C2h4orf54

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC gene expression C2h4orf54 0.28 0.12 5.4e-04 0.1 0.07 0.09 0.08 2.7e-03 9.1e-03 4.5e-03 6.1e-03
2 Brain gene expression C2h4orf54 0.08 0.04 1.9e-07 0.06 0.07 0.07 0.08 4.0e-06 3.8e-07 9.7e-07 1.2e-07
3 PL mRNA stability C2h4orf54 0.03 0.02 5.6e-03 0.01 0.02 0.01 0.01 3.7e-02 1.5e-03 3.8e-02 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.61.81.31.3-1.1
Area under the delay curve0.10.10.20.30.30.4
BMI with tail1.24.47.4-2.7-2.3-0.7
BMI without tail0.73.65.8-2.2-2.4-0.3
Body weight1.77.411.9-3.5-3.1-0.7
Weight adjusted by age0.10.20.60.0-0.10.8
Bone surface0.40.81.11.10.8-0.7
Bone volume0.30.61.31.20.5-0.4
Breakpoint value in progressive ratio session0.51.01.8-1.00.2-1.3
Number of licking bursts0.61.73.9-2.0-0.4-1.1
Context. condit. distance diff. score0.70.81.7-0.40.8-1.3
Locomotion velocity, session 12.32.63.5-1.4-1.91.5
Locomotion distance, session 12.12.74.4-2.1-1.51.2
Locomotion velocity, session 20.10.10.1-0.2-0.30.4
Locomotion distance, session 22.94.15.9-1.8-1.82.4
Locomotion velocity, session 31.92.22.8-1.6-1.71.1
Locomotion distance, session 30.10.20.4-0.6-0.30.1
Stereotopy head waving bouts, day 31.31.62.3-1.1-1.51.1
Stereotopy head waving duration, day 31.41.82.9-1.4-1.70.5
Locomotion velocity, session 71.11.32.7-1.6-1.00.2
Locomotion distance, session 70.81.02.5-1.6-0.1-0.8
Stereotopy head waving bouts, day 72.02.35.10.9-1.02.3
Stereotopy head waving duration, day 72.42.96.90.7-1.22.6
Locomotion velocity, session 80.20.20.3-0.6-0.30.5
Locomotion distance, session 81.82.66.3-2.5-1.10.5
Degree of sensitization distance0.80.81.8-0.70.6-1.3
Degree of sensitization stereotypy2.02.24.21.5-0.62.0
Conditioned locomotion1.51.83.92.00.41.2
Cocaine response after cond. corrected0.10.20.50.7-0.10.2
Cocaine response after cond. not corrected0.30.51.21.10.40.0
Cocaine response before conditioning0.00.00.1-0.10.2-0.1
Saline control response1.52.14.5-0.3-1.32.1
Bone: connectivity density1.82.94.41.42.1-1.5
Bone: cortical apparent density0.20.30.7-0.9-0.3-0.2
Bone: cortical area0.71.11.6-0.8-1.0-1.2
Bone: cortical porosity0.80.91.5-0.3-1.21.0
Bone: cortical porosity1.21.32.5-0.6-1.61.1
Bone: cortical thickness0.71.22.5-0.8-0.8-1.6
Bone: cortical thickness0.30.30.7-0.1-0.8-0.4
Bone: cortical tissue density0.20.30.8-0.9-0.4-0.2
Condit. Reinf. active minus inactive responses2.62.95.7-2.4-1.70.6
Condit. Reinf. active-inactive response ratio5.45.811.7-3.4-2.40.1
Condit. Reinf. active responses1.01.31.6-1.2-1.01.3
Condit. Reinf. inactive responses1.51.93.41.90.81.2
Incentive salience index mean1.31.63.3-1.8-1.20.1
Condit. Reinf. lever presses0.00.00.1-0.1-0.2-0.2
Condit. Reinf. active minus inactive responses0.20.30.70.40.0-0.8
Condit. Reinf. active-inactive response ratio0.40.72.0-0.30.1-1.4
Condit. Reinf. active responses0.10.20.50.1-0.3-0.7
Condit. Reinf. inactive responses0.20.30.6-0.4-0.80.4
Condit. Reinf. lever presses0.30.51.50.10.1-1.2
Condit. Reinf. lever reinforcers received0.10.20.50.3-0.1-0.7
Conditioned reinforcement - actives0.20.72.0-0.2-0.31.4
Conditioned reinforcement - inactives0.20.61.00.80.31.0
Conditioned locomotion1.52.23.51.81.9-0.3
Patch foraging indifference point 0 sec0.30.71.70.41.3-0.6
Patch foraging indifference point AUC0.30.61.6-0.6-0.0-1.3
Delay disc. indifference point, 0s delay1.21.32.11.51.3-0.4
Delay disc. indifference point, 16s delay0.10.10.4-0.6-0.20.0
Delay disc. indifference point, 2s delay1.82.04.22.01.20.5
Delay disc. indifference point, 24s delay0.40.71.41.20.80.2
Delay disc. indifference point, 4s delay0.20.20.40.30.6-0.2
Delay disc. indifference point, 8s delay0.81.33.0-0.5-0.91.7
Indifference point function ln k0.31.01.7-1.3-0.90.8
Indifference point function log k0.31.01.7-1.3-0.90.8
Patch foraging total patch changes 0 sec0.20.61.40.11.2-0.7
Patch foraging total patch changes 12 sec0.40.51.3-0.20.5-1.2
Patch foraging total patch changes 18 sec0.30.61.2-0.20.8-1.1
Patch foraging total patch changes 24 sec0.00.10.2-0.5-0.30.2
Patch foraging total patch changes 6 sec2.03.37.7-0.01.5-2.8
Patch foraging time to switch 0 sec0.31.02.11.40.60.8
Patch foraging water rate 0 sec0.20.81.5-1.0-0.2-1.2
Patch foraging water rate 12 sec0.62.64.4-2.1-1.80.2
Patch foraging water rate 18 sec0.92.03.5-1.5-0.3-1.9
Patch foraging water rate 24 sec1.62.34.8-2.2-0.7-1.2
Patch foraging water rate 6 sec4.97.315.3-3.9-2.5-0.3
Seeking ratio, delayed vs. immediate footshock2.43.46.52.52.00.1
Distance traveled before self-admin0.10.10.30.60.10.2
Distance traveled after self-admin0.00.00.0-0.10.2-0.0
Extensor digitorum longus weight3.011.925.1-3.0-5.01.4
Bone: elastic displacement0.30.40.7-0.5-0.9-0.3
Bone: elastic work1.11.51.8-1.3-1.3-1.0
Bone: endosteal estimation0.00.10.1-0.3-0.40.1
Bone: endosteal perimeter0.10.40.7-0.4-0.90.4
Epididymis fat weight0.31.83.4-1.8-1.3-0.4
Delta time in closed arm before/after self-admin1.41.31.6-1.2-1.01.3
Delta time in open arm before/after self-admin1.31.53.40.6-0.91.8
Diff in mean of infusions in LGA sessions0.91.63.1-0.61.1-1.8
Delay discount exponential model param0.10.10.2-0.4-0.3-0.4
Extinction: sum of active levers before priming0.30.51.2-0.5-0.0-1.1
Active lever presses in extinction session 61.11.12.20.11.5-1.1
Bone: final force0.40.60.9-1.0-0.5-0.8
Bone: final moment0.40.60.9-0.8-0.4-0.9
Food consumed during 24 hour testing period0.81.52.4-1.5-1.50.4
Glucose1.01.52.9-1.7-1.0-0.8
Heart weight0.50.71.6-0.8-1.3-0.2
Delay discount hyperbolic model param0.20.20.3-0.6-0.5-0.4
Intermittent access intake day 1-15 change0.10.30.60.80.70.1
Intermittent access intake escalation0.21.11.61.21.3-0.5
Intermittent access intake escalation 20.61.01.20.81.1-1.0
Intermitt. access day 1 inactive lever presses0.00.40.5-0.6-0.70.5
Intermitt. access day 15 inactive lever presses0.10.71.4-0.5-1.20.7
Intermitt. access escalation Index0.10.40.80.4-0.60.9
Intermittent access day 1 total infusions0.51.63.1-1.8-1.30.2
Intermittent access day 15 total infusions0.10.30.6-0.8-0.1-0.6
Intermittent access terminal intake (last 3 days)0.50.92.3-1.5-0.5-0.3
Intermittent access total infusions1.21.53.5-1.9-0.9-0.2
Intermittent access day 1 locomotion0.30.61.3-1.2-0.7-0.3
Intermittent access day 15 total locomotion0.20.71.00.61.0-0.9
Intermittent access total locomotion0.20.20.7-0.20.2-0.8
Intermittent access standard deviation0.10.40.8-0.7-0.0-0.9
Left kidney weight0.32.74.2-2.0-2.1-0.3
Right kidney weight0.42.64.2-1.9-2.0-0.2
Cocaine induced anxiety0.10.30.5-0.10.5-0.7
Post-drug Anxiety0.30.40.60.50.8-0.5
Baseline Anxiety0.10.20.3-0.3-0.50.3
Tail length0.00.20.6-0.1-0.70.1
Length with tail0.41.62.4-1.5-1.6-0.3
Length without tail0.20.81.5-1.2-0.8-0.5
Times rat made contact with spout0.50.51.3-0.30.5-1.1
Lifetime Intake1.21.53.4-1.9-1.00.2
Liver weight, left0.10.20.4-0.7-0.4-0.1
Liver weight, right0.40.71.5-0.90.0-1.2
Locomotor activity0.10.10.2-0.50.1-0.3
Locomotor testing distance0.10.30.8-0.9-0.50.2
Locomotor testing rearing0.62.14.0-2.0-0.1-1.5
Locomotion in novel chamber5.87.811.43.03.4-1.8
Locomotion in novel chamber post-restriction0.10.20.50.50.20.7
Fecal boli incidents, locomotor time 10.20.61.5-0.2-0.41.2
Change in fecal boli incidents, locomotor task0.30.30.5-0.7-0.3-0.6
Time >=10cm from walls, locomotor time 12.53.16.50.21.6-2.5
Bouts of movement, locomotor time 10.50.61.70.00.5-1.3
Total resting periods, locomotor time 10.20.30.7-0.30.2-0.8
Rest time, locomotor task time 10.30.51.20.5-0.41.1
Distance moved, locomotor task time 10.10.10.3-0.30.0-0.6
Vertical activity count, locomotor time 10.10.40.70.30.6-0.9
Time >=10cm from walls, locomotor time 20.51.52.4-1.1-1.50.9
Bouts of movement, locomotor time 20.31.21.81.21.4-0.4
Total resting periods, locomotor time 20.31.32.01.31.4-0.4
Rest time, locomotor task time 20.71.12.81.70.80.1
Distance moved, locomotor task time 20.10.10.2-0.4-0.30.4
Vertical activity count, locomotor time 20.00.00.00.1-0.00.1
Light reinforcement 10.52.13.9-2.0-1.60.0
Light reinforcement 20.00.00.1-0.0-0.30.2
Bone: marrow area0.00.00.1-0.2-0.30.0
Bone: maximum diameter0.10.30.7-0.2-0.3-0.8
Bone: maximum force0.40.91.2-1.1-0.4-1.1
Bone: maximum moment0.40.81.5-0.9-0.2-1.2
Mean time between licks in bursts0.10.50.9-0.70.2-1.0
Mean num. licks in bursts0.41.02.51.60.60.2
Cd content in liver0.80.91.8-0.9-0.2-1.3
Co content in liver4.35.17.6-2.8-2.51.1
Cu content in liver1.61.93.00.41.7-1.6
Fe content in liver1.41.84.12.01.00.5
K content in liver1.51.42.21.21.5-0.8
Mg content in liver0.40.40.7-0.10.8-0.7
Mn content in liver0.40.41.10.20.4-1.1
Na content in liver0.30.40.50.60.7-0.5
Rb content in liver0.10.10.3-0.1-0.20.5
Se content in liver0.40.41.01.00.40.3
Sr content in liver0.10.10.20.40.00.3
Zn content in liver18.922.036.22.76.0-4.8
Bone: minimum diameter1.42.75.0-1.8-2.2-0.0
Time in familiar zone, hab. session 10.10.10.40.1-0.20.6
Time in novel zone, hab. session 10.10.20.40.60.3-0.1
Total zone transitions, hab. session 13.24.55.7-1.8-2.12.4
Total locomotion distance, hab. session 10.40.50.7-0.9-0.50.8
Locomotion velocity, hab. session 10.40.51.2-1.1-0.50.3
Time in familiar zone, hab. session 20.50.50.80.90.2-0.9
Time in novel zone, hab. session 20.20.30.6-0.40.10.8
Total zone transitions, hab. session 21.92.43.5-1.9-1.51.2
Total locomotion distance, hab. session 20.50.71.8-1.3-0.6-0.0
Locomotion velocity, hab. session 20.40.61.5-1.2-0.40.0
Novel to familiar place preference ratio0.00.10.2-0.4-0.0-0.0
Novelty place preference0.10.10.2-0.5-0.0-0.1
Time in novel zone, NPP test0.10.10.2-0.4-0.0-0.2
Total zone transitions, NPP test1.92.94.8-2.2-1.80.8
Total locomotion distance, NPP test0.50.71.5-1.2-0.2-0.8
Locomotion velocity, NPP test0.71.01.9-1.4-0.3-0.9
Intraocular pressure0.40.61.61.30.20.5
Delta distance traveled before/after self-admin0.30.41.0-1.0-0.1-0.1
Delta ambulatory time before/after self-admin0.30.51.2-1.10.0-0.6
Parametrial fat weight0.20.51.1-0.00.7-1.0
Pavlov. Cond. lever latency0.81.01.5-1.1-1.20.5
Pavlov. Cond. magazine entry latency0.30.40.90.0-0.50.9
Pavlov. Cond. change in total contacts0.10.10.4-0.10.20.6
Pavlov. Cond. index score0.30.40.50.70.7-0.2
Pavlov. Cond. latency score0.50.61.00.91.0-0.3
Pavlov. Cond. lever contacts0.60.70.90.71.0-0.8
Pavlov. Cond. magazine entry number0.50.70.90.60.9-0.9
Pavlov. Cond. intertrial magazine entries0.20.30.50.30.7-0.5
Pavlov. Cond. lever-magazine prob. diff.0.30.30.60.60.8-0.3
Pavlov. Cond. response bias0.10.10.2-0.1-0.20.4
Pavlov. Cond. lever latency0.81.22.21.51.00.6
Pavlov. Cond. magazine entry latency0.10.10.10.30.20.3
Pavlov. Cond. change in total contacts0.20.51.0-0.60.1-1.0
Pavlov. Cond. index score0.10.20.40.20.2-0.6
Pavlov. Cond. latency score0.20.30.50.30.5-0.7
Pavlov. Cond. lever contacts0.71.01.6-1.3-1.1-0.6
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.30.1
Pavlov. Cond. intertrial magazine entries0.10.30.90.20.0-0.9
Pavlov. Cond. lever-magazine prob. diff.0.10.20.40.20.3-0.7
Pavlov. Cond. response bias0.71.01.7-1.1-1.30.0
Time in closed arm before self-admin0.10.20.4-0.30.3-0.6
Time in closed arm after self-admin0.60.71.3-0.60.8-1.1
Time in open arm before self-admin0.30.40.8-0.5-0.1-0.9
Time in open arm after self-admin0.80.81.60.5-0.81.3
Bone: periosteal estimation0.30.71.2-0.9-1.1-0.5
Bone: periosteal perimeter0.40.81.9-0.6-1.40.2
Bone: post-yield work0.20.41.00.31.0-0.3
Progressive ratio test 1 active lever presses2.54.46.8-2.6-2.21.2
Progressive ratio test 1 breakpoint2.44.16.9-2.6-2.11.0
Progressive ratio test 1 inactive lever presses0.20.50.8-0.4-0.70.9
Progressive ratio test 2 active lever presses1.42.02.9-1.7-1.70.7
Progressive ratio test 2 breakpoint1.31.72.5-1.6-1.50.5
Progressive ratio test 2 inactive lever presses0.20.71.4-0.3-0.81.2
Incentive Sensitization - Responses0.10.41.01.00.50.1
Incentive Sensitization - Breakpoint0.20.41.01.00.50.0
Sum of active levers in priming session hrs 5-62.32.14.10.51.5-2.0
Progressive ratio0.10.30.40.6-0.40.5
Food seeking constrained by brief footshock1.21.52.1-1.5-0.9-1.2
Seeking ratio, punishment vs. effort0.40.91.9-1.4-0.1-0.8
Retroperitoneal fat weight0.20.91.1-1.1-0.9-0.9
Reaction time number correct0.00.20.3-0.6-0.4-0.1
Reaction time mean minus median0.21.33.01.70.60.8
Reaction time mean minus median AUC0.21.12.61.60.70.5
Reaction time num false alarms1.32.36.10.4-0.82.5
Reaction time num false alarms AUC1.22.76.70.2-1.22.6
Reaction time trials correct on left0.00.20.3-0.6-0.4-0.1
Reaction time trials on left0.00.10.2-0.4-0.3-0.1
Reaction time mean0.30.71.61.20.20.6
Reaction time mean AUC0.30.61.21.1-0.10.8
Median of all reaction times0.10.20.40.6-0.20.5
Reaction time omissions1.72.86.32.51.20.8
Reaction time false alarm rate1.11.53.90.6-0.62.0
Reaction time premature initiation rate1.32.13.9-1.0-2.01.1
Reaction time premature initiations0.92.95.2-1.3-2.31.3
Std. dev. reaction times0.62.14.72.21.00.6
Reaction time trials completed0.00.10.2-0.4-0.3-0.1
Reaction time trials AUC0.10.20.4-0.6-0.4-0.1
Run reversals in cocaine runway, females0.00.00.1-0.10.3-0.2
Run reversals in cocaine runway, males0.50.61.2-1.1-0.70.5
Latency to leave start box in cocaine runway0.30.40.80.00.9-0.7
Latency to leave start box in cocaine runway, F0.10.10.1-0.40.2-0.3
Latency to leave start box in cocaine runway, M1.41.32.30.71.5-1.1
Std. dev. time between licks in bursts0.40.71.9-1.40.1-0.5
Total sessions with >9 infusions1.41.72.8-1.7-1.01.1
Short access day 1 total inactive lever presses0.30.61.6-1.3-0.3-0.1
Short access day 10 total inactive lever presses0.21.32.41.51.10.6
Short access day 1 total infusions0.50.91.3-1.2-0.61.0
Short access day 10 total infusions0.91.52.8-1.7-1.00.9
Short access total infusions1.41.93.6-1.9-1.11.1
Short access day 1 locomotion0.50.82.4-1.5-0.3-0.0
Short access day 10 total locomotion0.10.20.4-0.30.4-0.7
Short access total locomotion0.20.20.3-0.50.5-0.5
One hour access (0.3 mA shock)0.10.20.4-0.20.2-0.6
Compulsive drug intake0.30.50.70.80.4-0.8
One hour access (shock baseline)0.10.40.8-0.9-0.50.3
Social response proportion0.81.02.11.40.60.7
Social responses0.70.91.80.60.8-1.3
Social time1.82.84.82.21.8-0.7
Soleus weight0.72.24.3-1.1-2.11.0
Bone: stiffness0.50.91.7-1.3-0.5-0.9
Tibialis anterior weight3.411.524.4-3.1-4.91.0
Time to tail flick, vehicle, before self-admin0.50.61.01.00.50.8
Time to tail flick, vehicle, after self-admin0.51.12.81.70.60.4
Time to tail flick, test, before self-admin1.01.22.71.60.90.0
Time to tail flick, test, after self-admin0.00.00.10.20.1-0.2
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.3-0.3-0.2
Delta time to tail flick, test, before/after SA0.70.92.1-1.4-0.8-0.1
Tibia length0.20.61.6-0.4-1.3-0.2
Ambulatory time before self-admin0.10.20.50.70.00.5
Ambulatory time after self-admin0.10.10.20.30.50.2
Bone: tissue strength1.01.01.5-1.2-0.2-1.2
Total heroin consumption0.50.61.10.40.6-1.1
Bone: trabecular number0.71.42.81.71.10.3
Bone: trabecular spacing0.71.02.5-0.40.4-1.6
Bone: trabecular thickness0.40.61.30.0-0.61.2
Bone: trabecular tissue density0.50.91.8-0.6-0.81.3
Water consumed over 24 hours0.20.30.6-0.8-0.6-0.2
Number of responses in last shaping day2.73.55.4-1.2-1.92.3