Anapc11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Anapc11 0.24 0.13 1.1e-16 0.15 0.14 0.14 0.15 1.3e-16 9.3e-16 4.5e-15 2.1e-16
2 Liver mRNA stability Anapc11 0.1 0.07 6.0e-10 0.09 0.09 0.09 0.09 3.6e-10 3.6e-10 4.6e-10 5.3e-10
3 PL gene expression Anapc11 0.04 0.02 3.1e-04 0.02 0.03 0.03 0.03 3.5e-03 1.4e-04 2.2e-04 5.4e-04
4 Adipose mRNA stability Anapc11 0.03 0.02 7.2e-03 0 0.01 0.01 0.01 8.0e-02 2.2e-02 2.6e-02 3.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.50.6-0.7-0.7-0.80.8
Area under the delay curve1.51.62.41.51.51.3-0.4
BMI with tail0.93.03.7-1.7-1.7-1.91.5
BMI without tail8.617.723.2-4.1-4.1-4.83.8
Body weight3.815.921.5-4.6-4.6-4.21.7
Weight adjusted by age2.32.63.9-2.0-2.0-1.60.3
Bone surface0.20.40.6-0.8-0.8-0.50.1
Bone volume0.30.50.7-0.8-0.8-0.70.5
Breakpoint value in progressive ratio session0.30.30.8-0.4-0.4-0.2-0.9
Number of licking bursts0.40.40.7-0.6-0.6-0.60.9
Context. condit. distance diff. score2.02.54.9-1.0-1.0-1.72.2
Locomotion velocity, session 14.04.35.22.02.02.3-2.0
Locomotion distance, session 11.72.23.41.81.81.20.7
Locomotion velocity, session 24.95.77.42.72.72.6-1.2
Locomotion distance, session 20.30.51.00.60.60.11.0
Locomotion velocity, session 32.22.63.51.71.71.9-1.2
Locomotion distance, session 32.93.14.32.12.11.9-0.6
Stereotopy head waving bouts, day 30.91.11.41.01.01.2-1.0
Stereotopy head waving duration, day 30.40.50.60.70.70.8-0.5
Locomotion velocity, session 70.50.50.70.90.90.70.1
Locomotion distance, session 71.62.03.11.71.70.91.1
Stereotopy head waving bouts, day 70.20.20.2-0.5-0.5-0.50.3
Stereotopy head waving duration, day 70.30.30.6-0.7-0.7-0.50.0
Locomotion velocity, session 80.50.61.70.60.6-0.11.3
Locomotion distance, session 82.33.49.8-0.6-0.6-1.83.1
Degree of sensitization distance1.21.21.7-0.9-0.9-1.31.3
Degree of sensitization stereotypy0.50.60.8-0.8-0.8-0.90.5
Conditioned locomotion5.36.27.9-2.6-2.6-2.81.8
Cocaine response after cond. corrected0.20.20.50.40.40.4-0.7
Cocaine response after cond. not corrected0.70.80.90.90.90.9-0.7
Cocaine response before conditioning0.50.60.90.90.90.70.4
Saline control response2.93.85.1-2.3-2.3-2.10.8
Bone: connectivity density0.20.31.1-0.1-0.1-0.41.1
Bone: cortical apparent density2.53.44.32.12.12.0-0.9
Bone: cortical area5.17.711.8-3.4-3.4-2.70.4
Bone: cortical porosity1.31.55.0-0.5-0.50.4-2.2
Bone: cortical porosity1.01.13.0-0.8-0.80.0-1.7
Bone: cortical thickness3.55.89.3-3.1-3.1-2.1-0.5
Bone: cortical thickness1.31.52.3-1.5-1.5-1.1-0.1
Bone: cortical tissue density3.03.95.02.22.22.2-1.0
Condit. Reinf. active minus inactive responses2.32.63.4-1.8-1.8-1.80.8
Condit. Reinf. active-inactive response ratio1.11.11.4-1.2-1.2-1.20.5
Condit. Reinf. active responses4.25.26.6-2.5-2.5-2.61.2
Condit. Reinf. inactive responses1.11.31.7-1.2-1.2-1.30.6
Incentive salience index mean2.02.43.0-1.7-1.7-1.71.0
Condit. Reinf. lever presses0.20.30.8-0.2-0.2-0.40.9
Condit. Reinf. active minus inactive responses0.70.91.3-1.0-1.0-1.20.5
Condit. Reinf. active-inactive response ratio1.41.52.1-1.5-1.5-1.2-0.1
Condit. Reinf. active responses0.30.40.7-0.5-0.5-0.90.7
Condit. Reinf. inactive responses0.30.30.50.70.70.30.4
Condit. Reinf. lever presses0.50.71.2-0.5-0.5-1.01.1
Condit. Reinf. lever reinforcers received0.40.61.1-0.5-0.5-1.01.0
Conditioned reinforcement - actives0.30.30.8-0.2-0.2-0.40.9
Conditioned reinforcement - inactives0.80.91.3-1.1-1.1-1.10.1
Conditioned locomotion0.10.10.2-0.2-0.2-0.30.4
Patch foraging indifference point 0 sec0.10.10.2-0.4-0.4-0.30.1
Patch foraging indifference point AUC0.00.00.00.10.1-0.10.2
Delay disc. indifference point, 0s delay0.00.00.00.20.20.20.0
Delay disc. indifference point, 16s delay1.11.11.51.21.20.61.0
Delay disc. indifference point, 2s delay0.50.60.80.90.90.7-0.5
Delay disc. indifference point, 24s delay5.75.56.72.62.62.6-1.4
Delay disc. indifference point, 4s delay0.50.60.70.80.80.8-0.5
Delay disc. indifference point, 8s delay1.31.41.61.21.21.3-1.1
Indifference point function ln k0.50.71.01.01.00.90.0
Indifference point function log k0.50.71.01.01.00.90.0
Patch foraging total patch changes 0 sec0.10.10.2-0.4-0.4-0.50.3
Patch foraging total patch changes 12 sec0.00.00.10.00.00.0-0.4
Patch foraging total patch changes 18 sec0.20.30.80.20.2-0.40.9
Patch foraging total patch changes 24 sec0.60.81.1-0.9-0.9-1.00.6
Patch foraging total patch changes 6 sec0.20.20.4-0.6-0.6-0.4-0.3
Patch foraging time to switch 0 sec0.40.70.90.90.90.9-0.4
Patch foraging water rate 0 sec2.54.15.6-2.1-2.1-2.41.4
Patch foraging water rate 12 sec0.71.01.8-0.6-0.6-1.21.3
Patch foraging water rate 18 sec1.52.02.8-1.2-1.2-1.51.7
Patch foraging water rate 24 sec3.54.86.7-1.9-1.9-2.62.4
Patch foraging water rate 6 sec0.30.40.8-0.4-0.4-0.70.9
Seeking ratio, delayed vs. immediate footshock1.51.82.2-1.5-1.5-1.50.7
Distance traveled before self-admin0.90.91.3-1.1-1.1-0.6-0.8
Distance traveled after self-admin0.91.01.3-1.0-1.0-1.10.9
Extensor digitorum longus weight0.52.05.0-0.7-0.7-1.42.2
Bone: elastic displacement1.01.11.8-1.3-1.3-0.8-0.3
Bone: elastic work4.65.99.3-3.1-3.1-1.9-1.2
Bone: endosteal estimation0.30.61.8-0.3-0.3-0.71.3
Bone: endosteal perimeter0.61.31.9-1.4-1.4-1.10.3
Epididymis fat weight1.43.24.0-1.9-1.9-2.01.4
Delta time in closed arm before/after self-admin0.10.10.20.20.20.10.4
Delta time in open arm before/after self-admin0.20.10.2-0.3-0.3-0.40.5
Diff in mean of infusions in LGA sessions0.20.30.40.50.50.6-0.5
Delay discount exponential model param2.42.63.5-1.9-1.9-1.70.8
Extinction: sum of active levers before priming1.61.62.31.21.21.5-1.0
Active lever presses in extinction session 61.00.91.80.70.70.9-1.3
Bone: final force4.97.811.3-3.4-3.4-2.90.6
Bone: final moment5.48.712.9-3.6-3.6-3.00.4
Food consumed during 24 hour testing period0.40.50.7-0.8-0.8-0.80.4
Glucose6.39.613.72.62.63.3-3.7
Heart weight0.40.50.8-0.9-0.9-0.80.1
Delay discount hyperbolic model param2.32.53.4-1.8-1.8-1.60.7
Intermittent access intake day 1-15 change0.50.50.6-0.8-0.8-0.8-0.1
Intermittent access intake escalation0.50.50.8-0.8-0.8-0.90.2
Intermittent access intake escalation 21.11.11.5-1.2-1.2-0.9-0.7
Intermitt. access day 1 inactive lever presses0.70.71.0-1.0-1.0-0.9-0.3
Intermitt. access day 15 inactive lever presses1.51.72.0-1.3-1.3-1.41.1
Intermitt. access escalation Index1.81.62.2-1.1-1.1-1.41.5
Intermittent access day 1 total infusions0.40.40.5-0.7-0.7-0.70.4
Intermittent access day 15 total infusions0.80.91.2-1.0-1.0-1.10.6
Intermittent access terminal intake (last 3 days)1.11.21.6-1.2-1.2-1.20.4
Intermittent access total infusions0.60.70.9-0.9-0.9-1.00.6
Intermittent access day 1 locomotion0.50.50.7-0.6-0.6-0.80.8
Intermittent access day 15 total locomotion0.20.20.3-0.5-0.5-0.5-0.1
Intermittent access total locomotion0.30.40.6-0.6-0.6-0.80.3
Intermittent access standard deviation1.11.22.80.60.61.1-1.7
Left kidney weight0.10.20.5-0.2-0.20.3-0.7
Right kidney weight0.00.00.10.00.00.3-0.3
Cocaine induced anxiety2.42.83.8-1.9-1.9-1.3-1.4
Post-drug Anxiety0.30.41.2-0.4-0.4-0.1-1.1
Baseline Anxiety5.35.78.62.92.92.40.2
Tail length6.218.823.5-4.7-4.7-4.82.8
Length with tail1.97.110.9-3.3-3.3-2.60.2
Length without tail1.43.17.40.80.81.9-2.7
Times rat made contact with spout0.70.81.4-0.9-0.9-0.3-1.2
Lifetime Intake0.20.20.3-0.4-0.4-0.50.3
Liver weight, left0.60.92.30.50.51.0-1.5
Liver weight, right1.32.23.3-1.8-1.8-1.40.2
Locomotor activity0.50.81.01.01.01.0-0.4
Locomotor testing distance0.50.81.21.11.10.80.3
Locomotor testing rearing0.20.30.40.60.60.30.5
Locomotion in novel chamber0.10.10.20.30.30.10.5
Locomotion in novel chamber post-restriction2.12.53.7-1.9-1.9-1.60.3
Fecal boli incidents, locomotor time 10.40.50.70.90.90.60.2
Change in fecal boli incidents, locomotor task3.23.13.81.51.51.9-1.9
Time >=10cm from walls, locomotor time 11.61.72.1-1.2-1.2-1.21.5
Bouts of movement, locomotor time 11.61.72.21.51.51.5-0.6
Total resting periods, locomotor time 12.22.43.21.71.71.8-1.0
Rest time, locomotor task time 10.60.60.90.70.70.8-0.9
Distance moved, locomotor task time 10.91.01.2-1.1-1.1-1.00.8
Vertical activity count, locomotor time 12.22.32.5-1.5-1.5-1.61.5
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.1-0.10.2
Bouts of movement, locomotor time 21.01.11.71.31.30.90.0
Total resting periods, locomotor time 20.60.61.01.01.00.60.4
Rest time, locomotor task time 20.10.10.10.20.20.3-0.2
Distance moved, locomotor task time 20.00.00.0-0.1-0.1-0.20.2
Vertical activity count, locomotor time 20.50.61.5-0.4-0.4-0.81.2
Light reinforcement 12.13.84.2-1.9-1.9-2.02.0
Light reinforcement 22.93.84.8-2.2-2.2-2.01.3
Bone: marrow area0.30.61.7-0.2-0.2-0.71.3
Bone: maximum diameter1.42.63.9-2.0-2.0-1.50.4
Bone: maximum force5.08.612.1-3.5-3.5-3.10.9
Bone: maximum moment5.59.413.5-3.7-3.7-3.20.7
Mean time between licks in bursts1.21.62.41.61.61.3-0.0
Mean num. licks in bursts0.30.41.4-0.1-0.10.2-1.2
Cd content in liver1.31.42.31.51.51.00.1
Co content in liver0.00.10.10.30.30.20.2
Cu content in liver0.50.61.9-0.3-0.30.4-1.4
Fe content in liver0.70.81.21.11.10.90.1
K content in liver2.92.83.2-1.7-1.7-1.81.5
Mg content in liver1.51.53.9-0.6-0.6-1.22.0
Mn content in liver0.20.20.3-0.6-0.6-0.4-0.1
Na content in liver0.00.00.0-0.1-0.10.1-0.1
Rb content in liver1.51.82.5-1.2-1.2-1.61.4
Se content in liver0.40.40.6-0.7-0.7-0.70.5
Sr content in liver1.51.43.70.50.51.1-1.9
Zn content in liver0.10.10.20.20.20.5-0.4
Bone: minimum diameter2.75.17.7-2.8-2.8-2.20.3
Time in familiar zone, hab. session 10.20.10.40.30.30.3-0.6
Time in novel zone, hab. session 10.10.10.2-0.2-0.2-0.20.4
Total zone transitions, hab. session 10.20.20.40.60.60.20.5
Total locomotion distance, hab. session 10.40.61.4-0.5-0.5-0.81.2
Locomotion velocity, hab. session 10.50.71.4-0.6-0.6-0.91.2
Time in familiar zone, hab. session 20.10.10.20.40.40.10.4
Time in novel zone, hab. session 20.00.00.10.20.20.3-0.2
Total zone transitions, hab. session 20.81.03.40.30.3-0.61.9
Total locomotion distance, hab. session 21.92.55.6-0.9-0.9-1.62.4
Locomotion velocity, hab. session 22.12.95.5-1.2-1.2-1.82.3
Novel to familiar place preference ratio1.71.72.6-1.6-1.6-1.0-0.8
Novelty place preference1.61.62.4-1.5-1.5-1.0-0.9
Time in novel zone, NPP test1.31.32.0-1.4-1.4-0.9-0.7
Total zone transitions, NPP test1.01.45.00.40.4-0.52.2
Total locomotion distance, NPP test1.82.57.4-0.5-0.5-1.42.7
Locomotion velocity, NPP test1.52.15.5-0.7-0.7-1.42.3
Intraocular pressure0.60.91.5-0.8-0.8-1.20.8
Delta distance traveled before/after self-admin0.40.41.60.30.3-0.21.3
Delta ambulatory time before/after self-admin0.70.81.11.01.00.41.0
Parametrial fat weight1.53.04.3-2.1-2.1-1.80.5
Pavlov. Cond. lever latency0.81.02.70.80.8-0.21.7
Pavlov. Cond. magazine entry latency1.31.72.2-1.5-1.5-0.7-1.3
Pavlov. Cond. change in total contacts0.60.72.5-0.2-0.20.5-1.6
Pavlov. Cond. index score1.82.33.7-1.9-1.9-1.1-0.9
Pavlov. Cond. latency score1.41.82.6-1.6-1.6-0.7-1.2
Pavlov. Cond. lever contacts0.40.50.7-0.8-0.8-0.2-0.8
Pavlov. Cond. magazine entry number1.31.73.61.21.20.31.9
Pavlov. Cond. intertrial magazine entries0.81.01.9-0.7-0.7-1.11.4
Pavlov. Cond. lever-magazine prob. diff.1.92.43.8-2.0-2.0-1.1-0.9
Pavlov. Cond. response bias1.21.42.3-1.3-1.3-0.4-1.5
Pavlov. Cond. lever latency1.31.72.51.01.01.5-1.6
Pavlov. Cond. magazine entry latency1.01.11.51.21.20.51.1
Pavlov. Cond. change in total contacts0.30.41.40.20.2-0.41.2
Pavlov. Cond. index score0.30.41.40.20.2-0.51.2
Pavlov. Cond. latency score0.50.61.90.10.1-0.61.4
Pavlov. Cond. lever contacts1.82.53.3-1.3-1.3-1.81.8
Pavlov. Cond. magazine entry number0.70.91.5-1.0-1.0-0.2-1.2
Pavlov. Cond. intertrial magazine entries1.51.92.5-1.6-1.6-1.60.6
Pavlov. Cond. lever-magazine prob. diff.0.30.41.40.30.3-0.41.2
Pavlov. Cond. response bias0.60.92.1-0.4-0.4-1.01.4
Time in closed arm before self-admin0.40.51.30.30.30.7-1.1
Time in closed arm after self-admin2.02.13.61.11.11.5-1.9
Time in open arm before self-admin0.10.10.30.30.30.10.6
Time in open arm after self-admin0.20.20.70.00.0-0.10.8
Bone: periosteal estimation2.14.35.7-2.4-2.4-2.21.0
Bone: periosteal perimeter2.13.65.8-2.4-2.4-1.4-0.7
Bone: post-yield work0.20.30.9-0.0-0.0-0.40.9
Progressive ratio test 1 active lever presses1.31.41.7-1.3-1.3-1.30.7
Progressive ratio test 1 breakpoint1.71.82.2-1.5-1.5-1.40.7
Progressive ratio test 1 inactive lever presses3.03.34.0-2.0-2.0-2.01.1
Progressive ratio test 2 active lever presses0.20.30.4-0.5-0.5-0.60.2
Progressive ratio test 2 breakpoint0.50.50.8-0.7-0.7-0.90.6
Progressive ratio test 2 inactive lever presses0.20.20.3-0.6-0.6-0.6-0.1
Incentive Sensitization - Responses0.10.10.2-0.3-0.3-0.40.1
Incentive Sensitization - Breakpoint0.00.00.1-0.2-0.2-0.3-0.0
Sum of active levers in priming session hrs 5-60.30.30.4-0.5-0.5-0.5-0.7
Progressive ratio0.50.60.90.90.90.8-0.3
Food seeking constrained by brief footshock0.40.50.90.50.50.8-1.0
Seeking ratio, punishment vs. effort0.20.30.4-0.6-0.6-0.50.3
Retroperitoneal fat weight4.715.320.7-4.6-4.6-4.11.7
Reaction time number correct3.04.312.4-0.8-0.8-1.93.5
Reaction time mean minus median0.40.51.20.40.40.8-1.1
Reaction time mean minus median AUC0.00.10.20.00.00.2-0.4
Reaction time num false alarms0.10.20.30.50.50.5-0.1
Reaction time num false alarms AUC0.40.60.80.90.90.70.0
Reaction time trials correct on left3.04.312.4-0.8-0.8-1.93.5
Reaction time trials on left3.14.512.8-0.8-0.8-1.93.6
Reaction time mean0.30.40.5-0.7-0.7-0.70.4
Reaction time mean AUC0.50.60.8-0.7-0.7-0.80.9
Median of all reaction times0.50.70.9-0.8-0.8-0.90.8
Reaction time omissions0.30.40.7-0.5-0.5-0.60.9
Reaction time false alarm rate1.52.13.01.21.21.6-1.7
Reaction time premature initiation rate1.21.72.41.61.61.3-0.5
Reaction time premature initiations0.71.02.10.90.90.11.5
Std. dev. reaction times0.20.20.30.60.60.5-0.1
Reaction time trials completed3.14.512.8-0.8-0.8-1.93.6
Reaction time trials AUC3.24.512.8-0.9-0.9-2.03.6
Run reversals in cocaine runway, females0.30.30.70.40.40.10.9
Run reversals in cocaine runway, males0.60.61.1-0.8-0.8-0.4-1.1
Latency to leave start box in cocaine runway0.20.20.20.50.50.30.4
Latency to leave start box in cocaine runway, F0.40.51.50.40.4-0.11.2
Latency to leave start box in cocaine runway, M0.00.00.2-0.1-0.10.0-0.4
Std. dev. time between licks in bursts2.93.57.7-1.1-1.1-1.92.8
Total sessions with >9 infusions0.20.20.30.50.50.40.1
Short access day 1 total inactive lever presses0.40.41.40.00.0-0.41.2
Short access day 10 total inactive lever presses2.42.73.8-1.9-1.9-1.80.2
Short access day 1 total infusions1.61.72.31.51.51.4-0.5
Short access day 10 total infusions0.30.30.5-0.7-0.7-0.6-0.1
Short access total infusions0.00.00.00.10.10.0-0.0
Short access day 1 locomotion0.70.71.10.70.71.0-0.9
Short access day 10 total locomotion0.60.71.50.60.60.8-1.2
Short access total locomotion0.90.91.10.90.91.0-1.0
One hour access (0.3 mA shock)1.71.92.5-1.5-1.5-1.60.9
Compulsive drug intake0.70.70.8-0.9-0.9-0.90.6
One hour access (shock baseline)0.30.30.5-0.5-0.5-0.60.7
Social response proportion0.30.30.40.70.70.30.4
Social responses0.10.10.20.10.10.10.5
Social time0.10.10.30.10.10.00.5
Soleus weight1.33.95.1-2.3-2.3-2.11.0
Bone: stiffness0.81.31.6-1.2-1.2-1.20.6
Tibialis anterior weight0.10.51.2-0.4-0.4-0.71.1
Time to tail flick, vehicle, before self-admin0.10.10.1-0.3-0.3-0.30.4
Time to tail flick, vehicle, after self-admin1.71.82.51.61.61.5-0.2
Time to tail flick, test, before self-admin0.10.10.20.10.1-0.0-0.4
Time to tail flick, test, after self-admin0.40.40.60.80.80.7-0.3
Delta time to tail flick, vehicle, before/after SA0.30.30.40.60.60.20.6
Delta time to tail flick, test, before/after SA0.80.70.90.80.81.0-0.7
Tibia length6.217.427.5-5.2-5.2-3.7-0.8
Ambulatory time before self-admin1.81.82.8-1.7-1.7-1.1-0.5
Ambulatory time after self-admin0.50.60.7-0.8-0.8-0.80.6
Bone: tissue strength2.02.02.4-1.4-1.4-1.51.3
Total heroin consumption0.40.41.50.00.00.4-1.2
Bone: trabecular number0.00.00.0-0.1-0.1-0.10.2
Bone: trabecular spacing1.92.46.2-0.7-0.7-1.62.5
Bone: trabecular thickness0.70.83.0-0.4-0.40.3-1.7
Bone: trabecular tissue density0.71.11.51.21.21.1-0.3
Water consumed over 24 hours0.40.51.30.30.30.7-1.1
Number of responses in last shaping day0.80.91.1-1.0-1.0-1.00.7