Arhgap45

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose isoform ratio XM_017594813.2 0.03 0.03 1.2e-03 0.02 0.02 0.01 0.01 2.3e-03 5.3e-03 7.2e-03 8.0e-03
2 Brain mRNA stability Arhgap45 0.04 0.03 3.4e-03 0.01 0.01 0.01 0.01 1.5e-02 4.9e-02 4.4e-02 6.2e-02
3 BLA gene expression Arhgap45 0.09 0.06 2.4e-04 0.07 0.05 0.04 0.06 1.9e-04 7.7e-04 1.9e-03 4.7e-04
4 Liver isoform ratio XM_039078978.1 0.03 0.03 5.1e-03 0.01 0.02 0.02 0.02 4.3e-02 2.0e-03 1.7e-03 2.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.43.7-1.00.70.71.9
Area under the delay curve2.32.43.0-1.61.61.71.2
BMI with tail5.618.021.0-4.54.64.53.2
BMI without tail1.32.73.8-1.81.81.90.8
Body weight0.93.94.6-2.12.12.21.6
Weight adjusted by age0.20.20.4-0.50.50.3-0.6
Bone surface0.71.34.8-0.50.30.32.2
Bone volume0.81.34.6-0.60.40.32.1
Breakpoint value in progressive ratio session5.86.47.02.7-2.6-2.5-2.3
Number of licking bursts0.10.10.50.10.0-0.2-0.7
Context. condit. distance diff. score0.10.10.4-0.00.00.60.2
Locomotion velocity, session 10.10.10.20.3-0.4-0.50.3
Locomotion distance, session 10.50.62.20.3-0.30.21.5
Locomotion velocity, session 22.42.84.52.1-2.0-1.6-0.2
Locomotion distance, session 20.50.70.90.8-0.8-1.00.8
Locomotion velocity, session 36.98.09.93.1-2.9-2.8-2.5
Locomotion distance, session 30.00.10.10.3-0.10.0-0.3
Stereotopy head waving bouts, day 34.45.17.52.7-2.4-2.3-1.4
Stereotopy head waving duration, day 35.56.68.62.9-2.7-2.6-1.8
Locomotion velocity, session 71.01.11.81.4-1.0-0.8-1.0
Locomotion distance, session 70.10.10.40.00.10.1-0.6
Stereotopy head waving bouts, day 70.10.10.50.1-0.00.20.7
Stereotopy head waving duration, day 70.10.10.30.3-0.2-0.10.6
Locomotion velocity, session 80.40.50.91.0-0.5-0.40.8
Locomotion distance, session 80.20.20.40.6-0.6-0.20.4
Degree of sensitization distance0.30.30.4-0.50.50.60.5
Degree of sensitization stereotypy2.32.52.7-1.61.51.71.6
Conditioned locomotion0.70.81.2-1.01.11.0-0.0
Cocaine response after cond. corrected3.03.45.1-2.32.02.10.5
Cocaine response after cond. not corrected3.03.44.9-2.22.02.10.5
Cocaine response before conditioning0.50.50.91.0-0.8-0.7-0.4
Saline control response0.00.00.1-0.20.30.20.1
Bone: connectivity density1.01.63.2-1.11.01.01.8
Bone: cortical apparent density1.01.31.9-1.41.31.00.7
Bone: cortical area1.01.42.2-1.01.11.21.5
Bone: cortical porosity0.20.20.40.5-0.5-0.60.1
Bone: cortical porosity0.20.31.0-0.10.20.11.0
Bone: cortical thickness1.52.42.5-1.51.61.51.5
Bone: cortical thickness0.20.31.00.1-0.2-0.3-1.0
Bone: cortical tissue density0.70.91.4-1.21.10.80.5
Condit. Reinf. active minus inactive responses4.45.06.12.5-2.5-2.2-1.7
Condit. Reinf. active-inactive response ratio2.62.83.11.5-1.8-1.7-1.8
Condit. Reinf. active responses2.83.54.72.2-2.2-1.9-0.9
Condit. Reinf. inactive responses0.40.40.60.8-0.7-0.60.4
Incentive salience index mean1.92.23.41.8-1.8-1.4-0.6
Condit. Reinf. lever presses0.50.72.5-0.20.20.31.6
Condit. Reinf. active minus inactive responses2.73.34.81.6-1.5-1.9-2.2
Condit. Reinf. active-inactive response ratio0.40.41.3-0.1-0.0-0.6-1.1
Condit. Reinf. active responses2.23.13.81.7-1.5-1.8-2.0
Condit. Reinf. inactive responses1.21.52.21.5-1.2-1.1-1.1
Condit. Reinf. lever presses2.73.64.31.7-1.8-2.0-2.1
Condit. Reinf. lever reinforcers received1.92.74.21.5-1.3-1.7-2.0
Conditioned reinforcement - actives1.61.62.01.4-1.4-1.3-1.0
Conditioned reinforcement - inactives0.30.30.6-0.50.50.8-0.1
Conditioned locomotion5.97.18.32.8-2.9-2.8-2.2
Patch foraging indifference point 0 sec0.20.40.5-0.60.70.50.6
Patch foraging indifference point AUC0.70.81.10.8-0.9-1.0-0.8
Delay disc. indifference point, 0s delay10.111.013.3-3.23.23.23.7
Delay disc. indifference point, 16s delay0.20.20.4-0.40.40.60.2
Delay disc. indifference point, 2s delay6.16.87.9-2.62.62.82.4
Delay disc. indifference point, 24s delay0.70.60.9-1.00.90.80.3
Delay disc. indifference point, 4s delay1.21.21.9-1.01.01.40.9
Delay disc. indifference point, 8s delay0.70.81.1-1.01.00.90.4
Indifference point function ln k0.10.20.3-0.50.50.60.1
Indifference point function log k0.10.20.3-0.50.50.60.1
Patch foraging total patch changes 0 sec0.10.20.3-0.40.60.40.4
Patch foraging total patch changes 12 sec0.10.20.3-0.50.40.40.1
Patch foraging total patch changes 18 sec1.01.31.61.2-1.2-1.3-0.9
Patch foraging total patch changes 24 sec0.00.00.10.0-0.1-0.3-0.0
Patch foraging total patch changes 6 sec0.10.10.40.3-0.2-0.6-0.2
Patch foraging time to switch 0 sec2.03.16.2-1.31.21.72.5
Patch foraging water rate 0 sec0.50.72.50.5-0.2-0.5-1.6
Patch foraging water rate 12 sec0.50.71.0-1.01.00.7-0.6
Patch foraging water rate 18 sec1.52.06.30.7-0.7-1.0-2.5
Patch foraging water rate 24 sec0.60.83.0-0.10.2-0.1-1.7
Patch foraging water rate 6 sec1.11.64.00.7-0.8-1.1-2.0
Seeking ratio, delayed vs. immediate footshock3.43.94.82.2-2.1-2.2-1.4
Distance traveled before self-admin0.90.91.2-1.00.90.91.1
Distance traveled after self-admin0.30.30.50.6-0.7-0.7-0.2
Extensor digitorum longus weight3.112.217.1-3.63.84.12.2
Bone: elastic displacement0.10.10.20.0-0.4-0.5-0.3
Bone: elastic work0.40.50.8-0.90.50.60.7
Bone: endosteal estimation0.20.40.7-0.40.40.80.8
Bone: endosteal perimeter0.10.30.50.7-0.7-0.40.0
Epididymis fat weight0.30.80.90.9-0.9-0.8-1.0
Delta time in closed arm before/after self-admin0.40.41.1-0.50.40.4-1.0
Delta time in open arm before/after self-admin1.41.31.5-1.21.11.01.2
Diff in mean of infusions in LGA sessions2.02.22.71.6-1.6-1.5-1.2
Delay discount exponential model param2.02.12.81.5-1.5-1.7-1.0
Extinction: sum of active levers before priming1.71.61.81.3-1.3-1.2-1.3
Active lever presses in extinction session 61.91.82.51.4-1.5-1.6-0.9
Bone: final force1.62.53.3-1.41.51.61.8
Bone: final moment1.32.12.7-1.31.31.51.6
Food consumed during 24 hour testing period0.40.40.6-0.80.70.70.4
Glucose1.42.23.3-1.61.81.40.9
Heart weight0.40.61.50.4-0.5-0.8-1.2
Delay discount hyperbolic model param2.93.13.91.8-1.8-2.0-1.3
Intermittent access intake day 1-15 change6.96.87.62.8-2.6-2.7-2.4
Intermittent access intake escalation7.87.78.22.8-2.7-2.7-2.9
Intermittent access intake escalation 29.39.29.82.9-2.9-3.1-3.1
Intermitt. access day 1 inactive lever presses0.40.41.10.4-0.5-0.5-1.1
Intermitt. access day 15 inactive lever presses0.70.81.10.9-0.8-0.8-1.0
Intermitt. access escalation Index0.70.61.3-0.60.60.61.1
Intermittent access day 1 total infusions0.10.10.1-0.40.20.40.2
Intermittent access day 15 total infusions2.32.63.01.6-1.6-1.5-1.7
Intermittent access terminal intake (last 3 days)1.01.11.21.1-1.1-1.0-1.1
Intermittent access total infusions0.20.30.50.5-0.5-0.4-0.7
Intermittent access day 1 locomotion0.50.50.60.7-0.8-0.6-0.8
Intermittent access day 15 total locomotion3.63.84.32.1-2.1-1.9-1.8
Intermittent access total locomotion0.70.81.11.0-1.0-0.8-0.8
Intermittent access standard deviation3.23.44.01.8-1.8-1.7-2.0
Left kidney weight0.00.10.30.1-0.2-0.00.6
Right kidney weight1.23.44.91.9-2.2-1.9-1.2
Cocaine induced anxiety0.20.20.20.4-0.4-0.40.5
Post-drug Anxiety0.20.20.20.5-0.5-0.50.4
Baseline Anxiety0.60.61.10.6-0.6-0.6-1.1
Tail length3.410.412.23.4-3.5-3.2-2.8
Length with tail1.65.77.32.6-2.7-2.5-1.6
Length without tail0.10.10.50.2-0.0-0.00.7
Times rat made contact with spout0.10.10.1-0.20.40.3-0.4
Lifetime Intake0.10.10.10.3-0.3-0.1-0.4
Liver weight, left1.62.63.4-1.71.71.81.1
Liver weight, right1.52.43.1-1.41.41.81.6
Locomotor activity1.72.83.81.9-1.8-2.0-0.6
Locomotor testing distance1.11.92.71.4-1.5-1.6-0.7
Locomotor testing rearing0.10.20.50.2-0.2-0.3-0.7
Locomotion in novel chamber0.20.30.50.5-0.4-0.6-0.7
Locomotion in novel chamber post-restriction1.31.51.91.4-1.3-1.0-1.2
Fecal boli incidents, locomotor time 11.21.32.0-1.21.21.40.7
Change in fecal boli incidents, locomotor task0.10.10.10.4-0.1-0.30.0
Time >=10cm from walls, locomotor time 11.51.52.5-1.21.20.91.6
Bouts of movement, locomotor time 10.40.40.90.9-0.6-0.4-0.5
Total resting periods, locomotor time 10.40.50.90.9-0.7-0.4-0.5
Rest time, locomotor task time 10.50.51.31.2-0.8-0.2-0.1
Distance moved, locomotor task time 11.41.52.1-1.51.20.81.3
Vertical activity count, locomotor time 10.40.41.0-1.00.70.1-0.4
Time >=10cm from walls, locomotor time 21.11.11.6-1.21.30.90.7
Bouts of movement, locomotor time 20.20.20.30.5-0.6-0.50.3
Total resting periods, locomotor time 20.20.20.30.4-0.5-0.40.4
Rest time, locomotor task time 20.30.40.60.8-0.8-0.5-0.2
Distance moved, locomotor task time 20.40.50.7-0.80.80.70.4
Vertical activity count, locomotor time 20.30.40.6-0.80.60.6-0.3
Light reinforcement 14.68.310.43.0-3.2-3.2-2.0
Light reinforcement 21.41.92.41.4-1.4-1.6-1.0
Bone: marrow area0.20.40.7-0.40.40.80.8
Bone: maximum diameter0.30.60.91.0-0.9-0.80.0
Bone: maximum force1.32.32.7-1.31.41.61.6
Bone: maximum moment1.11.92.2-1.31.31.51.4
Mean time between licks in bursts4.05.66.52.5-2.2-2.6-2.2
Mean num. licks in bursts0.00.00.1-0.20.10.30.2
Cd content in liver0.40.50.9-0.70.90.50.6
Co content in liver0.60.70.91.0-0.9-0.8-0.7
Cu content in liver0.50.61.5-0.40.50.61.2
Fe content in liver0.30.30.60.8-0.5-0.3-0.6
K content in liver0.50.51.60.30.30.31.3
Mg content in liver0.50.51.70.00.40.31.3
Mn content in liver0.60.61.01.0-0.7-0.50.9
Na content in liver1.31.42.7-0.71.01.21.7
Rb content in liver1.01.32.8-0.81.00.91.7
Se content in liver0.40.50.91.0-0.9-0.4-0.1
Sr content in liver0.40.31.20.2-0.3-0.3-1.1
Zn content in liver3.13.45.41.5-1.7-1.7-2.3
Bone: minimum diameter0.10.10.30.20.00.30.6
Time in familiar zone, hab. session 13.12.93.31.5-1.8-1.7-1.8
Time in novel zone, hab. session 11.91.82.3-1.21.41.31.5
Total zone transitions, hab. session 10.40.50.91.0-0.7-0.80.4
Total locomotion distance, hab. session 10.60.81.41.2-0.9-0.70.8
Locomotion velocity, hab. session 10.91.22.21.5-1.2-1.10.5
Time in familiar zone, hab. session 27.57.88.62.6-2.9-2.8-2.8
Time in novel zone, hab. session 25.85.86.2-2.32.52.42.4
Total zone transitions, hab. session 21.11.44.1-0.60.80.82.0
Total locomotion distance, hab. session 20.50.60.80.9-0.9-0.80.4
Locomotion velocity, hab. session 20.40.60.70.8-0.8-0.70.8
Novel to familiar place preference ratio5.96.17.1-2.42.52.42.7
Novelty place preference3.93.95.0-1.91.91.92.2
Time in novel zone, NPP test4.04.15.0-1.92.02.02.2
Total zone transitions, NPP test0.30.51.6-0.30.40.21.3
Total locomotion distance, NPP test0.40.51.8-0.20.40.41.3
Locomotion velocity, NPP test0.20.31.30.00.10.11.1
Intraocular pressure0.40.62.10.0-0.3-0.5-1.4
Delta distance traveled before/after self-admin1.71.82.21.5-1.4-1.5-1.0
Delta ambulatory time before/after self-admin1.71.92.41.5-1.5-1.4-0.9
Parametrial fat weight0.50.91.30.9-1.1-0.9-0.9
Pavlov. Cond. lever latency0.20.31.1-0.30.1-0.3-1.0
Pavlov. Cond. magazine entry latency3.84.96.42.5-2.4-2.0-1.7
Pavlov. Cond. change in total contacts0.20.30.60.8-0.6-0.2-0.1
Pavlov. Cond. index score0.60.81.61.3-1.1-0.6-0.0
Pavlov. Cond. latency score0.50.71.41.2-1.0-0.50.3
Pavlov. Cond. lever contacts0.30.31.10.5-0.20.11.0
Pavlov. Cond. magazine entry number1.11.42.1-1.41.31.00.9
Pavlov. Cond. intertrial magazine entries0.40.51.30.3-0.4-0.5-1.1
Pavlov. Cond. lever-magazine prob. diff.1.01.22.21.5-1.4-0.9-0.3
Pavlov. Cond. response bias1.51.92.91.7-1.5-1.2-0.9
Pavlov. Cond. lever latency0.60.81.1-0.80.81.11.0
Pavlov. Cond. magazine entry latency0.50.60.70.9-0.8-0.7-0.6
Pavlov. Cond. change in total contacts0.60.81.30.7-0.7-1.1-1.1
Pavlov. Cond. index score0.81.01.21.0-0.9-1.1-1.1
Pavlov. Cond. latency score0.60.81.00.8-0.8-1.0-0.9
Pavlov. Cond. lever contacts0.81.11.60.9-0.9-1.1-1.3
Pavlov. Cond. magazine entry number0.70.91.2-1.11.00.90.7
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.40.50.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.71.01.11.0-0.9-1.1-0.9
Pavlov. Cond. response bias1.92.63.21.5-1.5-1.7-1.8
Time in closed arm before self-admin1.61.83.5-1.01.11.21.9
Time in closed arm after self-admin0.00.00.10.2-0.2-0.2-0.2
Time in open arm before self-admin0.70.81.00.8-0.9-0.8-1.0
Time in open arm after self-admin0.70.70.9-1.00.90.90.6
Bone: periosteal estimation0.51.12.1-0.70.81.11.5
Bone: periosteal perimeter0.10.10.50.2-0.10.10.7
Bone: post-yield work0.20.30.7-0.30.60.90.4
Progressive ratio test 1 active lever presses0.10.10.20.00.00.3-0.4
Progressive ratio test 1 breakpoint0.10.10.1-0.00.10.4-0.3
Progressive ratio test 1 inactive lever presses0.00.00.00.2-0.20.1-0.1
Progressive ratio test 2 active lever presses0.40.40.90.5-0.5-0.4-1.0
Progressive ratio test 2 breakpoint0.30.30.50.5-0.5-0.4-0.7
Progressive ratio test 2 inactive lever presses0.00.00.00.1-0.10.00.0
Incentive Sensitization - Responses0.30.30.60.3-0.4-0.4-0.8
Incentive Sensitization - Breakpoint0.30.30.60.4-0.5-0.5-0.8
Sum of active levers in priming session hrs 5-60.00.00.1-0.10.00.10.2
Progressive ratio0.00.10.1-0.10.00.30.3
Food seeking constrained by brief footshock0.30.40.80.8-0.9-0.30.2
Seeking ratio, punishment vs. effort0.10.10.20.4-0.5-0.30.0
Retroperitoneal fat weight0.10.40.7-0.70.50.90.5
Reaction time number correct0.20.30.6-0.40.50.5-0.8
Reaction time mean minus median0.71.01.11.0-0.9-1.0-1.1
Reaction time mean minus median AUC0.10.10.5-0.00.10.20.7
Reaction time num false alarms0.10.20.80.00.20.1-0.9
Reaction time num false alarms AUC0.20.31.00.00.20.1-1.0
Reaction time trials correct on left0.20.30.6-0.40.50.5-0.8
Reaction time trials on left0.20.30.5-0.40.50.5-0.7
Reaction time mean0.10.10.2-0.30.30.20.4
Reaction time mean AUC0.10.20.3-0.50.40.30.5
Median of all reaction times0.50.70.8-0.90.80.70.9
Reaction time omissions0.10.10.20.1-0.3-0.4-0.1
Reaction time false alarm rate0.00.00.0-0.00.20.1-0.1
Reaction time premature initiation rate1.31.72.31.1-1.2-1.4-1.5
Reaction time premature initiations1.41.94.21.0-1.0-1.3-2.0
Std. dev. reaction times0.10.20.20.4-0.3-0.5-0.4
Reaction time trials completed0.20.30.5-0.40.50.5-0.7
Reaction time trials AUC0.20.30.9-0.30.40.4-1.0
Run reversals in cocaine runway, females0.30.30.60.7-0.8-0.5-0.2
Run reversals in cocaine runway, males1.11.01.51.1-1.2-1.0-0.7
Latency to leave start box in cocaine runway0.10.10.40.2-0.0-0.60.3
Latency to leave start box in cocaine runway, F1.11.22.4-1.01.10.51.6
Latency to leave start box in cocaine runway, M4.03.84.32.0-1.8-1.9-2.1
Std. dev. time between licks in bursts0.40.50.80.9-0.6-0.8-0.3
Total sessions with >9 infusions0.10.10.3-0.20.30.40.5
Short access day 1 total inactive lever presses0.00.00.10.3-0.30.0-0.1
Short access day 10 total inactive lever presses0.00.00.0-0.00.0-0.1-0.2
Short access day 1 total infusions0.10.10.10.3-0.20.00.4
Short access day 10 total infusions0.20.20.50.4-0.40.0-0.7
Short access total infusions0.00.00.1-0.00.10.20.2
Short access day 1 locomotion0.50.50.80.9-0.9-0.6-0.3
Short access day 10 total locomotion3.84.34.72.2-2.1-2.0-2.0
Short access total locomotion0.50.60.80.9-0.8-0.6-0.5
One hour access (0.3 mA shock)0.10.10.4-0.30.30.60.1
Compulsive drug intake1.91.92.5-1.31.41.31.6
One hour access (shock baseline)0.40.51.20.6-0.6-0.2-1.1
Social response proportion0.30.30.50.7-0.5-0.70.1
Social responses4.96.37.82.8-2.8-2.8-1.5
Social time0.81.01.1-1.11.00.91.0
Soleus weight7.923.227.1-5.15.05.23.8
Bone: stiffness2.84.55.4-1.82.22.32.1
Tibialis anterior weight0.93.14.5-1.61.82.11.5
Time to tail flick, vehicle, before self-admin0.20.20.20.4-0.4-0.50.3
Time to tail flick, vehicle, after self-admin0.70.71.40.6-0.7-0.8-1.2
Time to tail flick, test, before self-admin0.10.10.30.2-0.2-0.10.5
Time to tail flick, test, after self-admin0.20.20.40.5-0.5-0.6-0.1
Delta time to tail flick, vehicle, before/after SA0.10.10.5-0.10.20.2-0.7
Delta time to tail flick, test, before/after SA0.60.61.20.7-0.6-0.6-1.1
Tibia length0.92.62.91.6-1.7-1.7-1.4
Ambulatory time before self-admin0.70.80.9-0.90.80.80.9
Ambulatory time after self-admin0.10.20.30.4-0.5-0.4-0.0
Bone: tissue strength2.22.12.3-1.51.51.41.5
Total heroin consumption1.71.92.31.5-1.5-1.5-1.0
Bone: trabecular number0.20.30.50.6-0.7-0.50.3
Bone: trabecular spacing0.30.41.7-0.10.20.1-1.3
Bone: trabecular thickness1.92.26.3-1.10.90.72.5
Bone: trabecular tissue density1.01.51.8-1.11.31.41.0
Water consumed over 24 hours0.81.01.2-0.91.01.01.1
Number of responses in last shaping day0.10.10.20.3-0.4-0.1-0.4