C15h8orf58

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS NM_001134571.3 0.02 0.02 8.7e-03 0.01 0.01 0.01 0.01 4.1e-02 6.2e-02 3.4e-02 7.0e-02
2 IL alternative TSS XM_063274432.1 0.17 0.16 5.2e-03 0.05 0.04 0.05 0.04 2.4e-02 3.9e-02 2.5e-02 3.5e-02
3 IL alternative TSS NM_001134571.3 0.17 0.15 6.4e-03 0.05 0.04 0.04 0.04 3.0e-02 4.9e-02 3.2e-02 4.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.42.32.51.61.6-1.4
Area under the delay curve0.10.10.1-0.4-0.30.3
BMI with tail0.41.51.7-1.1-1.21.3
BMI without tail0.00.00.0-0.1-0.10.0
Body weight0.62.83.2-1.6-1.61.8
Weight adjusted by age1.42.22.2-1.5-1.51.5
Bone surface0.71.21.31.11.2-1.1
Bone volume0.81.31.41.21.2-1.1
Breakpoint value in progressive ratio session0.10.10.2-0.2-0.50.2
Number of licking bursts0.00.00.0-0.10.0-0.0
Context. condit. distance diff. score0.81.01.01.01.0-1.0
Locomotion velocity, session 10.20.20.3-0.5-0.40.4
Locomotion distance, session 10.00.00.0-0.00.0-0.1
Locomotion velocity, session 20.00.00.10.20.3-0.2
Locomotion distance, session 20.00.00.10.10.2-0.3
Locomotion velocity, session 30.50.60.7-0.9-0.80.7
Locomotion distance, session 30.00.00.00.10.1-0.2
Stereotopy head waving bouts, day 30.80.91.0-1.0-1.00.8
Stereotopy head waving duration, day 32.63.13.2-1.8-1.81.7
Locomotion velocity, session 74.24.64.72.12.2-2.2
Locomotion distance, session 73.44.34.52.02.1-2.1
Stereotopy head waving bouts, day 71.41.51.6-1.2-1.21.3
Stereotopy head waving duration, day 72.02.42.6-1.5-1.51.6
Locomotion velocity, session 80.00.00.0-0.00.1-0.2
Locomotion distance, session 80.60.91.10.91.0-1.0
Degree of sensitization distance4.74.84.92.22.2-2.2
Degree of sensitization stereotypy0.91.01.2-1.0-1.01.1
Conditioned locomotion0.00.00.00.20.2-0.2
Cocaine response after cond. corrected0.30.30.4-0.5-0.70.5
Cocaine response after cond. not corrected0.20.20.3-0.4-0.50.4
Cocaine response before conditioning0.20.20.20.40.5-0.4
Saline control response0.10.10.20.40.3-0.4
Bone: connectivity density2.64.14.42.12.1-1.9
Bone: cortical apparent density0.10.10.10.30.2-0.4
Bone: cortical area0.00.00.00.10.1-0.1
Bone: cortical porosity1.11.21.3-1.1-1.11.1
Bone: cortical porosity0.60.70.7-0.9-0.80.8
Bone: cortical thickness0.00.00.00.00.0-0.2
Bone: cortical thickness0.00.00.00.00.0-0.1
Bone: cortical tissue density0.10.10.20.30.3-0.4
Condit. Reinf. active minus inactive responses0.60.70.8-0.9-0.90.7
Condit. Reinf. active-inactive response ratio2.52.73.1-1.8-1.71.4
Condit. Reinf. active responses0.00.00.0-0.2-0.1-0.0
Condit. Reinf. inactive responses2.53.03.31.81.8-1.6
Incentive salience index mean0.91.11.3-1.1-1.10.9
Condit. Reinf. lever presses0.30.50.7-0.8-0.70.5
Condit. Reinf. active minus inactive responses0.30.40.40.70.6-0.7
Condit. Reinf. active-inactive response ratio0.10.10.1-0.3-0.30.2
Condit. Reinf. active responses0.91.31.31.11.1-1.1
Condit. Reinf. inactive responses2.02.62.61.61.6-1.6
Condit. Reinf. lever presses0.10.20.30.40.5-0.4
Condit. Reinf. lever reinforcers received0.71.01.01.01.0-1.0
Conditioned reinforcement - actives1.01.71.81.31.3-1.3
Conditioned reinforcement - inactives3.24.74.92.22.1-2.2
Conditioned locomotion0.10.20.30.40.4-0.5
Patch foraging indifference point 0 sec1.83.33.71.91.7-1.8
Patch foraging indifference point AUC0.30.40.5-0.7-0.70.6
Delay disc. indifference point, 0s delay0.20.30.30.50.5-0.5
Delay disc. indifference point, 16s delay0.20.20.30.40.4-0.6
Delay disc. indifference point, 2s delay1.51.71.7-1.3-1.31.3
Delay disc. indifference point, 24s delay0.20.20.3-0.5-0.50.5
Delay disc. indifference point, 4s delay1.92.02.1-1.5-1.41.4
Delay disc. indifference point, 8s delay0.00.00.00.10.1-0.2
Indifference point function ln k0.00.00.00.20.1-0.1
Indifference point function log k0.00.00.00.20.1-0.1
Patch foraging total patch changes 0 sec1.32.42.71.71.5-1.5
Patch foraging total patch changes 12 sec0.50.70.80.90.8-0.9
Patch foraging total patch changes 18 sec1.11.71.91.31.3-1.4
Patch foraging total patch changes 24 sec0.00.00.0-0.1-0.20.0
Patch foraging total patch changes 6 sec0.20.30.30.60.5-0.5
Patch foraging time to switch 0 sec0.51.11.11.01.1-1.1
Patch foraging water rate 0 sec0.20.40.5-0.5-0.70.7
Patch foraging water rate 12 sec0.40.91.0-0.9-0.91.0
Patch foraging water rate 18 sec2.43.74.2-1.8-1.92.0
Patch foraging water rate 24 sec0.10.10.3-0.1-0.30.5
Patch foraging water rate 6 sec1.92.82.9-1.7-1.61.7
Seeking ratio, delayed vs. immediate footshock1.11.31.51.21.2-1.0
Distance traveled before self-admin0.81.01.1-1.0-1.01.0
Distance traveled after self-admin2.53.13.3-1.8-1.71.8
Extensor digitorum longus weight13.151.552.8-7.1-7.37.1
Bone: elastic displacement0.40.40.50.60.6-0.7
Bone: elastic work0.20.30.30.50.5-0.6
Bone: endosteal estimation0.00.10.1-0.3-0.20.4
Bone: endosteal perimeter0.00.00.1-0.2-0.10.3
Epididymis fat weight0.82.73.01.61.6-1.7
Delta time in closed arm before/after self-admin3.83.63.61.91.9-1.9
Delta time in open arm before/after self-admin0.00.00.0-0.1-0.20.1
Diff in mean of infusions in LGA sessions1.01.21.6-1.1-1.30.9
Delay discount exponential model param0.40.50.60.70.7-0.6
Extinction: sum of active levers before priming2.02.22.41.51.4-1.5
Active lever presses in extinction session 60.40.40.70.60.4-0.8
Bone: final force0.10.10.2-0.4-0.40.3
Bone: final moment0.10.10.1-0.3-0.30.3
Food consumed during 24 hour testing period0.20.30.30.50.6-0.6
Glucose0.00.00.0-0.10.0-0.1
Heart weight0.50.80.80.90.9-0.9
Delay discount hyperbolic model param0.50.60.70.80.8-0.7
Intermittent access intake day 1-15 change1.73.63.71.91.9-1.9
Intermittent access intake escalation1.83.73.91.91.9-2.0
Intermittent access intake escalation 21.51.71.81.31.3-1.3
Intermitt. access day 1 inactive lever presses0.00.00.00.10.1-0.1
Intermitt. access day 15 inactive lever presses0.00.00.10.20.2-0.2
Intermitt. access escalation Index0.00.10.1-0.3-0.20.2
Intermittent access day 1 total infusions0.00.00.0-0.0-0.00.0
Intermittent access day 15 total infusions1.72.52.61.61.6-1.6
Intermittent access terminal intake (last 3 days)1.11.41.51.21.2-1.2
Intermittent access total infusions1.21.41.51.21.2-1.2
Intermittent access day 1 locomotion0.00.00.00.10.1-0.1
Intermittent access day 15 total locomotion0.20.40.50.60.6-0.7
Intermittent access total locomotion0.10.10.20.30.3-0.4
Intermittent access standard deviation0.20.30.40.50.5-0.6
Left kidney weight0.00.10.2-0.3-0.30.5
Right kidney weight0.00.00.1-0.1-0.10.3
Cocaine induced anxiety0.00.00.0-0.1-0.10.0
Post-drug Anxiety0.80.91.00.90.9-1.0
Baseline Anxiety0.40.50.50.60.6-0.7
Tail length0.51.92.01.31.4-1.4
Length with tail0.00.20.2-0.4-0.40.4
Length without tail2.27.07.4-2.6-2.62.7
Times rat made contact with spout0.50.60.60.70.8-0.8
Lifetime Intake0.70.90.90.90.9-1.0
Liver weight, left1.93.13.2-1.8-1.81.7
Liver weight, right0.50.80.8-0.9-0.90.9
Locomotor activity1.62.52.6-1.5-1.51.6
Locomotor testing distance0.00.00.10.20.3-0.2
Locomotor testing rearing0.10.30.30.50.5-0.4
Locomotion in novel chamber0.50.60.60.80.8-0.8
Locomotion in novel chamber post-restriction0.61.01.3-0.9-0.91.2
Fecal boli incidents, locomotor time 11.01.51.6-1.3-1.31.1
Change in fecal boli incidents, locomotor task0.20.20.3-0.5-0.50.5
Time >=10cm from walls, locomotor time 10.90.91.20.90.9-1.1
Bouts of movement, locomotor time 14.95.65.7-2.4-2.42.3
Total resting periods, locomotor time 14.95.55.5-2.4-2.42.3
Rest time, locomotor task time 12.02.52.5-1.6-1.61.6
Distance moved, locomotor task time 12.33.43.71.81.8-1.9
Vertical activity count, locomotor time 10.51.21.31.11.1-1.0
Time >=10cm from walls, locomotor time 20.30.50.6-0.6-0.60.8
Bouts of movement, locomotor time 23.35.25.2-2.3-2.32.3
Total resting periods, locomotor time 23.25.65.7-2.3-2.32.4
Rest time, locomotor task time 20.91.21.6-1.0-1.01.3
Distance moved, locomotor task time 23.13.73.91.91.9-2.0
Vertical activity count, locomotor time 20.30.50.50.70.7-0.7
Light reinforcement 12.35.65.82.42.4-2.3
Light reinforcement 20.81.31.41.11.1-1.2
Bone: marrow area0.00.00.1-0.1-0.10.2
Bone: maximum diameter0.30.50.5-0.7-0.70.7
Bone: maximum force0.20.40.5-0.7-0.70.6
Bone: maximum moment0.10.20.3-0.5-0.50.4
Mean time between licks in bursts1.12.62.71.61.6-1.6
Mean num. licks in bursts0.20.30.40.60.5-0.6
Cd content in liver1.21.41.5-1.2-1.21.1
Co content in liver5.26.06.2-2.5-2.52.4
Cu content in liver0.50.60.7-0.7-0.80.6
Fe content in liver1.72.02.11.41.4-1.4
K content in liver1.11.11.21.11.0-1.1
Mg content in liver2.62.72.81.71.6-1.7
Mn content in liver2.52.82.81.71.7-1.7
Na content in liver1.01.11.1-1.0-1.11.0
Rb content in liver0.00.00.10.20.2-0.2
Se content in liver1.01.11.21.11.0-1.1
Sr content in liver0.00.00.00.10.0-0.2
Zn content in liver0.10.10.20.30.2-0.4
Bone: minimum diameter0.10.20.2-0.4-0.40.5
Time in familiar zone, hab. session 10.00.00.0-0.1-0.10.2
Time in novel zone, hab. session 11.31.31.4-1.1-1.21.1
Total zone transitions, hab. session 10.20.30.4-0.6-0.60.4
Total locomotion distance, hab. session 10.00.00.0-0.1-0.0-0.1
Locomotion velocity, hab. session 10.10.10.20.20.3-0.4
Time in familiar zone, hab. session 21.92.02.1-1.5-1.41.4
Time in novel zone, hab. session 20.70.70.70.90.8-0.8
Total zone transitions, hab. session 21.51.91.9-1.4-1.41.4
Total locomotion distance, hab. session 20.30.40.4-0.6-0.60.6
Locomotion velocity, hab. session 20.60.80.8-0.9-0.90.9
Novel to familiar place preference ratio1.51.61.71.31.3-1.2
Novelty place preference1.21.31.31.21.1-1.1
Time in novel zone, NPP test0.60.60.70.80.8-0.8
Total zone transitions, NPP test0.10.20.20.40.4-0.4
Total locomotion distance, NPP test2.43.33.41.81.8-1.8
Locomotion velocity, NPP test2.33.33.41.81.8-1.8
Intraocular pressure0.40.60.80.70.7-0.9
Delta distance traveled before/after self-admin3.03.23.3-1.8-1.71.8
Delta ambulatory time before/after self-admin2.73.33.6-1.8-1.71.9
Parametrial fat weight2.04.85.22.32.3-2.0
Pavlov. Cond. lever latency0.00.00.00.0-0.00.1
Pavlov. Cond. magazine entry latency0.00.00.10.10.2-0.3
Pavlov. Cond. change in total contacts1.01.11.3-1.1-1.00.9
Pavlov. Cond. index score0.00.10.1-0.3-0.20.1
Pavlov. Cond. latency score0.00.00.0-0.2-0.10.0
Pavlov. Cond. lever contacts0.00.00.10.10.1-0.3
Pavlov. Cond. magazine entry number0.30.40.50.70.6-0.6
Pavlov. Cond. intertrial magazine entries0.10.10.10.30.3-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.5-0.40.3
Pavlov. Cond. response bias0.10.10.2-0.4-0.40.3
Pavlov. Cond. lever latency0.40.50.60.80.7-0.7
Pavlov. Cond. magazine entry latency0.10.10.10.20.3-0.3
Pavlov. Cond. change in total contacts1.21.92.1-1.4-1.31.4
Pavlov. Cond. index score0.40.50.6-0.8-0.70.7
Pavlov. Cond. latency score0.30.30.4-0.6-0.50.6
Pavlov. Cond. lever contacts0.20.20.3-0.6-0.40.5
Pavlov. Cond. magazine entry number0.00.00.0-0.1-0.20.2
Pavlov. Cond. intertrial magazine entries5.37.98.12.82.9-2.8
Pavlov. Cond. lever-magazine prob. diff.0.50.70.8-0.9-0.80.8
Pavlov. Cond. response bias0.20.30.4-0.6-0.50.5
Time in closed arm before self-admin1.21.61.8-1.3-1.11.3
Time in closed arm after self-admin0.00.00.0-0.2-0.00.2
Time in open arm before self-admin0.00.00.0-0.2-0.20.0
Time in open arm after self-admin0.00.00.10.1-0.1-0.2
Bone: periosteal estimation0.00.00.0-0.2-0.10.2
Bone: periosteal perimeter0.00.00.1-0.1-0.10.3
Bone: post-yield work0.20.20.30.50.5-0.5
Progressive ratio test 1 active lever presses0.10.10.1-0.3-0.30.3
Progressive ratio test 1 breakpoint0.10.20.2-0.4-0.40.4
Progressive ratio test 1 inactive lever presses0.81.21.21.11.1-1.1
Progressive ratio test 2 active lever presses0.00.00.00.20.2-0.2
Progressive ratio test 2 breakpoint0.00.00.00.20.1-0.2
Progressive ratio test 2 inactive lever presses0.30.50.50.70.6-0.7
Incentive Sensitization - Responses0.20.30.40.60.6-0.6
Incentive Sensitization - Breakpoint0.40.50.50.70.7-0.7
Sum of active levers in priming session hrs 5-60.00.00.10.20.1-0.2
Progressive ratio0.00.00.0-0.1-0.10.1
Food seeking constrained by brief footshock2.12.62.7-1.6-1.61.6
Seeking ratio, punishment vs. effort0.71.01.0-1.0-1.01.0
Retroperitoneal fat weight0.10.50.60.80.7-0.6
Reaction time number correct0.50.91.1-1.0-0.91.1
Reaction time mean minus median0.10.20.2-0.5-0.40.5
Reaction time mean minus median AUC0.00.10.1-0.3-0.30.4
Reaction time num false alarms0.10.10.1-0.3-0.30.3
Reaction time num false alarms AUC0.00.00.1-0.2-0.20.3
Reaction time trials correct on left0.50.91.1-1.0-0.91.1
Reaction time trials on left0.40.70.9-0.9-0.70.9
Reaction time mean0.20.30.3-0.6-0.50.5
Reaction time mean AUC0.30.50.6-0.8-0.70.7
Median of all reaction times0.20.20.3-0.5-0.50.4
Reaction time omissions1.72.42.51.61.6-1.6
Reaction time false alarm rate0.10.10.10.40.3-0.3
Reaction time premature initiation rate1.82.52.9-1.5-1.71.6
Reaction time premature initiations2.13.73.8-1.8-2.01.9
Std. dev. reaction times0.10.20.2-0.5-0.40.5
Reaction time trials completed0.40.70.9-0.9-0.70.9
Reaction time trials AUC0.30.60.8-0.8-0.70.9
Run reversals in cocaine runway, females3.13.13.31.71.8-1.8
Run reversals in cocaine runway, males2.02.02.0-1.4-1.41.4
Latency to leave start box in cocaine runway0.40.50.6-0.6-0.60.8
Latency to leave start box in cocaine runway, F1.31.51.8-1.2-1.21.4
Latency to leave start box in cocaine runway, M0.10.10.10.30.3-0.3
Std. dev. time between licks in bursts1.31.71.71.31.3-1.3
Total sessions with >9 infusions0.00.00.0-0.2-0.20.2
Short access day 1 total inactive lever presses0.10.20.20.40.4-0.4
Short access day 10 total inactive lever presses0.10.20.30.50.5-0.4
Short access day 1 total infusions0.00.10.1-0.2-0.20.2
Short access day 10 total infusions0.30.30.4-0.6-0.60.6
Short access total infusions0.00.00.0-0.2-0.20.2
Short access day 1 locomotion0.81.01.0-1.0-1.01.0
Short access day 10 total locomotion0.00.00.00.10.10.1
Short access total locomotion0.10.10.1-0.3-0.30.3
One hour access (0.3 mA shock)0.70.80.80.90.9-0.9
Compulsive drug intake0.60.70.80.90.9-0.8
One hour access (shock baseline)0.00.00.0-0.0-0.0-0.1
Social response proportion0.10.10.1-0.2-0.30.3
Social responses1.11.41.51.21.2-1.1
Social time0.50.70.70.90.8-0.8
Soleus weight1.33.83.9-1.9-2.01.9
Bone: stiffness0.61.01.1-1.0-1.00.9
Tibialis anterior weight8.528.829.6-5.3-5.45.3
Time to tail flick, vehicle, before self-admin0.80.80.90.90.8-1.0
Time to tail flick, vehicle, after self-admin1.41.92.2-1.4-1.51.2
Time to tail flick, test, before self-admin2.82.83.01.71.7-1.7
Time to tail flick, test, after self-admin2.32.32.61.51.6-1.5
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.4-0.50.5
Delta time to tail flick, test, before/after SA0.00.00.00.10.2-0.1
Tibia length1.43.84.11.92.0-1.9
Ambulatory time before self-admin0.30.40.5-0.7-0.70.6
Ambulatory time after self-admin5.26.16.4-2.5-2.42.5
Bone: tissue strength0.10.10.10.30.3-0.2
Total heroin consumption0.40.50.6-0.6-0.80.8
Bone: trabecular number2.44.04.22.02.1-1.9
Bone: trabecular spacing2.33.13.1-1.7-1.81.8
Bone: trabecular thickness1.11.41.51.21.2-1.2
Bone: trabecular tissue density1.42.02.2-1.5-1.41.4
Water consumed over 24 hours1.31.71.9-1.4-1.31.3
Number of responses in last shaping day0.60.60.7-0.8-0.80.7