Anapc11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Anapc11 0.21 0.11 6.7e-15 0.14 0.13 0.12 0.14 2.9e-15 1.8e-14 2.9e-13 4.1e-15
2 Liver mRNA stability Anapc11 0.11 0.07 1.1e-09 0.09 0.09 0.07 0.08 7.5e-10 8.4e-10 9.6e-09 2.7e-09
3 PL gene expression Anapc11 0.04 0.03 8.7e-04 0.02 0.02 0.02 0.02 3.1e-03 1.3e-03 1.3e-03 2.1e-03
4 Adipose mRNA stability Anapc11 0.03 0.02 6.3e-03 0.01 0.01 0 0.01 6.9e-02 2.1e-02 7.7e-02 2.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.50.60.70.7-0.80.7
Area under the delay curve1.21.42.2-1.5-1.51.1-0.2
BMI with tail0.82.63.31.71.7-1.81.3
BMI without tail3.29.912.13.43.4-3.52.2
Body weight2.611.215.84.04.0-3.41.2
Weight adjusted by age1.82.73.71.91.9-1.80.5
Bone surface0.10.20.40.60.6-0.3-0.0
Bone volume0.20.40.60.80.8-0.60.3
Breakpoint value in progressive ratio session0.40.41.00.50.5-0.4-1.0
Number of licking bursts0.20.30.60.50.5-0.40.8
Context. condit. distance diff. score2.12.54.81.01.0-1.72.2
Locomotion velocity, session 13.84.14.9-2.0-2.02.2-2.0
Locomotion distance, session 11.72.13.5-1.9-1.91.10.6
Locomotion velocity, session 25.15.97.6-2.8-2.82.6-1.2
Locomotion distance, session 20.30.40.9-0.7-0.70.00.9
Locomotion velocity, session 32.32.63.4-1.7-1.71.8-1.2
Locomotion distance, session 33.03.34.5-2.1-2.11.9-0.6
Stereotopy head waving bouts, day 30.81.01.4-0.9-0.91.2-0.9
Stereotopy head waving duration, day 30.50.60.8-0.8-0.80.9-0.5
Locomotion velocity, session 70.40.50.7-0.9-0.90.70.1
Locomotion distance, session 71.62.03.0-1.7-1.70.81.2
Stereotopy head waving bouts, day 70.20.20.30.60.6-0.50.1
Stereotopy head waving duration, day 70.20.30.50.70.7-0.40.1
Locomotion velocity, session 80.50.61.6-0.6-0.6-0.11.3
Locomotion distance, session 82.43.49.50.60.6-1.83.1
Degree of sensitization distance1.31.31.80.90.9-1.41.3
Degree of sensitization stereotypy0.50.60.80.80.8-0.90.5
Conditioned locomotion5.05.77.32.52.5-2.71.8
Cocaine response after cond. corrected0.20.20.6-0.4-0.40.4-0.8
Cocaine response after cond. not corrected0.60.70.8-0.9-0.90.9-0.8
Cocaine response before conditioning0.50.60.9-0.9-0.90.80.5
Saline control response2.63.54.62.12.1-2.01.0
Bone: connectivity density0.20.30.90.10.1-0.31.0
Bone: cortical apparent density2.43.24.5-2.1-2.11.9-0.7
Bone: cortical area4.36.710.53.23.2-2.40.2
Bone: cortical porosity1.11.24.10.50.50.5-2.0
Bone: cortical porosity1.01.12.70.90.9-0.0-1.7
Bone: cortical thickness3.15.28.62.92.9-1.8-0.6
Bone: cortical thickness0.91.11.71.31.3-1.0-0.1
Bone: cortical tissue density2.73.65.0-2.2-2.22.0-0.8
Condit. Reinf. active minus inactive responses2.42.63.41.81.8-1.80.8
Condit. Reinf. active-inactive response ratio1.11.21.51.21.2-1.20.5
Condit. Reinf. active responses4.25.26.52.52.5-2.51.2
Condit. Reinf. inactive responses1.01.21.61.21.2-1.30.6
Incentive salience index mean2.02.42.91.71.7-1.70.9
Condit. Reinf. lever presses0.20.30.90.30.3-0.50.9
Condit. Reinf. active minus inactive responses0.40.50.80.70.7-0.90.5
Condit. Reinf. active-inactive response ratio1.11.21.91.41.4-1.1-0.2
Condit. Reinf. active responses0.20.30.50.20.2-0.70.7
Condit. Reinf. inactive responses0.40.50.8-0.9-0.90.30.5
Condit. Reinf. lever presses0.60.81.40.50.5-1.21.2
Condit. Reinf. lever reinforcers received0.40.51.10.30.3-1.01.0
Conditioned reinforcement - actives0.00.10.1-0.2-0.20.10.4
Conditioned reinforcement - inactives0.20.30.60.50.5-0.70.3
Conditioned locomotion0.00.10.20.00.0-0.20.4
Patch foraging indifference point 0 sec0.10.20.20.50.5-0.40.2
Patch foraging indifference point AUC0.00.10.20.00.0-0.30.4
Delay disc. indifference point, 0s delay0.00.00.00.10.1-0.10.2
Delay disc. indifference point, 16s delay0.91.01.3-1.2-1.20.41.1
Delay disc. indifference point, 2s delay0.50.60.8-0.9-0.90.7-0.5
Delay disc. indifference point, 24s delay5.36.07.4-2.7-2.72.6-1.5
Delay disc. indifference point, 4s delay0.40.40.5-0.6-0.60.7-0.4
Delay disc. indifference point, 8s delay1.11.21.4-1.2-1.21.2-1.0
Indifference point function ln k0.40.60.9-1.0-1.00.80.1
Indifference point function log k0.40.60.9-1.0-1.00.80.1
Patch foraging total patch changes 0 sec0.10.20.40.50.5-0.60.4
Patch foraging total patch changes 12 sec0.00.00.10.20.2-0.1-0.4
Patch foraging total patch changes 18 sec0.20.41.0-0.1-0.1-0.61.0
Patch foraging total patch changes 24 sec0.71.21.61.11.1-1.30.6
Patch foraging total patch changes 6 sec0.20.30.40.60.6-0.4-0.3
Patch foraging time to switch 0 sec0.30.70.9-0.9-0.91.0-0.4
Patch foraging water rate 0 sec1.93.95.62.02.0-2.41.3
Patch foraging water rate 12 sec0.61.32.00.80.8-1.41.4
Patch foraging water rate 18 sec1.32.02.71.21.2-1.61.6
Patch foraging water rate 24 sec3.85.37.91.91.9-2.82.4
Patch foraging water rate 6 sec0.30.40.80.40.4-0.70.9
Seeking ratio, delayed vs. immediate footshock1.21.51.91.41.4-1.30.6
Distance traveled before self-admin0.60.81.21.11.1-0.8-0.4
Distance traveled after self-admin1.21.52.01.21.2-1.41.0
Extensor digitorum longus weight0.51.94.30.70.7-1.52.1
Bone: elastic displacement0.91.11.71.31.3-0.9-0.2
Bone: elastic work4.45.79.03.03.0-1.8-1.3
Bone: endosteal estimation0.20.41.40.10.1-0.61.2
Bone: endosteal perimeter0.51.01.71.31.3-0.90.1
Epididymis fat weight1.75.96.92.62.6-2.61.7
Delta time in closed arm before/after self-admin0.30.31.1-0.1-0.1-0.11.0
Delta time in open arm before/after self-admin0.00.00.00.00.0-0.10.1
Diff in mean of infusions in LGA sessions0.10.10.30.30.3-0.1-0.6
Delay discount exponential model param2.22.43.41.81.8-1.60.6
Extinction: sum of active levers before priming0.50.60.8-0.7-0.70.9-0.7
Active lever presses in extinction session 62.02.04.4-1.0-1.01.3-2.1
Bone: final force5.07.911.63.43.4-2.80.7
Bone: final moment5.58.813.23.63.6-2.90.4
Food consumed during 24 hour testing period0.40.60.70.80.8-0.80.4
Glucose11.217.621.3-3.8-3.84.5-4.6
Heart weight0.50.71.01.01.0-0.8-0.4
Delay discount hyperbolic model param2.02.33.21.81.8-1.50.7
Intermittent access intake day 1-15 change0.20.40.60.60.6-0.4-0.8
Intermittent access intake escalation0.20.30.50.60.6-0.4-0.7
Intermittent access intake escalation 20.91.01.41.11.1-0.6-1.2
Intermitt. access day 1 inactive lever presses1.03.75.41.91.9-2.31.4
Intermitt. access day 15 inactive lever presses0.81.62.31.01.0-1.51.4
Intermitt. access escalation Index0.60.91.10.80.8-1.01.0
Intermittent access day 1 total infusions0.00.10.10.30.3-0.30.2
Intermittent access day 15 total infusions0.30.40.50.70.7-0.70.1
Intermittent access terminal intake (last 3 days)0.40.60.80.90.9-0.8-0.1
Intermittent access total infusions0.20.20.30.50.5-0.50.2
Intermittent access day 1 locomotion0.00.00.10.00.0-0.10.3
Intermittent access day 15 total locomotion0.10.30.40.60.6-0.5-0.1
Intermittent access total locomotion0.10.10.20.30.3-0.40.1
Intermittent access standard deviation0.61.32.9-0.8-0.81.1-1.7
Left kidney weight0.00.20.70.10.10.4-0.8
Right kidney weight0.00.10.40.10.10.4-0.6
Cocaine induced anxiety0.81.13.70.60.6-0.1-1.9
Post-drug Anxiety1.41.54.6-0.5-0.50.8-2.1
Baseline Anxiety1.51.82.6-1.6-1.61.4-0.4
Tail length2.911.316.14.04.0-3.41.1
Length with tail1.14.88.02.82.8-1.7-0.7
Length without tail0.41.34.40.50.50.5-2.1
Times rat made contact with spout0.60.71.40.80.8-0.2-1.2
Lifetime Intake0.00.00.00.10.1-0.10.0
Liver weight, left0.71.21.9-1.0-1.01.4-1.0
Liver weight, right2.34.05.52.32.3-1.91.1
Locomotor activity0.60.91.3-1.1-1.11.0-0.3
Locomotor testing distance0.71.32.1-1.5-1.51.00.3
Locomotor testing rearing0.20.40.6-0.8-0.80.30.6
Locomotion in novel chamber0.10.20.3-0.4-0.40.10.6
Locomotion in novel chamber post-restriction2.13.45.12.32.3-1.80.3
Fecal boli incidents, locomotor time 10.20.30.4-0.6-0.60.40.4
Change in fecal boli incidents, locomotor task3.23.24.2-1.6-1.61.9-2.0
Time >=10cm from walls, locomotor time 11.41.52.01.11.1-1.11.4
Bouts of movement, locomotor time 11.41.51.9-1.4-1.41.4-0.7
Total resting periods, locomotor time 12.12.32.9-1.6-1.61.7-1.0
Rest time, locomotor task time 11.01.21.6-1.0-1.01.2-1.3
Distance moved, locomotor task time 10.60.81.01.01.0-0.90.7
Vertical activity count, locomotor time 10.92.22.41.51.5-1.51.4
Time >=10cm from walls, locomotor time 20.00.00.00.10.10.1-0.1
Bouts of movement, locomotor time 20.50.91.3-1.1-1.10.9-0.0
Total resting periods, locomotor time 20.20.40.7-0.8-0.80.50.4
Rest time, locomotor task time 20.10.10.2-0.2-0.20.4-0.2
Distance moved, locomotor task time 20.00.00.00.10.1-0.10.2
Vertical activity count, locomotor time 20.20.30.90.30.3-0.60.9
Light reinforcement 11.64.04.41.91.9-2.12.1
Light reinforcement 22.53.94.92.22.2-1.91.4
Bone: marrow area0.20.41.30.10.1-0.61.2
Bone: maximum diameter1.12.03.31.81.8-1.10.1
Bone: maximum force4.88.412.03.53.5-3.00.9
Bone: maximum moment5.18.913.13.63.6-3.00.6
Mean time between licks in bursts0.71.62.4-1.6-1.61.3-0.1
Mean num. licks in bursts0.20.31.20.10.10.0-1.1
Cd content in liver0.50.61.5-0.6-0.6-0.31.2
Co content in liver0.00.00.00.20.20.0-0.1
Cu content in liver0.60.70.90.90.9-0.2-1.0
Fe content in liver0.20.20.3-0.6-0.60.20.5
K content in liver2.62.53.21.41.4-1.61.8
Mg content in liver2.02.15.20.80.8-1.42.3
Mn content in liver0.10.10.10.30.3-0.20.2
Na content in liver0.20.20.70.10.1-0.30.8
Rb content in liver2.93.34.51.71.7-2.11.8
Se content in liver0.40.50.70.70.7-0.80.6
Sr content in liver1.21.02.3-0.6-0.61.0-1.5
Zn content in liver1.31.41.81.41.4-1.20.7
Bone: minimum diameter2.74.97.72.82.8-2.00.2
Time in familiar zone, hab. session 10.10.10.3-0.2-0.20.2-0.6
Time in novel zone, hab. session 10.10.10.20.20.2-0.20.5
Total zone transitions, hab. session 10.10.20.3-0.5-0.50.10.5
Total locomotion distance, hab. session 10.50.61.20.50.5-0.91.1
Locomotion velocity, hab. session 10.50.71.30.60.6-0.91.1
Time in familiar zone, hab. session 20.10.10.2-0.5-0.50.10.3
Time in novel zone, hab. session 20.00.00.1-0.2-0.20.3-0.1
Total zone transitions, hab. session 20.81.03.5-0.2-0.2-0.81.9
Total locomotion distance, hab. session 21.92.45.40.90.9-1.72.3
Locomotion velocity, hab. session 22.12.85.31.21.2-1.92.3
Novel to familiar place preference ratio1.61.82.71.61.6-1.1-0.8
Novelty place preference1.51.62.41.61.6-1.0-0.9
Time in novel zone, NPP test1.31.42.01.41.4-1.0-0.6
Total zone transitions, NPP test1.01.45.1-0.3-0.3-0.72.2
Total locomotion distance, NPP test1.92.57.30.50.5-1.52.7
Locomotion velocity, NPP test1.62.25.40.70.7-1.52.3
Intraocular pressure0.91.22.01.11.1-1.40.9
Delta distance traveled before/after self-admin0.20.20.7-0.2-0.2-0.10.8
Delta ambulatory time before/after self-admin0.50.60.7-0.8-0.80.40.9
Parametrial fat weight0.71.71.91.41.4-1.41.0
Pavlov. Cond. lever latency0.81.02.6-0.8-0.8-0.31.6
Pavlov. Cond. magazine entry latency1.21.62.11.51.5-0.6-1.3
Pavlov. Cond. change in total contacts0.70.72.50.20.20.5-1.6
Pavlov. Cond. index score1.82.33.71.91.9-1.0-0.9
Pavlov. Cond. latency score1.41.82.61.61.6-0.5-1.2
Pavlov. Cond. lever contacts0.50.60.80.90.9-0.1-0.8
Pavlov. Cond. magazine entry number1.41.83.6-1.3-1.30.31.9
Pavlov. Cond. intertrial magazine entries0.91.01.90.70.7-1.21.4
Pavlov. Cond. lever-magazine prob. diff.1.82.23.61.91.9-1.0-0.8
Pavlov. Cond. response bias1.11.42.61.21.2-0.2-1.6
Pavlov. Cond. lever latency1.72.33.4-1.2-1.21.8-1.7
Pavlov. Cond. magazine entry latency0.91.11.6-1.3-1.30.41.1
Pavlov. Cond. change in total contacts0.30.41.3-0.2-0.2-0.61.1
Pavlov. Cond. index score0.30.41.3-0.1-0.1-0.61.1
Pavlov. Cond. latency score0.40.61.7-0.1-0.1-0.71.3
Pavlov. Cond. lever contacts1.42.02.91.01.0-1.71.7
Pavlov. Cond. magazine entry number0.60.71.10.90.9-0.2-1.0
Pavlov. Cond. intertrial magazine entries1.32.02.51.61.6-1.60.8
Pavlov. Cond. lever-magazine prob. diff.0.30.41.1-0.4-0.4-0.41.0
Pavlov. Cond. response bias0.50.61.60.20.2-0.91.3
Time in closed arm before self-admin0.60.81.6-0.6-0.61.0-1.3
Time in closed arm after self-admin1.61.72.1-1.2-1.21.5-1.4
Time in open arm before self-admin0.40.41.40.20.2-0.51.2
Time in open arm after self-admin0.30.30.80.20.2-0.50.9
Bone: periosteal estimation1.53.14.42.12.1-1.80.7
Bone: periosteal perimeter2.03.45.52.42.4-1.1-1.2
Bone: post-yield work0.10.10.3-0.1-0.1-0.20.6
Progressive ratio test 1 active lever presses0.30.40.50.70.7-0.70.3
Progressive ratio test 1 breakpoint0.40.50.60.80.8-0.70.3
Progressive ratio test 1 inactive lever presses3.34.76.12.22.2-2.51.7
Progressive ratio test 2 active lever presses0.20.20.30.40.4-0.60.3
Progressive ratio test 2 breakpoint0.20.20.30.50.5-0.60.3
Progressive ratio test 2 inactive lever presses0.10.10.20.40.4-0.4-0.2
Incentive Sensitization - Responses0.10.20.30.40.4-0.50.3
Incentive Sensitization - Breakpoint0.10.10.20.30.3-0.50.2
Sum of active levers in priming session hrs 5-60.40.40.80.40.4-0.5-0.9
Progressive ratio0.71.21.7-1.3-1.31.0-0.4
Food seeking constrained by brief footshock0.60.71.5-0.5-0.50.8-1.2
Seeking ratio, punishment vs. effort0.20.30.40.60.6-0.50.4
Retroperitoneal fat weight3.816.019.44.44.4-4.32.6
Reaction time number correct2.44.612.60.90.9-2.13.5
Reaction time mean minus median0.20.61.2-0.5-0.50.9-1.1
Reaction time mean minus median AUC0.00.10.2-0.1-0.10.4-0.4
Reaction time num false alarms0.10.20.2-0.5-0.50.4-0.2
Reaction time num false alarms AUC0.30.40.7-0.8-0.80.7-0.0
Reaction time trials correct on left2.44.612.60.90.9-2.13.5
Reaction time trials on left2.54.713.00.90.9-2.13.6
Reaction time mean0.20.40.50.70.7-0.70.4
Reaction time mean AUC0.40.60.80.70.7-0.80.9
Median of all reaction times0.60.81.00.80.8-1.00.8
Reaction time omissions0.20.30.50.50.5-0.60.7
Reaction time false alarm rate1.52.13.3-1.1-1.11.6-1.8
Reaction time premature initiation rate1.31.92.8-1.7-1.71.2-0.5
Reaction time premature initiations0.61.02.1-1.0-1.0-0.11.5
Std. dev. reaction times0.10.30.4-0.6-0.60.5-0.1
Reaction time trials completed2.54.713.00.90.9-2.13.6
Reaction time trials AUC2.54.913.10.90.9-2.23.6
Run reversals in cocaine runway, females0.30.30.7-0.5-0.50.10.8
Run reversals in cocaine runway, males0.70.70.80.90.9-0.5-0.9
Latency to leave start box in cocaine runway0.20.20.3-0.6-0.60.40.4
Latency to leave start box in cocaine runway, F0.60.72.4-0.3-0.3-0.21.6
Latency to leave start box in cocaine runway, M0.30.30.8-0.3-0.30.5-0.9
Std. dev. time between licks in bursts2.43.27.61.01.0-1.82.8
Total sessions with >9 infusions0.30.30.5-0.7-0.70.6-0.1
Short access day 1 total inactive lever presses0.20.20.80.00.0-0.30.9
Short access day 10 total inactive lever presses1.63.85.02.12.1-2.21.2
Short access day 1 total infusions1.01.41.9-1.4-1.41.3-0.2
Short access day 10 total infusions0.50.71.01.01.0-0.8-0.2
Short access total infusions0.00.00.0-0.2-0.20.1-0.1
Short access day 1 locomotion0.40.50.7-0.6-0.60.8-0.8
Short access day 10 total locomotion0.50.92.2-0.5-0.50.9-1.5
Short access total locomotion0.40.51.2-0.3-0.30.7-1.1
One hour access (0.3 mA shock)0.40.40.50.60.6-0.70.6
Compulsive drug intake1.41.62.11.11.1-1.41.5
One hour access (shock baseline)0.00.00.00.10.1-0.00.1
Social response proportion0.20.20.3-0.5-0.50.10.5
Social responses0.10.10.3-0.1-0.10.10.5
Social time0.00.10.2-0.1-0.10.00.5
Soleus weight1.13.34.82.22.2-1.80.6
Bone: stiffness0.61.11.31.11.1-1.10.7
Tibialis anterior weight0.10.20.60.20.2-0.40.8
Time to tail flick, vehicle, before self-admin0.20.30.4-0.6-0.60.6-0.2
Time to tail flick, vehicle, after self-admin1.52.02.7-1.6-1.61.6-0.2
Time to tail flick, test, before self-admin0.50.50.6-0.8-0.80.6-0.6
Time to tail flick, test, after self-admin1.91.92.1-1.4-1.41.5-1.2
Delta time to tail flick, vehicle, before/after SA0.20.10.5-0.1-0.1-0.20.7
Delta time to tail flick, test, before/after SA0.70.81.0-0.7-0.71.0-1.0
Tibia length6.317.428.15.35.3-3.6-0.7
Ambulatory time before self-admin1.52.33.41.81.8-1.6-0.1
Ambulatory time after self-admin0.80.91.21.01.0-1.10.8
Bone: tissue strength2.62.63.11.81.8-1.71.2
Total heroin consumption0.20.31.10.00.00.2-1.0
Bone: trabecular number0.00.00.00.10.10.0-0.1
Bone: trabecular spacing2.12.86.90.80.8-1.82.6
Bone: trabecular thickness0.70.93.10.50.50.3-1.8
Bone: trabecular tissue density0.71.01.5-1.2-1.21.0-0.1
Water consumed over 24 hours0.50.61.6-0.3-0.30.9-1.2
Number of responses in last shaping day0.00.00.0-0.2-0.20.10.0