Adh7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Adh7 0.55 0.11 0.0e+00 0.4 0.39 0.39 0.4 3.0e-47 2.6e-46 1.5e-46 1.1e-47
2 Adipose gene expression Adh7 0.56 0.13 0.0e+00 0.36 0.36 0.39 0.38 1.7e-41 2.3e-42 1.6e-45 3.5e-44
3 Liver mRNA stability Adh7 0.18 0.07 0.0e+00 0.21 0.2 0.2 0.21 3.7e-23 5.8e-22 3.5e-22 1.9e-22

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.50.70.8-0.8-0.1
Area under the delay curve0.20.20.30.4-0.50.3
BMI with tail1.34.47.1-2.71.3-2.1
BMI without tail1.75.29.1-3.01.8-1.8
Body weight1.77.212.3-3.52.1-2.3
Weight adjusted by age0.00.00.10.1-0.3-0.2
Bone surface0.10.10.30.5-0.20.3
Bone volume0.10.10.20.30.20.5
Breakpoint value in progressive ratio session0.91.12.0-0.2-1.1-1.4
Number of licking bursts0.40.61.6-0.0-0.6-1.3
Context. condit. distance diff. score1.11.32.10.9-1.4-1.0
Locomotion velocity, session 11.41.52.5-1.41.60.2
Locomotion distance, session 10.20.30.5-0.70.5-0.3
Locomotion velocity, session 20.00.00.0-0.1-0.1-0.2
Locomotion distance, session 20.30.40.5-0.70.70.5
Locomotion velocity, session 30.91.02.3-0.71.50.5
Locomotion distance, session 30.00.00.00.2-0.1-0.0
Stereotopy head waving bouts, day 31.21.42.6-1.11.60.5
Stereotopy head waving duration, day 31.31.52.7-1.41.60.0
Locomotion velocity, session 70.40.40.7-0.70.1-0.9
Locomotion distance, session 71.21.52.40.2-1.4-1.6
Stereotopy head waving bouts, day 72.83.14.9-0.42.22.1
Stereotopy head waving duration, day 73.34.06.2-0.42.52.4
Locomotion velocity, session 80.00.00.00.1-0.2-0.1
Locomotion distance, session 80.30.51.1-0.2-0.6-1.1
Degree of sensitization distance1.61.72.80.1-1.5-1.7
Degree of sensitization stereotypy2.52.74.2-0.32.02.0
Conditioned locomotion1.01.22.70.20.91.6
Cocaine response after cond. corrected0.10.10.2-0.30.50.1
Cocaine response after cond. not corrected0.00.00.1-0.1-0.2-0.2
Cocaine response before conditioning0.10.10.3-0.1-0.5-0.4
Saline control response1.11.42.1-0.41.41.5
Bone: connectivity density1.32.13.21.7-1.8-0.1
Bone: cortical apparent density0.20.20.5-0.4-0.2-0.7
Bone: cortical area1.01.62.2-1.51.0-1.2
Bone: cortical porosity0.80.91.6-1.01.30.1
Bone: cortical porosity1.41.52.5-1.41.60.1
Bone: cortical thickness0.91.62.3-1.40.7-1.5
Bone: cortical thickness1.11.32.4-1.60.8-1.0
Bone: cortical tissue density0.20.20.5-0.4-0.2-0.7
Condit. Reinf. active minus inactive responses0.80.91.4-1.20.8-0.9
Condit. Reinf. active-inactive response ratio2.52.74.2-2.01.2-1.6
Condit. Reinf. active responses0.20.20.4-0.50.6-0.0
Condit. Reinf. inactive responses0.81.02.30.90.21.5
Incentive salience index mean0.60.71.0-1.00.6-1.0
Condit. Reinf. lever presses0.00.10.2-0.00.4-0.1
Condit. Reinf. active minus inactive responses0.10.20.4-0.30.6-0.0
Condit. Reinf. active-inactive response ratio0.10.10.3-0.20.2-0.6
Condit. Reinf. active responses0.20.30.5-0.70.6-0.3
Condit. Reinf. inactive responses0.30.40.8-0.90.6-0.1
Condit. Reinf. lever presses0.30.41.1-0.5-0.1-1.0
Condit. Reinf. lever reinforcers received0.20.20.3-0.60.4-0.4
Conditioned reinforcement - actives1.22.14.30.81.12.1
Conditioned reinforcement - inactives0.40.61.20.70.31.1
Conditioned locomotion2.53.35.52.3-0.81.9
Patch foraging indifference point 0 sec0.91.62.41.5-1.50.0
Patch foraging indifference point AUC0.30.41.1-0.3-0.4-1.0
Delay disc. indifference point, 0s delay1.41.52.81.7-0.81.0
Delay disc. indifference point, 16s delay0.00.10.10.0-0.3-0.2
Delay disc. indifference point, 2s delay1.51.72.81.5-0.11.7
Delay disc. indifference point, 24s delay0.30.30.60.8-0.50.4
Delay disc. indifference point, 4s delay0.50.51.20.3-1.1-0.5
Delay disc. indifference point, 8s delay0.20.30.4-0.40.40.7
Indifference point function ln k0.10.10.2-0.50.2-0.3
Indifference point function log k0.10.10.2-0.50.2-0.3
Patch foraging total patch changes 0 sec0.81.52.41.4-1.6-0.2
Patch foraging total patch changes 12 sec0.60.81.20.3-1.0-1.1
Patch foraging total patch changes 18 sec0.81.22.00.9-1.4-0.9
Patch foraging total patch changes 24 sec0.00.00.10.20.10.2
Patch foraging total patch changes 6 sec2.33.45.21.0-2.3-2.0
Patch foraging time to switch 0 sec0.30.71.30.90.21.1
Patch foraging water rate 0 sec0.20.51.1-0.5-0.3-1.1
Patch foraging water rate 12 sec0.91.83.3-1.81.2-0.8
Patch foraging water rate 18 sec1.01.53.3-1.0-0.3-1.8
Patch foraging water rate 24 sec0.81.12.4-0.8-0.4-1.6
Patch foraging water rate 6 sec3.44.97.8-2.80.5-2.6
Seeking ratio, delayed vs. immediate footshock1.31.52.51.6-1.30.7
Distance traveled before self-admin0.30.40.80.20.70.9
Distance traveled after self-admin0.10.10.20.4-0.30.1
Extensor digitorum longus weight4.417.526.3-5.15.1-0.6
Bone: elastic displacement0.70.81.2-1.10.9-0.6
Bone: elastic work1.62.13.1-1.81.0-1.5
Bone: endosteal estimation0.10.10.2-0.30.50.2
Bone: endosteal perimeter0.30.51.2-0.51.10.4
Epididymis fat weight0.31.11.8-1.30.8-0.9
Delta time in closed arm before/after self-admin0.60.50.9-0.50.90.7
Delta time in open arm before/after self-admin2.32.33.40.01.81.8
Diff in mean of infusions in LGA sessions2.63.25.90.4-2.4-1.9
Delay discount exponential model param0.20.20.4-0.40.6-0.2
Extinction: sum of active levers before priming0.80.92.0-0.8-0.3-1.4
Active lever presses in extinction session 62.12.13.91.5-2.0-0.3
Bone: final force0.30.51.2-0.60.2-1.1
Bone: final moment0.40.61.4-0.60.1-1.2
Food consumed during 24 hour testing period1.11.52.8-1.70.7-1.1
Glucose1.52.44.4-1.6-0.3-2.1
Heart weight0.91.32.1-1.41.4-0.1
Delay discount hyperbolic model param0.20.30.4-0.50.6-0.3
Intermittent access intake day 1-15 change0.30.50.90.6-0.51.0
Intermittent access intake escalation0.51.01.31.1-1.00.8
Intermittent access intake escalation 20.50.61.10.7-1.00.3
Intermitt. access day 1 inactive lever presses0.10.30.5-0.70.1-0.5
Intermitt. access day 15 inactive lever presses0.51.01.7-1.31.1-0.1
Intermitt. access escalation Index0.71.02.2-0.61.50.6
Intermittent access day 1 total infusions1.11.82.5-1.60.7-1.6
Intermittent access day 15 total infusions0.30.51.0-0.6-0.3-1.0
Intermittent access terminal intake (last 3 days)0.50.61.2-0.8-0.1-1.1
Intermittent access total infusions1.01.22.1-1.20.2-1.5
Intermittent access day 1 locomotion0.50.60.9-0.80.5-1.0
Intermittent access day 15 total locomotion0.30.50.80.9-0.90.1
Intermittent access total locomotion0.10.20.4-0.0-0.2-0.7
Intermittent access standard deviation0.00.10.1-0.2-0.2-0.3
Left kidney weight0.83.76.3-2.51.4-1.7
Right kidney weight0.73.25.4-2.31.7-1.1
Cocaine induced anxiety0.10.20.30.6-0.40.0
Post-drug Anxiety0.40.40.80.9-0.40.4
Baseline Anxiety0.20.20.5-0.70.5-0.2
Tail length0.20.81.6-0.91.20.3
Length with tail0.41.93.2-1.81.3-0.9
Length without tail0.10.20.4-0.60.5-0.4
Times rat made contact with spout1.21.42.6-0.1-1.3-1.6
Lifetime Intake0.70.81.2-1.10.4-1.1
Liver weight, left0.10.10.20.00.40.3
Liver weight, right0.10.20.60.2-0.1-0.8
Locomotor activity0.30.40.7-0.3-0.8-0.8
Locomotor testing distance0.30.60.9-0.9-0.4-0.8
Locomotor testing rearing2.55.110.3-1.3-1.9-3.2
Locomotion in novel chamber3.44.36.62.5-2.60.2
Locomotion in novel chamber post-restriction0.10.10.2-0.3-0.50.0
Fecal boli incidents, locomotor time 10.30.51.00.10.61.0
Change in fecal boli incidents, locomotor task1.81.73.4-1.0-0.9-1.9
Time >=10cm from walls, locomotor time 12.82.95.41.1-2.3-1.5
Bouts of movement, locomotor time 10.40.50.90.1-0.7-1.0
Total resting periods, locomotor time 10.20.20.5-0.1-0.4-0.7
Rest time, locomotor task time 10.91.21.8-0.31.31.3
Distance moved, locomotor task time 10.50.71.5-0.2-0.8-1.2
Vertical activity count, locomotor time 10.30.60.90.5-1.0-0.8
Time >=10cm from walls, locomotor time 20.71.01.7-1.31.10.1
Bouts of movement, locomotor time 20.71.11.51.2-1.20.5
Total resting periods, locomotor time 20.61.11.51.2-1.20.4
Rest time, locomotor task time 20.10.20.30.5-0.10.6
Distance moved, locomotor task time 20.00.00.00.10.00.2
Vertical activity count, locomotor time 20.00.00.10.20.10.3
Light reinforcement 10.51.32.5-1.60.4-1.1
Light reinforcement 20.10.10.3-0.50.2-0.0
Bone: marrow area0.00.10.1-0.20.40.2
Bone: maximum diameter0.10.20.2-0.50.4-0.5
Bone: maximum force0.10.20.5-0.40.2-0.7
Bone: maximum moment0.20.30.8-0.40.0-0.9
Mean time between licks in bursts0.20.61.10.3-0.7-1.1
Mean num. licks in bursts0.00.00.1-0.2-0.30.0
Cd content in liver0.70.71.9-0.2-0.5-1.4
Co content in liver1.82.13.7-1.91.6-0.5
Cu content in liver2.02.34.21.5-2.0-0.8
Fe content in liver1.82.14.21.20.82.1
K content in liver1.41.42.61.2-1.6-0.3
Mg content in liver1.01.01.90.7-1.4-0.8
Mn content in liver0.80.91.9-0.4-0.9-1.4
Na content in liver0.20.30.40.6-0.60.1
Rb content in liver0.30.30.40.50.60.7
Se content in liver0.10.10.30.30.20.5
Sr content in liver0.20.20.5-0.70.2-0.3
Zn content in liver22.224.644.35.1-6.7-2.0
Bone: minimum diameter1.83.25.3-2.31.8-1.0
Time in familiar zone, hab. session 10.60.61.40.40.51.2
Time in novel zone, hab. session 10.00.00.0-0.10.1-0.1
Total zone transitions, hab. session 11.21.72.9-0.91.71.1
Total locomotion distance, hab. session 10.10.20.40.20.30.6
Locomotion velocity, hab. session 10.00.00.0-0.1-0.0-0.1
Time in familiar zone, hab. session 20.30.30.5-0.7-0.1-0.7
Time in novel zone, hab. session 20.40.40.91.0-0.20.6
Total zone transitions, hab. session 20.30.40.7-0.60.80.3
Total locomotion distance, hab. session 20.20.20.4-0.5-0.2-0.7
Locomotion velocity, hab. session 20.10.10.2-0.2-0.3-0.5
Novel to familiar place preference ratio0.20.30.4-0.2-0.6-0.6
Novelty place preference0.40.40.8-0.3-0.7-0.9
Time in novel zone, NPP test0.40.50.9-0.3-0.7-0.9
Total zone transitions, NPP test0.60.91.6-1.30.9-0.6
Total locomotion distance, NPP test0.40.51.4-0.2-0.5-1.2
Locomotion velocity, NPP test0.60.82.1-0.4-0.6-1.4
Intraocular pressure0.71.12.40.30.81.5
Delta distance traveled before/after self-admin0.40.40.60.1-0.8-0.8
Delta ambulatory time before/after self-admin0.60.81.20.1-1.1-1.1
Parametrial fat weight0.20.40.90.6-0.9-0.1
Pavlov. Cond. lever latency0.81.02.0-1.40.9-0.5
Pavlov. Cond. magazine entry latency0.30.40.6-0.00.70.8
Pavlov. Cond. change in total contacts0.30.30.70.8-0.40.4
Pavlov. Cond. index score0.30.40.70.8-0.60.2
Pavlov. Cond. latency score0.50.61.21.1-0.80.3
Pavlov. Cond. lever contacts0.40.51.01.0-0.8-0.0
Pavlov. Cond. magazine entry number0.30.40.70.3-0.8-0.5
Pavlov. Cond. intertrial magazine entries0.20.20.50.7-0.40.2
Pavlov. Cond. lever-magazine prob. diff.0.30.40.70.7-0.8-0.1
Pavlov. Cond. response bias0.20.30.50.40.40.7
Pavlov. Cond. lever latency0.50.70.90.9-0.70.8
Pavlov. Cond. magazine entry latency0.10.20.30.40.20.6
Pavlov. Cond. change in total contacts0.10.20.6-0.0-0.3-0.8
Pavlov. Cond. index score0.00.00.10.20.30.2
Pavlov. Cond. latency score0.10.10.40.6-0.10.2
Pavlov. Cond. lever contacts0.60.91.2-1.11.0-0.6
Pavlov. Cond. magazine entry number0.10.20.3-0.4-0.3-0.5
Pavlov. Cond. intertrial magazine entries0.30.40.9-0.7-0.1-0.9
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.30.20.2
Pavlov. Cond. response bias0.91.22.0-1.21.4-0.2
Time in closed arm before self-admin0.40.50.80.6-0.9-0.4
Time in closed arm after self-admin1.01.11.90.9-1.4-0.8
Time in open arm before self-admin1.41.52.9-1.2-0.4-1.7
Time in open arm after self-admin1.11.32.5-0.51.61.0
Bone: periosteal estimation0.51.11.8-1.41.1-0.6
Bone: periosteal perimeter0.81.42.6-1.31.60.1
Bone: post-yield work1.21.73.21.8-0.81.1
Progressive ratio test 1 active lever presses2.02.44.6-2.11.2-1.2
Progressive ratio test 1 breakpoint1.82.34.2-2.01.0-1.3
Progressive ratio test 1 inactive lever presses0.30.51.0-1.00.4-0.5
Progressive ratio test 2 active lever presses1.61.93.4-1.91.4-0.5
Progressive ratio test 2 breakpoint1.51.73.2-1.81.2-0.7
Progressive ratio test 2 inactive lever presses0.50.81.7-0.51.30.7
Incentive Sensitization - Responses0.60.92.00.60.51.4
Incentive Sensitization - Breakpoint0.50.71.60.50.51.3
Sum of active levers in priming session hrs 5-62.22.13.70.4-1.9-1.5
Progressive ratio0.40.71.3-0.81.10.3
Food seeking constrained by brief footshock1.01.21.8-1.30.3-1.3
Seeking ratio, punishment vs. effort0.60.91.3-0.1-1.1-1.2
Retroperitoneal fat weight0.31.22.1-1.50.5-1.2
Reaction time number correct0.10.30.5-0.70.0-0.5
Reaction time mean minus median0.40.91.90.60.61.4
Reaction time mean minus median AUC0.20.51.00.60.41.0
Reaction time num false alarms1.82.55.20.11.52.3
Reaction time num false alarms AUC2.23.45.7-0.22.12.4
Reaction time trials correct on left0.10.30.5-0.70.0-0.5
Reaction time trials on left0.10.20.4-0.60.0-0.4
Reaction time mean0.10.20.4-0.30.60.4
Reaction time mean AUC0.20.30.6-0.60.80.3
Median of all reaction times0.20.30.6-0.80.6-0.1
Reaction time omissions1.42.04.11.30.32.0
Reaction time false alarm rate1.72.34.60.31.52.1
Reaction time premature initiation rate1.21.62.9-1.31.70.3
Reaction time premature initiations1.32.43.9-1.72.00.3
Std. dev. reaction times0.61.02.01.00.31.4
Reaction time trials completed0.10.20.4-0.60.0-0.4
Reaction time trials AUC0.10.20.5-0.70.1-0.5
Run reversals in cocaine runway, females0.50.50.8-0.1-0.9-0.9
Run reversals in cocaine runway, males1.01.01.4-1.2-0.5-1.1
Latency to leave start box in cocaine runway1.21.43.00.7-1.7-0.8
Latency to leave start box in cocaine runway, F0.30.30.60.6-0.8-0.2
Latency to leave start box in cocaine runway, M2.22.14.40.6-2.1-1.2
Std. dev. time between licks in bursts0.81.11.70.6-1.3-1.0
Total sessions with >9 infusions0.10.10.1-0.40.3-0.2
Short access day 1 total inactive lever presses0.40.51.2-0.1-0.5-1.1
Short access day 10 total inactive lever presses0.51.22.21.5-0.61.1
Short access day 1 total infusions0.20.30.40.30.50.7
Short access day 10 total infusions0.50.60.9-1.00.0-0.9
Short access total infusions0.30.40.6-0.80.3-0.7
Short access day 1 locomotion0.10.10.20.5-0.2-0.0
Short access day 10 total locomotion0.30.50.80.3-0.8-0.9
Short access total locomotion0.50.61.00.6-1.0-0.7
One hour access (0.3 mA shock)0.20.20.4-0.3-0.3-0.6
Compulsive drug intake0.10.10.3-0.2-0.2-0.6
One hour access (shock baseline)0.20.30.5-0.70.2-0.6
Social response proportion0.50.61.10.9-0.11.0
Social responses0.50.71.20.1-1.1-0.9
Social time1.01.32.61.6-0.80.9
Soleus weight0.92.64.2-1.92.00.1
Bone: stiffness0.30.51.0-0.70.0-1.0
Tibialis anterior weight5.418.330.4-5.54.8-1.2
Time to tail flick, vehicle, before self-admin0.70.81.40.90.21.2
Time to tail flick, vehicle, after self-admin1.41.93.71.00.91.9
Time to tail flick, test, before self-admin0.70.71.01.00.01.0
Time to tail flick, test, after self-admin0.10.10.20.40.30.2
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.10.30.2
Delta time to tail flick, test, before/after SA0.30.40.6-0.80.4-0.6
Tibia length0.72.03.4-1.81.5-0.5
Ambulatory time before self-admin0.30.50.80.20.80.9
Ambulatory time after self-admin0.60.71.31.2-0.20.8
Bone: tissue strength0.30.30.9-0.2-0.3-0.9
Total heroin consumption0.10.10.10.2-0.4-0.3
Bone: trabecular number0.91.42.31.4-0.11.5
Bone: trabecular spacing1.31.73.5-0.4-1.2-1.9
Bone: trabecular thickness0.30.40.6-0.30.70.6
Bone: trabecular tissue density0.20.30.4-0.60.70.3
Water consumed over 24 hours0.20.20.5-0.50.1-0.7
Number of responses in last shaping day1.92.14.2-0.92.11.1