Adh1c

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Adh1c 0.13 0.06 5.3e-11 0.06 0.06 0.06 0.07 1.0e-06 1.2e-07 1.9e-07 3.2e-08
2 Eye gene expression Adh1c 0.46 0.18 2.5e-03 0.12 0.02 0.06 0.07 6.9e-03 1.4e-01 5.0e-02 2.8e-02
3 Liver gene expression Adh1c 0.46 0.13 0.0e+00 0.32 0.31 0.31 0.32 8.7e-36 4.4e-35 7.9e-35 6.7e-36
4 Liver mRNA stability Adh1c 0.1 0.05 4.1e-08 0.06 0.06 0.06 0.06 1.4e-07 3.1e-07 6.7e-07 2.7e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.92.5-1.21.61.2-1.4
Area under the delay curve0.10.10.2-0.30.20.4-0.3
BMI with tail0.62.13.92.0-1.0-1.31.3
BMI without tail1.03.05.52.3-0.9-1.51.8
Body weight1.25.18.32.9-1.7-2.22.1
Weight adjusted by age0.00.00.1-0.0-0.10.1-0.2
Bone surface0.40.81.3-0.71.10.7-1.0
Bone volume0.20.41.0-0.41.00.3-0.6
Breakpoint value in progressive ratio session0.30.40.8-0.40.20.7-0.9
Number of licking bursts0.20.30.9-0.1-1.0-0.1-0.4
Context. condit. distance diff. score0.70.81.2-1.10.31.0-1.0
Locomotion velocity, session 12.62.83.81.8-1.9-1.51.4
Locomotion distance, session 11.72.24.71.3-2.2-1.21.0
Locomotion velocity, session 20.10.10.20.1-0.30.2-0.5
Locomotion distance, session 22.33.36.71.6-2.6-1.41.3
Locomotion velocity, session 33.03.55.81.5-2.4-1.91.5
Locomotion distance, session 30.10.20.60.0-0.8-0.1-0.1
Stereotopy head waving bouts, day 32.02.32.41.4-1.6-1.61.5
Stereotopy head waving duration, day 32.12.63.01.6-1.7-1.71.4
Locomotion velocity, session 70.50.61.20.7-1.1-0.50.7
Locomotion distance, session 70.20.30.3-0.3-0.60.6-0.6
Stereotopy head waving bouts, day 71.82.13.01.1-1.2-1.61.7
Stereotopy head waving duration, day 72.63.14.11.4-1.6-2.02.0
Locomotion velocity, session 80.10.10.30.2-0.6-0.10.3
Locomotion distance, session 80.81.24.10.7-2.0-0.50.2
Degree of sensitization distance0.70.71.2-0.70.71.1-0.9
Degree of sensitization stereotypy1.01.12.10.8-0.6-1.21.4
Conditioned locomotion0.20.20.5-0.10.70.00.5
Cocaine response after cond. corrected0.00.00.10.20.3-0.10.2
Cocaine response after cond. not corrected0.40.51.2-0.31.10.7-0.3
Cocaine response before conditioning0.20.20.5-0.30.50.7-0.3
Saline control response2.02.73.11.3-1.8-1.71.8
Bone: connectivity density2.74.25.8-2.01.82.0-2.4
Bone: cortical apparent density0.00.10.20.2-0.4-0.00.1
Bone: cortical area0.30.50.91.00.0-0.80.6
Bone: cortical porosity1.31.41.71.3-0.9-1.21.2
Bone: cortical porosity2.02.12.71.7-1.1-1.51.5
Bone: cortical thickness0.20.30.50.70.3-0.60.3
Bone: cortical thickness0.40.51.01.00.7-0.40.6
Bone: cortical tissue density0.10.10.30.2-0.5-0.10.1
Condit. Reinf. active minus inactive responses2.32.64.31.5-2.1-1.41.4
Condit. Reinf. active-inactive response ratio4.04.36.02.2-2.4-1.91.7
Condit. Reinf. active responses1.01.32.40.9-1.5-0.81.1
Condit. Reinf. inactive responses0.20.20.4-0.70.60.50.1
Incentive salience index mean1.01.22.01.1-1.4-0.91.0
Condit. Reinf. lever presses0.10.10.10.1-0.3-0.30.4
Condit. Reinf. active minus inactive responses0.10.10.20.10.5-0.20.1
Condit. Reinf. active-inactive response ratio0.00.00.1-0.10.3-0.0-0.2
Condit. Reinf. active responses0.10.10.20.40.5-0.20.1
Condit. Reinf. inactive responses0.30.40.80.9-0.4-0.60.5
Condit. Reinf. lever presses0.20.30.9-0.10.90.4-0.3
Condit. Reinf. lever reinforcers received0.10.10.40.20.7-0.0-0.0
Conditioned reinforcement - actives1.32.24.80.4-2.2-1.61.1
Conditioned reinforcement - inactives0.00.00.1-0.2-0.2-0.20.3
Conditioned locomotion0.81.12.6-1.60.50.7-1.1
Patch foraging indifference point 0 sec0.71.32.0-1.40.31.1-1.4
Patch foraging indifference point AUC0.00.00.1-0.10.20.2-0.1
Delay disc. indifference point, 0s delay0.70.81.6-1.30.60.6-0.9
Delay disc. indifference point, 16s delay0.00.00.20.1-0.4-0.0-0.1
Delay disc. indifference point, 2s delay0.50.61.3-1.10.70.5-0.4
Delay disc. indifference point, 24s delay0.70.71.1-0.81.10.8-0.7
Delay disc. indifference point, 4s delay0.70.71.1-0.70.81.0-0.8
Delay disc. indifference point, 8s delay0.70.91.10.9-1.0-0.81.0
Indifference point function ln k0.40.61.50.8-1.2-0.60.4
Indifference point function log k0.40.61.50.8-1.2-0.60.4
Patch foraging total patch changes 0 sec0.61.21.8-1.30.21.1-1.3
Patch foraging total patch changes 12 sec0.40.50.7-0.60.60.7-0.8
Patch foraging total patch changes 18 sec0.50.71.4-1.00.10.8-1.2
Patch foraging total patch changes 24 sec0.30.51.40.1-1.2-0.60.4
Patch foraging total patch changes 6 sec2.23.44.3-1.81.42.0-2.1
Patch foraging time to switch 0 sec0.10.10.3-0.50.40.1-0.2
Patch foraging water rate 0 sec0.00.00.10.1-0.00.2-0.2
Patch foraging water rate 12 sec1.02.12.61.6-1.5-1.21.4
Patch foraging water rate 18 sec0.10.10.20.30.20.2-0.5
Patch foraging water rate 24 sec0.20.30.80.5-0.9-0.20.1
Patch foraging water rate 6 sec2.02.94.82.2-1.9-1.21.3
Seeking ratio, delayed vs. immediate footshock2.63.14.4-1.72.11.7-1.5
Distance traveled before self-admin0.10.10.30.10.1-0.50.2
Distance traveled after self-admin0.00.10.1-0.2-0.40.0-0.2
Extensor digitorum longus weight4.818.826.15.1-2.8-4.64.5
Bone: elastic displacement0.50.60.80.9-0.4-0.80.9
Bone: elastic work0.60.81.51.2-0.2-0.90.9
Bone: endosteal estimation0.10.10.20.4-0.2-0.40.3
Bone: endosteal perimeter0.40.91.20.9-0.8-1.11.1
Epididymis fat weight0.41.31.31.2-1.1-1.11.1
Delta time in closed arm before/after self-admin1.91.83.01.1-1.7-1.31.2
Delta time in open arm before/after self-admin2.32.33.10.9-1.5-1.71.7
Diff in mean of infusions in LGA sessions2.32.84.3-1.41.22.1-1.9
Delay discount exponential model param0.10.20.30.4-0.3-0.50.3
Extinction: sum of active levers before priming0.30.40.60.00.80.6-0.6
Active lever presses in extinction session 62.02.02.7-1.60.61.5-1.6
Bone: final force0.10.10.10.4-0.1-0.30.4
Bone: final moment0.00.00.10.20.1-0.10.2
Food consumed during 24 hour testing period0.71.02.31.5-0.8-0.90.6
Glucose0.10.20.60.8-0.00.10.5
Heart weight0.71.11.71.3-0.5-1.21.0
Delay discount hyperbolic model param0.20.20.30.5-0.4-0.60.4
Intermittent access intake day 1-15 change0.10.30.5-0.30.70.3-0.7
Intermittent access intake escalation0.61.31.8-0.91.30.9-1.3
Intermittent access intake escalation 21.11.21.9-0.81.40.8-1.3
Intermitt. access day 1 inactive lever presses0.00.20.50.7-0.3-0.20.4
Intermitt. access day 15 inactive lever presses0.50.91.71.3-0.4-0.91.0
Intermitt. access escalation Index0.40.61.00.7-0.0-0.91.0
Intermittent access day 1 total infusions0.61.01.31.1-1.1-0.61.0
Intermittent access day 15 total infusions0.00.10.20.20.20.2-0.4
Intermittent access terminal intake (last 3 days)0.20.20.40.6-0.6-0.3-0.0
Intermittent access total infusions0.50.61.00.9-1.0-0.50.4
Intermittent access day 1 locomotion0.30.30.60.6-0.8-0.50.5
Intermittent access day 15 total locomotion0.40.81.2-0.90.80.7-1.1
Intermittent access total locomotion0.10.10.2-0.20.20.2-0.5
Intermittent access standard deviation0.00.00.10.10.0-0.1-0.3
Left kidney weight0.52.34.02.0-0.9-1.51.4
Right kidney weight0.62.84.22.1-1.1-1.81.6
Cocaine induced anxiety0.10.20.3-0.50.10.3-0.5
Post-drug Anxiety0.30.40.6-0.70.40.5-0.7
Baseline Anxiety0.20.20.40.6-0.1-0.40.3
Tail length0.20.70.90.9-0.5-0.90.9
Length with tail0.41.72.41.6-1.0-1.31.3
Length without tail0.20.50.80.7-0.9-0.70.4
Times rat made contact with spout1.11.21.8-0.71.01.3-1.3
Lifetime Intake0.70.91.71.0-1.3-0.70.7
Liver weight, left0.20.40.60.3-0.8-0.80.5
Liver weight, right0.00.10.2-0.2-0.4-0.2-0.2
Locomotor activity0.10.20.30.00.50.5-0.5
Locomotor testing distance0.10.10.40.60.10.20.0
Locomotor testing rearing0.61.22.6-0.00.91.6-1.1
Locomotion in novel chamber7.89.910.9-3.23.33.1-3.0
Locomotion in novel chamber post-restriction0.10.10.30.10.60.40.0
Fecal boli incidents, locomotor time 10.30.50.70.3-0.9-0.60.8
Change in fecal boli incidents, locomotor task0.20.20.40.20.60.6-0.4
Time >=10cm from walls, locomotor time 13.73.95.0-1.81.62.1-2.2
Bouts of movement, locomotor time 10.70.80.9-0.61.00.9-0.9
Total resting periods, locomotor time 10.20.20.3-0.30.50.5-0.5
Rest time, locomotor task time 10.40.61.00.7-0.3-1.00.8
Distance moved, locomotor task time 10.10.20.3-0.10.30.6-0.6
Vertical activity count, locomotor time 10.20.60.9-0.70.50.9-1.0
Time >=10cm from walls, locomotor time 21.52.32.41.6-1.5-1.51.5
Bouts of movement, locomotor time 20.71.11.3-1.11.01.1-1.0
Total resting periods, locomotor time 20.71.31.5-1.21.11.1-1.0
Rest time, locomotor task time 20.50.61.6-0.61.30.6-0.5
Distance moved, locomotor task time 20.20.30.80.3-0.9-0.50.2
Vertical activity count, locomotor time 20.00.00.1-0.0-0.3-0.20.0
Light reinforcement 10.51.32.21.5-1.3-1.00.7
Light reinforcement 20.10.10.30.50.1-0.30.1
Bone: marrow area0.00.10.10.3-0.1-0.20.2
Bone: maximum diameter0.00.00.10.30.2-0.2-0.1
Bone: maximum force0.00.10.20.2-0.3-0.40.1
Bone: maximum moment0.00.00.00.10.0-0.1-0.1
Mean time between licks in bursts0.10.20.6-0.4-0.10.3-0.8
Mean num. licks in bursts0.60.92.5-0.31.60.9-0.3
Cd content in liver0.00.00.1-0.1-0.30.2-0.2
Co content in liver5.15.96.42.5-2.5-2.52.2
Cu content in liver2.53.03.9-1.81.11.9-2.0
Fe content in liver0.10.10.5-0.70.3-0.00.1
K content in liver2.12.02.7-1.51.31.6-1.1
Mg content in liver0.80.81.3-1.00.51.2-0.8
Mn content in liver0.60.71.2-0.31.11.0-0.6
Na content in liver0.50.60.7-0.80.60.8-0.8
Rb content in liver0.30.41.00.1-1.0-0.50.6
Se content in liver0.00.10.1-0.20.30.20.2
Sr content in liver0.40.41.10.21.10.30.5
Zn content in liver31.034.440.0-6.34.76.2-6.0
Bone: minimum diameter1.73.14.62.1-1.3-1.81.7
Time in familiar zone, hab. session 10.40.40.70.2-0.8-0.80.4
Time in novel zone, hab. session 10.10.10.5-0.10.70.30.1
Total zone transitions, hab. session 13.95.48.62.0-2.9-2.32.0
Total locomotion distance, hab. session 10.40.61.70.5-1.3-0.70.2
Locomotion velocity, hab. session 10.20.30.90.4-1.0-0.40.0
Time in familiar zone, hab. session 20.70.72.70.11.60.4-0.2
Time in novel zone, hab. session 20.30.31.2-0.3-1.1-0.2-0.1
Total zone transitions, hab. session 21.92.45.21.3-2.3-1.41.1
Total locomotion distance, hab. session 20.10.10.30.4-0.60.00.0
Locomotion velocity, hab. session 20.10.10.30.2-0.60.1-0.1
Novel to familiar place preference ratio0.10.10.2-0.0-0.00.3-0.4
Novelty place preference0.10.10.30.00.20.4-0.5
Time in novel zone, NPP test0.10.10.30.00.20.5-0.5
Total zone transitions, NPP test1.62.34.21.5-2.0-1.31.1
Total locomotion distance, NPP test0.10.10.2-0.1-0.40.3-0.5
Locomotion velocity, NPP test0.10.10.30.0-0.30.4-0.5
Intraocular pressure0.20.20.50.10.0-0.70.6
Delta distance traveled before/after self-admin0.10.10.5-0.1-0.70.3-0.2
Delta ambulatory time before/after self-admin0.10.20.2-0.3-0.40.5-0.5
Parametrial fat weight0.20.50.6-0.80.60.7-0.7
Pavlov. Cond. lever latency0.91.11.61.3-0.6-0.91.2
Pavlov. Cond. magazine entry latency0.40.61.00.4-0.8-0.71.0
Pavlov. Cond. change in total contacts0.20.20.4-0.5-0.70.2-0.2
Pavlov. Cond. index score0.30.40.7-0.80.40.6-0.6
Pavlov. Cond. latency score0.60.71.1-1.00.50.8-0.9
Pavlov. Cond. lever contacts0.70.81.2-1.10.50.8-1.1
Pavlov. Cond. magazine entry number0.81.01.6-0.71.31.0-1.0
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.60.20.3-0.5
Pavlov. Cond. lever-magazine prob. diff.0.50.60.8-0.90.60.9-0.7
Pavlov. Cond. response bias0.20.30.80.0-0.9-0.50.3
Pavlov. Cond. lever latency0.50.71.0-1.00.90.8-0.6
Pavlov. Cond. magazine entry latency0.00.00.1-0.20.20.00.2
Pavlov. Cond. change in total contacts0.00.10.2-0.10.00.2-0.5
Pavlov. Cond. index score0.00.00.0-0.10.2-0.0-0.1
Pavlov. Cond. latency score0.10.10.2-0.50.30.3-0.4
Pavlov. Cond. lever contacts0.60.81.21.1-0.8-1.00.7
Pavlov. Cond. magazine entry number0.00.00.00.2-0.2-0.00.0
Pavlov. Cond. intertrial magazine entries0.20.30.90.10.90.3-0.5
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.20.30.0-0.2
Pavlov. Cond. response bias1.01.41.91.4-0.9-1.31.1
Time in closed arm before self-admin0.20.20.4-0.5-0.10.4-0.6
Time in closed arm after self-admin0.80.91.7-0.90.31.0-1.3
Time in open arm before self-admin0.40.51.10.21.00.8-0.4
Time in open arm after self-admin1.01.11.70.8-0.8-1.21.3
Bone: periosteal estimation0.30.71.31.1-0.2-0.90.7
Bone: periosteal perimeter0.91.62.11.4-0.8-1.41.3
Bone: post-yield work0.40.51.3-1.1-0.20.3-0.8
Progressive ratio test 1 active lever presses2.73.44.42.1-2.0-1.51.7
Progressive ratio test 1 breakpoint2.42.93.81.9-1.9-1.41.5
Progressive ratio test 1 inactive lever presses0.20.20.50.70.0-0.10.7
Progressive ratio test 2 active lever presses2.02.43.51.9-1.3-1.61.4
Progressive ratio test 2 breakpoint1.51.72.91.7-1.0-1.31.2
Progressive ratio test 2 inactive lever presses0.81.21.61.1-1.0-1.31.1
Incentive Sensitization - Responses0.00.10.2-0.10.2-0.4-0.1
Incentive Sensitization - Breakpoint0.10.10.1-0.10.4-0.4-0.1
Sum of active levers in priming session hrs 5-64.23.95.0-1.52.22.1-2.0
Progressive ratio0.10.20.40.30.6-0.20.5
Food seeking constrained by brief footshock0.10.20.50.7-0.2-0.30.2
Seeking ratio, punishment vs. effort0.10.10.20.1-0.50.2-0.4
Retroperitoneal fat weight0.10.30.70.80.3-0.30.5
Reaction time number correct0.00.10.10.40.40.10.0
Reaction time mean minus median0.10.10.3-0.30.5-0.20.3
Reaction time mean minus median AUC0.10.20.5-0.50.70.10.0
Reaction time num false alarms1.41.92.40.8-1.5-1.51.5
Reaction time num false alarms AUC1.93.03.71.2-1.8-1.91.9
Reaction time trials correct on left0.00.10.10.40.40.10.0
Reaction time trials on left0.00.10.20.30.40.10.0
Reaction time mean0.10.20.70.10.90.10.2
Reaction time mean AUC0.10.20.50.40.7-0.10.4
Median of all reaction times0.10.20.50.50.70.10.2
Reaction time omissions0.40.61.1-1.01.10.4-0.2
Reaction time false alarm rate1.11.52.00.6-1.4-1.41.4
Reaction time premature initiation rate2.53.53.61.8-1.9-1.91.9
Reaction time premature initiations2.34.14.72.2-1.8-2.12.1
Std. dev. reaction times0.20.30.8-0.70.90.2-0.1
Reaction time trials completed0.00.10.20.30.40.10.0
Reaction time trials AUC0.00.10.10.40.30.00.1
Run reversals in cocaine runway, females0.40.40.9-0.30.60.9-0.6
Run reversals in cocaine runway, males0.20.20.50.7-0.10.30.2
Latency to leave start box in cocaine runway0.91.11.8-1.00.51.3-1.1
Latency to leave start box in cocaine runway, F0.20.20.3-0.4-0.60.3-0.4
Latency to leave start box in cocaine runway, M3.33.04.1-1.41.82.0-1.7
Std. dev. time between licks in bursts0.40.51.1-0.4-0.80.5-1.0
Total sessions with >9 infusions1.31.64.20.8-2.1-0.90.9
Short access day 1 total inactive lever presses0.10.10.60.0-0.80.1-0.0
Short access day 10 total inactive lever presses0.20.61.1-1.10.60.7-0.6
Short access day 1 total infusions1.01.33.80.4-2.0-1.00.6
Short access day 10 total infusions0.70.91.90.9-1.4-0.50.8
Short access total infusions0.91.22.80.9-1.7-0.70.8
Short access day 1 locomotion0.60.82.90.1-1.7-0.5-0.1
Short access day 10 total locomotion0.20.30.7-0.40.30.6-0.8
Short access total locomotion0.30.40.7-0.6-0.00.7-0.8
One hour access (0.3 mA shock)0.10.10.20.00.40.3-0.3
Compulsive drug intake0.70.82.4-0.31.50.7-0.4
One hour access (shock baseline)0.20.30.40.7-0.6-0.40.4
Social response proportion0.20.30.5-0.70.50.20.5
Social responses0.91.21.6-0.91.31.3-0.8
Social time1.42.03.0-1.71.51.2-1.0
Soleus weight1.33.84.92.1-1.3-2.02.2
Bone: stiffness0.10.10.10.4-0.3-0.30.1
Tibialis anterior weight4.615.725.45.0-2.3-4.04.0
Time to tail flick, vehicle, before self-admin0.10.10.2-0.4-0.2-0.10.2
Time to tail flick, vehicle, after self-admin0.10.10.2-0.50.1-0.40.2
Time to tail flick, test, before self-admin0.40.40.6-0.80.80.4-0.4
Time to tail flick, test, after self-admin0.00.00.1-0.3-0.2-0.1-0.2
Delta time to tail flick, vehicle, before/after SA0.00.00.10.2-0.3-0.30.1
Delta time to tail flick, test, before/after SA0.50.50.90.7-0.9-0.60.4
Tibia length0.41.02.01.4-0.0-1.01.1
Ambulatory time before self-admin0.10.10.30.10.0-0.50.3
Ambulatory time after self-admin0.20.20.4-0.5-0.6-0.1-0.2
Bone: tissue strength0.00.00.1-0.1-0.4-0.0-0.1
Total heroin consumption0.50.61.0-0.61.00.6-0.7
Bone: trabecular number0.20.40.8-0.90.60.3-0.6
Bone: trabecular spacing0.91.11.9-0.61.21.4-0.9
Bone: trabecular thickness0.40.50.60.7-0.6-0.80.7
Bone: trabecular tissue density0.40.71.00.8-0.8-0.71.0
Water consumed over 24 hours0.10.10.20.4-0.4-0.2-0.1
Number of responses in last shaping day4.44.86.11.8-2.5-2.32.1