C5h1orf127

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr5_164374718_164375873 0.02 0.02 2.1e-03 0.01 0.01 -0 0.01 9.8e-03 1.3e-02 4.1e-01 1.6e-02
2 Liver mRNA stability C5h1orf127 0.02 0.02 2.4e-03 0.01 0.01 0.01 0.01 9.2e-03 1.9e-02 5.3e-02 1.8e-02
3 Liver gene expression C5h1orf127 0.1 0.07 6.2e-10 0.07 0.06 0.06 0.07 1.7e-08 9.6e-08 3.3e-07 2.0e-08
4 Adipose gene expression C5h1orf127 0.04 0.04 4.6e-04 0.02 0.02 0.01 0.02 1.6e-03 4.4e-03 3.9e-02 3.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.2-0.3-0.2-0.2
Area under the delay curve1.11.32.01.4-0.8-1.3-0.9
BMI with tail0.00.10.10.1-0.3-0.10.4
BMI without tail0.10.20.3-0.50.20.60.2
Body weight0.31.31.7-1.10.81.31.3
Weight adjusted by age1.52.22.8-1.71.41.61.2
Bone surface0.40.80.9-1.00.80.90.8
Bone volume0.10.20.2-0.40.40.50.3
Breakpoint value in progressive ratio session0.30.40.7-0.6-0.10.70.8
Number of licking bursts1.01.61.81.2-1.3-1.2-1.4
Context. condit. distance diff. score4.04.95.42.3-2.0-2.3-2.2
Locomotion velocity, session 10.10.10.30.2-0.5-0.2-0.3
Locomotion distance, session 10.00.00.10.0-0.3-0.1-0.1
Locomotion velocity, session 20.40.50.60.8-0.7-0.7-0.7
Locomotion distance, session 20.10.10.2-0.40.10.40.3
Locomotion velocity, session 30.81.01.01.0-1.0-0.9-1.0
Locomotion distance, session 30.50.60.70.8-0.7-0.8-0.8
Stereotopy head waving bouts, day 30.00.00.1-0.2-0.10.20.1
Stereotopy head waving duration, day 30.10.10.2-0.40.20.40.4
Locomotion velocity, session 70.00.00.00.1-0.1-0.1-0.1
Locomotion distance, session 70.10.10.2-0.40.20.40.4
Stereotopy head waving bouts, day 72.32.63.01.6-1.4-1.6-1.7
Stereotopy head waving duration, day 71.21.41.81.2-0.9-1.2-1.3
Locomotion velocity, session 82.32.83.61.6-1.9-1.6-1.6
Locomotion distance, session 82.23.23.61.8-1.9-1.7-1.8
Degree of sensitization distance0.30.30.4-0.60.40.60.6
Degree of sensitization stereotypy0.80.91.11.0-0.7-1.0-1.1
Conditioned locomotion3.54.04.32.0-1.9-2.1-2.0
Cocaine response after cond. corrected0.80.91.1-1.00.91.00.9
Cocaine response after cond. not corrected0.70.81.0-1.00.90.90.8
Cocaine response before conditioning0.00.00.0-0.0-0.00.10.1
Saline control response0.60.81.1-1.00.60.90.9
Bone: connectivity density0.00.00.0-0.1-0.1-0.1-0.1
Bone: cortical apparent density2.12.84.5-1.42.11.51.6
Bone: cortical area1.32.02.1-1.41.21.51.4
Bone: cortical porosity1.11.21.41.0-1.2-1.0-1.1
Bone: cortical porosity0.80.81.10.8-1.1-0.9-1.0
Bone: cortical thickness0.61.01.1-1.00.91.01.0
Bone: cortical thickness0.30.30.4-0.60.60.60.5
Bone: cortical tissue density2.12.84.4-1.42.11.51.6
Condit. Reinf. active minus inactive responses0.80.91.1-1.00.81.01.0
Condit. Reinf. active-inactive response ratio2.32.53.0-1.51.71.51.5
Condit. Reinf. active responses0.00.00.0-0.0-0.10.10.1
Condit. Reinf. inactive responses3.23.94.22.0-2.0-2.0-2.0
Incentive salience index mean3.34.14.4-2.01.92.12.1
Condit. Reinf. lever presses3.04.24.5-2.02.02.12.0
Condit. Reinf. active minus inactive responses0.60.81.01.0-0.8-0.8-1.0
Condit. Reinf. active-inactive response ratio0.30.40.50.7-0.4-0.5-0.7
Condit. Reinf. active responses0.81.21.41.2-1.0-1.0-1.1
Condit. Reinf. inactive responses0.00.00.1-0.20.10.30.2
Condit. Reinf. lever presses0.00.00.20.1-0.4-0.1-0.1
Condit. Reinf. lever reinforcers received0.71.01.21.1-1.0-0.9-1.1
Conditioned reinforcement - actives0.61.11.30.9-1.1-1.0-1.1
Conditioned reinforcement - inactives0.10.10.20.3-0.0-0.2-0.4
Conditioned locomotion0.81.11.30.9-1.1-1.0-1.1
Patch foraging indifference point 0 sec0.50.91.2-1.10.81.00.9
Patch foraging indifference point AUC0.30.50.8-0.60.90.60.7
Delay disc. indifference point, 0s delay1.11.21.51.2-0.7-1.2-1.1
Delay disc. indifference point, 16s delay1.21.31.61.3-1.2-1.2-0.9
Delay disc. indifference point, 2s delay0.91.01.61.1-0.4-1.0-1.3
Delay disc. indifference point, 24s delay0.50.61.3-0.60.30.61.1
Delay disc. indifference point, 4s delay0.60.61.01.0-0.3-0.9-0.8
Delay disc. indifference point, 8s delay0.30.30.50.7-0.4-0.7-0.3
Indifference point function ln k0.10.20.30.5-0.3-0.4-0.5
Indifference point function log k0.10.20.30.5-0.3-0.4-0.5
Patch foraging total patch changes 0 sec0.51.01.3-1.10.71.11.0
Patch foraging total patch changes 12 sec1.01.31.5-1.21.01.21.2
Patch foraging total patch changes 18 sec0.50.81.0-0.90.71.01.0
Patch foraging total patch changes 24 sec0.50.91.3-1.00.80.91.1
Patch foraging total patch changes 6 sec1.92.93.3-1.61.81.71.6
Patch foraging time to switch 0 sec1.02.02.7-1.50.91.71.4
Patch foraging water rate 0 sec0.81.72.21.4-0.9-1.5-1.3
Patch foraging water rate 12 sec0.00.10.10.2-0.1-0.4-0.3
Patch foraging water rate 18 sec0.00.00.0-0.20.20.10.2
Patch foraging water rate 24 sec0.30.40.5-0.60.70.50.6
Patch foraging water rate 6 sec0.50.71.00.8-0.8-1.0-0.8
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.00.30.3
Distance traveled before self-admin0.10.10.30.1-0.1-0.1-0.6
Distance traveled after self-admin0.10.10.1-0.30.30.3-0.0
Extensor digitorum longus weight0.20.60.70.8-0.8-0.8-0.7
Bone: elastic displacement6.57.59.22.6-3.0-2.7-2.7
Bone: elastic work3.64.76.02.0-2.4-2.1-2.1
Bone: endosteal estimation1.02.22.6-1.51.31.61.5
Bone: endosteal perimeter0.71.41.7-1.21.01.31.2
Epididymis fat weight1.13.85.2-2.01.52.02.3
Delta time in closed arm before/after self-admin0.00.00.1-0.00.20.2-0.3
Delta time in open arm before/after self-admin0.10.10.4-0.4-0.10.30.6
Diff in mean of infusions in LGA sessions0.20.20.30.4-0.5-0.4-0.6
Delay discount exponential model param1.01.11.6-1.30.71.20.8
Extinction: sum of active levers before priming0.00.00.10.10.2-0.1-0.3
Active lever presses in extinction session 60.10.10.2-0.40.20.40.3
Bone: final force0.91.51.7-1.11.31.21.2
Bone: final moment0.40.60.8-0.70.90.80.7
Food consumed during 24 hour testing period0.00.00.0-0.1-0.10.2-0.1
Glucose0.10.10.20.3-0.3-0.4-0.1
Heart weight14.923.028.64.8-5.3-4.5-4.4
Delay discount hyperbolic model param1.31.42.1-1.40.81.31.0
Intermittent access intake day 1-15 change0.20.50.80.8-0.5-0.6-0.9
Intermittent access intake escalation0.20.40.80.7-0.3-0.5-0.9
Intermittent access intake escalation 20.40.50.60.8-0.7-0.5-0.7
Intermitt. access day 1 inactive lever presses0.00.10.1-0.30.30.30.3
Intermitt. access day 15 inactive lever presses0.20.40.6-0.80.60.70.4
Intermitt. access escalation Index0.00.10.20.2-0.4-0.1-0.2
Intermittent access day 1 total infusions2.13.34.0-2.01.91.81.6
Intermittent access day 15 total infusions1.21.82.6-1.41.61.40.9
Intermittent access terminal intake (last 3 days)3.74.95.5-2.32.22.32.0
Intermittent access total infusions4.14.95.4-2.32.32.21.9
Intermittent access day 1 locomotion3.84.85.4-2.32.12.22.0
Intermittent access day 15 total locomotion0.51.01.4-1.21.01.00.8
Intermittent access total locomotion2.32.73.2-1.81.61.71.4
Intermittent access standard deviation0.10.20.2-0.50.40.40.4
Left kidney weight0.00.00.10.1-0.20.00.2
Right kidney weight0.00.10.1-0.1-0.40.10.2
Cocaine induced anxiety0.71.01.30.9-1.1-0.8-1.1
Post-drug Anxiety0.91.01.70.9-0.9-0.9-1.3
Baseline Anxiety0.20.20.4-0.40.60.40.3
Tail length0.41.72.6-1.51.11.60.9
Length with tail0.62.53.4-1.71.31.81.5
Length without tail0.10.30.60.6-0.8-0.5-0.2
Times rat made contact with spout0.10.10.2-0.40.20.50.3
Lifetime Intake3.94.75.3-2.32.22.21.9
Liver weight, left4.57.49.0-2.82.32.83.0
Liver weight, right2.84.95.8-2.31.92.22.4
Locomotor activity3.35.26.12.2-2.5-2.2-2.2
Locomotor testing distance1.63.03.41.7-1.8-1.7-1.7
Locomotor testing rearing0.20.40.4-0.60.50.60.6
Locomotion in novel chamber1.62.12.91.7-0.9-1.6-1.3
Locomotion in novel chamber post-restriction3.45.66.52.5-2.1-2.3-2.5
Fecal boli incidents, locomotor time 11.42.02.6-1.61.31.41.3
Change in fecal boli incidents, locomotor task2.01.92.21.5-1.3-1.3-1.5
Time >=10cm from walls, locomotor time 10.10.10.10.2-0.2-0.2-0.3
Bouts of movement, locomotor time 11.61.82.1-1.31.41.41.2
Total resting periods, locomotor time 12.62.93.0-1.71.71.71.7
Rest time, locomotor task time 10.40.50.60.7-0.7-0.8-0.6
Distance moved, locomotor task time 10.00.10.2-0.0-0.00.4-0.3
Vertical activity count, locomotor time 10.10.20.40.4-0.10.0-0.6
Time >=10cm from walls, locomotor time 20.50.81.4-0.91.20.90.4
Bouts of movement, locomotor time 20.00.10.2-0.20.2-0.10.4
Total resting periods, locomotor time 20.00.00.10.2-0.0-0.40.1
Rest time, locomotor task time 21.51.92.61.4-1.6-1.6-0.8
Distance moved, locomotor task time 20.60.71.4-0.80.81.20.3
Vertical activity count, locomotor time 20.10.10.30.10.00.2-0.5
Light reinforcement 10.20.60.90.8-0.5-0.8-1.0
Light reinforcement 20.00.00.00.00.00.0-0.2
Bone: marrow area0.81.82.1-1.41.11.51.3
Bone: maximum diameter1.12.02.3-1.41.21.51.5
Bone: maximum force1.22.12.2-1.41.41.51.4
Bone: maximum moment0.50.80.9-0.90.91.00.8
Mean time between licks in bursts0.51.21.5-1.11.01.01.2
Mean num. licks in bursts1.92.93.2-1.71.61.81.7
Cd content in liver0.20.20.30.5-0.2-0.3-0.6
Co content in liver0.80.91.01.0-1.0-1.0-0.9
Cu content in liver0.60.70.90.9-0.9-0.9-0.7
Fe content in liver0.30.40.6-0.50.60.50.7
K content in liver0.20.20.30.4-0.6-0.4-0.4
Mg content in liver0.30.30.4-0.60.30.60.6
Mn content in liver0.60.70.9-0.90.70.81.0
Na content in liver0.40.40.70.5-0.8-0.6-0.4
Rb content in liver0.20.20.4-0.50.20.60.5
Se content in liver2.32.72.8-1.61.71.61.7
Sr content in liver0.20.20.5-0.30.70.30.4
Zn content in liver0.10.10.1-0.30.20.30.3
Bone: minimum diameter2.64.75.3-2.32.02.22.2
Time in familiar zone, hab. session 10.50.50.50.7-0.7-0.7-0.7
Time in novel zone, hab. session 10.50.50.5-0.70.60.70.7
Total zone transitions, hab. session 10.10.20.3-0.6-0.00.50.3
Total locomotion distance, hab. session 10.10.10.40.1-0.6-0.1-0.3
Locomotion velocity, hab. session 10.20.30.70.3-0.9-0.3-0.5
Time in familiar zone, hab. session 20.91.01.21.1-0.7-1.0-1.1
Time in novel zone, hab. session 20.00.00.1-0.20.00.20.3
Total zone transitions, hab. session 20.70.91.20.9-1.1-0.9-1.0
Total locomotion distance, hab. session 21.62.12.21.4-1.5-1.4-1.5
Locomotion velocity, hab. session 20.81.11.40.9-1.2-1.0-1.1
Novel to familiar place preference ratio0.80.80.9-1.00.90.90.9
Novelty place preference0.60.60.7-0.80.80.80.7
Time in novel zone, NPP test0.40.40.5-0.70.70.60.6
Total zone transitions, NPP test2.33.33.51.8-1.8-1.7-1.9
Total locomotion distance, NPP test2.23.13.41.7-1.8-1.7-1.9
Locomotion velocity, NPP test2.02.93.51.6-1.9-1.6-1.7
Intraocular pressure0.40.50.8-0.70.80.90.6
Delta distance traveled before/after self-admin0.40.40.7-0.70.40.60.8
Delta ambulatory time before/after self-admin1.11.31.7-1.30.81.11.3
Parametrial fat weight1.02.42.5-1.61.61.51.6
Pavlov. Cond. lever latency0.40.60.70.7-0.6-0.8-0.8
Pavlov. Cond. magazine entry latency1.31.72.5-1.11.61.21.3
Pavlov. Cond. change in total contacts0.40.40.5-0.60.50.60.7
Pavlov. Cond. index score1.41.82.3-1.21.51.31.3
Pavlov. Cond. latency score0.81.01.2-0.91.11.01.0
Pavlov. Cond. lever contacts0.80.91.1-0.91.11.01.0
Pavlov. Cond. magazine entry number1.01.32.21.0-1.5-1.0-1.0
Pavlov. Cond. intertrial magazine entries1.21.52.01.1-1.4-1.1-1.1
Pavlov. Cond. lever-magazine prob. diff.1.82.22.8-1.31.71.51.5
Pavlov. Cond. response bias1.11.42.3-1.01.51.11.1
Pavlov. Cond. lever latency0.50.70.9-0.91.00.80.8
Pavlov. Cond. magazine entry latency0.00.00.0-0.20.20.10.2
Pavlov. Cond. change in total contacts0.00.00.10.1-0.2-0.1-0.2
Pavlov. Cond. index score0.00.00.00.1-0.2-0.1-0.0
Pavlov. Cond. latency score0.00.00.00.0-0.1-0.1-0.0
Pavlov. Cond. lever contacts0.50.70.90.8-1.0-0.8-0.8
Pavlov. Cond. magazine entry number0.10.10.1-0.30.20.40.3
Pavlov. Cond. intertrial magazine entries1.01.51.6-1.21.21.31.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.0-0.1-0.00.0
Pavlov. Cond. response bias0.50.71.00.9-1.0-0.8-0.8
Time in closed arm before self-admin0.20.30.3-0.50.60.40.5
Time in closed arm after self-admin0.10.10.5-0.20.70.3-0.1
Time in open arm before self-admin1.92.12.41.5-1.4-1.4-1.5
Time in open arm after self-admin0.91.01.80.9-1.3-0.9-0.6
Bone: periosteal estimation1.73.54.0-2.01.72.01.9
Bone: periosteal perimeter0.61.01.3-1.10.81.11.0
Bone: post-yield work0.91.21.5-1.11.21.21.0
Progressive ratio test 1 active lever presses0.30.40.8-0.60.90.40.3
Progressive ratio test 1 breakpoint0.40.41.0-0.71.00.50.4
Progressive ratio test 1 inactive lever presses0.20.30.7-0.50.90.50.2
Progressive ratio test 2 active lever presses2.93.44.2-1.92.11.91.6
Progressive ratio test 2 breakpoint3.13.54.3-1.92.11.91.6
Progressive ratio test 2 inactive lever presses0.61.01.7-1.01.31.00.5
Incentive Sensitization - Responses1.31.82.0-1.41.31.41.2
Incentive Sensitization - Breakpoint1.52.02.3-1.51.41.51.3
Sum of active levers in priming session hrs 5-60.10.10.2-0.30.10.40.1
Progressive ratio0.00.10.10.3-0.3-0.4-0.1
Food seeking constrained by brief footshock1.61.92.61.2-1.3-1.4-1.6
Seeking ratio, punishment vs. effort0.30.50.70.6-0.7-0.6-0.9
Retroperitoneal fat weight0.41.52.7-1.20.91.11.6
Reaction time number correct0.91.72.41.4-1.0-1.3-1.6
Reaction time mean minus median0.71.81.9-1.31.41.31.3
Reaction time mean minus median AUC0.10.20.3-0.60.30.60.4
Reaction time num false alarms0.10.20.6-0.10.80.20.1
Reaction time num false alarms AUC0.00.10.10.30.2-0.2-0.3
Reaction time trials correct on left0.91.72.41.4-1.0-1.3-1.6
Reaction time trials on left0.81.52.21.3-0.9-1.2-1.5
Reaction time mean0.10.10.2-0.40.40.40.3
Reaction time mean AUC0.20.30.3-0.60.50.50.5
Median of all reaction times0.00.00.0-0.10.10.1-0.1
Reaction time omissions1.11.62.0-1.41.01.21.4
Reaction time false alarm rate0.30.30.6-0.50.80.50.5
Reaction time premature initiation rate3.14.35.3-2.02.01.92.3
Reaction time premature initiations0.81.41.9-1.11.41.11.2
Std. dev. reaction times0.71.31.5-1.21.11.11.1
Reaction time trials completed0.81.52.21.3-0.9-1.2-1.5
Reaction time trials AUC0.91.62.41.4-0.9-1.2-1.5
Run reversals in cocaine runway, females0.90.91.30.8-1.1-1.0-0.7
Run reversals in cocaine runway, males0.90.91.60.9-1.3-0.9-0.6
Latency to leave start box in cocaine runway0.00.00.1-0.20.10.30.1
Latency to leave start box in cocaine runway, F0.50.50.8-0.80.60.90.6
Latency to leave start box in cocaine runway, M0.70.70.70.8-0.9-0.8-0.7
Std. dev. time between licks in bursts0.81.11.80.8-1.3-1.1-0.8
Total sessions with >9 infusions0.70.90.9-1.01.00.81.0
Short access day 1 total inactive lever presses0.40.50.7-0.70.70.50.8
Short access day 10 total inactive lever presses0.10.10.30.4-0.2-0.3-0.6
Short access day 1 total infusions1.11.51.9-1.31.41.30.9
Short access day 10 total infusions1.21.51.7-1.31.21.11.3
Short access total infusions1.72.12.4-1.51.51.41.3
Short access day 1 locomotion0.10.10.1-0.40.40.20.2
Short access day 10 total locomotion0.00.00.1-0.0-0.2-0.30.1
Short access total locomotion0.10.10.2-0.30.2-0.00.4
One hour access (0.3 mA shock)2.02.32.6-1.61.41.61.5
Compulsive drug intake0.10.10.2-0.1-0.50.00.3
One hour access (shock baseline)0.81.21.6-1.21.31.10.9
Social response proportion1.71.92.2-1.51.21.41.4
Social responses0.10.10.2-0.40.10.30.2
Social time0.60.80.90.9-0.7-1.0-0.9
Soleus weight0.10.40.70.5-0.8-0.5-0.6
Bone: stiffness3.25.26.1-2.12.52.22.3
Tibialis anterior weight0.00.10.3-0.10.60.10.3
Time to tail flick, vehicle, before self-admin0.50.50.70.6-0.8-0.6-0.8
Time to tail flick, vehicle, after self-admin0.00.00.10.1-0.3-0.10.1
Time to tail flick, test, before self-admin1.51.61.81.3-1.4-1.3-1.1
Time to tail flick, test, after self-admin1.81.93.71.2-1.9-1.2-0.9
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.50.70.50.7
Delta time to tail flick, test, before/after SA0.10.10.20.2-0.5-0.1-0.1
Tibia length2.05.66.3-2.32.52.32.3
Ambulatory time before self-admin0.10.20.60.3-0.2-0.3-0.8
Ambulatory time after self-admin0.50.60.9-0.90.70.80.5
Bone: tissue strength0.10.10.10.4-0.2-0.2-0.4
Total heroin consumption0.00.00.1-0.1-0.40.10.1
Bone: trabecular number0.20.30.40.6-0.5-0.6-0.6
Bone: trabecular spacing0.10.10.10.3-0.2-0.3-0.3
Bone: trabecular thickness0.20.20.40.5-0.4-0.4-0.6
Bone: trabecular tissue density0.10.20.4-0.30.60.30.4
Water consumed over 24 hours0.00.00.10.0-0.20.1-0.2
Number of responses in last shaping day1.01.11.61.2-0.5-1.1-1.3