C5h1orf127

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr5_164374718_164375873 0.02 0.02 2.1e-03 0.01 0.01 -0 0.01 9.8e-03 1.3e-02 4.1e-01 1.6e-02
2 Liver mRNA stability C5h1orf127 0.02 0.02 2.4e-03 0.01 0.01 0.01 0.01 9.2e-03 1.9e-02 5.3e-02 2.1e-02
3 Liver gene expression C5h1orf127 0.1 0.07 6.2e-10 0.07 0.06 0.06 0.07 1.7e-08 9.6e-08 3.3e-07 2.0e-08
4 Adipose gene expression C5h1orf127 0.04 0.04 4.6e-04 0.02 0.02 0.01 0.02 1.6e-03 4.4e-03 4.2e-02 3.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.1-0.20.30.20.2
Area under the delay curve0.91.32.0-1.40.81.30.9
BMI with tail0.00.10.1-0.10.30.1-0.4
BMI without tail0.00.20.30.5-0.2-0.6-0.2
Body weight0.31.31.71.1-0.8-1.3-1.3
Weight adjusted by age0.82.22.81.7-1.4-1.6-1.2
Bone surface0.40.80.91.0-0.8-0.9-0.8
Bone volume0.10.20.20.4-0.4-0.5-0.3
Breakpoint value in progressive ratio session0.20.40.70.60.1-0.7-0.8
Number of licking bursts0.51.61.8-1.21.31.21.4
Context. condit. distance diff. score4.04.95.4-2.32.02.32.2
Locomotion velocity, session 10.10.10.3-0.20.50.20.3
Locomotion distance, session 10.00.00.1-0.00.30.10.1
Locomotion velocity, session 20.40.50.6-0.80.70.70.7
Locomotion distance, session 20.10.10.20.4-0.1-0.4-0.3
Locomotion velocity, session 30.81.01.0-1.01.00.91.0
Locomotion distance, session 30.50.60.7-0.80.70.80.8
Stereotopy head waving bouts, day 30.00.00.10.20.1-0.2-0.1
Stereotopy head waving duration, day 30.10.10.20.4-0.2-0.4-0.4
Locomotion velocity, session 70.00.00.0-0.10.10.10.1
Locomotion distance, session 70.10.10.20.4-0.2-0.4-0.4
Stereotopy head waving bouts, day 72.22.63.0-1.61.41.61.7
Stereotopy head waving duration, day 71.11.41.8-1.20.91.21.3
Locomotion velocity, session 82.32.83.6-1.61.91.61.6
Locomotion distance, session 82.23.23.6-1.81.91.71.8
Degree of sensitization distance0.30.30.40.6-0.4-0.6-0.6
Degree of sensitization stereotypy0.80.91.1-1.00.71.01.1
Conditioned locomotion3.44.04.3-2.01.92.12.0
Cocaine response after cond. corrected0.60.91.11.0-0.9-1.0-0.9
Cocaine response after cond. not corrected0.60.81.01.0-0.9-0.9-0.8
Cocaine response before conditioning0.00.00.00.00.0-0.1-0.1
Saline control response0.60.81.11.0-0.6-0.9-0.9
Bone: connectivity density0.00.00.00.10.10.10.1
Bone: cortical apparent density1.82.84.51.4-2.1-1.5-1.6
Bone: cortical area1.22.02.11.4-1.2-1.5-1.4
Bone: cortical porosity1.11.21.4-1.01.21.01.1
Bone: cortical porosity0.80.81.1-0.81.10.91.0
Bone: cortical thickness0.61.01.11.0-0.9-1.0-1.0
Bone: cortical thickness0.30.30.40.6-0.6-0.6-0.5
Bone: cortical tissue density1.82.84.41.4-2.1-1.5-1.6
Condit. Reinf. active minus inactive responses0.80.91.11.0-0.8-1.0-1.0
Condit. Reinf. active-inactive response ratio2.32.53.01.5-1.7-1.5-1.5
Condit. Reinf. active responses0.00.00.00.00.1-0.1-0.1
Condit. Reinf. inactive responses3.03.94.2-2.02.02.02.0
Incentive salience index mean3.24.14.42.0-1.9-2.1-2.1
Condit. Reinf. lever presses2.84.24.52.0-2.0-2.1-2.0
Condit. Reinf. active minus inactive responses0.50.81.0-1.00.80.81.0
Condit. Reinf. active-inactive response ratio0.20.40.5-0.70.40.50.7
Condit. Reinf. active responses0.81.21.4-1.21.01.01.1
Condit. Reinf. inactive responses0.00.00.10.2-0.1-0.3-0.2
Condit. Reinf. lever presses0.00.00.2-0.10.40.10.1
Condit. Reinf. lever reinforcers received0.71.01.2-1.11.00.91.1
Conditioned reinforcement - actives0.31.11.3-0.91.11.01.1
Conditioned reinforcement - inactives0.00.10.2-0.30.00.20.4
Conditioned locomotion0.71.11.3-0.91.11.01.1
Patch foraging indifference point 0 sec0.30.91.21.1-0.8-1.0-0.9
Patch foraging indifference point AUC0.20.50.80.6-0.9-0.6-0.7
Delay disc. indifference point, 0s delay1.11.21.5-1.20.71.21.1
Delay disc. indifference point, 16s delay0.91.31.6-1.31.21.20.9
Delay disc. indifference point, 2s delay0.91.01.6-1.10.41.01.3
Delay disc. indifference point, 24s delay0.30.61.30.6-0.3-0.6-1.1
Delay disc. indifference point, 4s delay0.60.61.0-1.00.30.90.8
Delay disc. indifference point, 8s delay0.20.30.5-0.70.40.70.3
Indifference point function ln k0.10.20.3-0.50.30.40.5
Indifference point function log k0.10.20.3-0.50.30.40.5
Patch foraging total patch changes 0 sec0.31.01.31.1-0.7-1.1-1.0
Patch foraging total patch changes 12 sec1.01.31.51.2-1.0-1.2-1.2
Patch foraging total patch changes 18 sec0.30.81.00.9-0.7-1.0-1.0
Patch foraging total patch changes 24 sec0.30.91.31.0-0.8-0.9-1.1
Patch foraging total patch changes 6 sec1.72.93.31.6-1.8-1.7-1.6
Patch foraging time to switch 0 sec0.52.02.71.5-0.9-1.7-1.4
Patch foraging water rate 0 sec0.41.72.2-1.40.91.51.3
Patch foraging water rate 12 sec0.00.10.1-0.20.10.40.3
Patch foraging water rate 18 sec0.00.00.00.2-0.2-0.1-0.2
Patch foraging water rate 24 sec0.30.40.50.6-0.7-0.5-0.6
Patch foraging water rate 6 sec0.50.71.0-0.80.81.00.8
Seeking ratio, delayed vs. immediate footshock0.10.10.20.4-0.0-0.3-0.3
Distance traveled before self-admin0.00.10.3-0.10.10.10.6
Distance traveled after self-admin0.00.10.10.3-0.3-0.30.0
Extensor digitorum longus weight0.20.60.7-0.80.80.80.7
Bone: elastic displacement5.97.59.2-2.63.02.72.7
Bone: elastic work3.64.76.0-2.02.42.12.1
Bone: endosteal estimation0.92.22.61.5-1.3-1.6-1.5
Bone: endosteal perimeter0.61.41.71.2-1.0-1.3-1.2
Epididymis fat weight0.83.85.22.0-1.5-2.0-2.3
Delta time in closed arm before/after self-admin0.00.00.10.0-0.2-0.20.3
Delta time in open arm before/after self-admin0.10.10.40.40.1-0.3-0.6
Diff in mean of infusions in LGA sessions0.10.20.3-0.40.50.40.6
Delay discount exponential model param0.81.11.61.3-0.7-1.2-0.8
Extinction: sum of active levers before priming0.00.00.1-0.1-0.20.10.3
Active lever presses in extinction session 60.10.10.20.4-0.2-0.4-0.3
Bone: final force0.91.51.71.1-1.3-1.2-1.2
Bone: final moment0.40.60.80.7-0.9-0.8-0.7
Food consumed during 24 hour testing period0.00.00.00.10.1-0.20.1
Glucose0.10.10.2-0.30.30.40.1
Heart weight14.323.028.6-4.85.34.54.4
Delay discount hyperbolic model param1.11.42.11.4-0.8-1.3-1.0
Intermittent access intake day 1-15 change0.10.50.8-0.80.50.60.9
Intermittent access intake escalation0.10.40.8-0.70.30.50.9
Intermittent access intake escalation 20.30.50.6-0.80.70.50.7
Intermitt. access day 1 inactive lever presses0.00.10.10.3-0.3-0.3-0.3
Intermitt. access day 15 inactive lever presses0.10.40.60.8-0.6-0.7-0.4
Intermitt. access escalation Index0.00.10.2-0.20.40.10.2
Intermittent access day 1 total infusions1.13.34.02.0-1.9-1.8-1.6
Intermittent access day 15 total infusions0.71.82.61.4-1.6-1.4-0.9
Intermittent access terminal intake (last 3 days)2.84.95.52.3-2.2-2.3-2.0
Intermittent access total infusions4.14.95.42.3-2.3-2.2-1.9
Intermittent access day 1 locomotion2.64.85.42.3-2.1-2.2-2.0
Intermittent access day 15 total locomotion0.31.01.41.2-1.0-1.0-0.8
Intermittent access total locomotion2.32.73.21.8-1.6-1.7-1.4
Intermittent access standard deviation0.00.20.20.5-0.4-0.4-0.4
Left kidney weight0.00.00.1-0.10.2-0.0-0.2
Right kidney weight0.00.10.10.10.4-0.1-0.2
Cocaine induced anxiety0.41.01.3-0.91.10.81.1
Post-drug Anxiety0.91.01.7-0.90.90.91.3
Baseline Anxiety0.10.20.40.4-0.6-0.4-0.3
Tail length0.31.72.61.5-1.1-1.6-0.9
Length with tail0.62.53.41.7-1.3-1.8-1.5
Length without tail0.10.30.6-0.60.80.50.2
Times rat made contact with spout0.10.10.20.4-0.2-0.5-0.3
Lifetime Intake3.84.75.32.3-2.2-2.2-1.9
Liver weight, left4.37.49.02.8-2.3-2.8-3.0
Liver weight, right2.84.95.82.3-1.9-2.2-2.4
Locomotor activity3.35.26.1-2.22.52.22.2
Locomotor testing distance1.23.03.4-1.71.81.71.7
Locomotor testing rearing0.10.40.40.6-0.5-0.6-0.6
Locomotion in novel chamber1.52.12.9-1.70.91.61.3
Locomotion in novel chamber post-restriction1.95.66.5-2.52.12.32.5
Fecal boli incidents, locomotor time 10.82.02.61.6-1.3-1.4-1.3
Change in fecal boli incidents, locomotor task1.81.92.2-1.51.31.31.5
Time >=10cm from walls, locomotor time 10.10.10.1-0.20.20.20.3
Bouts of movement, locomotor time 11.41.82.11.3-1.4-1.4-1.2
Total resting periods, locomotor time 12.52.93.01.7-1.7-1.7-1.7
Rest time, locomotor task time 10.30.50.6-0.70.70.80.6
Distance moved, locomotor task time 10.00.10.20.00.0-0.40.3
Vertical activity count, locomotor time 10.00.20.4-0.40.1-0.00.6
Time >=10cm from walls, locomotor time 20.30.81.40.9-1.2-0.9-0.4
Bouts of movement, locomotor time 20.00.10.20.2-0.20.1-0.4
Total resting periods, locomotor time 20.00.00.1-0.20.00.4-0.1
Rest time, locomotor task time 21.11.92.6-1.41.61.60.8
Distance moved, locomotor task time 20.50.71.40.8-0.8-1.2-0.3
Vertical activity count, locomotor time 20.00.10.3-0.1-0.0-0.20.5
Light reinforcement 10.10.60.9-0.80.50.81.0
Light reinforcement 20.00.00.0-0.0-0.0-0.00.2
Bone: marrow area0.71.82.11.4-1.1-1.5-1.3
Bone: maximum diameter1.02.02.31.4-1.2-1.5-1.5
Bone: maximum force1.12.12.21.4-1.4-1.5-1.4
Bone: maximum moment0.40.80.90.9-0.9-1.0-0.8
Mean time between licks in bursts0.21.21.51.1-1.0-1.0-1.2
Mean num. licks in bursts1.12.93.21.7-1.6-1.8-1.7
Cd content in liver0.20.20.3-0.50.20.30.6
Co content in liver0.80.91.0-1.01.01.00.9
Cu content in liver0.60.70.9-0.90.90.90.7
Fe content in liver0.30.40.60.5-0.6-0.5-0.7
K content in liver0.20.20.3-0.40.60.40.4
Mg content in liver0.20.30.40.6-0.3-0.6-0.6
Mn content in liver0.60.70.90.9-0.7-0.8-1.0
Na content in liver0.30.40.7-0.50.80.60.4
Rb content in liver0.20.20.40.5-0.2-0.6-0.5
Se content in liver2.32.72.81.6-1.7-1.6-1.7
Sr content in liver0.20.20.50.3-0.7-0.3-0.4
Zn content in liver0.10.10.10.3-0.2-0.3-0.3
Bone: minimum diameter2.54.75.32.3-2.0-2.2-2.2
Time in familiar zone, hab. session 10.50.50.5-0.70.70.70.7
Time in novel zone, hab. session 10.40.50.50.7-0.6-0.7-0.7
Total zone transitions, hab. session 10.10.20.30.60.0-0.5-0.3
Total locomotion distance, hab. session 10.10.10.4-0.10.60.10.3
Locomotion velocity, hab. session 10.20.30.7-0.30.90.30.5
Time in familiar zone, hab. session 20.91.01.2-1.10.71.01.1
Time in novel zone, hab. session 20.00.00.10.2-0.0-0.2-0.3
Total zone transitions, hab. session 20.70.91.2-0.91.10.91.0
Total locomotion distance, hab. session 21.62.12.2-1.41.51.41.5
Locomotion velocity, hab. session 20.81.11.4-0.91.21.01.1
Novel to familiar place preference ratio0.60.80.91.0-0.9-0.9-0.9
Novelty place preference0.50.60.70.8-0.8-0.8-0.7
Time in novel zone, NPP test0.30.40.50.7-0.7-0.6-0.6
Total zone transitions, NPP test2.23.33.5-1.81.81.71.9
Total locomotion distance, NPP test2.23.13.4-1.71.81.71.9
Locomotion velocity, NPP test2.02.93.5-1.61.91.61.7
Intraocular pressure0.30.50.80.7-0.8-0.9-0.6
Delta distance traveled before/after self-admin0.40.40.70.7-0.4-0.6-0.8
Delta ambulatory time before/after self-admin0.81.31.71.3-0.8-1.1-1.3
Parametrial fat weight1.02.42.51.6-1.6-1.5-1.6
Pavlov. Cond. lever latency0.40.60.7-0.70.60.80.8
Pavlov. Cond. magazine entry latency1.31.72.51.1-1.6-1.2-1.3
Pavlov. Cond. change in total contacts0.30.40.50.6-0.5-0.6-0.7
Pavlov. Cond. index score1.41.82.31.2-1.5-1.3-1.3
Pavlov. Cond. latency score0.81.01.20.9-1.1-1.0-1.0
Pavlov. Cond. lever contacts0.80.91.10.9-1.1-1.0-1.0
Pavlov. Cond. magazine entry number1.01.32.2-1.01.51.01.0
Pavlov. Cond. intertrial magazine entries1.21.52.0-1.11.41.11.1
Pavlov. Cond. lever-magazine prob. diff.1.82.22.81.3-1.7-1.5-1.5
Pavlov. Cond. response bias1.11.42.31.0-1.5-1.1-1.1
Pavlov. Cond. lever latency0.50.70.90.9-1.0-0.8-0.8
Pavlov. Cond. magazine entry latency0.00.00.00.2-0.2-0.1-0.2
Pavlov. Cond. change in total contacts0.00.00.1-0.10.20.10.2
Pavlov. Cond. index score0.00.00.0-0.10.20.10.0
Pavlov. Cond. latency score0.00.00.0-0.00.10.10.0
Pavlov. Cond. lever contacts0.50.70.9-0.81.00.80.8
Pavlov. Cond. magazine entry number0.10.10.10.3-0.2-0.4-0.3
Pavlov. Cond. intertrial magazine entries0.71.51.61.2-1.2-1.3-1.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.00.10.0-0.0
Pavlov. Cond. response bias0.50.71.0-0.91.00.80.8
Time in closed arm before self-admin0.20.30.30.5-0.6-0.4-0.5
Time in closed arm after self-admin0.10.10.50.2-0.7-0.30.1
Time in open arm before self-admin1.72.12.4-1.51.41.41.5
Time in open arm after self-admin0.91.01.8-0.91.30.90.6
Bone: periosteal estimation1.53.54.02.0-1.7-2.0-1.9
Bone: periosteal perimeter0.51.01.31.1-0.8-1.1-1.0
Bone: post-yield work0.71.21.51.1-1.2-1.2-1.0
Progressive ratio test 1 active lever presses0.20.40.80.6-0.9-0.4-0.3
Progressive ratio test 1 breakpoint0.30.41.00.7-1.0-0.5-0.4
Progressive ratio test 1 inactive lever presses0.10.30.70.5-0.9-0.5-0.2
Progressive ratio test 2 active lever presses2.43.44.21.9-2.1-1.9-1.6
Progressive ratio test 2 breakpoint2.83.54.31.9-2.1-1.9-1.6
Progressive ratio test 2 inactive lever presses0.31.01.71.0-1.3-1.0-0.5
Incentive Sensitization - Responses0.61.82.01.4-1.3-1.4-1.2
Incentive Sensitization - Breakpoint0.92.02.31.5-1.4-1.5-1.3
Sum of active levers in priming session hrs 5-60.10.10.20.3-0.1-0.4-0.1
Progressive ratio0.00.10.1-0.30.30.40.1
Food seeking constrained by brief footshock1.51.92.6-1.21.31.41.6
Seeking ratio, punishment vs. effort0.20.50.7-0.60.70.60.9
Retroperitoneal fat weight0.31.52.71.2-0.9-1.1-1.6
Reaction time number correct0.51.72.4-1.41.01.31.6
Reaction time mean minus median0.31.81.91.3-1.4-1.3-1.3
Reaction time mean minus median AUC0.00.20.30.6-0.3-0.6-0.4
Reaction time num false alarms0.10.20.60.1-0.8-0.2-0.1
Reaction time num false alarms AUC0.00.10.1-0.3-0.20.20.3
Reaction time trials correct on left0.51.72.4-1.41.01.31.6
Reaction time trials on left0.51.52.2-1.30.91.21.5
Reaction time mean0.10.10.20.4-0.4-0.4-0.3
Reaction time mean AUC0.10.30.30.6-0.5-0.5-0.5
Median of all reaction times0.00.00.00.1-0.1-0.10.1
Reaction time omissions1.01.62.01.4-1.0-1.2-1.4
Reaction time false alarm rate0.30.30.60.5-0.8-0.5-0.5
Reaction time premature initiation rate2.74.35.32.0-2.0-1.9-2.3
Reaction time premature initiations0.51.41.91.1-1.4-1.1-1.2
Std. dev. reaction times0.41.31.51.2-1.1-1.1-1.1
Reaction time trials completed0.51.52.2-1.30.91.21.5
Reaction time trials AUC0.51.62.4-1.40.91.21.5
Run reversals in cocaine runway, females0.80.91.3-0.81.11.00.7
Run reversals in cocaine runway, males0.80.91.6-0.91.30.90.6
Latency to leave start box in cocaine runway0.00.00.10.2-0.1-0.3-0.1
Latency to leave start box in cocaine runway, F0.40.50.80.8-0.6-0.9-0.6
Latency to leave start box in cocaine runway, M0.70.70.7-0.80.90.80.7
Std. dev. time between licks in bursts0.61.11.8-0.81.31.10.8
Total sessions with >9 infusions0.70.90.91.0-1.0-0.8-1.0
Short access day 1 total inactive lever presses0.20.50.70.7-0.7-0.5-0.8
Short access day 10 total inactive lever presses0.00.10.3-0.40.20.30.6
Short access day 1 total infusions0.81.51.91.3-1.4-1.3-0.9
Short access day 10 total infusions0.91.51.71.3-1.2-1.1-1.3
Short access total infusions1.52.12.41.5-1.5-1.4-1.3
Short access day 1 locomotion0.10.10.10.4-0.4-0.2-0.2
Short access day 10 total locomotion0.00.00.10.00.20.3-0.1
Short access total locomotion0.10.10.20.3-0.20.0-0.4
One hour access (0.3 mA shock)2.02.32.61.6-1.4-1.6-1.5
Compulsive drug intake0.10.10.20.10.5-0.0-0.3
One hour access (shock baseline)0.51.21.61.2-1.3-1.1-0.9
Social response proportion1.51.92.21.5-1.2-1.4-1.4
Social responses0.10.10.20.4-0.1-0.3-0.2
Social time0.50.80.9-0.90.71.00.9
Soleus weight0.10.40.7-0.50.80.50.6
Bone: stiffness2.85.26.12.1-2.5-2.2-2.3
Tibialis anterior weight0.00.10.30.1-0.6-0.1-0.3
Time to tail flick, vehicle, before self-admin0.40.50.7-0.60.80.60.8
Time to tail flick, vehicle, after self-admin0.00.00.1-0.10.30.1-0.1
Time to tail flick, test, before self-admin1.41.61.8-1.31.41.31.1
Time to tail flick, test, after self-admin1.81.93.7-1.21.91.20.9
Delta time to tail flick, vehicle, before/after SA0.40.40.50.5-0.7-0.5-0.7
Delta time to tail flick, test, before/after SA0.10.10.2-0.20.50.10.1
Tibia length2.05.66.32.3-2.5-2.3-2.3
Ambulatory time before self-admin0.10.20.6-0.30.20.30.8
Ambulatory time after self-admin0.40.60.90.9-0.7-0.8-0.5
Bone: tissue strength0.10.10.1-0.40.20.20.4
Total heroin consumption0.00.00.10.10.4-0.1-0.1
Bone: trabecular number0.20.30.4-0.60.50.60.6
Bone: trabecular spacing0.00.10.1-0.30.20.30.3
Bone: trabecular thickness0.20.20.4-0.50.40.40.6
Bone: trabecular tissue density0.10.20.40.3-0.6-0.3-0.4
Water consumed over 24 hours0.00.00.1-0.00.2-0.10.2
Number of responses in last shaping day0.91.11.6-1.20.51.11.3