.5
Stereotopy head waving duration, day 30.00.00.0-0.10.1-0.1
Locomotion velocity, session 71.82.02.2-1.2-1.51.5
Locomotion distance, session 70.10.20.2-0.2-0.50.5
Stereotopy head waving bouts, day 70.40.40.70.80.5-0.5
Stereotopy head waving duration, day 70.30.40.60.80.5-0.5
Locomotion velocity, session 80.00.10.1-0.2-0.20.2
Locomotion distance, session 80.20.30.70.80.2-0.2
Degree of sensitization distance0.00.00.0-0.10.1-0.1
Degree of sensitization stereotypy0.91.01.81.30.8-0.8
Conditioned locomotion0.10.10.20.40.1-0.1
Cocaine response after cond. corrected0.10.10.1-0.20.3-0.3
Cocaine response after cond. not corrected0.50.60.70.80.8-0.8
Cocaine response before conditioning3.03.55.82.41.6-1.6
Saline control response1.31.72.31.51.2-1.2
Bone: connectivity density0.00.00.0-0.00.2-0.2
Bone: cortical apparent density0.30.40.4-0.5-0.70.7
Bone: cortical area0.71.12.31.50.7-0.7
Bone: cortical porosity0.30.30.50.00.7-0.7
Bone: cortical porosity0.70.81.10.41.0-1.0
Bone: cortical thickness0.00.00.00.10.1-0.1
Bone: cortical thickness0.40.40.50.60.7-0.7
Bone: cortical tissue density0.30.50.5-0.6-0.70.7
Condit. Reinf. active minus inactive responses0.80.91.00.81.0-1.0
Condit. Reinf. active-inactive response ratio0.91.01.10.81.0-1.0
Condit. Reinf. active responses0.40.50.50.70.7-0.7
Condit. Reinf. inactive responses0.20.30.4-0.3-0.60.6
Incentive salience index mean0.80.90.91.01.0-1.0
Condit. Reinf. lever presses0.40.60.70.80.8-0.8
Condit. Reinf. active minus inactive responses0.30.40.50.3-0.70.7
Condit. Reinf. active-inactive response ratio0.30.30.40.3-0.70.7
Condit. Reinf. active responses0.20.30.40.3-0.70.7
Condit. Reinf. inactive responses0.00.00.0-0.20.0-0.0
Condit. Reinf. lever presses0.30.40.80.90.5-0.5
Condit. Reinf. lever reinforcers received0.20.30.30.5-0.50.5
Conditioned reinforcement - actives1.62.72.71.61.7-1.7
Conditioned reinforcement - inactives0.20.40.70.90.4-0.4
Conditioned locomotion0.40.60.70.80.7-0.7
Patch foraging indifference point 0 sec0.00.10.1-0.10.3-0.3
Patch foraging indifference point AUC3.75.35.62.22.4-2.4
Delay disc. indifference point, 0s delay0.30.30.4-0.3-0.60.6
Delay disc. indifference point, 16s delay0.40.40.7-0.9-0.50.5
Delay disc. indifference point, 2s delay0.40.40.4-0.6-0.70.7
Delay disc. indifference point, 24s delay0.20.20.40.00.6-0.6
Delay disc. indifference point, 4s delay0.20.20.50.70.2-0.2
Delay disc. indifference point, 8s delay0.60.70.8-0.7-0.90.9
Indifference point function ln k2.64.65.5-1.7-2.32.3
Indifference point function log k2.64.65.5-1.7-2.32.3
Patch foraging total patch changes 0 sec0.10.10.20.00.5-0.5
Patch foraging total patch changes 12 sec1.72.22.51.31.6-1.6
Patch foraging total patch changes 18 sec1.82.83.11.51.8-1.8
Patch foraging total patch changes 24 sec1.72.92.91.71.7-1.7
Patch foraging total patch changes 6 sec1.31.92.41.01.6-1.6
Patch foraging time to switch 0 sec1.22.54.8-2.2-1.21.2
Patch foraging water rate 0 sec1.22.63.61.91.4-1.4
Patch foraging water rate 12 sec0.10.10.20.2-0.40.4
Patch foraging water rate 18 sec0.10.20.2-0.3-0.40.4
Patch foraging water rate 24 sec0.10.20.3-0.2-0.50.5
Patch foraging water rate 6 sec2.63.86.72.61.5-1.5
Seeking ratio, delayed vs. immediate footshock1.62.02.1-1.4-1.41.4
Distance traveled before self-admin0.10.10.10.4-0.40.4
Distance traveled after self-admin0.91.11.2-1.0-1.11.1
Extensor digitorum longus weight2.07.98.42.92.8-2.8
Bone: elastic displacement2.52.94.0-2.0-1.51.5
Bone: elastic work0.20.30.3-0.5-0.60.6
Bone: endosteal estimation0.10.30.80.90.1-0.1
Bone: endosteal perimeter0.10.20.50.7-0.10.1
Epididymis fat weight0.20.81.3-1.1-0.70.7
Delta time in closed arm before/after self-admin0.00.00.0-0.2-0.20.2
Delta time in open arm before/after self-admin0.30.30.50.70.4-0.4
Diff in mean of infusions in LGA sessions0.60.70.9-0.5-1.01.0
Delay discount exponential model param0.10.10.10.30.4-0.4
Extinction: sum of active levers before priming0.00.00.10.30.0-0.0
Active lever presses in extinction session 62.52.52.61.51.6-1.6
Bone: final force1.11.73.21.81.0-1.0
Bone: final moment1.11.83.71.91.0-1.0
Food consumed during 24 hour testing period3.04.14.6-1.8-2.12.1
Glucose1.82.94.4-2.1-1.51.5
Heart weight0.81.31.70.71.3-1.3
Delay discount hyperbolic model param0.10.10.10.10.3-0.3
Intermittent access intake day 1-15 change0.40.70.70.90.9-0.9
Intermittent access intake escalation0.61.21.31.11.1-1.1
Intermittent access intake escalation 20.10.10.10.30.2-0.2
Intermitt. access day 1 inactive lever presses0.10.30.40.20.7-0.7
Intermitt. access day 15 inactive lever presses0.51.11.61.30.9-0.9
Intermitt. access escalation Index0.00.10.1-0.00.3-0.3
Intermittent access day 1 total infusions0.50.80.90.90.9-0.9
Intermittent access day 15 total infusions0.60.91.00.91.0-1.0
Intermittent access terminal intake (last 3 days)0.40.50.50.70.7-0.7
Intermittent access total infusions0.91.11.21.11.0-1.0
Intermittent access day 1 locomotion0.10.10.2-0.1-0.40.4
Intermittent access day 15 total locomotion0.00.10.1-0.1-0.30.3
Intermittent access total locomotion0.00.00.10.3-0.00.0
Intermittent access standard deviation0.00.10.2-0.40.2-0.2
Left kidney weight5.525.734.25.84.6-4.6
Right kidney weight4.319.727.15.24.0-4.0
Cocaine induced anxiety0.30.50.6-0.4-0.80.8
Post-drug Anxiety0.40.40.4-0.5-0.70.7
Baseline Anxiety0.91.01.4-1.2-0.90.9
Tail length1.76.69.63.12.3-2.3
Length with tail1.25.07.42.72.0-2.0
Length without tail0.61.82.51.61.2-1.2
Times rat made contact with spout0.60.70.9-0.7-0.90.9
Lifetime Intake1.41.71.71.31.3-1.3
Liver weight, left6.711.113.63.73.1-3.1
Liver weight, right2.13.73.92.01.9-1.9
Locomotor activity2.23.43.61.71.9-1.9
Locomotor testing distance1.73.03.21.61.8-1.8
Locomotor testing rearing5.410.912.03.53.2-3.2
Locomotion in novel chamber3.24.14.4-2.1-2.02.0
Locomotion in novel chamber post-restriction0.71.11.2-1.1-1.01.0
Fecal boli incidents, locomotor time 10.00.00.00.0-0.10.1
Change in fecal boli incidents, locomotor task0.70.70.9-1.0-0.70.7
Time >=10cm from walls, locomotor time 10.00.00.1-0.0-0.20.2
Bouts of movement, locomotor time 11.21.31.5-1.0-1.21.2
Total resting periods, locomotor time 12.62.92.9-1.7-1.71.7
Rest time, locomotor task time 10.40.50.5-0.6-0.70.7
Distance moved, locomotor task time 10.60.90.91.00.9-0.9
Vertical activity count, locomotor time 10.10.30.30.60.5-0.5
Time >=10cm from walls, locomotor time 20.00.00.00.0-0.00.0
Bouts of movement, locomotor time 21.82.92.9-1.7-1.71.7
Total resting periods, locomotor time 22.03.53.6-1.9-1.91.9
Rest time, locomotor task time 21.72.12.6-1.6-1.41.4
Distance moved, locomotor task time 22.02.42.71.61.5-1.5
Vertical activity count, locomotor time 21.11.51.81.31.1-1.1
Light reinforcement 10.40.91.41.20.8-0.8
Light reinforcement 20.81.31.41.01.2-1.2
Bone: marrow area0.20.41.01.00.2-0.2
Bone: maximum diameter2.64.97.32.71.9-1.9
Bone: maximum force0.40.81.61.30.6-0.6
Bone: maximum moment0.50.81.91.40.5-0.5
Mean time between licks in bursts0.10.20.30.50.4-0.4
Mean num. licks in bursts2.54.04.1-1.9-2.02.0
Cd content in liver0.50.50.7-0.4-0.90.9
Co content in liver0.40.40.4-0.6-0.70.7
Cu content in liver1.41.71.81.31.3-1.3
Fe content in liver3.74.54.92.22.1-2.1
K content in liver2.02.02.21.21.5-1.5
Mg content in liver2.42.52.61.51.6-1.6
Mn content in liver0.70.70.90.60.9-0.9
Na content in liver0.60.60.90.30.9-0.9
Rb content in liver0.30.40.80.90.4-0.4
Se content in liver8.610.110.83.03.3-3.3
Sr content in liver0.40.30.7-0.8-0.40.4
Zn content in liver2.52.83.21.81.6-1.6
Bone: minimum diameter0.40.82.21.50.3-0.3
Time in familiar zone, hab. session 10.10.10.20.4-0.20.2
Time in novel zone, hab. session 11.01.01.20.81.1-1.1
Total zone transitions, hab. session 10.10.10.30.5-0.20.2
Total locomotion distance, hab. session 10.50.71.0-0.4-1.01.0
Locomotion velocity, hab. session 11.31.82.2-1.0-1.51.5
Time in familiar zone, hab. session 20.10.10.1-0.1-0.40.4
Time in novel zone, hab. session 20.20.20.20.40.4-0.4
Total zone transitions, hab. session 20.40.51.21.10.4-0.4
Total locomotion distance, hab. session 20.60.70.9-0.6-0.90.9
Locomotion velocity, hab. session 20.30.40.5-0.4-0.70.7
Novel to familiar place preference ratio0.60.71.11.10.7-0.7
Novelty place preference0.50.51.01.00.5-0.5
Time in novel zone, NPP test0.50.61.11.00.6-0.6
Total zone transitions, NPP test0.10.20.40.70.3-0.3
Total locomotion distance, NPP test0.00.10.10.40.1-0.1
Locomotion velocity, NPP test0.10.10.20.40.1-0.1
Intraocular pressure0.20.30.4-0.3-0.60.6
Delta distance traveled before/after self-admin0.30.40.9-1.0-0.30.3
Delta ambulatory time before/after self-admin0.30.41.0-1.0-0.30.3
Parametrial fat weight0.30.82.0-1.4-0.40.4
Pavlov. Cond. lever latency1.21.51.6-1.2-1.31.3
Pavlov. Cond. magazine entry latency1.31.72.01.11.4-1.4
Pavlov. Cond. change in total contacts0.00.00.0-0.10.1-0.1
Pavlov. Cond. index score1.82.22.41.41.6-1.6
Pavlov. Cond. latency score0.91.21.40.91.2-1.2
Pavlov. Cond. lever contacts0.91.11.11.01.1-1.1
Pavlov. Cond. magazine entry number1.21.51.7-1.1-1.31.3
Pavlov. Cond. intertrial magazine entries0.40.50.6-0.6-0.80.8
Pavlov. Cond. lever-magazine prob. diff.1.82.32.41.41.6-1.6
Pavlov. Cond. response bias3.03.73.81.91.9-1.9
Pavlov. Cond. lever latency0.10.10.1-0.3-0.30.3
Pavlov. Cond. magazine entry latency0.00.00.10.00.2-0.2
Pavlov. Cond. change in total contacts0.30.50.6-0.6-0.80.8
Pavlov. Cond. index score0.00.00.00.10.1-0.1
Pavlov. Cond. latency score0.00.00.1-0.2-0.00.0
Pavlov. Cond. lever contacts0.20.30.30.60.5-0.5
Pavlov. Cond. magazine entry number0.20.20.30.50.4-0.4
Pavlov. Cond. intertrial magazine entries0.10.20.50.70.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.30.3-0.3
Pavlov. Cond. response bias0.10.10.20.50.2-0.2
Time in closed arm before self-admin0.10.10.10.30.3-0.3
Time in closed arm after self-admin0.30.40.5-0.7-0.60.6
Time in open arm before self-admin0.10.10.2-0.4-0.30.3
Time in open arm after self-admin0.00.00.0-0.00.0-0.0
Bone: periosteal estimation0.51.02.41.60.6-0.6
Bone: periosteal perimeter0.40.71.81.40.4-0.4
Bone: post-yield work0.10.20.30.1-0.50.5
Progressive ratio test 1 active lever presses0.70.81.21.10.8-0.8
Progressive ratio test 1 breakpoint0.50.71.01.00.7-0.7
Progressive ratio test 1 inactive lever presses1.52.13.31.81.2-1.2
Progressive ratio test 2 active lever presses2.02.32.51.41.6-1.6
Progressive ratio test 2 breakpoint2.22.52.71.51.7-1.7
Progressive ratio test 2 inactive lever presses1.11.83.01.71.1-1.1
Incentive Sensitization - Responses1.11.51.61.11.3-1.3
Incentive Sensitization - Breakpoint1.21.61.71.11.3-1.3
Sum of active levers in priming session hrs 5-60.40.40.4-0.5-0.60.6
Progressive ratio0.10.20.2-0.5-0.40.4
Food seeking constrained by brief footshock2.22.73.5-1.1-1.91.9
Seeking ratio, punishment vs. effort0.30.40.6-0.2-0.80.8
Retroperitoneal fat weight0.21.13.1-1.8-0.20.2
Reaction time number correct1.42.72.81.71.6-1.6
Reaction time mean minus median0.30.80.9-0.8-0.90.9
Reaction time mean minus median AUC0.00.00.1-0.1-0.20.2
Reaction time num false alarms5.98.48.52.92.9-2.9
Reaction time num false alarms AUC4.26.66.62.62.6-2.6
Reaction time trials correct on left1.42.72.81.71.6-1.6
Reaction time trials on left1.42.72.81.71.6-1.6
Reaction time mean1.42.32.3-1.5-1.51.5
Reaction time mean AUC1.21.92.0-1.4-1.41.4
Median of all reaction times1.31.81.9-1.3-1.41.4
Reaction time omissions0.10.10.10.1-0.40.4
Reaction time false alarm rate0.91.21.31.11.1-1.1
Reaction time premature initiation rate2.53.54.0-2.0-1.81.8
Reaction time premature initiations0.61.01.3-1.1-0.90.9
Std. dev. reaction times0.71.31.4-1.0-1.21.2
Reaction time trials completed1.42.72.81.71.6-1.6
Reaction time trials AUC1.73.33.41.81.8-1.8
Run reversals in cocaine runway, females2.42.42.5-1.6-1.51.5
Run reversals in cocaine runway, males1.01.01.51.20.8-0.8
Latency to leave start box in cocaine runway0.60.71.4-1.2-0.60.6
Latency to leave start box in cocaine runway, F0.30.30.8-0.9-0.30.3
Latency to leave start box in cocaine runway, M0.00.00.0-0.00.1-0.1
Std. dev. time between licks in bursts1.01.41.61.31.1-1.1
Total sessions with >9 infusions1.82.23.01.71.3-1.3
Short access day 1 total inactive lever presses1.72.32.81.71.4-1.4
Short access day 10 total inactive lever presses0.41.11.1-1.0-1.01.0
Short access day 1 total infusions1.01.41.41.21.2-1.2
Short access day 10 total infusions3.13.94.11.92.0-2.0
Short access total infusions1.92.42.51.51.6-1.6
Short access day 1 locomotion2.43.04.22.01.6-1.6
Short access day 10 total locomotion0.61.11.4-0.8-1.21.2
Short access total locomotion0.00.10.20.40.0-0.0
One hour access (0.3 mA shock)0.00.00.00.10.0-0.0
Compulsive drug intake0.00.00.00.10.2-0.2
One hour access (shock baseline)0.50.80.90.80.9-0.9
Social response proportion0.70.71.21.10.7-0.7
Social responses1.72.14.32.11.0-1.0
Social time0.20.20.30.3-0.60.6
Soleus weight0.51.61.71.11.3-1.3
Bone: stiffness2.13.44.72.21.6-1.6
Tibialis anterior weight3.411.612.63.13.5-3.5
Time to tail flick, vehicle, before self-admin0.00.00.0-0.10.1-0.1
Time to tail flick, vehicle, after self-admin0.20.30.4-0.4-0.60.6
Time to tail flick, test, before self-admin1.61.61.9-1.0-1.41.4
Time to tail flick, test, after self-admin0.20.20.5-0.7-0.20.2
Delta time to tail flick, vehicle, before/after SA0.00.00.10.1-0.30.3
Delta time to tail flick, test, before/after SA0.40.40.60.40.8-0.8
Tibia length1.95.37.72.82.0-2.0
Ambulatory time before self-admin0.10.20.20.5-0.40.4
Ambulatory time after self-admin0.91.01.1-1.0-1.11.1
Bone: tissue strength0.20.20.3-0.4-0.50.5
Total heroin consumption0.20.30.70.90.2-0.2
Bone: trabecular number0.00.00.1-0.4-0.00.0
Bone: trabecular spacing0.00.00.00.10.0-0.0
Bone: trabecular thickness0.60.70.80.70.9-0.9
Bone: trabecular tissue density0.10.20.2-0.20.5-0.5
Water consumed over 24 hours0.60.81.0-0.7-1.01.0
Number of responses in last shaping day2.62.83.11.51.8-1.8