Adig

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Adig 0.27 0.11 0.0e+00 0.12 0.19 0.2 0.19 3.8e-13 3.9e-21 3.0e-21 6.4e-21
2 Liver gene expression Adig 0.37 0.19 6.3e-10 0.03 0.07 0.07 0.07 1.6e-04 6.7e-08 1.2e-08 2.9e-08
3 NAcc gene expression Adig 0.03 0.02 4.6e-03 0.01 0.01 0.01 0.01 9.4e-03 1.2e-02 7.4e-03 2.5e-03
4 Adipose mRNA stability Adig 0.17 0.08 2.2e-13 0.11 0.08 0.09 0.1 4.3e-12 2.1e-09 2.7e-10 7.9e-11

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density5.09.212.3-2.6-3.13.52.9
Area under the delay curve0.60.91.51.2-1.2-0.1-0.9
BMI with tail0.20.81.71.3-1.1-0.0-0.4
BMI without tail0.10.51.30.4-1.10.5-0.5
Body weight0.20.71.61.3-0.7-0.2-0.8
Weight adjusted by age0.10.41.2-1.1-0.10.2-0.7
Bone surface3.16.28.7-2.2-3.02.91.6
Bone volume4.08.011.2-2.6-3.23.31.9
Breakpoint value in progressive ratio session0.91.63.81.5-0.4-0.7-1.9
Number of licking bursts0.10.20.3-0.50.30.5-0.5
Context. condit. distance diff. score0.30.40.80.90.3-0.4-0.8
Locomotion velocity, session 10.40.40.70.80.7-0.8-0.2
Locomotion distance, session 12.12.74.51.32.0-2.1-0.6
Locomotion velocity, session 20.30.40.70.0-0.80.80.4
Locomotion distance, session 20.40.61.00.81.0-0.9-0.2
Locomotion velocity, session 30.80.91.3-0.4-1.01.10.9
Locomotion distance, session 30.40.50.70.70.7-0.8-0.4
Stereotopy head waving bouts, day 31.61.93.4-1.2-0.51.61.8
Stereotopy head waving duration, day 31.21.52.7-0.9-0.81.61.3
Locomotion velocity, session 70.30.31.21.10.1-0.3-0.2
Locomotion distance, session 71.01.21.91.41.0-1.2-0.7
Stereotopy head waving bouts, day 70.60.71.4-1.10.10.31.2
Stereotopy head waving duration, day 70.50.71.2-1.1-0.40.70.9
Locomotion velocity, session 80.40.40.6-0.7-0.80.7-0.1
Locomotion distance, session 80.10.10.30.40.1-0.0-0.5
Degree of sensitization distance0.50.51.10.41.0-0.80.6
Degree of sensitization stereotypy0.40.51.3-1.2-0.30.20.7
Conditioned locomotion0.40.41.20.3-0.20.61.1
Cocaine response after cond. corrected0.71.02.5-1.10.70.31.6
Cocaine response after cond. not corrected0.91.23.2-0.91.00.11.8
Cocaine response before conditioning0.50.61.01.00.6-0.9-0.0
Saline control response0.70.92.3-0.11.0-0.51.5
Bone: connectivity density4.16.58.1-2.2-2.42.72.8
Bone: cortical apparent density0.00.00.1-0.3-0.20.00.1
Bone: cortical area1.72.87.1-0.8-2.71.80.1
Bone: cortical porosity0.40.51.20.1-0.50.71.1
Bone: cortical porosity0.30.41.20.2-0.20.41.1
Bone: cortical thickness1.72.86.3-1.2-2.51.70.6
Bone: cortical thickness1.41.72.7-1.7-1.31.40.5
Bone: cortical tissue density0.00.00.0-0.10.0-0.2-0.0
Condit. Reinf. active minus inactive responses0.70.81.81.30.3-0.80.7
Condit. Reinf. active-inactive response ratio0.80.82.60.3-0.60.41.6
Condit. Reinf. active responses1.01.33.31.80.8-1.0-0.2
Condit. Reinf. inactive responses1.11.41.71.11.3-1.1-1.1
Incentive salience index mean0.30.40.70.7-0.80.40.4
Condit. Reinf. lever presses0.20.40.60.4-0.70.5-0.8
Condit. Reinf. active minus inactive responses0.30.41.20.60.1-0.31.1
Condit. Reinf. active-inactive response ratio0.20.41.21.1-0.1-0.30.5
Condit. Reinf. active responses0.30.51.60.30.3-0.31.3
Condit. Reinf. inactive responses0.20.30.7-0.80.00.30.6
Condit. Reinf. lever presses0.50.82.8-0.4-0.20.21.7
Condit. Reinf. lever reinforcers received0.50.62.10.20.6-0.41.4
Conditioned reinforcement - actives0.41.76.7-2.60.40.1-0.1
Conditioned reinforcement - inactives3.710.027.3-5.2-0.72.62.3
Conditioned locomotion1.31.94.5-2.1-0.10.81.6
Patch foraging indifference point 0 sec0.10.30.7-0.8-0.80.00.2
Patch foraging indifference point AUC0.20.41.0-1.0-0.60.60.1
Delay disc. indifference point, 0s delay1.51.73.3-0.5-1.61.80.6
Delay disc. indifference point, 16s delay0.50.61.91.4-0.7-0.40.3
Delay disc. indifference point, 2s delay0.50.61.80.1-1.40.60.2
Delay disc. indifference point, 24s delay1.11.84.41.3-0.7-0.9-2.1
Delay disc. indifference point, 4s delay0.50.51.20.5-0.7-0.3-1.1
Delay disc. indifference point, 8s delay0.71.23.11.2-1.70.2-0.5
Indifference point function ln k0.30.92.60.8-0.6-0.0-1.6
Indifference point function log k0.30.92.60.8-0.6-0.0-1.6
Patch foraging total patch changes 0 sec0.10.30.9-0.7-0.90.00.0
Patch foraging total patch changes 12 sec1.21.63.1-1.8-1.41.00.5
Patch foraging total patch changes 18 sec0.20.40.8-0.9-0.20.30.9
Patch foraging total patch changes 24 sec0.10.20.50.40.5-0.7-0.0
Patch foraging total patch changes 6 sec0.91.62.4-1.3-1.51.20.9
Patch foraging time to switch 0 sec0.00.20.2-0.5-0.30.50.3
Patch foraging water rate 0 sec0.20.71.60.1-1.30.8-0.7
Patch foraging water rate 12 sec0.21.02.31.50.6-0.51.0
Patch foraging water rate 18 sec0.81.93.20.7-1.51.2-1.8
Patch foraging water rate 24 sec0.50.72.20.2-0.60.5-1.5
Patch foraging water rate 6 sec0.50.81.70.1-1.31.10.4
Seeking ratio, delayed vs. immediate footshock0.40.61.61.3-0.1-0.2-0.9
Distance traveled before self-admin0.10.10.40.3-0.6-0.10.2
Distance traveled after self-admin0.30.51.41.2-0.3-0.50.4
Extensor digitorum longus weight0.10.30.60.8-0.6-0.3-0.4
Bone: elastic displacement0.40.51.0-0.20.9-1.0-0.2
Bone: elastic work0.30.40.8-0.6-0.90.3-0.5
Bone: endosteal estimation0.20.40.8-0.1-0.90.9-0.2
Bone: endosteal perimeter0.10.30.70.7-0.30.1-0.9
Epididymis fat weight0.00.10.2-0.40.10.2-0.3
Delta time in closed arm before/after self-admin2.62.54.3-2.1-1.51.51.1
Delta time in open arm before/after self-admin0.50.61.51.20.4-0.40.7
Diff in mean of infusions in LGA sessions0.81.52.40.71.5-1.1-1.3
Delay discount exponential model param0.91.21.7-1.31.10.41.3
Extinction: sum of active levers before priming0.40.61.90.11.40.20.8
Active lever presses in extinction session 60.40.40.70.60.6-0.9-0.3
Bone: final force1.21.95.0-0.3-2.21.6-0.3
Bone: final moment0.81.33.7-0.1-1.91.2-0.1
Food consumed during 24 hour testing period0.20.51.40.30.4-0.51.2
Glucose0.81.21.8-1.3-1.31.20.1
Heart weight0.60.92.3-0.51.5-0.11.1
Delay discount hyperbolic model param0.81.11.5-1.21.10.41.2
Intermittent access intake day 1-15 change0.31.52.6-1.6-0.61.60.6
Intermittent access intake escalation0.31.52.6-1.6-0.71.60.8
Intermittent access intake escalation 20.61.12.3-1.1-0.61.50.6
Intermitt. access day 1 inactive lever presses0.33.68.0-2.8-1.31.71.4
Intermitt. access day 15 inactive lever presses0.73.66.9-2.6-0.31.92.0
Intermitt. access escalation Index0.51.72.91.70.6-1.1-1.5
Intermittent access day 1 total infusions0.20.61.6-1.30.50.40.5
Intermittent access day 15 total infusions0.30.71.6-1.30.01.00.5
Intermittent access terminal intake (last 3 days)0.61.12.2-1.50.31.11.0
Intermittent access total infusions0.60.71.5-1.20.80.70.6
Intermittent access day 1 locomotion0.20.40.70.90.8-0.6-0.0
Intermittent access day 15 total locomotion0.10.41.4-1.2-0.20.00.5
Intermittent access total locomotion0.00.10.2-0.40.1-0.10.1
Intermittent access standard deviation0.52.44.1-2.0-1.11.91.0
Left kidney weight0.21.22.81.20.5-0.51.7
Right kidney weight0.21.75.00.3-1.00.92.2
Cocaine induced anxiety0.20.62.31.50.3-0.20.2
Post-drug Anxiety1.21.44.52.1-0.4-0.3-0.8
Baseline Anxiety0.50.91.71.3-0.0-0.6-1.2
Tail length0.00.20.6-0.1-0.40.3-0.8
Length with tail0.10.51.10.70.4-0.7-1.0
Length without tail0.31.42.41.31.3-1.6-0.4
Times rat made contact with spout0.30.41.40.3-0.10.0-1.2
Lifetime Intake2.02.45.5-2.40.21.61.3
Liver weight, left0.30.40.8-0.3-0.50.90.8
Liver weight, right0.50.92.6-0.1-1.60.8-0.7
Locomotor activity0.71.11.5-0.7-1.21.11.1
Locomotor testing distance0.40.91.4-0.9-1.20.80.8
Locomotor testing rearing0.10.20.40.2-0.7-0.3-0.4
Locomotion in novel chamber1.11.41.8-1.2-1.21.3-1.0
Locomotion in novel chamber post-restriction0.10.41.1-0.1-1.00.50.6
Fecal boli incidents, locomotor time 11.02.73.1-1.4-1.81.51.8
Change in fecal boli incidents, locomotor task2.52.64.32.11.3-1.7-1.3
Time >=10cm from walls, locomotor time 10.20.30.80.9-0.00.20.5
Bouts of movement, locomotor time 10.81.03.0-1.7-0.70.50.3
Total resting periods, locomotor time 10.50.61.9-1.4-0.60.20.2
Rest time, locomotor task time 11.52.43.7-1.6-0.61.61.9
Distance moved, locomotor task time 10.30.81.61.2-0.7-0.5-1.0
Vertical activity count, locomotor time 10.10.71.20.90.5-1.1-0.7
Time >=10cm from walls, locomotor time 20.20.61.91.40.4-0.4-0.4
Bouts of movement, locomotor time 20.31.12.31.5-0.2-0.8-1.1
Total resting periods, locomotor time 20.20.81.91.4-0.3-0.6-0.8
Rest time, locomotor task time 20.10.20.3-0.40.20.60.4
Distance moved, locomotor task time 20.20.30.80.5-0.90.0-0.2
Vertical activity count, locomotor time 20.20.41.21.1-0.1-0.4-0.2
Light reinforcement 10.20.91.3-1.1-1.01.10.4
Light reinforcement 20.20.40.9-0.70.20.1-1.0
Bone: marrow area0.20.61.1-0.2-1.11.0-0.2
Bone: maximum diameter0.81.73.7-0.1-1.91.2-1.2
Bone: maximum force2.03.99.9-0.5-3.22.30.2
Bone: maximum moment1.63.07.9-0.3-2.82.00.4
Mean time between licks in bursts0.32.03.11.61.8-1.4-0.6
Mean num. licks in bursts0.10.20.40.6-0.2-0.50.1
Cd content in liver0.60.71.11.10.7-0.60.8
Co content in liver1.41.62.7-1.0-1.61.50.7
Cu content in liver1.82.23.0-1.5-1.31.41.7
Fe content in liver1.51.92.21.51.2-1.41.4
K content in liver4.14.05.6-2.1-2.42.40.6
Mg content in liver5.05.56.5-2.6-2.42.51.9
Mn content in liver0.40.41.0-1.00.6-0.40.5
Na content in liver0.70.81.8-0.5-1.11.3-0.1
Rb content in liver0.81.01.6-1.3-1.01.00.6
Se content in liver2.73.25.61.72.4-2.10.1
Sr content in liver0.40.31.01.0-0.0-0.2-0.6
Zn content in liver3.54.05.9-1.5-2.02.42.0
Bone: minimum diameter0.40.81.90.3-1.40.9-0.6
Time in familiar zone, hab. session 10.40.51.0-0.1-0.81.0-0.4
Time in novel zone, hab. session 11.51.73.01.41.3-1.70.1
Total zone transitions, hab. session 10.10.20.30.50.5-0.4-0.0
Total locomotion distance, hab. session 10.10.10.30.30.2-0.1-0.5
Locomotion velocity, hab. session 10.10.10.5-0.10.10.1-0.7
Time in familiar zone, hab. session 20.30.30.90.50.3-0.1-0.9
Time in novel zone, hab. session 20.30.30.80.70.3-0.90.2
Total zone transitions, hab. session 20.70.91.9-1.4-0.80.70.7
Total locomotion distance, hab. session 20.91.21.9-1.4-1.21.10.6
Locomotion velocity, hab. session 21.21.62.5-1.6-1.31.30.6
Novel to familiar place preference ratio1.51.94.8-0.6-2.21.6-0.3
Novelty place preference1.72.25.7-0.4-2.41.6-0.7
Time in novel zone, NPP test1.31.64.4-0.2-2.11.3-0.6
Total zone transitions, NPP test0.20.30.5-0.7-0.20.20.7
Total locomotion distance, NPP test0.00.00.00.20.00.0-0.0
Locomotion velocity, NPP test0.20.20.5-0.2-0.70.70.1
Intraocular pressure1.42.34.11.21.8-2.00.8
Delta distance traveled before/after self-admin0.80.91.91.40.6-1.1-0.3
Delta ambulatory time before/after self-admin0.10.10.30.5-0.3-0.20.1
Parametrial fat weight1.43.39.01.70.7-0.9-3.0
Pavlov. Cond. lever latency0.20.20.4-0.10.7-0.30.5
Pavlov. Cond. magazine entry latency0.40.51.41.2-0.60.3-0.3
Pavlov. Cond. change in total contacts0.50.61.5-0.1-1.20.9-0.1
Pavlov. Cond. index score0.40.51.10.3-1.10.8-0.2
Pavlov. Cond. latency score0.30.30.80.2-0.90.7-0.2
Pavlov. Cond. lever contacts0.10.10.20.1-0.40.2-0.2
Pavlov. Cond. magazine entry number0.40.50.9-0.90.8-0.40.5
Pavlov. Cond. intertrial magazine entries1.21.52.10.91.3-1.5-1.1
Pavlov. Cond. lever-magazine prob. diff.0.70.92.20.1-1.51.2-0.2
Pavlov. Cond. response bias0.30.30.60.7-0.80.5-0.2
Pavlov. Cond. lever latency0.40.61.40.21.2-0.5-0.8
Pavlov. Cond. magazine entry latency0.50.71.5-0.8-0.50.51.2
Pavlov. Cond. change in total contacts0.00.10.3-0.50.2-0.30.2
Pavlov. Cond. index score0.20.30.8-0.4-0.40.20.9
Pavlov. Cond. latency score0.10.20.4-0.4-0.50.30.7
Pavlov. Cond. lever contacts0.30.50.9-0.2-0.90.41.0
Pavlov. Cond. magazine entry number0.20.30.80.90.4-0.4-0.3
Pavlov. Cond. intertrial magazine entries0.41.01.81.31.0-0.70.8
Pavlov. Cond. lever-magazine prob. diff.0.20.30.7-0.6-0.30.20.9
Pavlov. Cond. response bias0.40.51.0-0.4-1.00.50.9
Time in closed arm before self-admin0.30.51.00.8-1.00.6-0.3
Time in closed arm after self-admin1.82.03.2-1.8-1.71.40.2
Time in open arm before self-admin1.41.72.51.31.6-1.6-0.6
Time in open arm after self-admin2.42.66.12.51.2-1.6-0.7
Bone: periosteal estimation0.81.94.6-0.5-2.21.6-0.4
Bone: periosteal perimeter0.51.12.7-0.0-1.61.1-0.6
Bone: post-yield work1.01.73.6-0.3-1.91.60.9
Progressive ratio test 1 active lever presses0.40.71.0-1.00.90.50.9
Progressive ratio test 1 breakpoint0.40.71.0-1.01.00.50.9
Progressive ratio test 1 inactive lever presses1.64.38.9-3.0-1.31.71.9
Progressive ratio test 2 active lever presses0.60.81.5-1.21.00.20.8
Progressive ratio test 2 breakpoint0.60.71.3-1.11.00.20.7
Progressive ratio test 2 inactive lever presses0.51.64.3-2.10.70.90.9
Incentive Sensitization - Responses0.30.72.3-1.50.5-0.10.5
Incentive Sensitization - Breakpoint0.30.62.0-1.40.4-0.10.5
Sum of active levers in priming session hrs 5-62.82.63.81.21.6-2.0-1.6
Progressive ratio0.10.20.5-0.00.10.70.7
Food seeking constrained by brief footshock0.50.61.20.5-1.00.11.1
Seeking ratio, punishment vs. effort0.10.30.90.30.2-1.0-0.2
Retroperitoneal fat weight0.62.78.11.30.6-0.8-2.8
Reaction time number correct0.10.30.6-0.4-0.80.40.3
Reaction time mean minus median0.85.48.12.32.5-2.9-1.5
Reaction time mean minus median AUC0.85.27.52.42.0-2.7-1.8
Reaction time num false alarms0.10.20.4-0.60.3-0.10.5
Reaction time num false alarms AUC0.10.10.2-0.40.5-0.00.4
Reaction time trials correct on left0.10.30.6-0.4-0.80.40.3
Reaction time trials on left0.10.20.6-0.3-0.80.30.3
Reaction time mean2.65.810.02.13.2-2.8-1.0
Reaction time mean AUC2.45.98.42.42.9-2.8-1.3
Median of all reaction times2.84.48.71.72.9-2.4-0.5
Reaction time omissions0.20.40.90.70.0-1.0-0.1
Reaction time false alarm rate0.30.41.2-0.11.1-0.50.1
Reaction time premature initiation rate0.30.41.0-1.0-0.60.1-0.7
Reaction time premature initiations0.20.61.0-0.9-1.00.3-0.6
Std. dev. reaction times1.54.97.51.92.7-2.7-1.2
Reaction time trials completed0.10.20.6-0.3-0.80.30.3
Reaction time trials AUC0.10.20.5-0.3-0.70.30.5
Run reversals in cocaine runway, females0.91.02.0-1.1-1.40.90.4
Run reversals in cocaine runway, males0.20.20.3-0.5-0.40.6-0.2
Latency to leave start box in cocaine runway2.12.95.31.52.3-1.9-0.5
Latency to leave start box in cocaine runway, F1.11.44.00.42.0-1.2-0.5
Latency to leave start box in cocaine runway, M1.61.62.71.61.0-1.6-0.1
Std. dev. time between licks in bursts0.71.44.50.2-1.00.4-2.1
Total sessions with >9 infusions2.73.37.3-2.7-0.61.81.5
Short access day 1 total inactive lever presses2.85.68.0-2.8-1.22.32.7
Short access day 10 total inactive lever presses0.43.06.9-2.6-1.31.21.4
Short access day 1 total infusions2.55.010.3-3.2-0.42.12.3
Short access day 10 total infusions2.23.79.0-3.0-0.31.81.5
Short access total infusions3.65.010.7-3.3-0.42.32.0
Short access day 1 locomotion0.40.72.5-0.40.20.31.6
Short access day 10 total locomotion0.20.71.2-0.8-1.10.90.4
Short access total locomotion0.10.20.3-0.4-0.30.60.5
One hour access (0.3 mA shock)0.91.11.6-1.20.70.71.3
Compulsive drug intake0.50.82.20.9-1.50.4-0.1
One hour access (shock baseline)0.41.12.0-1.41.40.30.7
Social response proportion0.30.40.6-0.00.6-0.80.7
Social responses0.40.51.6-0.4-0.3-0.21.3
Social time0.50.71.10.81.1-0.9-0.7
Soleus weight0.20.61.0-0.7-1.00.80.4
Bone: stiffness1.32.34.9-0.6-2.22.00.2
Tibialis anterior weight0.10.40.80.6-0.60.20.9
Time to tail flick, vehicle, before self-admin2.22.75.10.82.3-1.9-1.3
Time to tail flick, vehicle, after self-admin0.71.53.01.00.6-1.2-1.7
Time to tail flick, test, before self-admin0.40.40.8-0.7-0.90.40.6
Time to tail flick, test, after self-admin1.31.42.7-1.6-0.71.30.8
Delta time to tail flick, vehicle, before/after SA0.60.61.1-1.0-0.90.60.3
Delta time to tail flick, test, before/after SA0.20.30.7-0.60.10.80.2
Tibia length0.20.50.9-0.30.7-0.71.0
Ambulatory time before self-admin0.00.10.20.1-0.50.1-0.0
Ambulatory time after self-admin0.50.71.61.3-0.9-0.3-0.7
Bone: tissue strength0.30.31.0-0.0-0.30.01.0
Total heroin consumption2.83.47.62.8-0.6-1.2-2.0
Bone: trabecular number2.54.76.6-1.7-2.02.32.6
Bone: trabecular spacing3.65.26.92.22.3-2.6-2.1
Bone: trabecular thickness1.11.62.1-1.2-1.31.41.0
Bone: trabecular tissue density0.30.62.11.4-0.1-0.2-0.4
Water consumed over 24 hours0.20.41.10.5-0.70.1-1.0
Number of responses in last shaping day1.41.83.3-1.8-0.81.70.7