Aqp5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Aqp5 0.1 0.06 7.1e-06 0.09 0.1 0.09 0.09 9.0e-05 5.4e-05 1.2e-04 8.8e-05
2 Brain gene expression Aqp5 0.04 0.04 3.4e-03 0.02 0.01 0.01 0.01 9.9e-03 1.7e-02 2.7e-02 1.4e-02
3 NAcc gene expression Aqp5 0.12 0.08 4.4e-16 0.15 0.14 0.13 0.14 6.7e-17 1.0e-15 2.9e-15 6.5e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density7.612.714.9-3.93.43.4
Area under the delay curve1.01.11.2-1.11.01.0
BMI with tail4.313.915.4-3.93.63.6
BMI without tail0.20.30.4-0.40.60.6
Body weight4.820.323.6-4.94.34.3
Weight adjusted by age0.30.40.7-0.90.40.4
Bone surface10.218.020.2-4.54.14.1
Bone volume9.215.716.8-4.13.93.9
Breakpoint value in progressive ratio session0.10.10.1-0.30.20.2
Number of licking bursts1.31.51.51.2-1.2-1.2
Context. condit. distance diff. score0.20.20.2-0.50.40.4
Locomotion velocity, session 13.84.14.41.9-2.1-2.1
Locomotion distance, session 12.93.73.82.0-1.9-1.9
Locomotion velocity, session 20.30.30.30.6-0.6-0.6
Locomotion distance, session 23.14.34.32.1-2.1-2.1
Locomotion velocity, session 34.75.55.92.4-2.3-2.3
Locomotion distance, session 33.23.54.42.1-1.8-1.8
Stereotopy head waving bouts, day 30.00.00.1-0.40.10.1
Stereotopy head waving duration, day 30.00.00.0-0.1-0.2-0.2
Locomotion velocity, session 72.83.03.31.5-1.8-1.8
Locomotion distance, session 74.15.35.42.2-2.3-2.3
Stereotopy head waving bouts, day 70.60.70.7-0.80.90.9
Stereotopy head waving duration, day 71.31.51.5-1.21.21.2
Locomotion velocity, session 80.30.40.40.5-0.7-0.7
Locomotion distance, session 81.21.81.91.4-1.3-1.3
Degree of sensitization distance0.00.00.0-0.2-0.0-0.0
Degree of sensitization stereotypy0.70.80.9-0.71.01.0
Conditioned locomotion0.00.00.00.0-0.1-0.1
Cocaine response after cond. corrected0.00.00.0-0.00.10.1
Cocaine response after cond. not corrected0.20.20.30.6-0.4-0.4
Cocaine response before conditioning2.22.73.21.8-1.5-1.5
Saline control response0.00.00.0-0.1-0.1-0.1
Bone: connectivity density4.16.58.2-2.92.42.4
Bone: cortical apparent density0.20.20.30.5-0.5-0.5
Bone: cortical area6.19.211.0-3.32.92.9
Bone: cortical porosity0.00.00.00.10.20.2
Bone: cortical porosity0.00.00.10.4-0.0-0.0
Bone: cortical thickness1.62.73.3-1.81.51.5
Bone: cortical thickness0.30.30.40.4-0.6-0.6
Bone: cortical tissue density0.30.40.40.6-0.6-0.6
Condit. Reinf. active minus inactive responses0.10.10.10.3-0.3-0.3
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.30.3
Condit. Reinf. active responses0.80.91.01.0-1.0-1.0
Condit. Reinf. inactive responses2.83.33.61.9-1.8-1.8
Incentive salience index mean0.00.00.0-0.0-0.0-0.0
Condit. Reinf. lever presses0.40.50.6-0.70.80.8
Condit. Reinf. active minus inactive responses0.91.11.3-0.81.21.2
Condit. Reinf. active-inactive response ratio0.80.81.1-0.51.01.0
Condit. Reinf. active responses0.10.10.2-0.10.40.4
Condit. Reinf. inactive responses0.81.01.01.0-1.0-1.0
Condit. Reinf. lever presses0.00.00.0-0.00.00.0
Condit. Reinf. lever reinforcers received0.00.00.10.3-0.0-0.0
Conditioned reinforcement - actives1.21.21.41.2-1.0-1.0
Conditioned reinforcement - inactives1.92.22.61.6-1.4-1.4
Conditioned locomotion0.10.20.20.5-0.4-0.4
Patch foraging indifference point 0 sec6.410.311.03.0-3.3-3.3
Patch foraging indifference point AUC0.10.10.30.5-0.3-0.3
Delay disc. indifference point, 0s delay2.32.52.6-1.51.61.6
Delay disc. indifference point, 16s delay0.90.91.0-1.00.90.9
Delay disc. indifference point, 2s delay1.92.12.2-1.51.41.4
Delay disc. indifference point, 24s delay0.60.60.8-0.90.70.7
Delay disc. indifference point, 4s delay1.21.21.4-1.01.21.2
Delay disc. indifference point, 8s delay1.31.31.9-1.41.01.0
Indifference point function ln k4.56.37.3-2.72.42.4
Indifference point function log k4.56.37.3-2.72.42.4
Patch foraging total patch changes 0 sec6.09.610.22.9-3.2-3.2
Patch foraging total patch changes 12 sec6.07.88.12.7-2.8-2.8
Patch foraging total patch changes 18 sec7.49.49.53.1-3.1-3.1
Patch foraging total patch changes 24 sec4.75.75.82.3-2.4-2.4
Patch foraging total patch changes 6 sec6.710.010.23.1-3.2-3.2
Patch foraging time to switch 0 sec2.43.84.02.0-1.9-1.9
Patch foraging water rate 0 sec3.25.15.3-2.32.22.2
Patch foraging water rate 12 sec2.84.34.8-2.22.02.0
Patch foraging water rate 18 sec0.40.50.5-0.70.70.7
Patch foraging water rate 24 sec4.96.86.9-2.62.62.6
Patch foraging water rate 6 sec5.47.87.9-2.82.82.8
Seeking ratio, delayed vs. immediate footshock0.70.80.8-0.80.90.9
Distance traveled before self-admin2.32.52.51.6-1.6-1.6
Distance traveled after self-admin0.50.50.50.7-0.7-0.7
Extensor digitorum longus weight4.818.819.4-4.44.34.3
Bone: elastic displacement6.37.17.22.6-2.7-2.7
Bone: elastic work0.00.00.0-0.1-0.0-0.0
Bone: endosteal estimation7.516.318.0-4.23.93.9
Bone: endosteal perimeter6.914.415.4-3.93.73.7
Epididymis fat weight0.00.00.1-0.30.00.0
Delta time in closed arm before/after self-admin0.10.10.1-0.40.20.2
Delta time in open arm before/after self-admin3.53.44.02.0-1.8-1.8
Diff in mean of infusions in LGA sessions1.11.21.7-1.31.01.0
Delay discount exponential model param1.01.11.21.1-1.0-1.0
Extinction: sum of active levers before priming0.70.70.7-0.80.80.8
Active lever presses in extinction session 60.10.10.1-0.40.30.3
Bone: final force10.817.519.0-4.44.14.1
Bone: final moment12.319.921.4-4.64.44.4
Food consumed during 24 hour testing period1.41.72.0-1.41.31.3
Glucose0.30.40.50.5-0.7-0.7
Heart weight0.00.10.1-0.30.20.2
Delay discount hyperbolic model param1.11.21.31.1-1.1-1.1
Intermittent access intake day 1-15 change0.20.20.50.7-0.3-0.3
Intermittent access intake escalation0.00.00.10.40.00.0
Intermittent access intake escalation 20.20.20.40.6-0.2-0.2
Intermitt. access day 1 inactive lever presses0.30.40.70.8-0.5-0.5
Intermitt. access day 15 inactive lever presses0.10.10.30.5-0.2-0.2
Intermitt. access escalation Index0.90.80.80.8-0.9-0.9
Intermittent access day 1 total infusions1.31.51.61.3-1.2-1.2
Intermittent access day 15 total infusions1.82.02.61.6-1.3-1.3
Intermittent access terminal intake (last 3 days)1.82.02.61.6-1.3-1.3
Intermittent access total infusions1.71.92.51.6-1.3-1.3
Intermittent access day 1 locomotion1.51.61.61.2-1.3-1.3
Intermittent access day 15 total locomotion1.31.41.61.3-1.1-1.1
Intermittent access total locomotion4.04.64.82.2-2.1-2.1
Intermittent access standard deviation0.00.00.00.20.10.1
Left kidney weight0.92.52.7-1.51.61.6
Right kidney weight2.05.76.6-2.62.32.3
Cocaine induced anxiety0.80.91.1-1.10.90.9
Post-drug Anxiety5.15.76.1-2.52.32.3
Baseline Anxiety0.80.91.0-1.00.90.9
Tail length0.00.10.10.4-0.2-0.2
Length with tail1.65.76.6-2.62.32.3
Length without tail4.910.613.1-3.63.13.1
Times rat made contact with spout0.00.00.00.2-0.1-0.1
Lifetime Intake2.52.83.31.8-1.6-1.6
Liver weight, left1.62.52.8-1.71.51.5
Liver weight, right1.42.42.6-1.61.51.5
Locomotor activity1.42.22.21.5-1.5-1.5
Locomotor testing distance3.66.06.22.5-2.4-2.4
Locomotor testing rearing2.43.74.02.0-1.9-1.9
Locomotion in novel chamber2.53.13.3-1.61.81.8
Locomotion in novel chamber post-restriction0.50.60.7-0.60.80.8
Fecal boli incidents, locomotor time 11.31.41.81.3-1.1-1.1
Change in fecal boli incidents, locomotor task0.40.40.6-0.80.50.5
Time >=10cm from walls, locomotor time 10.30.30.40.4-0.6-0.6
Bouts of movement, locomotor time 10.00.00.0-0.1-0.0-0.0
Total resting periods, locomotor time 10.40.40.50.6-0.7-0.7
Rest time, locomotor task time 10.80.90.90.9-1.0-1.0
Distance moved, locomotor task time 10.00.00.0-0.00.10.1
Vertical activity count, locomotor time 11.21.21.3-1.11.11.1
Time >=10cm from walls, locomotor time 20.40.40.50.7-0.5-0.5
Bouts of movement, locomotor time 23.43.73.7-1.91.91.9
Total resting periods, locomotor time 23.94.24.2-2.02.12.1
Rest time, locomotor task time 20.10.10.10.2-0.3-0.3
Distance moved, locomotor task time 20.00.00.00.2-0.2-0.2
Vertical activity count, locomotor time 20.20.20.2-0.20.50.5
Light reinforcement 10.91.62.61.6-1.1-1.1
Light reinforcement 20.10.10.10.20.30.3
Bone: marrow area7.015.217.0-4.13.83.8
Bone: maximum diameter1.63.03.8-2.01.61.6
Bone: maximum force14.324.727.6-5.34.84.8
Bone: maximum moment16.127.730.5-5.55.15.1
Mean time between licks in bursts0.00.00.00.1-0.0-0.0
Mean num. licks in bursts0.50.60.7-0.70.80.8
Cd content in liver0.50.60.70.8-0.7-0.7
Co content in liver0.60.60.80.9-0.7-0.7
Cu content in liver0.20.30.4-0.60.50.5
Fe content in liver0.81.01.01.0-1.0-1.0
K content in liver0.00.00.10.1-0.2-0.2
Mg content in liver0.20.20.20.5-0.4-0.4
Mn content in liver0.10.10.1-0.40.40.4
Na content in liver0.20.20.20.5-0.5-0.5
Rb content in liver2.22.72.91.5-1.7-1.7
Se content in liver2.02.42.51.5-1.6-1.6
Sr content in liver0.00.00.0-0.10.10.1
Zn content in liver3.03.33.41.8-1.8-1.8
Bone: minimum diameter8.716.217.6-4.23.93.9
Time in familiar zone, hab. session 10.00.00.00.10.20.2
Time in novel zone, hab. session 10.00.00.0-0.20.00.0
Total zone transitions, hab. session 10.10.10.10.4-0.2-0.2
Total locomotion distance, hab. session 10.30.40.50.5-0.7-0.7
Locomotion velocity, hab. session 10.20.20.30.3-0.6-0.6
Time in familiar zone, hab. session 21.61.71.8-1.21.31.3
Time in novel zone, hab. session 21.81.82.01.2-1.4-1.4
Total zone transitions, hab. session 20.20.30.30.6-0.6-0.6
Total locomotion distance, hab. session 20.40.50.60.6-0.8-0.8
Locomotion velocity, hab. session 20.20.30.40.5-0.6-0.6
Novel to familiar place preference ratio1.41.41.7-1.31.11.1
Novelty place preference0.80.81.0-1.00.80.8
Time in novel zone, NPP test0.50.50.7-0.90.70.7
Total zone transitions, NPP test2.73.83.91.9-2.0-2.0
Total locomotion distance, NPP test3.64.95.12.1-2.3-2.3
Locomotion velocity, NPP test2.33.33.51.7-1.9-1.9
Intraocular pressure5.17.18.73.0-2.5-2.5
Delta distance traveled before/after self-admin0.20.20.2-0.40.40.4
Delta ambulatory time before/after self-admin0.10.10.1-0.20.30.3
Parametrial fat weight1.32.63.21.8-1.5-1.5
Pavlov. Cond. lever latency0.10.10.20.1-0.4-0.4
Pavlov. Cond. magazine entry latency0.81.11.2-0.81.11.1
Pavlov. Cond. change in total contacts1.11.21.5-0.81.21.2
Pavlov. Cond. index score0.60.70.9-0.60.90.9
Pavlov. Cond. latency score0.40.50.7-0.50.80.8
Pavlov. Cond. lever contacts0.00.00.10.10.30.3
Pavlov. Cond. magazine entry number0.20.30.40.4-0.6-0.6
Pavlov. Cond. intertrial magazine entries4.45.36.12.0-2.5-2.5
Pavlov. Cond. lever-magazine prob. diff.0.91.11.3-0.91.11.1
Pavlov. Cond. response bias0.20.20.3-0.30.60.6
Pavlov. Cond. lever latency0.81.11.3-0.91.11.1
Pavlov. Cond. magazine entry latency0.00.10.1-0.2-0.3-0.3
Pavlov. Cond. change in total contacts0.40.60.9-0.90.70.7
Pavlov. Cond. index score0.30.40.50.3-0.7-0.7
Pavlov. Cond. latency score0.30.30.50.2-0.7-0.7
Pavlov. Cond. lever contacts0.71.01.00.9-1.0-1.0
Pavlov. Cond. magazine entry number0.10.10.30.50.00.0
Pavlov. Cond. intertrial magazine entries2.43.14.22.0-1.6-1.6
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.0-0.4-0.4
Pavlov. Cond. response bias0.30.40.50.6-0.7-0.7
Time in closed arm before self-admin1.01.11.4-1.21.01.0
Time in closed arm after self-admin0.40.40.6-0.80.60.6
Time in open arm before self-admin0.10.10.2-0.40.20.2
Time in open arm after self-admin0.20.20.30.5-0.4-0.4
Bone: periosteal estimation9.619.822.5-4.74.34.3
Bone: periosteal perimeter9.415.617.1-4.13.93.9
Bone: post-yield work8.211.213.0-3.63.23.2
Progressive ratio test 1 active lever presses8.48.78.93.0-2.9-2.9
Progressive ratio test 1 breakpoint7.17.47.72.8-2.7-2.7
Progressive ratio test 1 inactive lever presses2.32.53.01.7-1.5-1.5
Progressive ratio test 2 active lever presses2.12.32.71.6-1.4-1.4
Progressive ratio test 2 breakpoint2.42.63.21.8-1.5-1.5
Progressive ratio test 2 inactive lever presses1.21.41.91.4-1.1-1.1
Incentive Sensitization - Responses0.20.20.3-0.40.50.5
Incentive Sensitization - Breakpoint0.20.20.2-0.30.40.4
Sum of active levers in priming session hrs 5-60.30.30.40.5-0.6-0.6
Progressive ratio0.91.11.20.9-1.1-1.1
Food seeking constrained by brief footshock1.62.02.11.3-1.5-1.5
Seeking ratio, punishment vs. effort0.10.10.1-0.30.40.4
Retroperitoneal fat weight1.13.63.61.8-1.9-1.9
Reaction time number correct1.31.82.1-1.41.31.3
Reaction time mean minus median6.28.19.33.1-2.7-2.7
Reaction time mean minus median AUC4.45.76.52.5-2.3-2.3
Reaction time num false alarms1.52.12.21.5-1.4-1.4
Reaction time num false alarms AUC1.82.52.71.6-1.5-1.5
Reaction time trials correct on left1.31.82.1-1.41.31.3
Reaction time trials on left1.01.41.6-1.31.11.1
Reaction time mean0.71.01.11.0-1.0-1.0
Reaction time mean AUC0.40.60.60.8-0.8-0.8
Median of all reaction times0.00.00.00.1-0.1-0.1
Reaction time omissions8.010.912.43.5-3.2-3.2
Reaction time false alarm rate2.02.93.21.8-1.6-1.6
Reaction time premature initiation rate4.96.57.52.7-2.5-2.5
Reaction time premature initiations2.02.83.21.8-1.6-1.6
Std. dev. reaction times5.27.38.22.9-2.6-2.6
Reaction time trials completed1.01.41.6-1.31.11.1
Reaction time trials AUC1.62.32.7-1.61.51.5
Run reversals in cocaine runway, females0.50.50.6-0.60.80.8
Run reversals in cocaine runway, males0.70.71.01.0-0.7-0.7
Latency to leave start box in cocaine runway0.00.00.00.1-0.2-0.2
Latency to leave start box in cocaine runway, F1.71.92.01.4-1.4-1.4
Latency to leave start box in cocaine runway, M2.12.02.4-1.51.41.4
Std. dev. time between licks in bursts1.21.51.81.3-1.1-1.1
Total sessions with >9 infusions1.61.71.91.4-1.3-1.3
Short access day 1 total inactive lever presses1.31.51.71.3-1.2-1.2
Short access day 10 total inactive lever presses0.10.10.1-0.10.30.3
Short access day 1 total infusions0.60.70.70.7-0.9-0.9
Short access day 10 total infusions2.62.92.91.7-1.7-1.7
Short access total infusions1.82.02.01.4-1.4-1.4
Short access day 1 locomotion0.30.30.30.5-0.5-0.5
Short access day 10 total locomotion0.20.20.20.4-0.5-0.5
Short access total locomotion0.50.50.60.8-0.7-0.7
One hour access (0.3 mA shock)0.00.00.00.10.20.2
Compulsive drug intake1.71.71.9-1.41.31.3
One hour access (shock baseline)0.00.00.00.20.10.1
Social response proportion0.10.10.10.4-0.2-0.2
Social responses5.77.38.83.0-2.6-2.6
Social time0.20.20.3-0.50.50.5
Soleus weight1.02.93.0-1.71.71.7
Bone: stiffness18.529.331.4-5.65.35.3
Tibialis anterior weight2.89.510.2-2.93.23.2
Time to tail flick, vehicle, before self-admin0.80.90.90.9-0.9-0.9
Time to tail flick, vehicle, after self-admin0.50.50.6-0.80.70.7
Time to tail flick, test, before self-admin0.10.10.10.3-0.3-0.3
Time to tail flick, test, after self-admin0.90.91.0-0.81.01.0
Delta time to tail flick, vehicle, before/after SA0.80.80.8-0.90.90.9
Delta time to tail flick, test, before/after SA0.80.70.8-0.80.90.9
Tibia length4.613.015.2-3.93.43.4
Ambulatory time before self-admin4.44.54.82.2-2.1-2.1
Ambulatory time after self-admin1.82.02.31.5-1.3-1.3
Bone: tissue strength2.01.92.1-1.41.41.4
Total heroin consumption1.11.31.7-1.31.01.0
Bone: trabecular number4.36.78.1-2.82.42.4
Bone: trabecular spacing1.41.82.31.5-1.2-1.2
Bone: trabecular thickness0.50.50.7-0.50.80.8
Bone: trabecular tissue density0.60.91.1-0.71.11.1
Water consumed over 24 hours0.10.10.10.2-0.4-0.4
Number of responses in last shaping day0.40.40.5-0.50.70.7