Adig

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Adig 0.27 0.11 0.0e+00 0.12 0.19 0.2 0.19 3.8e-13 3.9e-21 2.9e-21 6.2e-21
2 Liver gene expression Adig 0.37 0.19 6.3e-10 0.03 0.07 0.07 0.07 1.6e-04 6.7e-08 1.2e-08 2.9e-08
3 NAcc gene expression Adig 0.03 0.02 4.6e-03 0.01 0.01 0.01 0.01 9.4e-03 1.2e-02 7.4e-03 2.6e-03
4 Adipose mRNA stability Adig 0.17 0.08 2.2e-13 0.11 0.08 0.09 0.1 4.3e-12 2.1e-09 2.8e-10 7.8e-11

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density5.39.212.32.63.13.5-2.9
Area under the delay curve0.81.01.5-1.21.2-0.10.9
BMI with tail0.20.81.7-1.31.2-0.00.4
BMI without tail0.20.51.3-0.41.20.50.5
Body weight0.20.71.6-1.30.7-0.20.8
Weight adjusted by age0.30.41.21.10.10.20.7
Bone surface3.46.18.72.22.92.9-1.6
Bone volume4.47.911.12.63.23.3-1.9
Breakpoint value in progressive ratio session1.41.63.8-1.40.4-0.71.9
Number of licking bursts0.10.20.30.5-0.30.50.5
Context. condit. distance diff. score0.30.40.8-0.9-0.3-0.40.8
Locomotion velocity, session 10.40.40.7-0.8-0.7-0.80.2
Locomotion distance, session 12.12.74.5-1.3-2.0-2.10.6
Locomotion velocity, session 20.30.40.7-0.00.80.8-0.4
Locomotion distance, session 20.40.61.0-0.8-1.0-0.90.2
Locomotion velocity, session 30.80.91.30.41.01.1-0.9
Locomotion distance, session 30.40.50.7-0.7-0.7-0.80.4
Stereotopy head waving bouts, day 31.61.93.41.20.51.6-1.8
Stereotopy head waving duration, day 31.21.52.70.90.81.6-1.3
Locomotion velocity, session 70.30.31.2-1.1-0.0-0.30.2
Locomotion distance, session 71.01.21.9-1.4-1.0-1.20.7
Stereotopy head waving bouts, day 70.60.71.41.1-0.10.3-1.2
Stereotopy head waving duration, day 70.50.61.11.10.30.7-0.9
Locomotion velocity, session 80.40.40.60.70.80.70.1
Locomotion distance, session 80.10.10.3-0.4-0.1-0.00.5
Degree of sensitization distance0.50.51.1-0.4-1.0-0.8-0.6
Degree of sensitization stereotypy0.40.51.31.10.20.2-0.7
Conditioned locomotion0.40.41.2-0.30.20.6-1.1
Cocaine response after cond. corrected0.91.02.51.1-0.70.3-1.6
Cocaine response after cond. not corrected1.11.33.20.9-1.00.1-1.8
Cocaine response before conditioning0.50.61.1-1.0-0.6-0.90.0
Saline control response0.70.92.30.1-1.0-0.5-1.5
Bone: connectivity density4.16.48.12.22.42.7-2.8
Bone: cortical apparent density0.00.00.10.30.20.0-0.1
Bone: cortical area1.82.87.10.82.71.8-0.1
Bone: cortical porosity0.40.51.2-0.10.50.7-1.1
Bone: cortical porosity0.30.41.2-0.20.20.4-1.1
Bone: cortical thickness1.72.86.31.22.51.7-0.6
Bone: cortical thickness1.41.72.71.71.31.4-0.5
Bone: cortical tissue density0.00.00.00.1-0.0-0.20.0
Condit. Reinf. active minus inactive responses0.70.81.9-1.4-0.3-0.8-0.7
Condit. Reinf. active-inactive response ratio0.80.82.6-0.30.60.4-1.6
Condit. Reinf. active responses1.01.33.3-1.8-0.8-1.00.2
Condit. Reinf. inactive responses1.11.41.7-1.1-1.3-1.11.1
Incentive salience index mean0.30.40.7-0.70.80.4-0.4
Condit. Reinf. lever presses0.30.40.6-0.40.70.50.8
Condit. Reinf. active minus inactive responses0.30.41.2-0.6-0.1-0.3-1.1
Condit. Reinf. active-inactive response ratio0.30.41.2-1.10.2-0.3-0.5
Condit. Reinf. active responses0.30.51.6-0.3-0.3-0.3-1.3
Condit. Reinf. inactive responses0.20.30.60.8-0.10.3-0.6
Condit. Reinf. lever presses0.50.82.80.30.20.2-1.7
Condit. Reinf. lever reinforcers received0.50.62.1-0.2-0.6-0.4-1.4
Conditioned reinforcement - actives1.01.86.82.6-0.40.10.1
Conditioned reinforcement - inactives6.810.027.35.20.62.6-2.3
Conditioned locomotion1.51.94.52.10.10.8-1.6
Patch foraging indifference point 0 sec0.20.30.70.80.90.0-0.2
Patch foraging indifference point AUC0.30.41.01.00.60.6-0.1
Delay disc. indifference point, 0s delay1.51.73.30.51.61.8-0.6
Delay disc. indifference point, 16s delay0.60.71.9-1.40.7-0.4-0.3
Delay disc. indifference point, 2s delay0.50.61.9-0.11.40.6-0.2
Delay disc. indifference point, 24s delay1.61.84.4-1.30.7-0.92.1
Delay disc. indifference point, 4s delay0.50.51.2-0.50.7-0.31.1
Delay disc. indifference point, 8s delay1.01.23.1-1.21.80.20.5
Indifference point function ln k0.50.92.6-0.80.7-0.01.6
Indifference point function log k0.50.92.6-0.80.7-0.01.6
Patch foraging total patch changes 0 sec0.20.30.90.71.00.0-0.0
Patch foraging total patch changes 12 sec1.21.63.11.81.41.0-0.5
Patch foraging total patch changes 18 sec0.30.40.80.90.20.3-0.9
Patch foraging total patch changes 24 sec0.10.20.5-0.4-0.5-0.70.0
Patch foraging total patch changes 6 sec1.01.62.41.31.51.2-0.9
Patch foraging time to switch 0 sec0.10.20.30.50.30.5-0.3
Patch foraging water rate 0 sec0.30.71.6-0.11.30.80.7
Patch foraging water rate 12 sec0.51.02.3-1.5-0.6-0.5-1.0
Patch foraging water rate 18 sec1.21.93.2-0.71.61.21.8
Patch foraging water rate 24 sec0.50.72.2-0.20.60.61.5
Patch foraging water rate 6 sec0.50.81.7-0.21.31.1-0.4
Seeking ratio, delayed vs. immediate footshock0.50.61.6-1.30.1-0.20.9
Distance traveled before self-admin0.10.10.4-0.30.6-0.1-0.2
Distance traveled after self-admin0.40.51.4-1.20.3-0.5-0.4
Extensor digitorum longus weight0.10.30.6-0.80.6-0.30.4
Bone: elastic displacement0.40.51.00.2-0.9-1.00.2
Bone: elastic work0.30.40.80.60.90.30.5
Bone: endosteal estimation0.20.40.80.10.90.90.2
Bone: endosteal perimeter0.20.30.7-0.70.40.10.9
Epididymis fat weight0.00.10.20.4-0.10.20.3
Delta time in closed arm before/after self-admin2.62.44.22.11.51.5-1.1
Delta time in open arm before/after self-admin0.60.61.5-1.2-0.4-0.4-0.7
Diff in mean of infusions in LGA sessions1.21.52.4-0.7-1.5-1.11.3
Delay discount exponential model param1.11.21.71.3-1.10.4-1.3
Extinction: sum of active levers before priming0.60.72.0-0.1-1.40.2-0.8
Active lever presses in extinction session 60.40.40.7-0.6-0.6-0.90.3
Bone: final force1.21.95.10.32.31.60.3
Bone: final moment0.81.33.70.11.91.20.1
Food consumed during 24 hour testing period0.40.51.4-0.3-0.4-0.5-1.2
Glucose0.81.21.81.31.31.2-0.1
Heart weight0.60.92.30.5-1.5-0.1-1.1
Delay discount hyperbolic model param1.01.11.51.2-1.10.4-1.2
Intermittent access intake day 1-15 change0.71.42.61.60.61.6-0.6
Intermittent access intake escalation0.71.52.61.60.71.6-0.8
Intermittent access intake escalation 20.91.12.31.10.61.5-0.6
Intermitt. access day 1 inactive lever presses1.03.67.92.81.31.7-1.4
Intermitt. access day 15 inactive lever presses1.73.66.82.60.31.9-2.0
Intermitt. access escalation Index1.21.72.8-1.7-0.6-1.11.5
Intermittent access day 1 total infusions0.40.61.61.2-0.50.4-0.5
Intermittent access day 15 total infusions0.50.71.61.3-0.01.0-0.5
Intermittent access terminal intake (last 3 days)0.81.12.21.5-0.31.1-1.0
Intermittent access total infusions0.60.71.51.2-0.80.7-0.6
Intermittent access day 1 locomotion0.30.40.7-0.8-0.8-0.60.0
Intermittent access day 15 total locomotion0.20.41.51.20.20.0-0.5
Intermittent access total locomotion0.00.10.20.4-0.1-0.2-0.1
Intermittent access standard deviation1.22.44.12.01.11.9-1.0
Left kidney weight0.31.22.8-1.3-0.5-0.5-1.7
Right kidney weight0.41.75.0-0.31.00.9-2.2
Cocaine induced anxiety0.40.62.4-1.5-0.3-0.2-0.2
Post-drug Anxiety1.31.44.5-2.10.4-0.30.8
Baseline Anxiety0.80.91.7-1.30.1-0.61.2
Tail length0.10.20.60.10.40.30.8
Length with tail0.10.51.1-0.6-0.4-0.71.0
Length without tail0.51.52.4-1.3-1.3-1.60.4
Times rat made contact with spout0.30.41.4-0.30.10.01.2
Lifetime Intake2.02.45.62.4-0.21.6-1.3
Liver weight, left0.30.40.80.30.50.9-0.8
Liver weight, right0.61.02.70.11.60.80.7
Locomotor activity0.71.11.40.71.21.1-1.1
Locomotor testing distance0.50.91.30.91.20.8-0.8
Locomotor testing rearing0.10.20.4-0.20.7-0.30.4
Locomotion in novel chamber1.11.41.81.21.21.31.0
Locomotion in novel chamber post-restriction0.30.41.10.01.00.5-0.6
Fecal boli incidents, locomotor time 11.82.63.11.41.71.5-1.8
Change in fecal boli incidents, locomotor task2.62.64.2-2.0-1.3-1.71.3
Time >=10cm from walls, locomotor time 10.30.30.8-0.90.00.2-0.5
Bouts of movement, locomotor time 10.91.03.01.70.70.5-0.3
Total resting periods, locomotor time 10.50.62.01.40.60.2-0.2
Rest time, locomotor task time 11.92.33.71.60.61.6-1.9
Distance moved, locomotor task time 10.60.81.6-1.30.7-0.51.0
Vertical activity count, locomotor time 10.30.71.2-0.9-0.4-1.10.7
Time >=10cm from walls, locomotor time 20.40.61.9-1.4-0.4-0.40.4
Bouts of movement, locomotor time 20.71.12.3-1.50.3-0.81.1
Total resting periods, locomotor time 20.40.81.9-1.40.3-0.60.8
Rest time, locomotor task time 20.10.20.30.4-0.30.6-0.4
Distance moved, locomotor task time 20.30.30.9-0.51.00.00.2
Vertical activity count, locomotor time 20.30.41.3-1.10.1-0.40.2
Light reinforcement 10.40.91.31.11.01.1-0.4
Light reinforcement 20.20.40.90.7-0.20.11.0
Bone: marrow area0.30.61.20.21.11.00.2
Bone: maximum diameter0.91.73.80.11.91.21.2
Bone: maximum force2.23.910.00.53.22.3-0.2
Bone: maximum moment1.73.07.90.32.82.0-0.4
Mean time between licks in bursts0.82.03.1-1.6-1.8-1.40.6
Mean num. licks in bursts0.10.20.4-0.60.2-0.5-0.1
Cd content in liver0.60.71.2-1.1-0.7-0.6-0.8
Co content in liver1.41.62.71.01.61.5-0.7
Cu content in liver1.82.23.01.51.31.4-1.7
Fe content in liver1.61.92.3-1.5-1.2-1.4-1.4
K content in liver4.14.05.62.12.42.4-0.6
Mg content in liver5.35.46.52.52.32.5-1.9
Mn content in liver0.40.41.01.0-0.6-0.4-0.5
Na content in liver0.70.81.80.51.11.30.1
Rb content in liver0.81.01.61.31.01.0-0.6
Se content in liver2.83.35.6-1.7-2.4-2.1-0.1
Sr content in liver0.40.31.0-1.00.0-0.20.6
Zn content in liver3.64.05.91.52.02.4-2.0
Bone: minimum diameter0.40.82.0-0.31.40.90.6
Time in familiar zone, hab. session 10.50.51.00.10.81.00.4
Time in novel zone, hab. session 11.71.73.0-1.4-1.3-1.7-0.1
Total zone transitions, hab. session 10.10.20.3-0.5-0.5-0.40.0
Total locomotion distance, hab. session 10.10.10.3-0.3-0.2-0.10.5
Locomotion velocity, hab. session 10.10.10.50.1-0.20.10.7
Time in familiar zone, hab. session 20.30.30.9-0.5-0.3-0.10.9
Time in novel zone, hab. session 20.30.30.8-0.7-0.3-0.9-0.2
Total zone transitions, hab. session 20.70.91.91.40.80.7-0.7
Total locomotion distance, hab. session 20.91.21.91.41.21.1-0.6
Locomotion velocity, hab. session 21.21.62.51.61.31.3-0.6
Novel to familiar place preference ratio1.82.04.80.62.21.60.3
Novelty place preference2.12.35.80.42.41.60.7
Time in novel zone, NPP test1.51.64.40.22.11.30.6
Total zone transitions, NPP test0.20.30.50.60.20.2-0.7
Total locomotion distance, NPP test0.00.00.0-0.2-0.00.00.0
Locomotion velocity, NPP test0.20.20.50.20.70.7-0.1
Intraocular pressure1.62.34.1-1.2-1.8-2.0-0.8
Delta distance traveled before/after self-admin0.80.91.9-1.4-0.5-1.10.3
Delta ambulatory time before/after self-admin0.10.10.3-0.50.3-0.2-0.1
Parametrial fat weight1.43.39.0-1.7-0.7-0.93.0
Pavlov. Cond. lever latency0.20.20.50.1-0.7-0.3-0.5
Pavlov. Cond. magazine entry latency0.40.51.4-1.20.60.30.3
Pavlov. Cond. change in total contacts0.50.61.50.11.20.90.1
Pavlov. Cond. index score0.40.51.2-0.31.10.80.2
Pavlov. Cond. latency score0.30.40.9-0.20.90.70.2
Pavlov. Cond. lever contacts0.10.10.2-0.10.40.20.2
Pavlov. Cond. magazine entry number0.40.50.90.9-0.8-0.4-0.5
Pavlov. Cond. intertrial magazine entries1.21.52.1-0.9-1.3-1.51.1
Pavlov. Cond. lever-magazine prob. diff.0.80.92.2-0.11.51.20.2
Pavlov. Cond. response bias0.30.30.6-0.70.80.50.2
Pavlov. Cond. lever latency0.40.61.4-0.2-1.2-0.50.8
Pavlov. Cond. magazine entry latency0.60.71.50.80.50.5-1.2
Pavlov. Cond. change in total contacts0.10.10.30.5-0.2-0.3-0.2
Pavlov. Cond. index score0.20.30.80.40.40.2-0.9
Pavlov. Cond. latency score0.20.20.40.40.50.3-0.7
Pavlov. Cond. lever contacts0.40.50.90.20.90.4-1.0
Pavlov. Cond. magazine entry number0.30.30.8-0.9-0.4-0.40.3
Pavlov. Cond. intertrial magazine entries0.71.01.8-1.3-1.0-0.7-0.8
Pavlov. Cond. lever-magazine prob. diff.0.20.30.70.60.30.2-0.9
Pavlov. Cond. response bias0.40.51.00.31.00.5-0.9
Time in closed arm before self-admin0.40.51.0-0.81.00.60.3
Time in closed arm after self-admin1.92.03.21.81.71.4-0.2
Time in open arm before self-admin1.61.72.4-1.3-1.6-1.60.6
Time in open arm after self-admin2.42.66.0-2.4-1.2-1.60.7
Bone: periosteal estimation0.91.94.70.52.21.60.4
Bone: periosteal perimeter0.61.12.70.01.71.10.6
Bone: post-yield work1.21.73.60.31.91.6-0.9
Progressive ratio test 1 active lever presses0.60.71.01.0-0.90.5-0.9
Progressive ratio test 1 breakpoint0.60.71.01.0-1.00.5-0.9
Progressive ratio test 1 inactive lever presses3.04.38.83.01.21.7-1.9
Progressive ratio test 2 active lever presses0.70.81.51.2-1.00.2-0.8
Progressive ratio test 2 breakpoint0.70.81.31.1-1.10.2-0.7
Progressive ratio test 2 inactive lever presses1.01.64.32.1-0.80.9-0.9
Incentive Sensitization - Responses0.50.72.31.5-0.5-0.1-0.5
Incentive Sensitization - Breakpoint0.50.62.01.4-0.4-0.1-0.5
Sum of active levers in priming session hrs 5-62.82.63.8-1.1-1.6-2.01.6
Progressive ratio0.20.20.5-0.0-0.20.7-0.7
Food seeking constrained by brief footshock0.50.61.2-0.51.00.1-1.1
Seeking ratio, punishment vs. effort0.20.31.0-0.3-0.2-1.00.2
Retroperitoneal fat weight0.62.78.1-1.3-0.6-0.82.8
Reaction time number correct0.10.30.60.40.80.4-0.3
Reaction time mean minus median2.25.48.1-2.3-2.5-2.91.5
Reaction time mean minus median AUC2.05.17.4-2.4-2.0-2.71.8
Reaction time num false alarms0.10.20.30.6-0.3-0.1-0.5
Reaction time num false alarms AUC0.10.10.20.4-0.5-0.0-0.4
Reaction time trials correct on left0.10.30.60.40.80.4-0.3
Reaction time trials on left0.10.20.60.30.80.3-0.3
Reaction time mean3.75.810.0-2.1-3.2-2.81.0
Reaction time mean AUC3.75.98.4-2.4-2.9-2.81.3
Median of all reaction times3.14.48.7-1.7-3.0-2.40.5
Reaction time omissions0.20.40.9-0.70.0-1.00.1
Reaction time false alarm rate0.30.41.30.1-1.1-0.5-0.1
Reaction time premature initiation rate0.30.51.01.00.60.10.7
Reaction time premature initiations0.30.61.10.91.00.30.6
Std. dev. reaction times2.64.97.5-1.9-2.7-2.71.2
Reaction time trials completed0.10.20.60.30.80.3-0.3
Reaction time trials AUC0.10.20.50.30.70.3-0.5
Run reversals in cocaine runway, females1.01.02.01.11.40.9-0.4
Run reversals in cocaine runway, males0.20.20.30.50.40.60.2
Latency to leave start box in cocaine runway2.62.95.3-1.5-2.3-1.90.5
Latency to leave start box in cocaine runway, F1.31.44.0-0.4-2.0-1.20.5
Latency to leave start box in cocaine runway, M1.71.62.7-1.6-1.0-1.60.1
Std. dev. time between licks in bursts1.01.44.5-0.11.00.42.1
Total sessions with >9 infusions2.73.37.32.70.51.8-1.5
Short access day 1 total inactive lever presses4.25.57.92.81.22.3-2.7
Short access day 10 total inactive lever presses1.23.06.82.61.31.2-1.4
Short access day 1 total infusions3.74.910.23.20.42.1-2.3
Short access day 10 total infusions2.93.79.13.00.21.8-1.5
Short access total infusions3.95.010.73.30.32.3-2.0
Short access day 1 locomotion0.60.72.50.4-0.20.3-1.6
Short access day 10 total locomotion0.40.71.20.81.10.9-0.4
Short access total locomotion0.20.20.30.40.30.6-0.5
One hour access (0.3 mA shock)0.91.11.61.2-0.80.7-1.3
Compulsive drug intake0.70.82.3-0.91.50.40.1
One hour access (shock baseline)0.71.12.11.4-1.40.3-0.7
Social response proportion0.30.40.60.0-0.6-0.8-0.7
Social responses0.40.51.60.40.3-0.2-1.3
Social time0.50.71.1-0.8-1.0-0.90.7
Soleus weight0.20.61.00.71.00.8-0.4
Bone: stiffness1.42.34.90.62.22.0-0.2
Tibialis anterior weight0.10.40.8-0.60.60.2-0.9
Time to tail flick, vehicle, before self-admin2.62.75.0-0.8-2.2-1.91.3
Time to tail flick, vehicle, after self-admin1.11.53.0-1.0-0.6-1.21.7
Time to tail flick, test, before self-admin0.40.40.80.70.90.4-0.6
Time to tail flick, test, after self-admin1.31.42.71.60.71.3-0.8
Delta time to tail flick, vehicle, before/after SA0.60.61.01.00.90.6-0.3
Delta time to tail flick, test, before/after SA0.30.30.70.6-0.10.8-0.2
Tibia length0.20.50.90.3-0.7-0.7-1.0
Ambulatory time before self-admin0.00.10.2-0.10.50.10.0
Ambulatory time after self-admin0.60.81.7-1.30.9-0.30.7
Bone: tissue strength0.30.31.0-0.00.3-0.0-1.0
Total heroin consumption2.93.37.5-2.70.7-1.22.0
Bone: trabecular number2.84.66.61.72.02.3-2.6
Bone: trabecular spacing3.95.26.8-2.2-2.2-2.62.1
Bone: trabecular thickness1.21.52.11.21.31.4-1.0
Bone: trabecular tissue density0.40.62.1-1.40.1-0.20.4
Water consumed over 24 hours0.30.41.1-0.50.70.11.0
Number of responses in last shaping day1.61.83.31.80.81.7-0.7