Atad2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IL alternative polyA NM_001427483.1 0.29 0.15 7.9e-03 0.07 0.13 0.06 0.06 1.1e-02 6.4e-04 1.5e-02 1.3e-02
2 IL alternative polyA XM_039113113.2 0.32 0.16 5.8e-03 0.06 0.13 0.08 0.06 1.2e-02 5.7e-04 6.8e-03 1.3e-02
3 IL alternative polyA NM_001427483.1 0.33 0.18 5.1e-03 0 0.1 0.06 0.05 2.9e-01 2.3e-03 1.5e-02 2.4e-02
4 IL alternative polyA XM_039113113.2 0.29 0.17 8.6e-03 -0 0.09 0.04 0.03 3.7e-01 4.5e-03 3.1e-02 7.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.7-0.40.00.7-0.8
Area under the delay curve0.20.30.4-0.40.4-0.60.6
BMI with tail2.48.311.23.3-3.32.4-2.4
BMI without tail1.910.212.33.5-3.52.8-2.9
Body weight1.77.511.43.4-3.22.1-2.0
Weight adjusted by age0.20.60.70.7-0.70.8-0.8
Bone surface0.00.00.1-0.30.10.1-0.2
Bone volume0.10.10.4-0.60.30.1-0.2
Breakpoint value in progressive ratio session0.40.71.2-1.10.9-0.70.6
Number of licking bursts0.30.91.71.3-1.20.6-0.6
Context. condit. distance diff. score0.70.91.40.5-0.71.1-1.2
Locomotion velocity, session 10.10.10.20.4-0.40.1-0.1
Locomotion distance, session 10.30.40.5-0.70.7-0.50.5
Locomotion velocity, session 20.00.00.10.3-0.20.1-0.1
Locomotion distance, session 20.20.20.3-0.40.4-0.60.6
Locomotion velocity, session 30.40.40.50.6-0.60.7-0.7
Locomotion distance, session 30.50.50.70.6-0.70.8-0.8
Stereotopy head waving bouts, day 30.30.40.8-0.90.7-0.20.1
Stereotopy head waving duration, day 30.00.00.1-0.30.3-0.00.0
Locomotion velocity, session 70.10.10.20.4-0.40.3-0.3
Locomotion distance, session 70.91.11.31.1-1.11.0-1.0
Stereotopy head waving bouts, day 70.10.10.20.4-0.40.1-0.1
Stereotopy head waving duration, day 70.00.00.0-0.00.00.00.0
Locomotion velocity, session 80.10.10.1-0.30.10.3-0.3
Locomotion distance, session 80.10.10.1-0.40.20.3-0.4
Degree of sensitization distance0.40.40.80.9-0.80.4-0.4
Degree of sensitization stereotypy0.10.20.40.6-0.5-0.10.2
Conditioned locomotion0.30.30.6-0.30.10.8-0.8
Cocaine response after cond. corrected0.10.20.3-0.10.2-0.50.5
Cocaine response after cond. not corrected0.60.91.1-0.80.9-1.11.1
Cocaine response before conditioning1.72.03.0-1.71.7-1.11.1
Saline control response0.60.91.3-1.11.1-0.70.7
Bone: connectivity density0.10.20.4-0.1-0.10.5-0.6
Bone: cortical apparent density1.01.62.2-1.11.0-1.51.4
Bone: cortical area0.00.00.00.2-0.1-0.10.1
Bone: cortical porosity1.61.72.4-1.61.5-1.01.1
Bone: cortical porosity0.80.81.5-1.21.1-0.60.6
Bone: cortical thickness0.40.71.3-0.40.5-1.11.1
Bone: cortical thickness0.60.70.8-0.90.8-0.90.8
Bone: cortical tissue density0.81.31.9-0.90.9-1.41.3
Condit. Reinf. active minus inactive responses0.30.30.80.9-0.7-0.10.1
Condit. Reinf. active-inactive response ratio0.40.51.01.0-0.90.2-0.2
Condit. Reinf. active responses0.00.00.00.2-0.1-0.10.1
Condit. Reinf. inactive responses0.20.30.7-0.80.7-0.20.1
Incentive salience index mean0.10.10.30.5-0.4-0.00.1
Condit. Reinf. lever presses0.20.30.4-0.60.6-0.40.5
Condit. Reinf. active minus inactive responses0.20.30.5-0.70.6-0.50.5
Condit. Reinf. active-inactive response ratio0.00.10.1-0.30.3-0.10.2
Condit. Reinf. active responses0.60.81.0-0.80.8-1.01.0
Condit. Reinf. inactive responses0.20.30.4-0.40.4-0.60.6
Condit. Reinf. lever presses2.13.03.1-1.71.7-1.71.8
Condit. Reinf. lever reinforcers received0.81.21.4-0.91.0-1.21.2
Conditioned reinforcement - actives1.14.35.8-2.42.3-1.81.7
Conditioned reinforcement - inactives1.23.34.7-2.22.1-1.51.5
Conditioned locomotion3.34.85.4-2.32.3-2.12.1
Patch foraging indifference point 0 sec0.20.40.60.5-0.50.8-0.8
Patch foraging indifference point AUC0.71.82.61.0-1.01.6-1.6
Delay disc. indifference point, 0s delay0.50.50.9-0.40.5-0.90.9
Delay disc. indifference point, 16s delay0.00.00.0-0.20.1-0.20.2
Delay disc. indifference point, 2s delay1.11.21.7-0.90.9-1.31.3
Delay disc. indifference point, 24s delay0.40.61.1-1.10.8-0.50.4
Delay disc. indifference point, 4s delay0.20.20.2-0.40.5-0.40.4
Delay disc. indifference point, 8s delay0.10.20.2-0.40.4-0.50.4
Indifference point function ln k0.92.72.9-1.71.7-1.61.6
Indifference point function log k0.92.72.9-1.71.7-1.61.6
Patch foraging total patch changes 0 sec0.10.40.50.4-0.50.7-0.7
Patch foraging total patch changes 12 sec2.63.53.71.9-1.91.9-1.8
Patch foraging total patch changes 18 sec1.33.03.61.5-1.61.9-1.9
Patch foraging total patch changes 24 sec0.41.31.51.2-1.21.1-1.1
Patch foraging total patch changes 6 sec1.52.62.81.6-1.61.7-1.6
Patch foraging time to switch 0 sec0.10.50.80.9-0.90.3-0.4
Patch foraging water rate 0 sec0.62.33.8-2.01.9-1.01.0
Patch foraging water rate 12 sec0.20.81.2-0.70.8-1.01.1
Patch foraging water rate 18 sec2.55.56.7-2.52.6-2.12.1
Patch foraging water rate 24 sec0.00.00.00.1-0.10.1-0.1
Patch foraging water rate 6 sec1.92.93.4-1.81.8-1.51.6
Seeking ratio, delayed vs. immediate footshock0.10.10.20.4-0.30.2-0.1
Distance traveled before self-admin0.00.00.00.1-0.10.1-0.1
Distance traveled after self-admin0.00.00.0-0.20.20.0-0.0
Extensor digitorum longus weight0.51.93.0-1.71.6-1.11.0
Bone: elastic displacement0.70.91.3-1.21.0-0.80.7
Bone: elastic work1.01.41.8-1.31.2-1.11.0
Bone: endosteal estimation0.20.50.90.2-0.40.9-0.9
Bone: endosteal perimeter0.61.41.71.0-1.01.3-1.3
Epididymis fat weight6.432.449.27.0-6.54.4-4.3
Delta time in closed arm before/after self-admin0.20.20.40.2-0.30.6-0.6
Delta time in open arm before/after self-admin0.60.71.01.0-1.00.6-0.6
Diff in mean of infusions in LGA sessions0.20.30.40.6-0.60.5-0.5
Delay discount exponential model param0.20.30.30.6-0.50.6-0.5
Extinction: sum of active levers before priming0.10.10.2-0.20.10.4-0.4
Active lever presses in extinction session 60.10.10.1-0.30.20.4-0.3
Bone: final force0.00.00.00.2-0.1-0.10.1
Bone: final moment0.00.00.00.1-0.0-0.10.1
Food consumed during 24 hour testing period0.00.10.1-0.30.3-0.10.2
Glucose1.01.62.11.5-1.51.0-1.1
Heart weight0.20.40.60.7-0.70.5-0.4
Delay discount hyperbolic model param0.20.20.30.5-0.40.6-0.5
Intermittent access intake day 1-15 change0.52.63.3-1.81.7-1.51.4
Intermittent access intake escalation0.42.42.9-1.71.6-1.51.4
Intermittent access intake escalation 20.71.11.5-1.21.1-1.00.9
Intermitt. access day 1 inactive lever presses0.00.00.0-0.10.20.00.0
Intermitt. access day 15 inactive lever presses0.00.20.40.2-0.20.6-0.6
Intermitt. access escalation Index0.41.21.61.3-1.21.0-0.9
Intermittent access day 1 total infusions0.30.81.0-1.01.0-0.80.8
Intermittent access day 15 total infusions1.53.74.1-2.02.0-1.91.8
Intermittent access terminal intake (last 3 days)4.57.98.3-2.92.9-2.72.7
Intermittent access total infusions3.44.04.3-2.12.0-2.01.9
Intermittent access day 1 locomotion2.34.24.9-1.92.0-2.22.2
Intermittent access day 15 total locomotion0.62.22.7-1.21.3-1.61.6
Intermittent access total locomotion4.55.46.1-2.12.2-2.52.4
Intermittent access standard deviation0.20.81.2-1.11.0-0.70.7
Left kidney weight0.10.60.70.8-0.80.7-0.7
Right kidney weight0.42.63.51.9-1.81.4-1.3
Cocaine induced anxiety0.10.20.40.2-0.40.5-0.6
Post-drug Anxiety2.42.72.91.7-1.71.6-1.6
Baseline Anxiety0.71.11.91.4-1.10.8-0.7
Tail length0.00.20.3-0.50.5-0.50.5
Length with tail0.00.10.10.2-0.1-0.40.4
Length without tail0.00.00.10.3-0.2-0.10.1
Times rat made contact with spout0.10.10.2-0.40.30.4-0.4
Lifetime Intake3.54.34.5-2.12.1-2.12.0
Liver weight, left0.30.61.20.30.0-1.01.1
Liver weight, right1.42.44.52.1-2.00.8-0.8
Locomotor activity1.72.74.22.0-1.91.2-1.2
Locomotor testing distance1.33.14.12.0-2.01.5-1.5
Locomotor testing rearing0.00.10.20.5-0.40.3-0.3
Locomotion in novel chamber0.20.20.30.6-0.4-0.40.4
Locomotion in novel chamber post-restriction0.00.10.10.3-0.2-0.20.3
Fecal boli incidents, locomotor time 10.41.11.6-1.31.1-0.90.8
Change in fecal boli incidents, locomotor task0.50.50.60.8-0.70.7-0.6
Time >=10cm from walls, locomotor time 10.00.00.10.2-0.20.0-0.2
Bouts of movement, locomotor time 10.20.30.3-0.50.5-0.60.5
Total resting periods, locomotor time 10.00.00.1-0.30.2-0.20.1
Rest time, locomotor task time 10.00.00.00.1-0.10.1-0.1
Distance moved, locomotor task time 10.00.10.20.4-0.30.2-0.1
Vertical activity count, locomotor time 10.10.50.7-0.50.5-0.80.8
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.10.1-0.2
Bouts of movement, locomotor time 20.00.10.1-0.30.3-0.40.4
Total resting periods, locomotor time 20.00.00.0-0.10.1-0.10.1
Rest time, locomotor task time 20.00.10.10.3-0.30.2-0.2
Distance moved, locomotor task time 20.81.11.3-1.01.0-1.11.1
Vertical activity count, locomotor time 20.51.21.2-1.01.1-1.11.1
Light reinforcement 10.10.50.6-0.70.7-0.80.8
Light reinforcement 21.22.73.7-1.91.8-1.41.3
Bone: marrow area0.20.40.70.2-0.30.8-0.8
Bone: maximum diameter0.20.40.70.4-0.40.8-0.8
Bone: maximum force0.00.00.0-0.20.2-0.20.2
Bone: maximum moment0.00.00.1-0.20.2-0.20.2
Mean time between licks in bursts0.10.81.01.0-1.00.8-0.8
Mean num. licks in bursts0.30.91.9-1.41.2-0.30.3
Cd content in liver0.70.80.90.9-0.90.8-0.9
Co content in liver1.72.02.4-1.51.5-1.31.3
Cu content in liver0.40.50.70.8-0.80.6-0.6
Fe content in liver0.20.20.4-0.60.40.3-0.4
K content in liver0.80.80.90.9-0.90.9-0.8
Mg content in liver0.00.10.10.2-0.20.2-0.2
Mn content in liver0.10.10.20.1-0.1-0.40.4
Na content in liver1.21.32.0-1.41.4-0.80.8
Rb content in liver1.92.23.01.2-1.31.7-1.7
Se content in liver0.10.10.10.2-0.1-0.30.3
Sr content in liver0.10.10.3-0.50.4-0.20.2
Zn content in liver0.91.11.71.3-1.20.8-0.8
Bone: minimum diameter0.40.81.51.2-1.10.6-0.5
Time in familiar zone, hab. session 10.20.20.50.7-0.60.1-0.1
Time in novel zone, hab. session 10.50.60.70.7-0.70.8-0.8
Total zone transitions, hab. session 10.00.00.1-0.30.30.1-0.0
Total locomotion distance, hab. session 10.60.91.1-1.11.0-0.80.8
Locomotion velocity, hab. session 11.52.22.8-1.71.6-1.31.3
Time in familiar zone, hab. session 20.00.00.0-0.0-0.0-0.10.1
Time in novel zone, hab. session 20.50.60.70.8-0.80.7-0.7
Total zone transitions, hab. session 20.30.40.70.3-0.40.8-0.8
Total locomotion distance, hab. session 20.60.81.20.6-0.71.1-1.1
Locomotion velocity, hab. session 20.70.91.40.6-0.71.2-1.2
Novel to familiar place preference ratio0.00.00.10.3-0.20.1-0.1
Novelty place preference0.10.10.20.4-0.30.0-0.0
Time in novel zone, NPP test0.20.20.40.6-0.60.2-0.2
Total zone transitions, NPP test0.20.30.60.1-0.20.8-0.8
Total locomotion distance, NPP test0.10.10.2-0.30.20.5-0.5
Locomotion velocity, NPP test0.10.20.4-0.60.50.2-0.3
Intraocular pressure0.91.42.31.5-1.50.7-0.8
Delta distance traveled before/after self-admin0.10.10.20.4-0.30.4-0.3
Delta ambulatory time before/after self-admin0.10.10.2-0.50.4-0.10.2
Parametrial fat weight12.128.548.87.0-6.43.6-3.4
Pavlov. Cond. lever latency0.00.00.10.00.0-0.20.2
Pavlov. Cond. magazine entry latency0.50.60.80.6-0.70.8-0.9
Pavlov. Cond. change in total contacts0.10.10.3-0.20.2-0.50.4
Pavlov. Cond. index score0.10.10.20.2-0.30.4-0.4
Pavlov. Cond. latency score0.20.30.40.3-0.40.6-0.6
Pavlov. Cond. lever contacts0.00.00.0-0.20.2-0.10.1
Pavlov. Cond. magazine entry number0.50.71.0-0.60.7-0.91.0
Pavlov. Cond. intertrial magazine entries0.30.40.7-0.90.8-0.50.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.0-0.10.3-0.3
Pavlov. Cond. response bias0.10.10.2-0.0-0.10.4-0.5
Pavlov. Cond. lever latency0.30.50.90.9-0.90.2-0.3
Pavlov. Cond. magazine entry latency0.20.30.50.3-0.30.7-0.7
Pavlov. Cond. change in total contacts0.00.00.1-0.30.30.1-0.1
Pavlov. Cond. index score0.20.20.5-0.70.7-0.00.1
Pavlov. Cond. latency score0.20.30.6-0.70.70.00.0
Pavlov. Cond. lever contacts0.20.20.5-0.70.7-0.10.2
Pavlov. Cond. magazine entry number0.50.60.9-0.60.6-0.90.9
Pavlov. Cond. intertrial magazine entries0.10.30.50.2-0.1-0.70.7
Pavlov. Cond. lever-magazine prob. diff.0.10.10.3-0.50.50.1-0.1
Pavlov. Cond. response bias0.10.20.4-0.60.50.1-0.1
Time in closed arm before self-admin0.61.01.10.9-0.91.1-1.0
Time in closed arm after self-admin0.20.30.40.6-0.50.4-0.4
Time in open arm before self-admin0.60.70.9-0.70.7-1.00.9
Time in open arm after self-admin0.00.00.00.1-0.1-0.20.1
Bone: periosteal estimation0.00.10.20.0-0.10.4-0.4
Bone: periosteal perimeter0.30.70.90.7-0.71.0-0.9
Bone: post-yield work0.10.20.5-0.70.60.3-0.3
Progressive ratio test 1 active lever presses1.01.81.8-1.31.4-1.31.3
Progressive ratio test 1 breakpoint0.91.51.7-1.31.3-1.21.2
Progressive ratio test 1 inactive lever presses0.20.40.7-0.70.8-0.50.6
Progressive ratio test 2 active lever presses4.46.26.5-2.62.5-2.52.4
Progressive ratio test 2 breakpoint5.46.97.0-2.62.6-2.62.6
Progressive ratio test 2 inactive lever presses1.13.34.1-2.02.0-1.61.6
Incentive Sensitization - Responses2.26.16.6-2.52.4-2.62.5
Incentive Sensitization - Breakpoint3.06.87.5-2.52.5-2.72.7
Sum of active levers in priming session hrs 5-60.20.20.30.3-0.40.5-0.5
Progressive ratio0.51.51.61.2-1.21.3-1.3
Food seeking constrained by brief footshock1.51.93.6-1.91.7-0.80.7
Seeking ratio, punishment vs. effort0.81.82.7-1.61.5-1.01.0
Retroperitoneal fat weight15.468.7114.610.7-9.85.8-5.5
Reaction time number correct0.00.10.3-0.50.5-0.20.2
Reaction time mean minus median0.21.01.91.4-1.40.4-0.5
Reaction time mean minus median AUC0.21.22.11.4-1.40.5-0.6
Reaction time num false alarms3.15.25.72.4-2.42.2-2.2
Reaction time num false alarms AUC2.04.65.52.4-2.32.0-1.9
Reaction time trials correct on left0.00.10.3-0.50.5-0.20.2
Reaction time trials on left0.00.10.2-0.40.4-0.20.2
Reaction time mean0.10.20.40.6-0.6-0.40.3
Reaction time mean AUC0.10.20.30.5-0.5-0.40.3
Median of all reaction times0.10.20.50.1-0.1-0.70.6
Reaction time omissions2.33.85.52.3-2.31.4-1.5
Reaction time false alarm rate2.53.44.52.1-2.01.6-1.6
Reaction time premature initiation rate0.00.10.1-0.20.20.3-0.3
Reaction time premature initiations0.00.10.3-0.50.50.2-0.2
Std. dev. reaction times0.41.52.61.6-1.60.6-0.7
Reaction time trials completed0.00.10.2-0.40.4-0.20.2
Reaction time trials AUC0.00.10.2-0.40.4-0.30.3
Run reversals in cocaine runway, females0.20.20.5-0.70.60.1-0.1
Run reversals in cocaine runway, males1.11.31.5-1.21.2-1.01.1
Latency to leave start box in cocaine runway1.82.43.90.9-1.21.9-2.0
Latency to leave start box in cocaine runway, F2.02.53.71.0-1.21.9-1.9
Latency to leave start box in cocaine runway, M0.40.40.80.2-0.40.8-0.9
Std. dev. time between licks in bursts0.20.40.50.7-0.70.6-0.6
Total sessions with >9 infusions3.84.75.1-2.12.1-2.32.2
Short access day 1 total inactive lever presses1.02.02.9-1.71.7-1.11.1
Short access day 10 total inactive lever presses0.42.53.41.3-1.41.8-1.8
Short access day 1 total infusions0.71.31.4-1.21.2-1.21.1
Short access day 10 total infusions1.52.52.8-1.71.7-1.51.4
Short access total infusions1.62.32.4-1.51.5-1.51.5
Short access day 1 locomotion1.11.82.1-1.21.2-1.51.4
Short access day 10 total locomotion0.52.22.6-1.41.4-1.61.5
Short access total locomotion3.04.55.5-1.91.9-2.32.3
One hour access (0.3 mA shock)3.34.05.4-2.32.1-1.81.7
Compulsive drug intake0.30.40.50.7-0.70.5-0.6
One hour access (shock baseline)2.15.66.8-2.62.5-2.22.1
Social response proportion0.81.01.2-0.90.9-1.11.1
Social responses0.20.20.30.6-0.50.3-0.3
Social time0.60.91.5-0.50.6-1.21.2
Soleus weight0.82.54.9-2.21.9-0.80.7
Bone: stiffness0.00.00.0-0.10.2-0.10.2
Tibialis anterior weight0.20.81.4-1.21.0-0.60.6
Time to tail flick, vehicle, before self-admin0.10.10.20.2-0.1-0.50.5
Time to tail flick, vehicle, after self-admin2.14.36.02.5-2.41.7-1.7
Time to tail flick, test, before self-admin1.92.12.2-1.51.4-1.51.5
Time to tail flick, test, after self-admin0.80.91.1-1.00.9-0.90.9
Delta time to tail flick, vehicle, before/after SA2.22.42.41.5-1.61.5-1.5
Delta time to tail flick, test, before/after SA0.10.10.3-0.60.4-0.10.1
Tibia length0.10.20.40.10.1-0.60.6
Ambulatory time before self-admin0.00.00.00.1-0.1-0.00.0
Ambulatory time after self-admin0.00.00.1-0.20.20.00.0
Bone: tissue strength0.40.50.8-0.20.3-0.90.9
Total heroin consumption2.63.04.2-2.11.9-1.51.4
Bone: trabecular number0.10.20.3-0.50.30.4-0.5
Bone: trabecular spacing0.40.61.1-0.20.4-1.01.0
Bone: trabecular thickness0.81.11.50.8-0.91.2-1.2
Bone: trabecular tissue density0.10.10.20.0-0.00.4-0.4
Water consumed over 24 hours0.51.01.10.9-1.01.0-1.1
Number of responses in last shaping day0.00.00.1-0.30.20.1-0.1