Bag5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Bag5 0.02 0.02 5.3e-03 0.01 0.01 0.01 0.01 1.7e-02 2.3e-02 5.0e-02 3.3e-02
2 Brain gene expression Bag5 0.13 0.12 1.4e-09 0.09 0.1 0.09 0.09 2.0e-08 1.1e-09 2.2e-08 1.5e-08
3 LHb alternative TSS XM_006240601.3 0.13 0.12 3.3e-03 0.05 0.1 0 0.04 3.0e-02 3.0e-03 3.1e-01 3.2e-02
4 Adipose gene expression Bag5 0.1 0.09 4.7e-08 0.05 0.05 0.05 0.05 2.4e-06 1.9e-06 1.6e-06 4.6e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.40.2-0.20.4
Area under the delay curve0.10.10.2-0.30.2-0.3-0.5
BMI with tail2.27.38.3-2.52.8-2.9-2.6
BMI without tail1.32.88.3-0.31.2-1.1-2.9
Body weight0.31.11.91.4-0.70.6-1.4
Weight adjusted by age0.10.10.40.1-0.10.10.6
Bone surface0.10.10.2-0.40.3-0.20.5
Bone volume0.00.00.1-0.20.3-0.2-0.1
Breakpoint value in progressive ratio session0.00.00.0-0.20.1-0.1-0.1
Number of licking bursts0.10.10.1-0.1-0.20.30.4
Context. condit. distance diff. score1.72.03.41.8-1.51.50.4
Locomotion velocity, session 10.20.20.30.3-0.40.50.5
Locomotion distance, session 10.40.50.8-0.90.7-0.70.3
Locomotion velocity, session 20.20.20.60.3-0.1-0.0-0.8
Locomotion distance, session 20.30.40.5-0.60.7-0.6-0.6
Locomotion velocity, session 30.10.10.2-0.40.4-0.40.0
Locomotion distance, session 30.10.10.4-0.0-0.10.10.6
Stereotopy head waving bouts, day 30.10.10.20.4-0.40.40.2
Stereotopy head waving duration, day 30.20.30.50.7-0.50.5-0.1
Locomotion velocity, session 70.30.30.5-0.70.4-0.50.4
Locomotion distance, session 70.60.81.0-1.01.0-1.0-0.4
Stereotopy head waving bouts, day 71.01.11.21.0-1.11.11.0
Stereotopy head waving duration, day 70.40.50.60.6-0.70.60.8
Locomotion velocity, session 80.20.30.50.7-0.50.4-0.5
Locomotion distance, session 80.10.10.40.20.2-0.1-0.7
Degree of sensitization distance0.10.10.2-0.50.3-0.30.0
Degree of sensitization stereotypy0.50.51.50.2-0.50.51.2
Conditioned locomotion1.11.21.61.2-1.31.20.6
Cocaine response after cond. corrected0.60.71.2-0.70.8-0.7-1.1
Cocaine response after cond. not corrected1.92.12.2-1.41.4-1.4-1.5
Cocaine response before conditioning2.02.43.0-1.71.7-1.7-0.8
Saline control response0.20.20.3-0.40.5-0.5-0.4
Bone: connectivity density0.10.20.50.1-0.30.20.7
Bone: cortical apparent density7.19.412.13.2-3.53.41.8
Bone: cortical area0.71.11.71.2-1.11.30.2
Bone: cortical porosity0.00.00.20.1-0.00.00.4
Bone: cortical porosity0.10.20.2-0.40.5-0.50.1
Bone: cortical thickness0.71.21.71.0-1.21.30.8
Bone: cortical thickness0.60.71.00.9-0.91.00.1
Bone: cortical tissue density7.29.512.23.3-3.53.41.8
Condit. Reinf. active minus inactive responses0.50.60.7-0.60.8-0.8-0.9
Condit. Reinf. active-inactive response ratio2.02.22.9-1.61.7-1.7-0.6
Condit. Reinf. active responses0.40.41.4-0.10.4-0.4-1.2
Condit. Reinf. inactive responses1.51.82.71.6-1.51.50.3
Incentive salience index mean0.40.40.6-0.70.8-0.7-0.3
Condit. Reinf. lever presses0.10.10.2-0.40.4-0.40.4
Condit. Reinf. active minus inactive responses0.40.51.01.0-0.70.6-0.3
Condit. Reinf. active-inactive response ratio0.50.61.21.1-0.70.7-0.5
Condit. Reinf. active responses0.20.31.10.40.0-0.1-1.1
Condit. Reinf. inactive responses0.70.91.6-0.70.8-0.9-1.3
Condit. Reinf. lever presses1.82.44.0-1.01.5-1.5-2.0
Condit. Reinf. lever reinforcers received0.30.41.60.40.0-0.1-1.3
Conditioned reinforcement - actives1.81.83.01.7-1.51.5-0.1
Conditioned reinforcement - inactives0.30.40.60.8-0.60.6-0.2
Conditioned locomotion0.80.91.7-0.60.9-0.9-1.3
Patch foraging indifference point 0 sec2.94.76.22.5-2.52.31.0
Patch foraging indifference point AUC2.22.53.11.7-1.81.81.0
Delay disc. indifference point, 0s delay0.10.10.10.4-0.30.3-0.1
Delay disc. indifference point, 16s delay0.40.41.50.20.1-0.2-1.2
Delay disc. indifference point, 2s delay0.20.20.4-0.60.3-0.20.5
Delay disc. indifference point, 24s delay0.40.30.8-0.70.3-0.20.9
Delay disc. indifference point, 4s delay0.10.10.20.3-0.40.3-0.2
Delay disc. indifference point, 8s delay0.20.20.4-0.30.4-0.5-0.7
Indifference point function ln k0.40.60.70.8-0.80.80.4
Indifference point function log k0.40.60.70.8-0.80.80.4
Patch foraging total patch changes 0 sec3.25.26.92.6-2.62.50.9
Patch foraging total patch changes 12 sec3.34.35.42.1-2.32.21.5
Patch foraging total patch changes 18 sec1.51.92.41.3-1.61.41.3
Patch foraging total patch changes 24 sec0.20.20.40.6-0.60.40.0
Patch foraging total patch changes 6 sec2.03.04.72.2-1.91.7-0.9
Patch foraging time to switch 0 sec9.314.419.0-4.44.2-4.2-1.8
Patch foraging water rate 0 sec15.725.133.15.8-5.75.62.0
Patch foraging water rate 12 sec7.912.118.84.3-3.83.80.5
Patch foraging water rate 18 sec4.35.77.02.5-2.62.61.6
Patch foraging water rate 24 sec3.34.66.42.5-2.42.40.8
Patch foraging water rate 6 sec4.05.99.03.0-2.72.70.4
Seeking ratio, delayed vs. immediate footshock0.70.82.60.4-0.50.51.6
Distance traveled before self-admin0.10.10.3-0.10.1-0.1-0.5
Distance traveled after self-admin0.40.50.91.0-0.70.7-0.1
Extensor digitorum longus weight4.919.226.15.1-4.84.82.1
Bone: elastic displacement0.50.60.70.6-0.80.90.8
Bone: elastic work0.10.10.20.2-0.30.40.1
Bone: endosteal estimation0.20.51.0-0.40.7-0.7-1.0
Bone: endosteal perimeter0.30.52.00.30.2-0.1-1.4
Epididymis fat weight4.09.210.7-3.13.2-3.3-2.5
Delta time in closed arm before/after self-admin0.10.10.40.00.2-0.2-0.7
Delta time in open arm before/after self-admin0.30.30.40.5-0.70.70.3
Diff in mean of infusions in LGA sessions0.00.00.00.0-0.10.20.0
Delay discount exponential model param0.10.10.20.2-0.20.20.4
Extinction: sum of active levers before priming0.10.10.4-0.10.1-0.0-0.6
Active lever presses in extinction session 61.11.01.71.3-1.11.10.1
Bone: final force0.20.30.50.7-0.60.7-0.0
Bone: final moment0.20.40.60.7-0.60.80.1
Food consumed during 24 hour testing period0.10.10.30.6-0.30.4-0.2
Glucose0.71.11.41.0-1.21.20.8
Heart weight0.10.10.50.10.0-0.1-0.7
Delay discount hyperbolic model param0.10.10.10.4-0.20.30.2
Intermittent access intake day 1-15 change1.21.11.3-1.01.1-1.1-0.9
Intermittent access intake escalation1.41.41.5-1.11.2-1.2-1.1
Intermittent access intake escalation 20.10.10.1-0.30.4-0.3-0.1
Intermitt. access day 1 inactive lever presses2.12.33.01.7-1.71.70.6
Intermitt. access day 15 inactive lever presses0.80.91.41.2-1.01.0-0.1
Intermitt. access escalation Index0.20.20.30.5-0.60.5-0.0
Intermittent access day 1 total infusions0.60.71.9-0.30.7-0.7-1.4
Intermittent access day 15 total infusions1.92.13.2-1.11.4-1.4-1.8
Intermittent access terminal intake (last 3 days)2.22.43.5-1.21.5-1.5-1.9
Intermittent access total infusions1.21.33.5-0.50.9-0.9-1.9
Intermittent access day 1 locomotion1.21.22.5-0.61.0-1.0-1.6
Intermittent access day 15 total locomotion0.70.82.4-0.10.6-0.6-1.6
Intermittent access total locomotion0.70.82.2-0.30.7-0.7-1.5
Intermittent access standard deviation3.33.53.8-1.62.0-2.0-1.9
Left kidney weight0.61.72.91.7-1.41.3-0.5
Right kidney weight0.30.91.61.3-1.00.9-0.6
Cocaine induced anxiety2.32.73.51.8-1.81.90.9
Post-drug Anxiety2.02.22.81.7-1.71.70.5
Baseline Anxiety1.31.31.7-1.31.3-1.3-0.6
Tail length2.88.414.63.8-3.13.1-0.0
Length with tail3.613.220.74.5-4.03.90.7
Length without tail1.73.84.72.0-2.22.01.5
Times rat made contact with spout0.30.30.40.6-0.60.60.4
Lifetime Intake1.01.24.0-0.10.6-0.6-2.0
Liver weight, left2.53.95.32.3-2.22.30.7
Liver weight, right0.00.00.00.2-0.10.10.1
Locomotor activity0.10.10.20.3-0.40.40.2
Locomotor testing distance0.30.40.70.6-0.80.70.2
Locomotor testing rearing1.01.62.1-1.51.3-1.4-0.8
Locomotion in novel chamber4.35.37.72.8-2.62.60.5
Locomotion in novel chamber post-restriction0.20.20.50.00.4-0.3-0.7
Fecal boli incidents, locomotor time 12.12.34.1-2.01.6-1.40.8
Change in fecal boli incidents, locomotor task3.53.39.21.8-0.50.4-3.0
Time >=10cm from walls, locomotor time 10.90.92.6-0.30.7-0.7-1.6
Bouts of movement, locomotor time 12.32.54.3-2.11.2-1.11.7
Total resting periods, locomotor time 11.92.13.9-2.01.2-1.11.3
Rest time, locomotor task time 10.60.62.1-0.0-0.40.51.4
Distance moved, locomotor task time 10.50.51.6-0.10.4-0.5-1.3
Vertical activity count, locomotor time 10.60.60.80.7-0.90.80.6
Time >=10cm from walls, locomotor time 20.60.71.20.3-0.80.81.1
Bouts of movement, locomotor time 21.61.72.21.2-1.41.51.2
Total resting periods, locomotor time 21.11.21.61.1-1.21.30.7
Rest time, locomotor task time 20.30.30.60.8-0.60.6-0.3
Distance moved, locomotor task time 20.20.30.6-0.80.4-0.50.4
Vertical activity count, locomotor time 21.41.65.10.0-0.80.82.3
Light reinforcement 10.00.10.20.00.0-0.1-0.5
Light reinforcement 21.62.12.4-1.41.6-1.4-1.4
Bone: marrow area0.20.40.7-0.30.7-0.6-0.8
Bone: maximum diameter0.00.10.10.2-0.20.3-0.3
Bone: maximum force0.20.40.60.7-0.60.70.0
Bone: maximum moment0.20.30.50.6-0.60.70.1
Mean time between licks in bursts1.31.94.3-0.71.2-1.2-2.1
Mean num. licks in bursts0.10.10.20.4-0.10.1-0.2
Cd content in liver0.40.51.01.0-0.60.6-0.3
Co content in liver0.70.91.51.2-1.01.0-0.2
Cu content in liver1.21.41.9-1.11.1-1.1-1.4
Fe content in liver0.20.20.5-0.70.4-0.30.4
K content in liver0.10.10.10.4-0.40.30.2
Mg content in liver0.40.40.80.7-0.30.3-0.9
Mn content in liver0.20.20.50.6-0.20.1-0.7
Na content in liver0.10.10.3-0.50.1-0.10.5
Rb content in liver0.60.81.21.1-1.00.90.3
Se content in liver0.10.10.2-0.30.4-0.30.0
Sr content in liver0.20.20.40.6-0.40.5-0.2
Zn content in liver0.20.20.40.6-0.40.5-0.3
Bone: minimum diameter0.61.22.11.5-1.11.1-0.4
Time in familiar zone, hab. session 10.30.30.5-0.60.6-0.7-0.2
Time in novel zone, hab. session 10.10.10.2-0.40.4-0.20.0
Total zone transitions, hab. session 10.50.70.9-0.80.9-0.9-0.7
Total locomotion distance, hab. session 10.10.20.40.5-0.20.2-0.7
Locomotion velocity, hab. session 10.50.71.21.1-0.80.8-0.4
Time in familiar zone, hab. session 20.50.50.6-0.70.6-0.8-0.7
Time in novel zone, hab. session 20.10.10.1-0.00.2-0.1-0.4
Total zone transitions, hab. session 20.60.81.1-1.01.0-0.9-0.4
Total locomotion distance, hab. session 20.30.40.50.7-0.70.70.3
Locomotion velocity, hab. session 20.40.60.80.9-0.80.90.3
Novel to familiar place preference ratio0.50.50.8-0.90.6-0.60.8
Novelty place preference0.30.30.5-0.70.5-0.50.6
Time in novel zone, NPP test0.30.30.5-0.60.4-0.40.7
Total zone transitions, NPP test0.10.10.2-0.30.5-0.40.0
Total locomotion distance, NPP test0.00.10.10.2-0.10.20.3
Locomotion velocity, NPP test0.00.10.10.4-0.20.30.1
Intraocular pressure0.10.20.4-0.50.3-0.30.6
Delta distance traveled before/after self-admin0.00.00.10.3-0.10.10.2
Delta ambulatory time before/after self-admin0.50.50.80.9-0.70.70.5
Parametrial fat weight0.00.00.1-0.00.1-0.00.3
Pavlov. Cond. lever latency0.50.70.90.9-0.90.9-0.2
Pavlov. Cond. magazine entry latency0.81.01.5-1.20.8-0.81.2
Pavlov. Cond. change in total contacts0.20.20.3-0.60.5-0.50.2
Pavlov. Cond. index score0.91.21.9-1.41.1-1.10.7
Pavlov. Cond. latency score0.70.81.3-1.10.9-0.90.7
Pavlov. Cond. lever contacts0.80.91.4-1.21.0-1.00.3
Pavlov. Cond. magazine entry number0.91.11.51.2-1.21.2-0.1
Pavlov. Cond. intertrial magazine entries4.55.58.42.9-2.62.60.3
Pavlov. Cond. lever-magazine prob. diff.0.81.01.5-1.21.0-0.90.8
Pavlov. Cond. response bias1.01.21.6-1.31.2-1.20.1
Pavlov. Cond. lever latency2.33.14.61.3-1.81.82.1
Pavlov. Cond. magazine entry latency4.75.46.0-2.12.4-2.5-2.3
Pavlov. Cond. change in total contacts3.75.15.9-2.12.4-2.4-2.1
Pavlov. Cond. index score5.06.47.7-2.12.6-2.6-2.8
Pavlov. Cond. latency score4.85.96.5-2.12.5-2.6-2.5
Pavlov. Cond. lever contacts3.44.67.0-1.62.1-2.1-2.6
Pavlov. Cond. magazine entry number4.15.06.71.8-2.22.32.6
Pavlov. Cond. intertrial magazine entries4.76.17.62.7-2.82.71.6
Pavlov. Cond. lever-magazine prob. diff.5.67.29.0-2.22.7-2.8-3.0
Pavlov. Cond. response bias4.45.99.0-1.82.4-2.4-3.0
Time in closed arm before self-admin2.62.94.2-2.11.9-1.9-0.4
Time in closed arm after self-admin1.31.31.8-1.31.3-1.3-0.3
Time in open arm before self-admin4.75.18.83.0-2.42.40.1
Time in open arm after self-admin2.73.04.72.2-1.91.9-0.1
Bone: periosteal estimation0.10.20.30.6-0.30.4-0.5
Bone: periosteal perimeter0.30.51.40.5-0.10.3-1.2
Bone: post-yield work1.01.41.61.2-1.31.31.0
Progressive ratio test 1 active lever presses0.10.10.50.10.1-0.1-0.7
Progressive ratio test 1 breakpoint0.20.20.7-0.00.3-0.3-0.8
Progressive ratio test 1 inactive lever presses2.22.43.11.7-1.81.80.8
Progressive ratio test 2 active lever presses0.30.41.40.20.1-0.1-1.2
Progressive ratio test 2 breakpoint0.40.51.70.30.0-0.1-1.3
Progressive ratio test 2 inactive lever presses0.80.91.41.2-1.01.0-0.2
Incentive Sensitization - Responses0.20.20.60.00.1-0.1-0.8
Incentive Sensitization - Breakpoint0.10.10.50.2-0.00.0-0.7
Sum of active levers in priming session hrs 5-60.40.41.3-0.30.4-0.4-1.1
Progressive ratio0.70.81.61.2-0.70.7-0.9
Food seeking constrained by brief footshock1.62.02.90.9-1.41.51.7
Seeking ratio, punishment vs. effort0.60.72.4-0.4-0.30.31.5
Retroperitoneal fat weight0.20.60.8-0.90.9-0.8-0.5
Reaction time number correct2.53.64.92.0-2.22.11.0
Reaction time mean minus median0.40.51.1-0.80.5-0.41.0
Reaction time mean minus median AUC0.30.30.5-0.70.5-0.40.7
Reaction time num false alarms0.81.11.71.3-1.21.1-0.4
Reaction time num false alarms AUC1.21.62.41.5-1.51.4-0.1
Reaction time trials correct on left2.53.64.92.0-2.22.11.0
Reaction time trials on left2.53.64.82.0-2.22.11.1
Reaction time mean0.81.21.8-1.31.2-1.20.1
Reaction time mean AUC0.60.81.2-1.11.0-1.00.1
Median of all reaction times0.50.60.9-0.90.9-0.9-0.3
Reaction time omissions1.42.05.30.7-1.01.12.3
Reaction time false alarm rate0.20.20.50.5-0.40.3-0.7
Reaction time premature initiation rate0.70.91.61.3-1.01.00.1
Reaction time premature initiations2.13.04.32.1-1.91.90.6
Std. dev. reaction times0.50.81.1-1.10.9-0.80.8
Reaction time trials completed2.53.64.82.0-2.22.11.1
Reaction time trials AUC2.73.85.22.1-2.32.21.0
Run reversals in cocaine runway, females1.41.42.6-1.61.0-1.10.8
Run reversals in cocaine runway, males0.80.80.90.7-1.01.00.9
Latency to leave start box in cocaine runway0.20.20.6-0.20.2-0.3-0.8
Latency to leave start box in cocaine runway, F0.10.10.3-0.50.2-0.3-0.3
Latency to leave start box in cocaine runway, M0.10.10.2-0.00.3-0.3-0.5
Std. dev. time between licks in bursts0.91.02.1-0.51.0-0.9-1.5
Total sessions with >9 infusions0.50.62.10.30.2-0.2-1.4
Short access day 1 total inactive lever presses0.20.20.90.20.2-0.2-0.9
Short access day 10 total inactive lever presses0.30.30.40.6-0.70.70.4
Short access day 1 total infusions0.60.61.01.0-0.50.5-1.0
Short access day 10 total infusions1.11.24.0-0.10.6-0.7-2.0
Short access total infusions1.01.14.00.10.5-0.5-2.0
Short access day 1 locomotion1.11.23.5-0.30.8-0.9-1.9
Short access day 10 total locomotion0.80.91.9-0.60.8-0.8-1.4
Short access total locomotion0.50.51.90.10.2-0.3-1.4
One hour access (0.3 mA shock)0.50.61.80.7-0.30.3-1.3
Compulsive drug intake0.20.20.5-0.40.1-0.10.7
One hour access (shock baseline)0.50.62.40.20.1-0.1-1.6
Social response proportion0.50.60.80.9-0.60.5-0.9
Social responses0.10.10.4-0.00.2-0.2-0.6
Social time0.71.01.81.3-1.01.00.3
Soleus weight0.00.10.30.10.1-0.2-0.5
Bone: stiffness1.32.02.81.7-1.51.60.5
Tibialis anterior weight0.30.91.41.2-1.01.00.1
Time to tail flick, vehicle, before self-admin0.70.71.10.7-0.70.81.0
Time to tail flick, vehicle, after self-admin0.20.20.2-0.40.4-0.40.4
Time to tail flick, test, before self-admin0.10.10.10.4-0.30.3-0.2
Time to tail flick, test, after self-admin1.92.02.91.2-1.31.31.7
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.30.2-0.3-0.0
Delta time to tail flick, test, before/after SA1.21.11.80.9-0.90.91.4
Tibia length0.30.91.20.7-1.01.11.0
Ambulatory time before self-admin0.10.10.1-0.40.2-0.2-0.3
Ambulatory time after self-admin0.00.00.20.10.1-0.1-0.4
Bone: tissue strength0.30.31.0-0.1-0.20.31.0
Total heroin consumption0.81.01.41.1-1.11.20.4
Bone: trabecular number0.10.10.20.2-0.30.20.4
Bone: trabecular spacing0.10.20.4-0.10.3-0.2-0.7
Bone: trabecular thickness0.10.10.10.2-0.30.40.3
Bone: trabecular tissue density0.20.30.40.3-0.70.60.5
Water consumed over 24 hours2.73.24.72.2-2.02.00.7
Number of responses in last shaping day0.40.40.6-0.50.8-0.7-0.6