Atxn1l

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Atxn1l 0.07 0.03 6.4e-04 0.01 0.03 0.03 0.02 2.2e-02 8.4e-04 4.6e-04 2.4e-03
2 Brain mRNA stability Atxn1l 0.07 0.04 1.1e-04 0.05 0.03 0.04 0.05 1.5e-05 6.7e-04 1.9e-04 3.7e-05
3 Adipose gene expression Atxn1l 0.03 0.02 5.2e-03 -0 0.01 -0 -0 9.1e-01 2.4e-02 5.7e-01 5.2e-01
4 IC mRNA stability Atxn1l 0.82 0 7.6e-06 0.09 0.12 0.21 0.18 1.0e-04 1.4e-05 3.0e-09 6.3e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.20.2-0.5-0.10.4
Area under the delay curve0.10.10.4-0.30.00.1-0.6
BMI with tail0.93.14.62.21.0-1.72.0
BMI without tail0.42.23.31.81.0-1.41.7
Body weight1.77.411.43.42.5-1.33.2
Weight adjusted by age0.10.41.00.10.3-1.00.7
Bone surface1.01.93.71.91.2-0.31.5
Bone volume0.81.62.81.71.0-0.11.6
Breakpoint value in progressive ratio session0.10.20.60.5-0.1-0.20.8
Number of licking bursts0.20.72.20.8-0.11.50.4
Context. condit. distance diff. score0.40.40.60.80.80.70.2
Locomotion velocity, session 10.10.10.10.4-0.4-0.40.2
Locomotion distance, session 10.20.30.9-0.2-0.9-0.50.0
Locomotion velocity, session 20.40.51.80.2-0.51.3-0.0
Locomotion distance, session 20.20.31.00.10.1-1.00.2
Locomotion velocity, session 31.71.93.1-1.5-1.8-0.6-1.3
Locomotion distance, session 30.20.30.8-0.4-0.3-0.9-0.3
Stereotopy head waving bouts, day 33.44.04.5-1.9-2.02.0-2.1
Stereotopy head waving duration, day 32.22.73.6-1.3-1.41.9-1.8
Locomotion velocity, session 71.51.72.6-1.3-0.8-1.4-1.6
Locomotion distance, session 70.91.23.90.40.8-2.0-0.0
Stereotopy head waving bouts, day 72.73.17.5-1.3-2.71.7-0.7
Stereotopy head waving duration, day 73.54.38.7-1.8-3.02.1-1.1
Locomotion velocity, session 80.30.41.10.41.00.40.1
Locomotion distance, session 80.20.30.60.80.7-0.20.4
Degree of sensitization distance0.60.70.90.90.8-0.80.6
Degree of sensitization stereotypy2.32.67.2-1.3-2.71.0-0.5
Conditioned locomotion0.30.40.80.9-0.20.10.8
Cocaine response after cond. corrected0.30.51.0-1.0-0.4-0.8-0.3
Cocaine response after cond. not corrected0.20.30.6-0.7-0.2-0.8-0.3
Cocaine response before conditioning0.10.10.10.30.30.2-0.2
Saline control response1.31.84.81.20.92.20.3
Bone: connectivity density0.20.30.60.80.1-0.40.7
Bone: cortical apparent density0.20.30.70.6-0.2-0.00.9
Bone: cortical area1.32.13.51.91.4-0.61.7
Bone: cortical porosity0.50.61.2-0.80.60.4-1.1
Bone: cortical porosity0.40.40.9-0.70.50.0-1.0
Bone: cortical thickness0.20.30.80.70.2-0.00.9
Bone: cortical thickness0.00.00.00.10.2-0.10.1
Bone: cortical tissue density0.20.30.80.7-0.2-0.10.9
Condit. Reinf. active minus inactive responses0.50.61.9-0.50.1-1.4-0.5
Condit. Reinf. active-inactive response ratio0.20.20.4-0.50.2-0.6-0.6
Condit. Reinf. active responses0.70.92.6-0.20.8-1.6-0.4
Condit. Reinf. inactive responses0.71.02.00.41.4-1.30.4
Incentive salience index mean0.40.51.30.20.7-1.1-0.2
Condit. Reinf. lever presses0.40.61.60.71.3-0.50.1
Condit. Reinf. active minus inactive responses0.30.41.1-0.40.7-0.2-1.0
Condit. Reinf. active-inactive response ratio0.30.50.9-0.9-0.4-0.2-0.9
Condit. Reinf. active responses0.50.71.40.01.20.6-1.0
Condit. Reinf. inactive responses0.71.02.01.11.40.70.0
Condit. Reinf. lever presses0.71.12.50.51.61.2-0.4
Condit. Reinf. lever reinforcers received0.50.81.70.11.30.7-0.9
Conditioned reinforcement - actives0.52.06.70.3-0.9-2.60.8
Conditioned reinforcement - inactives0.82.33.91.4-0.2-2.01.8
Conditioned locomotion0.81.24.40.5-0.3-2.10.5
Patch foraging indifference point 0 sec0.30.82.60.50.11.60.5
Patch foraging indifference point AUC0.71.64.3-0.5-0.62.1-1.3
Delay disc. indifference point, 0s delay2.22.54.5-1.6-0.81.5-2.1
Delay disc. indifference point, 16s delay0.10.10.1-0.1-0.40.2-0.3
Delay disc. indifference point, 2s delay0.20.20.40.20.60.3-0.6
Delay disc. indifference point, 24s delay0.71.11.81.31.1-0.21.1
Delay disc. indifference point, 4s delay1.61.72.9-1.6-1.00.5-1.7
Delay disc. indifference point, 8s delay0.00.00.10.1-0.1-0.30.2
Indifference point function ln k0.61.82.61.21.6-1.01.5
Indifference point function log k0.61.82.61.21.6-1.01.5
Patch foraging total patch changes 0 sec0.30.82.50.70.31.60.6
Patch foraging total patch changes 12 sec0.60.82.90.20.11.7-0.2
Patch foraging total patch changes 18 sec0.30.81.0-0.9-1.00.6-1.0
Patch foraging total patch changes 24 sec0.41.52.71.50.41.11.6
Patch foraging total patch changes 6 sec1.01.83.11.80.60.81.7
Patch foraging time to switch 0 sec0.31.03.3-0.1-0.6-1.80.5
Patch foraging water rate 0 sec0.10.30.80.70.10.90.1
Patch foraging water rate 12 sec0.31.42.41.50.41.31.2
Patch foraging water rate 18 sec1.22.85.62.41.30.41.9
Patch foraging water rate 24 sec0.30.51.2-0.4-0.41.1-0.6
Patch foraging water rate 6 sec1.21.83.61.90.11.21.5
Seeking ratio, delayed vs. immediate footshock0.81.22.4-0.8-1.2-1.6-0.4
Distance traveled before self-admin1.12.44.32.10.61.11.9
Distance traveled after self-admin0.50.81.41.00.01.20.9
Extensor digitorum longus weight0.52.14.31.22.11.70.3
Bone: elastic displacement0.60.81.6-1.2-0.90.3-0.8
Bone: elastic work0.00.00.1-0.2-0.0-0.30.1
Bone: endosteal estimation1.84.36.62.62.4-1.41.8
Bone: endosteal perimeter1.53.85.42.32.1-1.41.8
Epididymis fat weight0.84.35.42.32.1-1.42.3
Delta time in closed arm before/after self-admin0.40.41.4-0.3-1.2-0.10.4
Delta time in open arm before/after self-admin0.30.30.80.40.90.6-0.2
Diff in mean of infusions in LGA sessions0.10.20.50.40.2-0.40.7
Delay discount exponential model param0.00.00.10.0-0.30.10.3
Extinction: sum of active levers before priming0.20.30.5-0.7-0.20.5-0.6
Active lever presses in extinction session 60.40.40.6-0.8-0.7-0.0-0.7
Bone: final force1.01.63.11.51.8-0.31.0
Bone: final moment0.81.42.71.31.6-0.60.9
Food consumed during 24 hour testing period0.20.50.70.80.70.30.7
Glucose0.50.82.2-0.31.5-0.8-0.6
Heart weight1.82.95.21.91.7-0.32.3
Delay discount hyperbolic model param0.10.10.30.3-0.10.00.5
Intermittent access intake day 1-15 change0.00.30.6-0.5-0.8-0.5-0.1
Intermittent access intake escalation0.10.30.7-0.2-0.6-0.80.3
Intermittent access intake escalation 20.20.30.60.1-0.4-0.70.8
Intermitt. access day 1 inactive lever presses0.11.65.2-0.8-0.7-2.3-0.4
Intermitt. access day 15 inactive lever presses0.52.97.71.2-0.1-2.81.5
Intermitt. access escalation Index0.30.91.7-0.9-0.50.8-1.3
Intermittent access day 1 total infusions1.44.26.0-2.4-2.3-1.5-1.8
Intermittent access day 15 total infusions0.92.36.2-1.0-1.4-2.50.0
Intermittent access terminal intake (last 3 days)1.62.75.9-1.4-1.7-2.4-0.4
Intermittent access total infusions2.32.76.7-1.4-1.4-2.6-0.5
Intermittent access day 1 locomotion0.61.21.6-1.2-1.2-0.7-1.1
Intermittent access day 15 total locomotion0.31.02.3-0.4-1.5-1.20.2
Intermittent access total locomotion1.31.63.0-1.1-1.7-1.3-0.6
Intermittent access standard deviation0.41.93.91.0-0.0-2.01.6
Left kidney weight2.923.238.06.25.1-1.75.1
Right kidney weight3.524.240.06.34.8-1.35.6
Cocaine induced anxiety0.20.50.70.80.60.70.7
Post-drug Anxiety0.30.30.50.60.40.40.7
Baseline Anxiety0.10.10.2-0.4-0.40.0-0.2
Tail length0.21.32.21.51.3-0.01.1
Length with tail0.73.14.42.11.9-0.12.1
Length without tail0.42.03.81.61.20.52.0
Times rat made contact with spout0.80.91.6-0.9-0.9-1.3-0.7
Lifetime Intake2.12.67.2-1.2-1.2-2.7-0.4
Liver weight, left0.40.61.20.7-1.10.60.7
Liver weight, right2.84.99.53.11.80.02.6
Locomotor activity2.53.98.22.91.1-0.82.3
Locomotor testing distance0.51.22.21.5-0.4-0.51.4
Locomotor testing rearing0.31.12.31.50.00.01.5
Locomotion in novel chamber0.40.61.30.6-1.1-0.20.8
Locomotion in novel chamber post-restriction0.30.81.81.40.6-0.31.0
Fecal boli incidents, locomotor time 10.00.10.10.30.3-0.10.4
Change in fecal boli incidents, locomotor task0.80.91.40.81.01.20.7
Time >=10cm from walls, locomotor time 10.10.10.3-0.20.5-0.2-0.2
Bouts of movement, locomotor time 12.02.63.8-1.8-0.61.7-1.9
Total resting periods, locomotor time 12.83.35.2-2.2-0.61.7-2.3
Rest time, locomotor task time 12.03.15.6-2.4-1.21.3-2.0
Distance moved, locomotor task time 10.82.33.41.41.4-1.81.3
Vertical activity count, locomotor time 10.42.54.42.10.4-1.51.9
Time >=10cm from walls, locomotor time 20.41.02.1-1.3-0.5-0.1-1.5
Bouts of movement, locomotor time 20.51.65.4-0.40.32.3-0.9
Total resting periods, locomotor time 20.31.24.2-0.20.42.0-0.6
Rest time, locomotor task time 20.30.51.3-1.10.40.6-0.6
Distance moved, locomotor task time 20.60.71.11.00.4-1.00.9
Vertical activity count, locomotor time 20.20.50.80.9-0.80.70.3
Light reinforcement 10.20.92.1-0.00.91.5-0.7
Light reinforcement 20.40.81.4-0.60.61.1-1.2
Bone: marrow area1.63.96.02.42.3-1.31.6
Bone: maximum diameter1.63.24.92.21.9-0.62.0
Bone: maximum force1.32.55.31.72.3-0.51.2
Bone: maximum moment1.22.34.61.62.2-0.81.2
Mean time between licks in bursts0.00.20.30.2-0.5-0.20.6
Mean num. licks in bursts0.71.95.4-1.2-0.6-2.3-0.7
Cd content in liver0.91.03.4-0.4-0.5-1.8-0.3
Co content in liver3.33.95.6-2.4-2.0-2.1-1.2
Cu content in liver0.10.10.30.20.50.00.1
Fe content in liver0.91.12.2-1.0-1.50.4-1.0
K content in liver0.30.30.5-0.20.70.1-0.7
Mg content in liver1.92.13.9-1.4-0.41.5-2.0
Mn content in liver0.30.30.6-0.50.80.1-0.6
Na content in liver0.20.20.6-0.20.40.3-0.8
Rb content in liver0.50.61.2-0.6-1.10.6-0.8
Se content in liver0.80.92.0-1.4-0.1-0.1-1.2
Sr content in liver1.81.62.21.41.3-0.81.5
Zn content in liver0.40.50.9-0.8-0.9-0.4-0.6
Bone: minimum diameter2.34.57.82.82.2-0.82.2
Time in familiar zone, hab. session 10.10.10.10.0-0.40.3-0.3
Time in novel zone, hab. session 10.40.40.7-0.50.8-0.8-0.3
Total zone transitions, hab. session 11.31.93.71.91.1-0.81.4
Total locomotion distance, hab. session 11.11.62.61.60.6-1.60.9
Locomotion velocity, hab. session 12.23.15.32.30.9-1.81.7
Time in familiar zone, hab. session 20.10.20.4-0.5-0.6-0.0-0.1
Time in novel zone, hab. session 20.30.41.00.30.5-1.00.3
Total zone transitions, hab. session 20.40.51.20.61.10.60.1
Total locomotion distance, hab. session 20.10.10.20.10.30.5-0.3
Locomotion velocity, hab. session 20.20.20.60.10.40.8-0.3
Novel to familiar place preference ratio0.50.71.90.5-0.3-1.40.8
Novelty place preference0.60.82.20.6-0.2-1.50.8
Time in novel zone, NPP test1.01.23.50.6-0.2-1.90.9
Total zone transitions, NPP test0.40.61.11.01.0-0.10.5
Total locomotion distance, NPP test0.71.01.61.30.6-1.01.0
Locomotion velocity, NPP test0.20.30.70.80.3-0.40.3
Intraocular pressure0.40.60.80.7-0.9-0.80.7
Delta distance traveled before/after self-admin0.20.20.80.10.90.3-0.1
Delta ambulatory time before/after self-admin0.30.61.3-0.80.30.6-1.1
Parametrial fat weight0.30.71.21.0-0.1-0.71.1
Pavlov. Cond. lever latency0.40.50.8-0.8-0.9-0.6-0.3
Pavlov. Cond. magazine entry latency0.20.20.90.00.1-0.90.0
Pavlov. Cond. change in total contacts0.60.60.90.90.70.90.5
Pavlov. Cond. index score0.40.50.90.90.90.30.5
Pavlov. Cond. latency score0.20.30.50.70.60.30.3
Pavlov. Cond. lever contacts0.40.51.10.81.00.60.2
Pavlov. Cond. magazine entry number0.10.20.3-0.3-0.50.5-0.2
Pavlov. Cond. intertrial magazine entries0.30.41.0-0.40.6-1.0-0.2
Pavlov. Cond. lever-magazine prob. diff.0.60.71.21.11.10.50.5
Pavlov. Cond. response bias0.50.61.01.01.0-0.30.7
Pavlov. Cond. lever latency0.60.81.8-0.4-1.1-1.30.3
Pavlov. Cond. magazine entry latency1.01.43.31.11.80.20.9
Pavlov. Cond. change in total contacts0.41.11.41.11.21.20.7
Pavlov. Cond. index score0.61.01.50.91.21.20.4
Pavlov. Cond. latency score0.61.01.80.81.11.40.3
Pavlov. Cond. lever contacts0.71.01.80.61.41.3-0.1
Pavlov. Cond. magazine entry number0.81.02.3-1.1-1.5-0.3-0.8
Pavlov. Cond. intertrial magazine entries0.40.91.2-0.8-1.1-0.8-1.0
Pavlov. Cond. lever-magazine prob. diff.0.50.81.40.71.11.20.3
Pavlov. Cond. response bias1.11.53.91.22.00.80.4
Time in closed arm before self-admin0.71.23.8-0.10.22.0-0.9
Time in closed arm after self-admin0.70.81.3-0.6-0.91.1-0.7
Time in open arm before self-admin0.40.40.8-0.7-0.90.6-0.4
Time in open arm after self-admin0.00.00.1-0.30.1-0.1-0.1
Bone: periosteal estimation2.56.09.33.12.7-1.42.4
Bone: periosteal perimeter2.14.16.22.52.2-1.21.9
Bone: post-yield work0.30.50.80.90.70.30.7
Progressive ratio test 1 active lever presses0.50.92.0-0.9-0.4-1.4-0.7
Progressive ratio test 1 breakpoint0.50.91.9-1.0-0.4-1.4-0.7
Progressive ratio test 1 inactive lever presses0.10.41.2-0.3-0.2-1.1-0.4
Progressive ratio test 2 active lever presses1.82.64.5-1.5-1.7-2.1-0.8
Progressive ratio test 2 breakpoint1.82.34.9-1.3-1.5-2.2-0.6
Progressive ratio test 2 inactive lever presses1.13.56.0-1.5-2.4-2.2-0.7
Incentive Sensitization - Responses0.41.22.9-1.1-1.7-0.8-0.1
Incentive Sensitization - Breakpoint0.61.43.2-1.2-1.8-1.0-0.1
Sum of active levers in priming session hrs 5-60.20.20.50.50.1-0.10.7
Progressive ratio1.85.47.72.82.8-0.52.4
Food seeking constrained by brief footshock2.02.54.12.01.9-0.61.3
Seeking ratio, punishment vs. effort0.40.81.2-1.0-1.00.3-1.1
Retroperitoneal fat weight0.10.52.00.20.1-1.40.4
Reaction time number correct0.10.41.1-0.4-1.1-0.3-0.2
Reaction time mean minus median0.21.01.71.10.6-0.91.3
Reaction time mean minus median AUC0.10.71.90.50.4-1.40.8
Reaction time num false alarms0.71.23.61.0-0.20.31.9
Reaction time num false alarms AUC0.41.03.20.8-0.40.21.8
Reaction time trials correct on left0.10.41.1-0.4-1.1-0.3-0.2
Reaction time trials on left0.10.41.2-0.5-1.1-0.3-0.3
Reaction time mean0.61.32.71.60.4-0.51.5
Reaction time mean AUC0.40.91.61.30.2-0.71.2
Median of all reaction times0.60.91.91.40.2-0.31.2
Reaction time omissions0.10.10.3-0.30.1-0.6-0.1
Reaction time false alarm rate0.50.61.90.6-0.10.41.4
Reaction time premature initiation rate2.53.87.82.42.80.21.4
Reaction time premature initiations0.82.54.52.02.10.11.2
Std. dev. reaction times0.31.01.91.30.1-0.61.4
Reaction time trials completed0.10.41.2-0.5-1.1-0.3-0.3
Reaction time trials AUC0.10.51.5-0.6-1.2-0.1-0.3
Run reversals in cocaine runway, females2.73.06.7-1.3-2.60.7-1.8
Run reversals in cocaine runway, males0.10.10.2-0.30.50.2-0.3
Latency to leave start box in cocaine runway1.62.24.91.20.9-2.21.3
Latency to leave start box in cocaine runway, F1.21.55.5-0.6-0.0-2.4-0.5
Latency to leave start box in cocaine runway, M6.76.311.73.31.3-1.13.4
Std. dev. time between licks in bursts0.10.10.40.00.00.60.1
Total sessions with >9 infusions1.21.55.70.0-0.2-2.40.4
Short access day 1 total inactive lever presses0.30.61.5-1.0-0.3-1.2-0.2
Short access day 10 total inactive lever presses0.00.20.4-0.30.7-0.0-0.6
Short access day 1 total infusions0.81.53.2-1.0-1.2-1.8-0.6
Short access day 10 total infusions2.33.79.0-1.7-1.5-3.0-0.9
Short access total infusions1.52.15.8-1.1-1.0-2.4-0.6
Short access day 1 locomotion1.01.65.30.4-0.1-2.30.9
Short access day 10 total locomotion0.10.51.1-0.6-1.00.4-0.6
Short access total locomotion1.21.85.70.6-0.2-2.41.0
One hour access (0.3 mA shock)0.20.20.40.2-0.7-0.50.4
Compulsive drug intake1.21.83.01.21.51.70.7
One hour access (shock baseline)0.92.43.9-1.2-2.0-1.9-0.8
Social response proportion0.81.02.5-0.11.1-1.6-0.6
Social responses3.64.76.52.12.2-2.51.7
Social time0.81.33.90.50.8-2.00.5
Soleus weight0.10.41.30.21.10.3-0.1
Bone: stiffness1.83.27.91.82.8-0.91.0
Tibialis anterior weight1.34.69.32.23.11.71.2
Time to tail flick, vehicle, before self-admin0.60.81.6-1.1-0.50.4-1.3
Time to tail flick, vehicle, after self-admin0.61.35.0-0.30.4-2.2-0.0
Time to tail flick, test, before self-admin0.20.30.5-0.4-0.7-0.6-0.3
Time to tail flick, test, after self-admin0.00.00.1-0.20.0-0.30.1
Delta time to tail flick, vehicle, before/after SA3.53.87.31.31.8-2.71.7
Delta time to tail flick, test, before/after SA0.30.40.50.60.6-0.50.7
Tibia length0.10.40.70.80.7-0.50.4
Ambulatory time before self-admin0.41.22.21.50.20.71.4
Ambulatory time after self-admin0.40.72.00.70.11.40.4
Bone: tissue strength0.40.41.0-1.0-0.40.3-0.8
Total heroin consumption0.20.20.40.1-0.4-0.50.6
Bone: trabecular number0.00.10.10.3-0.4-0.30.2
Bone: trabecular spacing0.20.30.90.10.6-0.90.4
Bone: trabecular thickness0.30.50.90.9-0.00.40.9
Bone: trabecular tissue density3.66.39.73.12.8-0.82.6
Water consumed over 24 hours0.20.41.30.2-0.3-1.10.5
Number of responses in last shaping day2.73.65.32.21.6-1.32.3