Atxn1l

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Atxn1l 0.07 0.03 6.4e-04 0.01 0.03 0.03 0.03 2.2e-02 8.4e-04 4.6e-04 2.1e-03
2 Brain mRNA stability Atxn1l 0.07 0.04 1.1e-04 0.05 0.03 0.04 0.05 1.5e-05 6.7e-04 1.9e-04 3.3e-05
3 Adipose gene expression Atxn1l 0.03 0.02 5.2e-03 -0 0.01 -0 -0 9.1e-01 2.4e-02 5.7e-01 5.3e-01
4 IC mRNA stability Atxn1l 0.82 0 7.6e-06 0.09 0.12 0.21 0.18 1.0e-04 1.4e-05 3.0e-09 5.9e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.2-0.20.5-0.1-0.4
Area under the delay curve0.10.10.40.3-0.00.10.6
BMI with tail0.93.14.6-2.2-1.0-1.7-2.0
BMI without tail0.72.23.3-1.8-1.0-1.4-1.7
Body weight1.77.411.4-3.4-2.5-1.3-3.2
Weight adjusted by age0.30.41.0-0.1-0.3-1.0-0.7
Bone surface1.01.93.7-1.9-1.2-0.3-1.5
Bone volume0.91.62.8-1.7-1.0-0.1-1.6
Breakpoint value in progressive ratio session0.20.20.6-0.50.1-0.2-0.8
Number of licking bursts0.50.72.2-0.80.11.5-0.4
Context. condit. distance diff. score0.40.40.6-0.8-0.80.7-0.2
Locomotion velocity, session 10.10.10.1-0.40.4-0.4-0.2
Locomotion distance, session 10.20.30.90.20.9-0.5-0.0
Locomotion velocity, session 20.40.51.8-0.20.51.30.0
Locomotion distance, session 20.20.31.0-0.1-0.1-1.0-0.2
Locomotion velocity, session 31.71.93.11.51.8-0.61.3
Locomotion distance, session 30.20.30.80.40.3-0.90.3
Stereotopy head waving bouts, day 33.44.04.51.92.02.02.1
Stereotopy head waving duration, day 32.32.73.61.31.41.91.8
Locomotion velocity, session 71.51.72.61.30.8-1.41.6
Locomotion distance, session 70.91.23.9-0.4-0.8-2.00.0
Stereotopy head waving bouts, day 72.83.17.51.32.71.70.7
Stereotopy head waving duration, day 73.64.38.71.83.02.11.1
Locomotion velocity, session 80.30.41.1-0.4-1.00.4-0.1
Locomotion distance, session 80.20.30.6-0.8-0.7-0.2-0.4
Degree of sensitization distance0.60.70.9-0.9-0.8-0.8-0.6
Degree of sensitization stereotypy2.42.67.21.32.71.00.5
Conditioned locomotion0.30.40.8-0.90.20.1-0.8
Cocaine response after cond. corrected0.40.51.01.00.4-0.80.3
Cocaine response after cond. not corrected0.30.30.60.70.2-0.80.3
Cocaine response before conditioning0.10.10.1-0.3-0.30.20.2
Saline control response1.31.84.8-1.2-0.92.2-0.3
Bone: connectivity density0.20.30.6-0.8-0.1-0.4-0.7
Bone: cortical apparent density0.20.30.7-0.60.2-0.0-0.9
Bone: cortical area1.42.13.5-1.9-1.4-0.6-1.7
Bone: cortical porosity0.50.61.20.8-0.60.41.1
Bone: cortical porosity0.40.40.90.7-0.50.01.0
Bone: cortical thickness0.20.30.8-0.7-0.2-0.0-0.9
Bone: cortical thickness0.00.00.0-0.1-0.2-0.1-0.1
Bone: cortical tissue density0.20.30.8-0.70.2-0.1-0.9
Condit. Reinf. active minus inactive responses0.50.61.90.5-0.1-1.40.5
Condit. Reinf. active-inactive response ratio0.20.20.40.5-0.2-0.60.6
Condit. Reinf. active responses0.70.92.60.2-0.8-1.60.4
Condit. Reinf. inactive responses0.81.02.0-0.4-1.4-1.3-0.4
Incentive salience index mean0.40.51.3-0.2-0.7-1.10.2
Condit. Reinf. lever presses0.40.61.6-0.7-1.3-0.5-0.1
Condit. Reinf. active minus inactive responses0.30.41.10.4-0.7-0.21.0
Condit. Reinf. active-inactive response ratio0.40.50.90.90.4-0.20.9
Condit. Reinf. active responses0.50.71.4-0.0-1.20.61.0
Condit. Reinf. inactive responses0.71.02.0-1.1-1.40.7-0.0
Condit. Reinf. lever presses0.81.12.5-0.5-1.61.20.4
Condit. Reinf. lever reinforcers received0.50.81.7-0.1-1.30.70.9
Conditioned reinforcement - actives1.22.06.7-0.30.9-2.6-0.8
Conditioned reinforcement - inactives1.62.33.9-1.40.2-2.0-1.8
Conditioned locomotion1.01.24.4-0.50.3-2.1-0.5
Patch foraging indifference point 0 sec0.40.82.6-0.5-0.11.6-0.5
Patch foraging indifference point AUC1.11.64.30.50.62.11.3
Delay disc. indifference point, 0s delay2.32.54.51.60.81.52.1
Delay disc. indifference point, 16s delay0.10.10.10.10.40.20.3
Delay disc. indifference point, 2s delay0.20.20.4-0.2-0.60.30.6
Delay disc. indifference point, 24s delay0.91.11.8-1.3-1.1-0.2-1.1
Delay disc. indifference point, 4s delay1.61.72.91.61.00.51.7
Delay disc. indifference point, 8s delay0.00.00.1-0.10.1-0.3-0.2
Indifference point function ln k1.11.82.6-1.2-1.6-1.0-1.5
Indifference point function log k1.11.82.6-1.2-1.6-1.0-1.5
Patch foraging total patch changes 0 sec0.40.82.5-0.7-0.31.6-0.6
Patch foraging total patch changes 12 sec0.60.82.9-0.2-0.11.70.2
Patch foraging total patch changes 18 sec0.50.81.00.91.00.61.0
Patch foraging total patch changes 24 sec0.91.52.7-1.5-0.41.1-1.6
Patch foraging total patch changes 6 sec1.21.83.1-1.8-0.60.8-1.7
Patch foraging time to switch 0 sec0.51.03.30.10.6-1.8-0.5
Patch foraging water rate 0 sec0.20.30.8-0.7-0.10.9-0.1
Patch foraging water rate 12 sec0.71.42.4-1.5-0.41.3-1.2
Patch foraging water rate 18 sec1.82.85.6-2.4-1.30.4-1.9
Patch foraging water rate 24 sec0.30.51.20.40.41.10.6
Patch foraging water rate 6 sec1.21.83.6-1.9-0.11.2-1.5
Seeking ratio, delayed vs. immediate footshock1.01.22.40.81.2-1.60.4
Distance traveled before self-admin1.82.44.3-2.1-0.61.1-1.9
Distance traveled after self-admin0.60.81.4-1.0-0.01.2-0.9
Extensor digitorum longus weight0.52.14.3-1.2-2.11.7-0.3
Bone: elastic displacement0.70.81.61.20.90.30.8
Bone: elastic work0.00.00.10.20.0-0.3-0.1
Bone: endosteal estimation2.04.36.6-2.6-2.4-1.4-1.8
Bone: endosteal perimeter1.83.85.4-2.3-2.1-1.4-1.8
Epididymis fat weight1.34.35.4-2.3-2.1-1.4-2.3
Delta time in closed arm before/after self-admin0.40.41.40.31.2-0.1-0.4
Delta time in open arm before/after self-admin0.30.30.8-0.4-0.90.60.2
Diff in mean of infusions in LGA sessions0.20.20.5-0.4-0.2-0.4-0.7
Delay discount exponential model param0.00.00.1-0.00.30.1-0.3
Extinction: sum of active levers before priming0.30.30.50.70.20.50.6
Active lever presses in extinction session 60.40.40.60.80.7-0.00.7
Bone: final force1.01.63.1-1.5-1.8-0.3-1.0
Bone: final moment0.81.42.7-1.3-1.6-0.6-0.9
Food consumed during 24 hour testing period0.30.50.7-0.8-0.70.3-0.7
Glucose0.50.82.20.3-1.5-0.80.6
Heart weight1.92.95.2-1.9-1.7-0.3-2.3
Delay discount hyperbolic model param0.10.10.3-0.30.10.0-0.5
Intermittent access intake day 1-15 change0.10.30.60.50.8-0.50.1
Intermittent access intake escalation0.10.30.70.20.6-0.8-0.3
Intermittent access intake escalation 20.30.30.6-0.10.4-0.7-0.8
Intermitt. access day 1 inactive lever presses0.41.65.20.80.7-2.30.4
Intermitt. access day 15 inactive lever presses1.42.97.7-1.20.1-2.8-1.5
Intermitt. access escalation Index0.60.91.70.90.50.81.3
Intermittent access day 1 total infusions2.64.26.02.42.3-1.51.8
Intermittent access day 15 total infusions1.52.36.21.01.4-2.5-0.0
Intermittent access terminal intake (last 3 days)2.12.75.91.41.7-2.40.4
Intermittent access total infusions2.32.76.71.41.4-2.60.5
Intermittent access day 1 locomotion0.91.21.61.21.2-0.71.1
Intermittent access day 15 total locomotion0.61.02.30.41.5-1.2-0.2
Intermittent access total locomotion1.31.63.01.11.7-1.30.6
Intermittent access standard deviation0.91.93.9-1.00.0-2.0-1.6
Left kidney weight5.023.238.0-6.2-5.1-1.7-5.1
Right kidney weight5.324.240.0-6.3-4.8-1.3-5.6
Cocaine induced anxiety0.30.50.7-0.8-0.60.7-0.7
Post-drug Anxiety0.30.30.5-0.6-0.40.4-0.7
Baseline Anxiety0.10.10.20.40.40.00.2
Tail length0.31.32.2-1.5-1.3-0.0-1.1
Length with tail0.73.14.4-2.1-1.9-0.1-2.1
Length without tail0.62.03.8-1.6-1.20.5-2.0
Times rat made contact with spout0.80.91.60.90.9-1.30.7
Lifetime Intake2.12.67.21.21.2-2.70.4
Liver weight, left0.40.61.2-0.71.10.6-0.7
Liver weight, right2.84.99.5-3.1-1.80.0-2.6
Locomotor activity2.53.98.2-2.9-1.1-0.8-2.3
Locomotor testing distance0.61.22.2-1.50.4-0.5-1.4
Locomotor testing rearing0.61.12.3-1.5-0.00.0-1.5
Locomotion in novel chamber0.50.61.3-0.61.1-0.2-0.8
Locomotion in novel chamber post-restriction0.50.81.8-1.4-0.6-0.3-1.0
Fecal boli incidents, locomotor time 10.10.10.1-0.3-0.3-0.1-0.4
Change in fecal boli incidents, locomotor task0.90.91.4-0.8-1.01.2-0.7
Time >=10cm from walls, locomotor time 10.10.10.30.2-0.5-0.20.2
Bouts of movement, locomotor time 12.32.63.81.80.61.71.9
Total resting periods, locomotor time 12.93.35.22.20.61.72.3
Rest time, locomotor task time 12.53.15.62.41.21.32.0
Distance moved, locomotor task time 11.52.33.4-1.4-1.4-1.8-1.3
Vertical activity count, locomotor time 11.12.54.4-2.1-0.4-1.5-1.9
Time >=10cm from walls, locomotor time 20.71.02.11.30.5-0.11.5
Bouts of movement, locomotor time 21.01.65.40.4-0.32.30.9
Total resting periods, locomotor time 20.71.24.20.2-0.42.00.6
Rest time, locomotor task time 20.40.51.31.1-0.40.60.6
Distance moved, locomotor task time 20.60.71.1-1.0-0.4-1.0-0.9
Vertical activity count, locomotor time 20.40.50.8-0.90.80.7-0.3
Light reinforcement 10.30.92.10.0-0.91.50.7
Light reinforcement 20.50.81.40.6-0.61.11.2
Bone: marrow area1.83.96.0-2.4-2.3-1.3-1.6
Bone: maximum diameter1.73.24.9-2.2-1.9-0.6-2.0
Bone: maximum force1.42.55.3-1.7-2.3-0.5-1.2
Bone: maximum moment1.32.34.6-1.6-2.2-0.8-1.2
Mean time between licks in bursts0.10.20.3-0.20.5-0.2-0.6
Mean num. licks in bursts1.21.95.41.20.6-2.30.7
Cd content in liver0.91.03.40.40.5-1.80.3
Co content in liver3.33.95.62.42.0-2.11.2
Cu content in liver0.10.10.3-0.2-0.50.0-0.1
Fe content in liver0.91.12.21.01.50.41.0
K content in liver0.30.30.50.2-0.70.10.7
Mg content in liver2.02.13.91.40.41.52.0
Mn content in liver0.30.30.60.5-0.80.10.6
Na content in liver0.20.20.60.2-0.40.30.8
Rb content in liver0.50.61.20.61.10.60.8
Se content in liver0.80.92.01.40.1-0.11.2
Sr content in liver1.81.62.2-1.4-1.3-0.8-1.5
Zn content in liver0.40.50.90.80.9-0.40.6
Bone: minimum diameter2.54.57.8-2.8-2.2-0.8-2.2
Time in familiar zone, hab. session 10.10.10.1-0.00.40.30.3
Time in novel zone, hab. session 10.40.40.70.5-0.8-0.80.3
Total zone transitions, hab. session 11.31.93.7-1.9-1.1-0.8-1.4
Total locomotion distance, hab. session 11.11.62.6-1.6-0.6-1.6-0.9
Locomotion velocity, hab. session 12.23.15.3-2.3-0.9-1.8-1.7
Time in familiar zone, hab. session 20.10.20.40.50.6-0.00.1
Time in novel zone, hab. session 20.40.41.0-0.3-0.5-1.0-0.3
Total zone transitions, hab. session 20.40.51.2-0.6-1.10.6-0.1
Total locomotion distance, hab. session 20.10.10.2-0.1-0.30.50.3
Locomotion velocity, hab. session 20.20.20.6-0.1-0.40.80.3
Novel to familiar place preference ratio0.60.71.9-0.50.3-1.4-0.8
Novelty place preference0.80.82.2-0.60.2-1.5-0.8
Time in novel zone, NPP test1.11.23.5-0.60.2-1.9-0.9
Total zone transitions, NPP test0.40.61.1-1.0-1.0-0.1-0.5
Total locomotion distance, NPP test0.71.01.6-1.3-0.6-1.0-1.0
Locomotion velocity, NPP test0.20.30.7-0.8-0.3-0.4-0.3
Intraocular pressure0.40.60.8-0.70.9-0.8-0.7
Delta distance traveled before/after self-admin0.20.20.8-0.1-0.90.30.1
Delta ambulatory time before/after self-admin0.50.61.30.8-0.30.61.1
Parametrial fat weight0.30.71.2-1.00.1-0.7-1.1
Pavlov. Cond. lever latency0.40.50.80.80.9-0.60.3
Pavlov. Cond. magazine entry latency0.20.20.9-0.0-0.1-0.9-0.0
Pavlov. Cond. change in total contacts0.60.60.9-0.9-0.70.9-0.5
Pavlov. Cond. index score0.40.50.9-0.9-0.90.3-0.5
Pavlov. Cond. latency score0.20.30.5-0.7-0.60.3-0.3
Pavlov. Cond. lever contacts0.40.51.1-0.8-1.00.6-0.2
Pavlov. Cond. magazine entry number0.10.20.30.30.50.50.2
Pavlov. Cond. intertrial magazine entries0.30.41.00.4-0.6-1.00.2
Pavlov. Cond. lever-magazine prob. diff.0.60.71.2-1.1-1.10.5-0.5
Pavlov. Cond. response bias0.50.61.0-1.0-1.0-0.3-0.7
Pavlov. Cond. lever latency0.60.81.80.41.1-1.3-0.3
Pavlov. Cond. magazine entry latency1.11.43.3-1.1-1.80.2-0.9
Pavlov. Cond. change in total contacts0.71.11.4-1.1-1.21.2-0.7
Pavlov. Cond. index score0.71.01.5-0.9-1.21.2-0.4
Pavlov. Cond. latency score0.71.01.8-0.8-1.11.4-0.3
Pavlov. Cond. lever contacts0.71.01.8-0.6-1.41.30.1
Pavlov. Cond. magazine entry number0.81.02.31.11.5-0.30.8
Pavlov. Cond. intertrial magazine entries0.60.91.20.81.1-0.81.0
Pavlov. Cond. lever-magazine prob. diff.0.60.81.4-0.7-1.11.2-0.3
Pavlov. Cond. response bias1.11.53.9-1.2-2.00.8-0.4
Time in closed arm before self-admin0.91.23.80.1-0.22.00.9
Time in closed arm after self-admin0.70.81.30.60.91.10.7
Time in open arm before self-admin0.40.40.80.70.90.60.4
Time in open arm after self-admin0.00.00.10.3-0.1-0.10.1
Bone: periosteal estimation2.86.09.3-3.1-2.7-1.4-2.4
Bone: periosteal perimeter2.44.16.2-2.5-2.2-1.2-1.9
Bone: post-yield work0.30.50.8-0.9-0.70.3-0.7
Progressive ratio test 1 active lever presses0.70.92.00.90.4-1.40.7
Progressive ratio test 1 breakpoint0.70.91.91.00.4-1.40.7
Progressive ratio test 1 inactive lever presses0.30.41.20.30.2-1.10.4
Progressive ratio test 2 active lever presses2.22.64.51.51.7-2.10.8
Progressive ratio test 2 breakpoint2.02.34.91.31.5-2.20.6
Progressive ratio test 2 inactive lever presses2.13.56.01.52.4-2.20.7
Incentive Sensitization - Responses0.91.22.91.11.7-0.80.1
Incentive Sensitization - Breakpoint1.11.43.21.21.8-1.00.1
Sum of active levers in priming session hrs 5-60.20.20.5-0.5-0.1-0.1-0.7
Progressive ratio3.45.47.7-2.8-2.8-0.5-2.4
Food seeking constrained by brief footshock2.02.54.1-2.0-1.9-0.6-1.3
Seeking ratio, punishment vs. effort0.60.81.21.01.00.31.1
Retroperitoneal fat weight0.10.52.0-0.2-0.1-1.4-0.4
Reaction time number correct0.20.41.10.41.1-0.30.2
Reaction time mean minus median0.41.01.7-1.1-0.6-0.9-1.3
Reaction time mean minus median AUC0.30.71.9-0.5-0.4-1.4-0.8
Reaction time num false alarms0.91.23.6-1.00.20.3-1.9
Reaction time num false alarms AUC0.61.03.2-0.80.40.2-1.8
Reaction time trials correct on left0.20.41.10.41.1-0.30.2
Reaction time trials on left0.20.41.20.51.1-0.30.3
Reaction time mean0.81.32.7-1.6-0.4-0.5-1.5
Reaction time mean AUC0.60.91.6-1.3-0.2-0.7-1.2
Median of all reaction times0.60.91.9-1.4-0.2-0.3-1.2
Reaction time omissions0.10.10.30.3-0.1-0.60.1
Reaction time false alarm rate0.50.61.9-0.60.10.4-1.4
Reaction time premature initiation rate2.83.87.8-2.4-2.80.2-1.4
Reaction time premature initiations1.42.54.5-2.0-2.10.1-1.2
Std. dev. reaction times0.61.01.9-1.3-0.1-0.6-1.4
Reaction time trials completed0.20.41.20.51.1-0.30.3
Reaction time trials AUC0.30.51.50.61.2-0.10.3
Run reversals in cocaine runway, females3.03.06.71.32.60.71.8
Run reversals in cocaine runway, males0.10.10.20.3-0.50.20.3
Latency to leave start box in cocaine runway2.02.24.9-1.2-0.9-2.2-1.3
Latency to leave start box in cocaine runway, F1.31.55.50.60.0-2.40.5
Latency to leave start box in cocaine runway, M6.86.311.7-3.3-1.3-1.1-3.4
Std. dev. time between licks in bursts0.10.10.4-0.0-0.00.6-0.1
Total sessions with >9 infusions1.21.55.7-0.00.2-2.4-0.4
Short access day 1 total inactive lever presses0.50.61.51.00.3-1.20.2
Short access day 10 total inactive lever presses0.10.20.40.3-0.7-0.00.6
Short access day 1 total infusions1.11.53.21.01.2-1.80.6
Short access day 10 total infusions2.93.79.01.71.5-3.00.9
Short access total infusions1.72.15.81.11.0-2.40.6
Short access day 1 locomotion1.31.65.3-0.40.1-2.3-0.9
Short access day 10 total locomotion0.30.51.10.61.00.40.6
Short access total locomotion1.51.85.7-0.60.2-2.4-1.0
One hour access (0.3 mA shock)0.20.20.4-0.20.7-0.5-0.4
Compulsive drug intake1.51.83.0-1.2-1.51.7-0.7
One hour access (shock baseline)1.62.43.91.22.0-1.90.8
Social response proportion0.91.02.50.1-1.1-1.60.6
Social responses3.64.76.5-2.1-2.2-2.5-1.7
Social time0.91.33.9-0.5-0.8-2.0-0.5
Soleus weight0.10.41.3-0.2-1.10.30.1
Bone: stiffness2.03.27.9-1.8-2.8-0.9-1.0
Tibialis anterior weight1.44.69.3-2.2-3.11.7-1.2
Time to tail flick, vehicle, before self-admin0.80.81.61.10.50.41.3
Time to tail flick, vehicle, after self-admin1.01.35.00.3-0.4-2.20.0
Time to tail flick, test, before self-admin0.30.30.50.40.7-0.60.3
Time to tail flick, test, after self-admin0.00.00.10.2-0.0-0.3-0.1
Delta time to tail flick, vehicle, before/after SA4.03.87.3-1.3-1.8-2.7-1.7
Delta time to tail flick, test, before/after SA0.40.40.5-0.6-0.6-0.5-0.7
Tibia length0.20.40.7-0.8-0.7-0.5-0.4
Ambulatory time before self-admin0.81.22.2-1.5-0.20.7-1.4
Ambulatory time after self-admin0.60.72.0-0.7-0.11.4-0.4
Bone: tissue strength0.40.41.01.00.40.30.8
Total heroin consumption0.20.20.4-0.10.4-0.5-0.6
Bone: trabecular number0.10.10.1-0.30.4-0.3-0.2
Bone: trabecular spacing0.30.30.9-0.1-0.6-0.9-0.4
Bone: trabecular thickness0.40.50.9-0.90.00.4-0.9
Bone: trabecular tissue density4.36.39.7-3.1-2.8-0.8-2.6
Water consumed over 24 hours0.30.41.3-0.20.3-1.1-0.5
Number of responses in last shaping day3.23.65.3-2.2-1.6-1.3-2.3