Adamts6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Adamts6 0.03 0.03 1.0e-03 0.02 0.02 0.02 0.01 3.3e-03 5.6e-03 2.2e-03 1.8e-02
2 pVTA gene expression Adamts6 0.03 0.03 8.0e-03 0.01 -0 0.01 -0 2.2e-02 4.2e-01 3.9e-02 7.2e-01
3 LHb alternative TSS XM_017591188.2 0.15 0.13 7.9e-03 0.05 0.01 0.03 0.04 2.5e-02 1.7e-01 6.1e-02 3.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.61.01.1-1.0-0.91.1
Area under the delay curve0.30.30.50.60.7-0.3
BMI with tail2.17.38.5-2.6-2.62.9
BMI without tail0.41.21.7-0.9-1.11.3
Body weight3.917.119.34.24.4-3.8
Weight adjusted by age0.00.00.10.20.2-0.2
Bone surface0.00.00.00.00.1-0.0
Bone volume0.00.00.1-0.2-0.20.2
Breakpoint value in progressive ratio session2.93.53.9-2.0-1.81.8
Number of licking bursts2.03.33.7-1.9-1.91.7
Context. condit. distance diff. score1.92.22.41.51.6-1.4
Locomotion velocity, session 10.30.30.40.60.6-0.5
Locomotion distance, session 10.81.01.11.01.0-1.1
Locomotion velocity, session 24.24.95.32.32.2-2.1
Locomotion distance, session 20.71.01.21.11.0-0.9
Locomotion velocity, session 35.15.86.32.42.5-2.3
Locomotion distance, session 37.48.08.52.92.9-2.7
Stereotopy head waving bouts, day 30.20.20.40.30.5-0.6
Stereotopy head waving duration, day 30.00.00.1-0.3-0.10.1
Locomotion velocity, session 70.10.10.10.30.3-0.2
Locomotion distance, session 70.30.40.50.70.6-0.6
Stereotopy head waving bouts, day 70.00.00.0-0.20.0-0.1
Stereotopy head waving duration, day 70.10.10.20.20.4-0.5
Locomotion velocity, session 82.53.03.11.81.7-1.8
Locomotion distance, session 84.56.67.02.62.6-2.5
Degree of sensitization distance3.94.04.7-2.0-2.21.8
Degree of sensitization stereotypy0.00.00.0-0.2-0.1-0.0
Conditioned locomotion0.00.00.0-0.10.00.1
Cocaine response after cond. corrected1.82.22.31.51.5-1.5
Cocaine response after cond. not corrected2.63.03.11.71.7-1.8
Cocaine response before conditioning0.30.30.40.60.6-0.5
Saline control response1.21.61.71.31.2-1.2
Bone: connectivity density0.00.10.1-0.2-0.30.2
Bone: cortical apparent density0.00.00.00.1-0.0-0.1
Bone: cortical area0.20.20.30.50.5-0.5
Bone: cortical porosity2.32.52.7-1.7-1.51.6
Bone: cortical porosity2.22.42.7-1.7-1.51.5
Bone: cortical thickness0.10.20.30.30.3-0.6
Bone: cortical thickness1.11.31.61.21.2-1.0
Bone: cortical tissue density0.00.00.00.10.0-0.2
Condit. Reinf. active minus inactive responses1.71.92.4-1.5-1.51.1
Condit. Reinf. active-inactive response ratio1.81.92.2-1.5-1.51.1
Condit. Reinf. active responses0.30.30.5-0.6-0.70.3
Condit. Reinf. inactive responses1.01.31.31.21.1-1.1
Incentive salience index mean1.21.51.7-1.3-1.31.0
Condit. Reinf. lever presses0.20.30.3-0.6-0.50.5
Condit. Reinf. active minus inactive responses4.45.66.12.32.5-2.3
Condit. Reinf. active-inactive response ratio2.22.62.81.61.7-1.6
Condit. Reinf. active responses1.52.12.11.41.5-1.5
Condit. Reinf. inactive responses0.10.10.10.30.3-0.4
Condit. Reinf. lever presses2.02.73.31.61.5-1.8
Condit. Reinf. lever reinforcers received2.02.82.91.61.7-1.7
Conditioned reinforcement - actives1.83.13.92.01.6-1.7
Conditioned reinforcement - inactives1.01.51.91.30.9-1.4
Conditioned locomotion0.70.91.31.10.9-0.9
Patch foraging indifference point 0 sec3.97.28.32.62.6-2.9
Patch foraging indifference point AUC0.50.70.8-0.9-0.90.8
Delay disc. indifference point, 0s delay0.30.40.6-0.8-0.50.5
Delay disc. indifference point, 16s delay1.11.21.71.31.2-0.8
Delay disc. indifference point, 2s delay0.30.30.4-0.6-0.40.6
Delay disc. indifference point, 24s delay1.11.21.51.21.1-1.0
Delay disc. indifference point, 4s delay0.00.00.0-0.20.10.1
Delay disc. indifference point, 8s delay0.10.10.20.50.4-0.2
Indifference point function ln k3.05.35.42.32.3-2.3
Indifference point function log k3.05.35.42.32.3-2.3
Patch foraging total patch changes 0 sec4.58.59.62.82.8-3.1
Patch foraging total patch changes 12 sec0.00.00.00.10.1-0.1
Patch foraging total patch changes 18 sec0.00.00.0-0.1-0.0-0.2
Patch foraging total patch changes 24 sec0.71.21.41.01.0-1.2
Patch foraging total patch changes 6 sec0.91.41.91.11.0-1.4
Patch foraging time to switch 0 sec4.08.39.1-2.8-2.83.0
Patch foraging water rate 0 sec3.47.27.72.72.6-2.8
Patch foraging water rate 12 sec3.67.57.72.72.8-2.8
Patch foraging water rate 18 sec5.58.69.03.03.0-2.8
Patch foraging water rate 24 sec2.63.74.32.02.1-1.7
Patch foraging water rate 6 sec13.119.119.74.44.4-4.3
Seeking ratio, delayed vs. immediate footshock1.21.41.8-1.1-1.11.4
Distance traveled before self-admin0.70.91.30.91.1-0.8
Distance traveled after self-admin1.31.62.01.31.4-1.1
Extensor digitorum longus weight4.115.917.1-4.0-3.94.1
Bone: elastic displacement1.82.12.3-1.5-1.51.4
Bone: elastic work0.50.60.7-0.8-0.80.8
Bone: endosteal estimation0.40.91.01.01.0-0.8
Bone: endosteal perimeter0.00.00.10.20.2-0.2
Epididymis fat weight0.93.23.51.71.8-1.9
Delta time in closed arm before/after self-admin3.43.23.5-1.7-1.81.9
Delta time in open arm before/after self-admin0.10.10.2-0.3-0.30.5
Diff in mean of infusions in LGA sessions0.00.00.00.00.20.1
Delay discount exponential model param0.30.30.5-0.6-0.70.3
Extinction: sum of active levers before priming2.42.73.3-1.8-1.71.3
Active lever presses in extinction session 63.23.23.3-1.8-1.71.8
Bone: final force0.40.70.70.90.8-0.8
Bone: final moment0.71.11.11.11.0-1.0
Food consumed during 24 hour testing period0.81.11.21.01.0-1.1
Glucose0.30.40.7-0.7-0.90.3
Heart weight0.81.31.71.11.0-1.3
Delay discount hyperbolic model param0.20.30.4-0.5-0.60.3
Intermittent access intake day 1-15 change0.00.00.0-0.1-0.00.1
Intermittent access intake escalation0.00.10.10.20.3-0.1
Intermittent access intake escalation 20.30.30.6-0.5-0.40.7
Intermitt. access day 1 inactive lever presses0.31.21.7-1.1-1.30.9
Intermitt. access day 15 inactive lever presses0.61.31.6-1.0-1.31.1
Intermitt. access escalation Index0.30.40.80.50.9-0.3
Intermittent access day 1 total infusions1.32.22.71.61.3-1.5
Intermittent access day 15 total infusions2.03.03.31.81.6-1.8
Intermittent access terminal intake (last 3 days)1.21.61.71.31.2-1.3
Intermittent access total infusions3.33.94.32.11.8-2.1
Intermittent access day 1 locomotion2.43.03.21.81.7-1.8
Intermittent access day 15 total locomotion1.93.53.91.91.7-2.0
Intermittent access total locomotion4.55.45.82.42.3-2.3
Intermittent access standard deviation0.00.00.1-0.1-0.30.2
Left kidney weight2.812.813.43.53.6-3.7
Right kidney weight2.712.112.73.43.5-3.6
Cocaine induced anxiety0.71.01.01.01.0-1.0
Post-drug Anxiety0.50.50.60.80.7-0.7
Baseline Anxiety0.10.10.2-0.4-0.40.4
Tail length10.440.541.66.46.4-6.3
Length with tail15.868.672.28.48.5-8.0
Length without tail11.135.738.35.96.2-5.8
Times rat made contact with spout0.30.40.4-0.7-0.60.5
Lifetime Intake2.73.33.71.91.6-1.9
Liver weight, left5.08.39.22.82.8-3.0
Liver weight, right0.10.20.40.20.1-0.6
Locomotor activity0.40.60.70.80.6-0.8
Locomotor testing distance0.10.20.3-0.4-0.60.2
Locomotor testing rearing0.10.10.2-0.3-0.50.2
Locomotion in novel chamber0.70.91.4-0.9-0.81.2
Locomotion in novel chamber post-restriction0.00.10.1-0.1-0.20.3
Fecal boli incidents, locomotor time 11.01.52.0-1.2-1.41.0
Change in fecal boli incidents, locomotor task0.10.10.2-0.1-0.10.5
Time >=10cm from walls, locomotor time 11.71.82.2-1.2-1.51.3
Bouts of movement, locomotor time 10.40.40.5-0.7-0.70.6
Total resting periods, locomotor time 10.00.00.1-0.2-0.20.1
Rest time, locomotor task time 10.70.90.9-0.9-1.00.9
Distance moved, locomotor task time 10.91.41.61.21.3-1.0
Vertical activity count, locomotor time 10.30.61.20.81.1-0.4
Time >=10cm from walls, locomotor time 20.71.01.2-0.9-1.11.0
Bouts of movement, locomotor time 20.10.10.20.50.40.1
Total resting periods, locomotor time 20.10.10.3-0.0-0.10.5
Rest time, locomotor task time 22.93.63.8-1.9-1.91.9
Distance moved, locomotor task time 21.41.72.21.41.5-1.0
Vertical activity count, locomotor time 20.10.10.20.30.5-0.1
Light reinforcement 11.64.04.61.91.9-2.2
Light reinforcement 20.10.20.3-0.4-0.60.2
Bone: marrow area0.40.80.91.01.0-0.8
Bone: maximum diameter0.20.40.4-0.6-0.50.7
Bone: maximum force0.10.20.20.50.5-0.5
Bone: maximum moment0.30.60.60.80.8-0.8
Mean time between licks in bursts0.10.20.3-0.4-0.50.3
Mean num. licks in bursts1.52.32.41.61.5-1.4
Cd content in liver2.02.22.91.41.3-1.7
Co content in liver0.00.00.0-0.1-0.10.1
Cu content in liver0.10.10.20.10.2-0.4
Fe content in liver1.21.41.61.21.3-1.1
K content in liver1.31.21.71.31.3-0.7
Mg content in liver0.10.10.10.20.20.4
Mn content in liver0.40.50.50.70.7-0.7
Na content in liver0.00.00.1-0.1-0.10.2
Rb content in liver1.92.23.01.31.3-1.7
Se content in liver0.81.01.3-1.0-0.91.1
Sr content in liver2.52.22.7-1.4-1.41.6
Zn content in liver0.20.20.20.40.5-0.4
Bone: minimum diameter2.74.94.92.22.2-2.2
Time in familiar zone, hab. session 14.34.24.32.12.0-2.1
Time in novel zone, hab. session 16.06.06.2-2.5-2.52.4
Total zone transitions, hab. session 10.00.00.00.10.20.1
Total locomotion distance, hab. session 10.10.10.30.30.50.1
Locomotion velocity, hab. session 10.10.10.20.30.50.1
Time in familiar zone, hab. session 21.71.82.11.41.4-1.2
Time in novel zone, hab. session 22.22.22.5-1.5-1.61.4
Total zone transitions, hab. session 20.10.10.20.30.4-0.2
Total locomotion distance, hab. session 20.10.10.2-0.00.20.4
Locomotion velocity, hab. session 20.10.10.30.30.50.1
Novel to familiar place preference ratio2.02.12.7-1.5-1.61.2
Novelty place preference1.51.62.1-1.3-1.40.9
Time in novel zone, NPP test1.61.82.3-1.4-1.51.0
Total zone transitions, NPP test1.31.92.21.41.5-1.2
Total locomotion distance, NPP test0.10.20.30.50.6-0.2
Locomotion velocity, NPP test0.70.91.31.01.1-0.7
Intraocular pressure3.75.35.9-2.3-2.42.1
Delta distance traveled before/after self-admin1.01.01.21.11.0-1.0
Delta ambulatory time before/after self-admin0.81.01.01.01.0-1.0
Parametrial fat weight0.00.00.00.20.1-0.2
Pavlov. Cond. lever latency0.00.00.0-0.1-0.2-0.1
Pavlov. Cond. magazine entry latency1.52.02.61.51.6-1.0
Pavlov. Cond. change in total contacts3.33.53.71.91.9-1.8
Pavlov. Cond. index score0.50.70.90.91.0-0.5
Pavlov. Cond. latency score0.20.20.30.50.6-0.2
Pavlov. Cond. lever contacts0.60.70.90.91.0-0.6
Pavlov. Cond. magazine entry number2.73.44.3-2.0-2.11.5
Pavlov. Cond. intertrial magazine entries5.76.87.5-2.6-2.72.5
Pavlov. Cond. lever-magazine prob. diff.0.80.91.21.01.1-0.7
Pavlov. Cond. response bias2.32.93.71.81.9-1.3
Pavlov. Cond. lever latency2.94.04.8-1.9-1.92.2
Pavlov. Cond. magazine entry latency1.21.41.61.21.3-1.0
Pavlov. Cond. change in total contacts4.87.78.22.82.7-2.9
Pavlov. Cond. index score2.83.84.02.01.9-2.0
Pavlov. Cond. latency score2.93.94.02.01.9-2.0
Pavlov. Cond. lever contacts2.23.13.91.71.6-2.0
Pavlov. Cond. magazine entry number2.12.73.1-1.7-1.81.4
Pavlov. Cond. intertrial magazine entries0.00.00.10.00.1-0.4
Pavlov. Cond. lever-magazine prob. diff.3.04.04.12.01.9-2.0
Pavlov. Cond. response bias1.72.32.51.51.5-1.6
Time in closed arm before self-admin0.10.20.30.50.5-0.2
Time in closed arm after self-admin0.20.20.6-0.2-0.20.8
Time in open arm before self-admin0.30.30.50.40.4-0.7
Time in open arm after self-admin0.40.50.7-0.7-0.90.4
Bone: periosteal estimation0.30.60.70.80.8-0.8
Bone: periosteal perimeter0.10.30.30.50.5-0.5
Bone: post-yield work0.20.30.30.60.5-0.5
Progressive ratio test 1 active lever presses2.32.83.41.81.5-1.7
Progressive ratio test 1 breakpoint2.63.23.81.91.6-1.8
Progressive ratio test 1 inactive lever presses0.81.21.51.20.9-1.1
Progressive ratio test 2 active lever presses2.42.83.51.91.6-1.5
Progressive ratio test 2 breakpoint2.62.93.71.91.7-1.5
Progressive ratio test 2 inactive lever presses0.71.11.61.30.8-1.0
Incentive Sensitization - Responses2.53.53.81.91.9-1.7
Incentive Sensitization - Breakpoint2.12.83.11.71.8-1.5
Sum of active levers in priming session hrs 5-62.12.02.4-1.5-1.51.2
Progressive ratio0.00.10.10.20.1-0.3
Food seeking constrained by brief footshock2.53.13.41.71.8-1.8
Seeking ratio, punishment vs. effort0.71.01.10.91.1-1.0
Retroperitoneal fat weight0.10.30.40.40.6-0.5
Reaction time number correct5.911.412.83.53.6-3.1
Reaction time mean minus median0.00.00.00.10.10.0
Reaction time mean minus median AUC0.10.20.20.50.5-0.3
Reaction time num false alarms0.40.50.8-0.9-0.80.4
Reaction time num false alarms AUC0.71.21.5-1.2-1.20.7
Reaction time trials correct on left5.911.412.83.53.6-3.1
Reaction time trials on left6.111.512.93.53.6-3.1
Reaction time mean1.52.42.6-1.6-1.61.5
Reaction time mean AUC1.32.02.1-1.4-1.51.4
Median of all reaction times2.73.84.1-2.0-2.01.8
Reaction time omissions0.20.40.60.50.5-0.8
Reaction time false alarm rate5.27.28.5-2.8-2.92.3
Reaction time premature initiation rate4.05.56.12.42.2-2.5
Reaction time premature initiations8.815.716.54.13.9-3.9
Std. dev. reaction times0.20.30.4-0.5-0.50.7
Reaction time trials completed6.111.512.93.53.6-3.1
Reaction time trials AUC5.510.411.73.33.4-3.0
Run reversals in cocaine runway, females0.60.61.1-0.5-0.61.0
Run reversals in cocaine runway, males0.10.10.10.30.20.1
Latency to leave start box in cocaine runway2.62.93.4-1.7-1.51.8
Latency to leave start box in cocaine runway, F0.30.30.4-0.5-0.50.6
Latency to leave start box in cocaine runway, M2.72.53.0-1.6-1.41.7
Std. dev. time between licks in bursts0.60.91.0-0.9-0.81.0
Total sessions with >9 infusions0.91.11.31.10.8-1.1
Short access day 1 total inactive lever presses1.11.42.21.11.0-1.5
Short access day 10 total inactive lever presses0.10.30.3-0.5-0.50.5
Short access day 1 total infusions0.50.71.10.80.6-1.0
Short access day 10 total infusions1.72.22.51.61.3-1.6
Short access total infusions1.31.62.01.31.1-1.4
Short access day 1 locomotion0.10.20.20.50.3-0.4
Short access day 10 total locomotion0.40.70.8-0.9-0.90.8
Short access total locomotion0.30.40.40.60.6-0.6
One hour access (0.3 mA shock)2.12.43.31.81.4-1.4
Compulsive drug intake1.61.92.2-1.3-1.31.5
One hour access (shock baseline)3.24.95.72.42.0-2.3
Social response proportion0.00.00.0-0.1-0.10.1
Social responses1.21.52.11.41.3-0.9
Social time0.00.00.0-0.1-0.1-0.1
Soleus weight0.20.60.9-0.9-0.90.4
Bone: stiffness0.30.40.50.60.7-0.7
Tibialis anterior weight2.79.310.1-3.0-2.93.2
Time to tail flick, vehicle, before self-admin1.71.82.31.21.3-1.5
Time to tail flick, vehicle, after self-admin0.00.00.10.00.2-0.1
Time to tail flick, test, before self-admin0.10.10.1-0.3-0.40.2
Time to tail flick, test, after self-admin1.92.02.4-1.3-1.31.6
Delta time to tail flick, vehicle, before/after SA0.90.91.1-1.0-0.81.0
Delta time to tail flick, test, before/after SA0.10.10.1-0.1-0.10.4
Tibia length7.019.422.74.24.3-4.8
Ambulatory time before self-admin0.10.20.30.40.5-0.2
Ambulatory time after self-admin0.91.11.41.11.2-0.9
Bone: tissue strength0.80.80.9-1.0-0.90.8
Total heroin consumption1.31.51.8-1.3-1.21.2
Bone: trabecular number0.00.00.00.00.10.0
Bone: trabecular spacing0.10.20.2-0.4-0.50.2
Bone: trabecular thickness0.60.80.9-0.8-0.80.9
Bone: trabecular tissue density2.43.64.0-2.0-1.91.8
Water consumed over 24 hours0.40.60.7-0.8-0.80.6
Number of responses in last shaping day0.50.60.9-0.5-1.00.8