Adh1c

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Adh1c 0.13 0.06 5.3e-11 0.06 0.06 0.06 0.07 1.0e-06 1.2e-07 1.9e-07 3.0e-08
2 Eye gene expression Adh1c 0.46 0.18 2.5e-03 0.12 0.02 0.06 0.08 6.9e-03 1.4e-01 5.0e-02 2.5e-02
3 Liver gene expression Adh1c 0.46 0.13 0.0e+00 0.32 0.31 0.31 0.32 8.7e-36 4.4e-35 7.6e-35 6.6e-36
4 Liver mRNA stability Adh1c 0.1 0.05 4.1e-08 0.06 0.06 0.06 0.06 1.4e-07 3.1e-07 6.7e-07 2.8e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.92.5-1.2-1.61.21.4
Area under the delay curve0.10.10.2-0.3-0.20.40.3
BMI with tail0.62.13.82.01.0-1.3-1.3
BMI without tail0.62.95.52.30.9-1.5-1.8
Body weight1.25.18.22.91.7-2.2-2.1
Weight adjusted by age0.00.00.1-0.00.10.10.2
Bone surface0.40.81.3-0.7-1.10.71.0
Bone volume0.20.41.0-0.4-1.00.30.6
Breakpoint value in progressive ratio session0.20.40.8-0.5-0.20.70.9
Number of licking bursts0.10.30.9-0.11.0-0.10.4
Context. condit. distance diff. score0.70.81.2-1.1-0.31.01.0
Locomotion velocity, session 12.52.83.81.81.9-1.5-1.4
Locomotion distance, session 11.72.24.71.32.2-1.2-1.0
Locomotion velocity, session 20.10.10.20.10.30.20.5
Locomotion distance, session 22.33.36.71.62.6-1.4-1.3
Locomotion velocity, session 33.03.55.81.52.4-1.9-1.5
Locomotion distance, session 30.10.20.60.00.8-0.10.1
Stereotopy head waving bouts, day 31.92.32.41.41.6-1.6-1.5
Stereotopy head waving duration, day 32.12.63.01.61.7-1.7-1.4
Locomotion velocity, session 70.50.61.20.71.1-0.5-0.7
Locomotion distance, session 70.20.30.3-0.30.60.60.6
Stereotopy head waving bouts, day 71.82.13.01.11.2-1.6-1.7
Stereotopy head waving duration, day 72.53.14.11.41.6-2.0-2.0
Locomotion velocity, session 80.10.10.30.20.6-0.1-0.3
Locomotion distance, session 80.81.24.10.72.0-0.5-0.2
Degree of sensitization distance0.70.71.2-0.7-0.71.10.9
Degree of sensitization stereotypy1.01.12.10.80.6-1.2-1.4
Conditioned locomotion0.20.20.5-0.0-0.70.0-0.5
Cocaine response after cond. corrected0.00.00.10.2-0.3-0.1-0.2
Cocaine response after cond. not corrected0.30.51.2-0.3-1.10.70.3
Cocaine response before conditioning0.20.20.5-0.3-0.50.70.3
Saline control response1.92.73.11.31.8-1.7-1.8
Bone: connectivity density2.74.25.8-2.0-1.82.02.4
Bone: cortical apparent density0.00.10.20.20.4-0.0-0.1
Bone: cortical area0.30.50.91.0-0.0-0.8-0.6
Bone: cortical porosity1.21.41.71.30.9-1.2-1.2
Bone: cortical porosity1.92.12.81.71.1-1.5-1.5
Bone: cortical thickness0.20.30.50.7-0.3-0.6-0.3
Bone: cortical thickness0.40.51.01.0-0.7-0.4-0.6
Bone: cortical tissue density0.10.10.30.20.5-0.1-0.1
Condit. Reinf. active minus inactive responses2.32.64.31.52.1-1.4-1.4
Condit. Reinf. active-inactive response ratio4.04.36.02.12.4-1.9-1.7
Condit. Reinf. active responses1.01.32.40.91.5-0.8-1.1
Condit. Reinf. inactive responses0.20.20.4-0.7-0.60.5-0.1
Incentive salience index mean1.01.22.01.11.4-0.9-1.0
Condit. Reinf. lever presses0.10.10.10.10.3-0.3-0.4
Condit. Reinf. active minus inactive responses0.00.10.20.1-0.5-0.2-0.1
Condit. Reinf. active-inactive response ratio0.00.00.1-0.1-0.3-0.00.2
Condit. Reinf. active responses0.10.10.20.4-0.5-0.2-0.1
Condit. Reinf. inactive responses0.20.40.80.90.4-0.6-0.5
Condit. Reinf. lever presses0.20.30.9-0.1-0.90.40.3
Condit. Reinf. lever reinforcers received0.10.10.40.2-0.7-0.00.0
Conditioned reinforcement - actives0.52.24.80.42.2-1.6-1.1
Conditioned reinforcement - inactives0.00.00.1-0.20.2-0.2-0.3
Conditioned locomotion0.71.12.6-1.6-0.50.71.1
Patch foraging indifference point 0 sec0.51.32.0-1.4-0.31.11.4
Patch foraging indifference point AUC0.00.00.1-0.1-0.20.20.1
Delay disc. indifference point, 0s delay0.70.81.6-1.3-0.60.60.9
Delay disc. indifference point, 16s delay0.00.00.20.10.4-0.00.1
Delay disc. indifference point, 2s delay0.50.61.3-1.1-0.70.50.4
Delay disc. indifference point, 24s delay0.50.71.1-0.8-1.10.80.7
Delay disc. indifference point, 4s delay0.70.71.1-0.7-0.81.00.8
Delay disc. indifference point, 8s delay0.50.91.10.91.0-0.8-1.0
Indifference point function ln k0.20.61.50.81.2-0.6-0.4
Indifference point function log k0.20.61.50.81.2-0.6-0.4
Patch foraging total patch changes 0 sec0.41.21.8-1.3-0.21.11.3
Patch foraging total patch changes 12 sec0.40.50.7-0.6-0.60.70.8
Patch foraging total patch changes 18 sec0.30.71.4-1.0-0.10.81.2
Patch foraging total patch changes 24 sec0.10.51.40.11.2-0.6-0.4
Patch foraging total patch changes 6 sec2.03.44.3-1.9-1.42.02.1
Patch foraging time to switch 0 sec0.00.10.3-0.5-0.40.10.2
Patch foraging water rate 0 sec0.00.00.10.10.00.20.2
Patch foraging water rate 12 sec0.52.12.61.61.5-1.2-1.4
Patch foraging water rate 18 sec0.00.10.20.3-0.20.20.5
Patch foraging water rate 24 sec0.20.30.80.50.9-0.1-0.1
Patch foraging water rate 6 sec2.02.94.82.21.9-1.2-1.3
Seeking ratio, delayed vs. immediate footshock2.23.14.4-1.7-2.11.71.5
Distance traveled before self-admin0.00.10.30.1-0.1-0.5-0.2
Distance traveled after self-admin0.00.10.1-0.20.40.00.2
Extensor digitorum longus weight4.718.826.15.12.8-4.6-4.5
Bone: elastic displacement0.50.60.80.90.4-0.8-0.9
Bone: elastic work0.60.81.41.20.2-0.9-0.9
Bone: endosteal estimation0.00.10.20.40.2-0.4-0.3
Bone: endosteal perimeter0.40.91.20.90.8-1.1-1.1
Epididymis fat weight0.21.31.31.21.1-1.1-1.1
Delta time in closed arm before/after self-admin1.91.83.01.11.7-1.3-1.2
Delta time in open arm before/after self-admin1.92.33.10.91.5-1.8-1.7
Diff in mean of infusions in LGA sessions1.62.84.3-1.4-1.22.11.9
Delay discount exponential model param0.10.20.30.40.3-0.5-0.3
Extinction: sum of active levers before priming0.20.40.6-0.0-0.80.60.6
Active lever presses in extinction session 61.92.02.7-1.6-0.61.51.6
Bone: final force0.10.10.10.30.1-0.3-0.4
Bone: final moment0.00.00.10.2-0.1-0.1-0.2
Food consumed during 24 hour testing period0.51.02.31.50.8-0.9-0.6
Glucose0.10.20.60.80.00.1-0.5
Heart weight0.71.11.71.30.5-1.2-1.0
Delay discount hyperbolic model param0.20.20.30.50.4-0.6-0.4
Intermittent access intake day 1-15 change0.10.30.5-0.3-0.70.30.7
Intermittent access intake escalation0.21.31.8-0.9-1.30.91.3
Intermittent access intake escalation 20.71.21.9-0.8-1.40.81.3
Intermitt. access day 1 inactive lever presses0.00.20.50.70.3-0.2-0.4
Intermitt. access day 15 inactive lever presses0.20.91.71.30.4-0.9-1.0
Intermitt. access escalation Index0.20.61.00.70.0-0.9-1.0
Intermittent access day 1 total infusions0.31.01.31.11.1-0.6-1.0
Intermittent access day 15 total infusions0.00.10.20.2-0.20.20.4
Intermittent access terminal intake (last 3 days)0.10.20.40.60.6-0.30.0
Intermittent access total infusions0.50.61.00.91.0-0.5-0.4
Intermittent access day 1 locomotion0.20.30.60.60.8-0.5-0.5
Intermittent access day 15 total locomotion0.20.81.2-0.9-0.80.71.1
Intermittent access total locomotion0.10.10.2-0.2-0.20.20.5
Intermittent access standard deviation0.00.00.10.1-0.0-0.10.3
Left kidney weight0.32.34.02.00.9-1.5-1.4
Right kidney weight0.42.84.22.11.1-1.8-1.6
Cocaine induced anxiety0.10.20.3-0.5-0.10.30.5
Post-drug Anxiety0.30.40.6-0.7-0.40.50.7
Baseline Anxiety0.10.20.40.60.1-0.4-0.3
Tail length0.10.70.90.90.5-0.9-0.9
Length with tail0.41.72.41.61.0-1.3-1.3
Length without tail0.10.50.80.70.9-0.7-0.4
Times rat made contact with spout1.11.21.8-0.7-1.01.31.3
Lifetime Intake0.70.91.71.01.3-0.7-0.7
Liver weight, left0.20.40.60.30.8-0.8-0.5
Liver weight, right0.00.10.2-0.20.4-0.20.2
Locomotor activity0.10.20.30.0-0.50.50.5
Locomotor testing distance0.00.10.40.6-0.10.2-0.0
Locomotor testing rearing0.31.22.6-0.1-0.91.61.1
Locomotion in novel chamber7.49.910.9-3.2-3.33.13.0
Locomotion in novel chamber post-restriction0.00.10.30.1-0.60.4-0.0
Fecal boli incidents, locomotor time 10.20.50.70.30.9-0.6-0.8
Change in fecal boli incidents, locomotor task0.20.20.40.2-0.60.60.4
Time >=10cm from walls, locomotor time 13.13.95.0-1.8-1.62.12.2
Bouts of movement, locomotor time 10.60.80.9-0.6-1.00.90.9
Total resting periods, locomotor time 10.20.20.3-0.3-0.50.50.5
Rest time, locomotor task time 10.30.61.00.70.3-1.0-0.8
Distance moved, locomotor task time 10.10.20.3-0.1-0.30.60.6
Vertical activity count, locomotor time 10.10.60.9-0.7-0.50.91.0
Time >=10cm from walls, locomotor time 20.82.32.41.61.5-1.5-1.5
Bouts of movement, locomotor time 20.31.11.3-1.1-1.01.11.0
Total resting periods, locomotor time 20.31.31.5-1.2-1.11.11.0
Rest time, locomotor task time 20.40.61.6-0.6-1.30.60.5
Distance moved, locomotor task time 20.20.30.80.30.9-0.5-0.2
Vertical activity count, locomotor time 20.00.00.1-0.00.3-0.2-0.0
Light reinforcement 10.31.32.21.51.3-1.0-0.7
Light reinforcement 20.00.10.30.5-0.1-0.3-0.1
Bone: marrow area0.00.10.10.30.1-0.2-0.2
Bone: maximum diameter0.00.00.10.3-0.2-0.20.1
Bone: maximum force0.00.10.20.20.3-0.4-0.1
Bone: maximum moment0.00.00.00.1-0.0-0.10.1
Mean time between licks in bursts0.00.20.6-0.40.10.30.8
Mean num. licks in bursts0.30.92.5-0.3-1.60.90.3
Cd content in liver0.00.00.1-0.20.30.20.2
Co content in liver5.15.96.42.52.5-2.5-2.2
Cu content in liver2.53.03.9-1.8-1.11.92.0
Fe content in liver0.10.10.5-0.7-0.3-0.1-0.1
K content in liver2.12.02.7-1.5-1.31.61.1
Mg content in liver0.70.81.3-1.0-0.51.20.8
Mn content in liver0.60.71.2-0.3-1.11.00.6
Na content in liver0.50.60.7-0.8-0.60.80.8
Rb content in liver0.30.41.00.11.0-0.5-0.6
Se content in liver0.00.10.1-0.2-0.30.2-0.2
Sr content in liver0.40.41.10.2-1.10.3-0.5
Zn content in liver29.534.440.1-6.3-4.76.26.0
Bone: minimum diameter1.63.14.62.11.3-1.8-1.7
Time in familiar zone, hab. session 10.30.40.70.20.8-0.8-0.4
Time in novel zone, hab. session 10.10.10.5-0.1-0.70.3-0.1
Total zone transitions, hab. session 13.95.48.62.02.9-2.3-2.0
Total locomotion distance, hab. session 10.40.61.70.51.3-0.7-0.2
Locomotion velocity, hab. session 10.20.30.90.41.0-0.4-0.0
Time in familiar zone, hab. session 20.60.72.70.1-1.60.40.2
Time in novel zone, hab. session 20.30.31.2-0.31.1-0.20.1
Total zone transitions, hab. session 21.92.45.21.32.3-1.4-1.1
Total locomotion distance, hab. session 20.10.10.30.40.60.0-0.0
Locomotion velocity, hab. session 20.10.10.30.20.60.10.1
Novel to familiar place preference ratio0.10.10.2-0.00.00.30.4
Novelty place preference0.10.10.30.0-0.20.40.5
Time in novel zone, NPP test0.10.10.30.0-0.20.50.5
Total zone transitions, NPP test1.62.34.21.52.0-1.3-1.1
Total locomotion distance, NPP test0.10.10.2-0.10.40.30.5
Locomotion velocity, NPP test0.10.10.30.00.30.40.5
Intraocular pressure0.10.20.50.1-0.0-0.7-0.6
Delta distance traveled before/after self-admin0.10.10.5-0.10.70.30.2
Delta ambulatory time before/after self-admin0.10.20.2-0.30.40.50.5
Parametrial fat weight0.20.50.6-0.8-0.60.70.7
Pavlov. Cond. lever latency0.81.11.61.30.6-0.9-1.2
Pavlov. Cond. magazine entry latency0.50.61.00.40.8-0.8-1.0
Pavlov. Cond. change in total contacts0.20.20.4-0.50.70.20.2
Pavlov. Cond. index score0.30.40.7-0.8-0.40.60.6
Pavlov. Cond. latency score0.50.71.1-1.0-0.50.80.9
Pavlov. Cond. lever contacts0.70.81.2-1.1-0.50.81.1
Pavlov. Cond. magazine entry number0.81.01.6-0.7-1.31.01.0
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.6-0.20.30.5
Pavlov. Cond. lever-magazine prob. diff.0.50.60.8-0.9-0.60.90.7
Pavlov. Cond. response bias0.20.30.80.00.9-0.5-0.3
Pavlov. Cond. lever latency0.50.71.0-1.0-0.90.80.6
Pavlov. Cond. magazine entry latency0.00.00.1-0.2-0.20.0-0.2
Pavlov. Cond. change in total contacts0.00.10.2-0.1-0.00.20.5
Pavlov. Cond. index score0.00.00.0-0.1-0.2-0.00.1
Pavlov. Cond. latency score0.10.10.2-0.5-0.30.30.4
Pavlov. Cond. lever contacts0.50.81.21.10.8-1.0-0.7
Pavlov. Cond. magazine entry number0.00.00.00.20.2-0.0-0.0
Pavlov. Cond. intertrial magazine entries0.10.30.90.1-0.90.30.5
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.2-0.30.00.2
Pavlov. Cond. response bias1.01.41.91.40.9-1.3-1.1
Time in closed arm before self-admin0.10.20.4-0.50.10.40.6
Time in closed arm after self-admin0.80.91.7-0.9-0.31.01.3
Time in open arm before self-admin0.40.51.10.2-1.00.80.4
Time in open arm after self-admin1.01.11.70.80.8-1.2-1.3
Bone: periosteal estimation0.30.71.31.10.2-0.9-0.7
Bone: periosteal perimeter0.81.62.11.40.8-1.4-1.3
Bone: post-yield work0.30.51.3-1.10.20.30.8
Progressive ratio test 1 active lever presses1.93.44.32.12.0-1.5-1.7
Progressive ratio test 1 breakpoint1.72.93.71.91.9-1.4-1.5
Progressive ratio test 1 inactive lever presses0.10.20.50.7-0.0-0.1-0.7
Progressive ratio test 2 active lever presses1.72.43.51.91.3-1.5-1.4
Progressive ratio test 2 breakpoint1.31.72.91.71.0-1.3-1.2
Progressive ratio test 2 inactive lever presses0.41.21.61.11.0-1.3-1.1
Incentive Sensitization - Responses0.00.10.2-0.1-0.2-0.40.1
Incentive Sensitization - Breakpoint0.00.10.1-0.1-0.4-0.40.1
Sum of active levers in priming session hrs 5-64.23.95.0-1.5-2.22.12.0
Progressive ratio0.10.20.40.3-0.6-0.2-0.5
Food seeking constrained by brief footshock0.10.20.50.70.2-0.3-0.2
Seeking ratio, punishment vs. effort0.10.10.20.10.50.20.4
Retroperitoneal fat weight0.10.30.60.8-0.3-0.3-0.5
Reaction time number correct0.00.10.10.4-0.40.1-0.0
Reaction time mean minus median0.00.10.3-0.3-0.5-0.2-0.3
Reaction time mean minus median AUC0.00.20.5-0.5-0.70.1-0.0
Reaction time num false alarms1.11.92.40.81.5-1.5-1.5
Reaction time num false alarms AUC1.33.03.71.21.8-1.9-1.9
Reaction time trials correct on left0.00.10.10.4-0.40.1-0.0
Reaction time trials on left0.00.10.20.3-0.40.1-0.0
Reaction time mean0.10.20.70.1-0.90.1-0.2
Reaction time mean AUC0.10.20.50.4-0.7-0.1-0.4
Median of all reaction times0.10.20.50.5-0.70.1-0.2
Reaction time omissions0.30.61.1-0.9-1.10.40.2
Reaction time false alarm rate1.11.52.00.61.4-1.4-1.4
Reaction time premature initiation rate2.33.53.61.81.9-1.9-1.9
Reaction time premature initiations1.44.14.72.21.8-2.0-2.1
Std. dev. reaction times0.10.30.8-0.7-0.90.20.1
Reaction time trials completed0.00.10.20.3-0.40.1-0.0
Reaction time trials AUC0.00.10.10.4-0.30.0-0.1
Run reversals in cocaine runway, females0.40.40.9-0.3-0.60.90.6
Run reversals in cocaine runway, males0.10.20.50.70.10.3-0.2
Latency to leave start box in cocaine runway0.81.11.8-1.0-0.51.31.1
Latency to leave start box in cocaine runway, F0.20.20.3-0.40.60.30.4
Latency to leave start box in cocaine runway, M3.23.14.2-1.4-1.82.01.7
Std. dev. time between licks in bursts0.30.51.1-0.40.80.51.0
Total sessions with >9 infusions1.31.64.20.82.1-1.0-0.9
Short access day 1 total inactive lever presses0.10.10.60.00.80.10.0
Short access day 10 total inactive lever presses0.10.61.1-1.1-0.60.70.6
Short access day 1 total infusions0.71.33.80.42.0-1.0-0.6
Short access day 10 total infusions0.50.91.90.91.4-0.5-0.8
Short access total infusions0.81.22.80.91.7-0.7-0.8
Short access day 1 locomotion0.50.82.90.11.7-0.50.1
Short access day 10 total locomotion0.10.30.7-0.4-0.30.60.8
Short access total locomotion0.20.40.7-0.60.00.70.8
One hour access (0.3 mA shock)0.10.10.20.0-0.40.30.3
Compulsive drug intake0.50.82.4-0.3-1.50.80.4
One hour access (shock baseline)0.10.30.40.70.6-0.4-0.4
Social response proportion0.20.30.5-0.7-0.50.2-0.5
Social responses0.91.21.6-0.9-1.31.30.8
Social time1.21.92.9-1.7-1.51.21.0
Soleus weight1.33.74.92.11.3-2.0-2.2
Bone: stiffness0.00.10.10.40.3-0.3-0.1
Tibialis anterior weight4.615.725.35.02.3-4.0-4.0
Time to tail flick, vehicle, before self-admin0.10.10.2-0.40.2-0.1-0.2
Time to tail flick, vehicle, after self-admin0.10.10.2-0.5-0.1-0.4-0.2
Time to tail flick, test, before self-admin0.30.40.6-0.8-0.80.40.4
Time to tail flick, test, after self-admin0.00.00.1-0.30.2-0.10.2
Delta time to tail flick, vehicle, before/after SA0.00.00.10.20.3-0.3-0.1
Delta time to tail flick, test, before/after SA0.40.50.90.70.9-0.6-0.4
Tibia length0.41.02.01.40.0-1.0-1.1
Ambulatory time before self-admin0.00.10.30.1-0.0-0.5-0.3
Ambulatory time after self-admin0.10.20.4-0.50.6-0.10.2
Bone: tissue strength0.00.00.1-0.10.4-0.00.1
Total heroin consumption0.50.61.0-0.6-1.00.60.7
Bone: trabecular number0.20.40.8-0.9-0.60.30.6
Bone: trabecular spacing0.81.21.9-0.6-1.21.40.9
Bone: trabecular thickness0.30.50.60.70.6-0.8-0.7
Bone: trabecular tissue density0.40.71.00.80.8-0.7-1.0
Water consumed over 24 hours0.00.10.20.40.4-0.20.1
Number of responses in last shaping day3.74.86.11.82.5-2.3-2.1