Ankrd44

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Ankrd44 0.05 0.03 7.7e-05 0.04 0.03 0.03 0.03 4.7e-05 4.5e-04 1.5e-04 3.9e-04
2 Liver gene expression Ankrd44 0.04 0.03 2.1e-04 0.04 0.03 0.04 0.04 2.0e-05 5.8e-04 8.3e-05 3.6e-05
3 Brain gene expression Ankrd44 0.13 0.08 6.5e-06 0.04 0.05 0.07 0.05 7.2e-05 1.6e-05 9.6e-07 3.7e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density7.412.414.73.8-3.82.9
Area under the delay curve0.10.10.1-0.00.20.4
BMI with tail3.210.313.2-3.63.6-2.2
BMI without tail0.10.30.5-0.40.5-0.7
Body weight0.51.93.11.7-1.60.4
Weight adjusted by age1.31.51.71.1-1.31.2
Bone surface6.912.114.23.8-3.82.8
Bone volume7.913.515.53.9-3.93.1
Breakpoint value in progressive ratio session0.00.00.0-0.10.0-0.1
Number of licking bursts0.30.40.6-0.70.7-0.2
Context. condit. distance diff. score1.92.32.4-1.51.6-1.5
Locomotion velocity, session 10.20.30.4-0.60.60.1
Locomotion distance, session 10.00.00.1-0.30.1-0.1
Locomotion velocity, session 20.20.20.4-0.30.30.6
Locomotion distance, session 20.10.10.1-0.30.3-0.2
Locomotion velocity, session 30.20.20.7-0.10.0-0.8
Locomotion distance, session 30.10.10.2-0.30.1-0.4
Stereotopy head waving bouts, day 31.72.02.2-1.41.3-1.5
Stereotopy head waving duration, day 30.40.51.0-0.60.5-1.0
Locomotion velocity, session 70.20.20.6-0.20.20.8
Locomotion distance, session 70.00.00.1-0.00.20.3
Stereotopy head waving bouts, day 70.50.60.60.7-0.80.8
Stereotopy head waving duration, day 70.10.20.20.4-0.50.3
Locomotion velocity, session 80.20.30.8-0.20.20.9
Locomotion distance, session 81.11.71.9-1.41.3-1.2
Degree of sensitization distance0.30.30.70.5-0.20.9
Degree of sensitization stereotypy0.80.91.20.8-0.91.1
Conditioned locomotion0.60.71.11.0-1.00.4
Cocaine response after cond. corrected3.23.64.81.8-1.72.2
Cocaine response after cond. not corrected4.95.56.62.2-2.22.6
Cocaine response before conditioning0.00.00.1-0.20.1-0.2
Saline control response0.60.71.2-0.70.7-1.1
Bone: connectivity density4.26.57.32.7-2.72.3
Bone: cortical apparent density7.29.511.7-3.43.4-2.3
Bone: cortical area0.20.20.40.5-0.60.3
Bone: cortical porosity3.84.25.92.3-2.41.2
Bone: cortical porosity5.56.08.22.7-2.91.5
Bone: cortical thickness1.32.12.7-1.61.5-1.2
Bone: cortical thickness0.50.61.0-1.00.90.1
Bone: cortical tissue density7.39.711.9-3.43.5-2.3
Condit. Reinf. active minus inactive responses0.30.40.70.4-0.50.8
Condit. Reinf. active-inactive response ratio0.30.30.80.3-0.30.9
Condit. Reinf. active responses1.11.31.71.0-1.11.3
Condit. Reinf. inactive responses0.30.30.30.6-0.60.5
Incentive salience index mean0.81.01.90.7-0.81.4
Condit. Reinf. lever presses0.60.81.00.8-0.81.0
Condit. Reinf. active minus inactive responses4.04.95.12.3-2.22.2
Condit. Reinf. active-inactive response ratio1.31.42.21.0-1.01.5
Condit. Reinf. active responses2.33.23.71.8-1.71.9
Condit. Reinf. inactive responses0.40.50.60.7-0.70.8
Condit. Reinf. lever presses0.20.30.8-0.10.20.9
Condit. Reinf. lever reinforcers received2.53.54.41.8-1.72.1
Conditioned reinforcement - actives0.20.20.4-0.20.2-0.7
Conditioned reinforcement - inactives0.10.10.10.4-0.10.1
Conditioned locomotion0.70.91.1-0.91.1-0.8
Patch foraging indifference point 0 sec0.30.51.0-0.50.41.0
Patch foraging indifference point AUC0.10.10.10.4-0.30.3
Delay disc. indifference point, 0s delay1.31.42.0-1.41.4-0.7
Delay disc. indifference point, 16s delay0.10.10.20.1-0.10.5
Delay disc. indifference point, 2s delay0.60.61.1-0.91.00.1
Delay disc. indifference point, 24s delay0.40.40.4-0.60.6-0.6
Delay disc. indifference point, 4s delay0.40.40.6-0.80.7-0.2
Delay disc. indifference point, 8s delay0.50.50.50.7-0.60.7
Indifference point function ln k0.50.71.1-1.00.90.2
Indifference point function log k0.50.71.1-1.00.90.2
Patch foraging total patch changes 0 sec0.30.50.6-0.80.60.7
Patch foraging total patch changes 12 sec0.10.10.2-0.40.30.5
Patch foraging total patch changes 18 sec0.81.01.7-1.31.20.0
Patch foraging total patch changes 24 sec0.00.00.10.1-0.10.3
Patch foraging total patch changes 6 sec0.10.20.5-0.20.10.7
Patch foraging time to switch 0 sec0.10.10.40.1-0.1-0.6
Patch foraging water rate 0 sec0.00.00.00.2-0.20.2
Patch foraging water rate 12 sec0.20.40.9-0.40.31.0
Patch foraging water rate 18 sec0.20.30.40.4-0.50.6
Patch foraging water rate 24 sec0.00.00.10.2-0.3-0.1
Patch foraging water rate 6 sec0.00.00.1-0.30.2-0.2
Seeking ratio, delayed vs. immediate footshock1.61.92.51.5-1.61.0
Distance traveled before self-admin2.32.53.11.8-1.61.4
Distance traveled after self-admin0.50.60.8-0.80.9-0.5
Extensor digitorum longus weight2.28.59.1-3.03.0-2.7
Bone: elastic displacement0.30.30.5-0.70.6-0.2
Bone: elastic work1.01.31.71.2-1.30.9
Bone: endosteal estimation4.810.412.73.5-3.62.5
Bone: endosteal perimeter4.59.211.13.3-3.32.4
Epididymis fat weight0.61.42.31.5-1.40.0
Delta time in closed arm before/after self-admin0.40.40.6-0.50.5-0.8
Delta time in open arm before/after self-admin7.27.07.52.7-2.72.5
Diff in mean of infusions in LGA sessions0.60.70.90.7-0.91.0
Delay discount exponential model param0.10.10.10.0-0.2-0.4
Extinction: sum of active levers before priming0.50.50.80.8-0.90.3
Active lever presses in extinction session 60.20.20.30.5-0.40.5
Bone: final force0.71.21.91.3-1.4-0.0
Bone: final moment0.50.81.21.0-1.1-0.3
Food consumed during 24 hour testing period0.00.00.10.1-0.1-0.3
Glucose2.02.95.3-1.31.4-2.3
Heart weight0.00.10.2-0.10.10.4
Delay discount hyperbolic model param0.10.10.10.2-0.4-0.3
Intermittent access intake day 1-15 change1.11.11.4-1.10.9-1.2
Intermittent access intake escalation0.90.91.1-0.90.8-1.0
Intermittent access intake escalation 20.00.00.0-0.1-0.2-0.2
Intermitt. access day 1 inactive lever presses2.72.93.6-1.41.8-1.9
Intermitt. access day 15 inactive lever presses0.20.20.2-0.30.4-0.4
Intermitt. access escalation Index0.50.41.20.1-0.2-1.1
Intermittent access day 1 total infusions0.20.20.40.6-0.5-0.2
Intermittent access day 15 total infusions0.40.51.3-0.20.2-1.1
Intermittent access terminal intake (last 3 days)0.30.40.9-0.30.3-0.9
Intermittent access total infusions0.20.20.40.3-0.2-0.7
Intermittent access day 1 locomotion0.10.10.2-0.20.4-0.5
Intermittent access day 15 total locomotion0.20.20.30.6-0.50.2
Intermittent access total locomotion0.10.10.20.10.1-0.5
Intermittent access standard deviation1.41.52.2-1.11.1-1.5
Left kidney weight0.10.40.50.7-0.60.5
Right kidney weight0.20.70.80.8-0.90.8
Cocaine induced anxiety0.20.30.3-0.60.5-0.4
Post-drug Anxiety0.00.00.10.00.10.3
Baseline Anxiety0.60.60.70.8-0.70.8
Tail length7.221.930.55.5-5.42.4
Length with tail8.029.440.16.3-6.23.1
Length without tail0.91.92.71.6-1.60.8
Times rat made contact with spout0.10.10.2-0.00.0-0.5
Lifetime Intake0.30.30.9-0.10.1-1.0
Liver weight, left1.72.83.21.8-1.81.4
Liver weight, right1.32.12.51.6-1.61.2
Locomotor activity0.10.10.10.4-0.40.0
Locomotor testing distance0.00.10.10.1-0.10.4
Locomotor testing rearing0.10.20.30.5-0.40.1
Locomotion in novel chamber1.51.82.2-1.51.5-1.0
Locomotion in novel chamber post-restriction1.01.21.6-1.21.3-0.8
Fecal boli incidents, locomotor time 14.54.95.52.1-2.22.3
Change in fecal boli incidents, locomotor task0.50.40.6-0.60.5-0.8
Time >=10cm from walls, locomotor time 12.32.35.41.0-0.82.3
Bouts of movement, locomotor time 10.40.50.80.5-0.60.9
Total resting periods, locomotor time 10.10.10.3-0.20.10.6
Rest time, locomotor task time 10.30.30.4-0.60.5-0.6
Distance moved, locomotor task time 10.40.50.80.6-0.60.9
Vertical activity count, locomotor time 10.20.20.2-0.40.4-0.5
Time >=10cm from walls, locomotor time 22.52.74.71.3-1.32.2
Bouts of movement, locomotor time 20.30.30.4-0.60.60.4
Total resting periods, locomotor time 20.30.30.4-0.60.60.4
Rest time, locomotor task time 20.30.30.5-0.50.4-0.7
Distance moved, locomotor task time 20.60.71.40.7-0.61.2
Vertical activity count, locomotor time 20.20.20.3-0.50.5-0.1
Light reinforcement 13.56.46.9-2.62.4-2.5
Light reinforcement 20.00.00.1-0.30.20.0
Bone: marrow area4.59.811.83.4-3.42.5
Bone: maximum diameter1.12.02.41.4-1.61.2
Bone: maximum force1.83.14.52.0-2.10.7
Bone: maximum moment1.22.13.21.7-1.80.4
Mean time between licks in bursts0.71.01.6-0.80.9-1.3
Mean num. licks in bursts0.10.10.20.4-0.5-0.1
Cd content in liver0.20.20.50.2-0.3-0.7
Co content in liver0.81.01.0-1.01.0-1.0
Cu content in liver0.10.10.20.3-0.30.4
Fe content in liver1.31.62.01.4-1.40.8
K content in liver0.00.00.00.0-0.00.1
Mg content in liver0.10.10.20.4-0.40.3
Mn content in liver1.61.82.4-1.51.4-1.0
Na content in liver1.31.41.81.1-1.01.3
Rb content in liver1.72.12.91.3-1.31.7
Se content in liver0.10.10.2-0.20.3-0.5
Sr content in liver1.71.63.7-0.70.7-1.9
Zn content in liver0.00.00.1-0.10.1-0.2
Bone: minimum diameter0.71.31.71.2-1.30.8
Time in familiar zone, hab. session 10.10.00.1-0.10.0-0.4
Time in novel zone, hab. session 10.10.10.10.10.00.4
Total zone transitions, hab. session 10.30.41.10.3-0.31.0
Total locomotion distance, hab. session 10.60.81.40.6-0.81.2
Locomotion velocity, hab. session 10.50.70.90.8-1.00.8
Time in familiar zone, hab. session 21.01.01.5-1.11.2-0.6
Time in novel zone, hab. session 20.30.30.50.6-0.70.2
Total zone transitions, hab. session 20.10.10.20.2-0.4-0.2
Total locomotion distance, hab. session 20.20.30.60.6-0.8-0.2
Locomotion velocity, hab. session 20.40.51.00.8-1.0-0.1
Novel to familiar place preference ratio1.21.31.71.3-1.20.7
Novelty place preference1.31.31.81.3-1.30.7
Time in novel zone, NPP test1.01.01.41.2-1.10.6
Total zone transitions, NPP test0.10.10.2-0.40.3-0.3
Total locomotion distance, NPP test0.10.20.3-0.50.3-0.3
Locomotion velocity, NPP test0.20.20.3-0.60.4-0.5
Intraocular pressure2.94.15.1-2.32.2-1.4
Delta distance traveled before/after self-admin2.62.83.3-1.81.7-1.6
Delta ambulatory time before/after self-admin2.42.62.9-1.71.5-1.7
Parametrial fat weight0.00.00.0-0.10.0-0.1
Pavlov. Cond. lever latency0.60.71.3-0.70.6-1.1
Pavlov. Cond. magazine entry latency0.60.71.50.6-0.51.2
Pavlov. Cond. change in total contacts0.60.61.80.3-0.21.3
Pavlov. Cond. index score0.40.50.90.6-0.50.9
Pavlov. Cond. latency score0.70.91.40.9-0.81.2
Pavlov. Cond. lever contacts0.30.40.70.6-0.40.8
Pavlov. Cond. magazine entry number0.70.81.4-0.80.7-1.2
Pavlov. Cond. intertrial magazine entries0.50.60.90.9-0.90.3
Pavlov. Cond. lever-magazine prob. diff.0.30.40.80.4-0.30.9
Pavlov. Cond. response bias0.30.30.60.5-0.40.8
Pavlov. Cond. lever latency0.20.30.90.2-0.2-1.0
Pavlov. Cond. magazine entry latency0.00.00.1-0.10.10.3
Pavlov. Cond. change in total contacts0.60.82.30.2-0.21.5
Pavlov. Cond. index score0.20.30.9-0.00.00.9
Pavlov. Cond. latency score0.20.20.7-0.00.00.8
Pavlov. Cond. lever contacts0.40.61.70.1-0.11.3
Pavlov. Cond. magazine entry number0.30.40.5-0.60.6-0.7
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.40.4-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.30.9-0.10.11.0
Pavlov. Cond. response bias0.71.02.30.6-0.61.5
Time in closed arm before self-admin5.56.37.42.7-2.72.1
Time in closed arm after self-admin1.81.82.41.3-1.21.6
Time in open arm before self-admin9.510.310.5-3.23.2-3.2
Time in open arm after self-admin0.30.30.40.7-0.60.4
Bone: periosteal estimation2.95.97.52.6-2.71.8
Bone: periosteal perimeter2.13.44.32.0-2.11.4
Bone: post-yield work0.60.81.31.1-1.10.2
Progressive ratio test 1 active lever presses0.30.30.8-0.10.3-0.9
Progressive ratio test 1 breakpoint0.20.20.5-0.00.1-0.7
Progressive ratio test 1 inactive lever presses6.57.112.1-2.12.2-3.5
Progressive ratio test 2 active lever presses0.20.20.50.1-0.1-0.7
Progressive ratio test 2 breakpoint0.30.40.9-0.40.4-0.9
Progressive ratio test 2 inactive lever presses1.01.11.9-0.70.9-1.4
Incentive Sensitization - Responses0.30.30.50.6-0.7-0.0
Incentive Sensitization - Breakpoint0.20.20.30.5-0.6-0.1
Sum of active levers in priming session hrs 5-61.01.01.21.1-1.10.7
Progressive ratio0.70.81.1-0.91.1-0.7
Food seeking constrained by brief footshock0.00.00.00.1-0.2-0.2
Seeking ratio, punishment vs. effort0.91.11.71.1-1.30.6
Retroperitoneal fat weight0.20.51.3-0.30.4-1.1
Reaction time number correct0.30.40.6-0.80.7-0.2
Reaction time mean minus median0.20.30.60.4-0.4-0.8
Reaction time mean minus median AUC0.10.10.10.4-0.3-0.4
Reaction time num false alarms3.44.75.8-2.42.2-1.8
Reaction time num false alarms AUC4.05.56.8-2.62.4-2.0
Reaction time trials correct on left0.30.40.6-0.80.7-0.2
Reaction time trials on left0.20.30.5-0.70.6-0.3
Reaction time mean0.81.11.71.3-1.30.0
Reaction time mean AUC0.50.60.91.0-0.9-0.4
Median of all reaction times0.81.21.81.3-1.30.3
Reaction time omissions0.20.20.30.5-0.4-0.5
Reaction time false alarm rate1.92.73.3-1.81.7-1.5
Reaction time premature initiation rate0.81.11.6-1.21.30.4
Reaction time premature initiations1.21.72.5-1.61.60.2
Std. dev. reaction times0.71.01.61.3-1.20.0
Reaction time trials completed0.20.30.5-0.70.6-0.3
Reaction time trials AUC0.30.40.6-0.80.7-0.3
Run reversals in cocaine runway, females0.00.00.0-0.1-0.00.1
Run reversals in cocaine runway, males0.10.10.3-0.20.20.6
Latency to leave start box in cocaine runway6.06.48.1-2.82.8-1.9
Latency to leave start box in cocaine runway, F5.25.77.0-2.62.5-1.9
Latency to leave start box in cocaine runway, M0.60.61.0-0.91.0-0.2
Std. dev. time between licks in bursts4.14.95.4-2.32.3-2.0
Total sessions with >9 infusions1.82.02.9-1.31.2-1.7
Short access day 1 total inactive lever presses0.30.30.5-0.40.7-0.5
Short access day 10 total inactive lever presses0.20.30.4-0.30.6-0.6
Short access day 1 total infusions0.60.71.4-0.70.4-1.2
Short access day 10 total infusions0.10.10.10.3-0.3-0.2
Short access total infusions0.50.61.1-0.60.5-1.1
Short access day 1 locomotion0.60.71.2-0.60.7-1.1
Short access day 10 total locomotion0.00.00.1-0.10.20.1
Short access total locomotion0.10.10.30.1-0.1-0.5
One hour access (0.3 mA shock)0.00.00.10.0-0.0-0.3
Compulsive drug intake0.00.00.1-0.20.3-0.0
One hour access (shock baseline)0.10.20.20.5-0.5-0.2
Social response proportion3.33.54.62.1-2.11.3
Social responses0.40.50.70.8-0.9-0.5
Social time0.20.20.50.3-0.2-0.7
Soleus weight0.10.40.40.6-0.60.6
Bone: stiffness2.03.14.62.1-2.10.5
Tibialis anterior weight0.51.82.0-1.41.4-1.2
Time to tail flick, vehicle, before self-admin0.00.00.0-0.20.2-0.2
Time to tail flick, vehicle, after self-admin0.30.30.30.5-0.60.6
Time to tail flick, test, before self-admin0.40.40.6-0.70.7-0.2
Time to tail flick, test, after self-admin1.61.62.2-1.11.2-1.5
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.00.1-0.1
Delta time to tail flick, test, before/after SA0.60.60.8-0.60.7-0.9
Tibia length4.512.617.04.1-4.02.1
Ambulatory time before self-admin1.01.11.41.2-0.90.9
Ambulatory time after self-admin1.71.92.3-1.41.5-1.1
Bone: tissue strength0.40.40.70.5-0.5-0.8
Total heroin consumption0.00.00.00.2-0.2-0.0
Bone: trabecular number4.77.38.72.9-2.92.1
Bone: trabecular spacing0.30.40.7-0.70.8-0.2
Bone: trabecular thickness2.42.93.21.8-1.71.6
Bone: trabecular tissue density0.60.91.4-0.70.8-1.2
Water consumed over 24 hours0.40.50.7-0.80.8-0.3
Number of responses in last shaping day2.02.13.3-1.21.2-1.8