Acvrl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Acvrl1 0.07 0.05 3.2e-05 0.04 0.04 0.04 0.04 8.0e-05 2.6e-05 5.4e-05 4.2e-05
2 IC isoform ratio XM_039078444.2 0.28 0.14 7.4e-03 0.03 0.05 0.04 0.04 2.9e-02 4.9e-03 1.0e-02 6.1e-03
3 IC gene expression Acvrl1 0.61 0.15 9.2e-04 0.01 0.02 0.01 0.01 1.0e-01 4.1e-02 1.2e-01 1.4e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.62.2-1.51.4-0.8
Area under the delay curve0.10.20.4-0.40.4-0.6
BMI with tail1.96.713.4-3.70.22.6
BMI without tail0.52.75.2-2.3-0.31.7
Body weight1.04.49.7-3.11.41.2
Weight adjusted by age0.41.12.0-1.4-1.00.7
Bone surface1.02.13.4-1.81.6-0.3
Bone volume0.91.84.1-2.01.1-0.1
Breakpoint value in progressive ratio session0.00.10.2-0.20.4-0.1
Number of licking bursts0.20.71.50.4-1.20.7
Context. condit. distance diff. score0.20.20.5-0.30.70.3
Locomotion velocity, session 11.51.74.42.10.8-0.4
Locomotion distance, session 10.60.71.21.1-0.60.8
Locomotion velocity, session 21.41.72.21.51.2-1.2
Locomotion distance, session 20.71.02.31.5-0.60.6
Locomotion velocity, session 32.63.06.42.50.9-1.3
Locomotion distance, session 33.84.35.72.31.5-2.4
Stereotopy head waving bouts, day 33.33.96.3-1.1-2.12.5
Stereotopy head waving duration, day 31.01.22.6-0.0-1.01.6
Locomotion velocity, session 71.11.22.11.40.3-1.1
Locomotion distance, session 72.22.85.92.41.0-1.2
Stereotopy head waving bouts, day 72.83.35.1-2.3-1.81.2
Stereotopy head waving duration, day 71.72.13.3-1.8-1.31.2
Locomotion velocity, session 80.00.00.10.30.00.0
Locomotion distance, session 80.60.92.01.40.9-0.2
Degree of sensitization distance1.11.22.9-0.5-0.71.7
Degree of sensitization stereotypy1.41.63.6-1.9-1.00.3
Conditioned locomotion0.30.30.80.4-0.20.9
Cocaine response after cond. corrected0.40.50.9-0.3-0.80.9
Cocaine response after cond. not corrected0.10.20.30.0-0.60.5
Cocaine response before conditioning1.01.22.01.40.8-0.9
Saline control response0.00.00.00.10.1-0.2
Bone: connectivity density1.11.73.3-0.41.8-1.3
Bone: cortical apparent density3.45.38.6-1.2-2.42.9
Bone: cortical area0.71.23.1-1.80.7-0.1
Bone: cortical porosity1.41.52.00.81.4-1.4
Bone: cortical porosity1.11.21.60.91.3-1.1
Bone: cortical thickness0.30.51.3-1.10.30.1
Bone: cortical thickness0.30.30.40.60.5-0.5
Bone: cortical tissue density3.25.18.4-1.2-2.42.9
Condit. Reinf. active minus inactive responses0.10.20.30.20.5-0.4
Condit. Reinf. active-inactive response ratio0.80.91.40.31.1-1.2
Condit. Reinf. active responses0.10.20.40.60.4-0.1
Condit. Reinf. inactive responses0.60.80.91.0-0.71.0
Incentive salience index mean0.10.20.2-0.20.4-0.5
Condit. Reinf. lever presses0.30.50.9-1.0-0.30.6
Condit. Reinf. active minus inactive responses0.71.11.6-1.3-0.51.2
Condit. Reinf. active-inactive response ratio0.20.30.6-0.8-0.10.7
Condit. Reinf. active responses0.71.01.2-1.1-0.81.1
Condit. Reinf. inactive responses0.20.30.4-0.2-0.60.6
Condit. Reinf. lever presses0.30.50.70.80.7-0.5
Condit. Reinf. lever reinforcers received0.30.40.7-0.5-0.40.8
Conditioned reinforcement - actives0.10.20.50.7-0.2-0.3
Conditioned reinforcement - inactives0.30.82.01.4-0.5-0.4
Conditioned locomotion0.30.50.90.90.4-0.6
Patch foraging indifference point 0 sec0.30.71.71.3-0.5-0.4
Patch foraging indifference point AUC0.30.71.3-0.2-1.20.8
Delay disc. indifference point, 0s delay0.80.91.9-0.40.8-1.4
Delay disc. indifference point, 16s delay0.20.20.5-0.20.5-0.7
Delay disc. indifference point, 2s delay4.14.66.6-2.6-1.91.9
Delay disc. indifference point, 24s delay0.00.00.1-0.10.30.1
Delay disc. indifference point, 4s delay0.20.20.4-0.50.3-0.6
Delay disc. indifference point, 8s delay0.50.91.30.21.1-1.1
Indifference point function ln k0.20.71.3-0.91.2-0.2
Indifference point function log k0.20.71.3-0.91.2-0.2
Patch foraging total patch changes 0 sec0.30.92.51.6-0.2-0.6
Patch foraging total patch changes 12 sec0.60.81.01.0-1.00.7
Patch foraging total patch changes 18 sec0.30.81.81.3-0.6-0.4
Patch foraging total patch changes 24 sec0.10.40.70.8-0.60.0
Patch foraging total patch changes 6 sec0.61.01.31.1-1.10.5
Patch foraging time to switch 0 sec0.20.71.9-0.0-1.40.5
Patch foraging water rate 0 sec0.20.71.7-0.61.30.2
Patch foraging water rate 12 sec0.41.74.00.12.0-1.0
Patch foraging water rate 18 sec0.10.10.4-0.10.20.6
Patch foraging water rate 24 sec0.40.61.2-1.10.60.5
Patch foraging water rate 6 sec1.72.54.8-0.52.2-1.6
Seeking ratio, delayed vs. immediate footshock0.20.30.6-0.10.8-0.6
Distance traveled before self-admin0.10.30.50.7-0.5-0.4
Distance traveled after self-admin1.52.63.92.01.5-1.3
Extensor digitorum longus weight6.023.840.1-6.3-3.44.4
Bone: elastic displacement2.22.88.02.80.7-0.3
Bone: elastic work1.72.23.31.81.6-1.0
Bone: endosteal estimation0.71.72.7-1.61.4-0.5
Bone: endosteal perimeter0.71.64.3-2.10.7-0.1
Epididymis fat weight1.68.113.92.33.7-2.2
Delta time in closed arm before/after self-admin0.10.10.20.10.4-0.5
Delta time in open arm before/after self-admin1.41.73.11.71.2-0.8
Diff in mean of infusions in LGA sessions0.50.91.7-1.3-0.40.9
Delay discount exponential model param0.10.20.20.5-0.20.5
Extinction: sum of active levers before priming0.71.02.2-1.5-0.10.9
Active lever presses in extinction session 60.50.50.70.50.7-0.9
Bone: final force1.42.33.9-1.72.0-0.6
Bone: final moment1.62.64.5-1.72.1-0.8
Food consumed during 24 hour testing period0.71.54.00.42.0-0.5
Glucose0.10.20.30.60.30.1
Heart weight0.81.32.40.21.2-1.5
Delay discount hyperbolic model param0.10.20.40.70.00.2
Intermittent access intake day 1-15 change0.10.81.60.71.3-0.4
Intermittent access intake escalation0.10.41.00.21.0-0.4
Intermittent access intake escalation 20.91.52.60.51.2-1.6
Intermitt. access day 1 inactive lever presses0.00.40.7-0.2-0.80.7
Intermitt. access day 15 inactive lever presses0.00.10.10.3-0.0-0.3
Intermitt. access escalation Index0.30.91.5-1.0-1.20.3
Intermittent access day 1 total infusions0.10.30.50.7-0.6-0.2
Intermittent access day 15 total infusions0.00.10.20.4-0.20.3
Intermittent access terminal intake (last 3 days)0.00.10.20.4-0.3-0.0
Intermittent access total infusions0.20.20.40.4-0.60.2
Intermittent access day 1 locomotion0.20.41.01.0-0.2-0.1
Intermittent access day 15 total locomotion0.72.83.41.81.5-1.7
Intermittent access total locomotion0.70.92.41.60.1-0.5
Intermittent access standard deviation0.63.04.81.41.5-2.2
Left kidney weight0.21.32.3-1.51.1-0.6
Right kidney weight0.53.56.4-2.51.7-1.0
Cocaine induced anxiety0.20.51.3-0.51.1-0.2
Post-drug Anxiety0.91.12.5-0.21.6-0.8
Baseline Anxiety0.00.00.0-0.2-0.00.2
Tail length0.20.81.80.40.7-1.3
Length with tail0.21.12.1-0.81.4-0.7
Length without tail0.42.24.3-1.42.1-0.6
Times rat made contact with spout0.80.91.50.71.2-0.9
Lifetime Intake0.30.30.80.9-0.4-0.2
Liver weight, left1.73.04.3-1.52.1-1.5
Liver weight, right0.61.01.9-0.61.4-0.9
Locomotor activity0.20.40.70.8-0.0-0.6
Locomotor testing distance0.41.12.11.50.1-1.0
Locomotor testing rearing0.31.01.61.10.4-1.3
Locomotion in novel chamber0.81.13.2-1.80.0-0.2
Locomotion in novel chamber post-restriction0.10.20.30.30.5-0.3
Fecal boli incidents, locomotor time 10.82.23.51.91.4-1.0
Change in fecal boli incidents, locomotor task0.91.01.2-0.7-1.11.1
Time >=10cm from walls, locomotor time 10.30.40.60.80.10.8
Bouts of movement, locomotor time 10.30.40.80.50.4-0.9
Total resting periods, locomotor time 10.50.61.01.00.3-0.8
Rest time, locomotor task time 10.30.41.01.00.2-0.5
Distance moved, locomotor task time 10.20.50.8-0.6-0.90.5
Vertical activity count, locomotor time 10.21.72.9-1.7-1.01.1
Time >=10cm from walls, locomotor time 20.10.30.60.80.2-0.5
Bouts of movement, locomotor time 20.41.42.9-1.7-0.41.1
Total resting periods, locomotor time 20.41.83.9-2.0-0.51.0
Rest time, locomotor task time 20.10.10.20.1-0.30.4
Distance moved, locomotor task time 20.00.00.10.0-0.3-0.1
Vertical activity count, locomotor time 20.10.10.2-0.5-0.20.3
Light reinforcement 10.10.30.50.7-0.7-0.1
Light reinforcement 20.00.00.1-0.00.0-0.3
Bone: marrow area0.61.62.4-1.61.4-0.5
Bone: maximum diameter0.30.61.6-1.30.00.4
Bone: maximum force1.32.65.5-2.31.50.1
Bone: maximum moment1.52.85.4-2.31.7-0.2
Mean time between licks in bursts0.20.92.41.50.5-0.3
Mean num. licks in bursts0.82.24.30.42.1-1.4
Cd content in liver0.10.10.30.60.10.2
Co content in liver0.10.20.2-0.4-0.30.5
Cu content in liver0.50.61.4-0.30.5-1.2
Fe content in liver0.70.81.60.9-0.5-1.2
K content in liver0.10.10.1-0.10.0-0.4
Mg content in liver0.20.20.30.60.40.2
Mn content in liver0.10.10.3-0.3-0.20.6
Na content in liver1.21.43.6-0.10.8-1.9
Rb content in liver0.20.30.70.80.1-0.4
Se content in liver0.81.02.01.40.1-1.0
Sr content in liver1.51.32.80.11.0-1.7
Zn content in liver0.40.51.41.20.4-0.1
Bone: minimum diameter0.81.54.0-2.00.7-0.1
Time in familiar zone, hab. session 10.20.30.40.40.60.5
Time in novel zone, hab. session 11.41.62.4-1.1-1.61.1
Total zone transitions, hab. session 10.71.01.6-0.7-1.30.9
Total locomotion distance, hab. session 10.10.20.30.6-0.20.4
Locomotion velocity, hab. session 10.10.10.40.60.1-0.0
Time in familiar zone, hab. session 20.50.61.6-0.11.30.2
Time in novel zone, hab. session 21.31.43.3-0.3-1.80.9
Total zone transitions, hab. session 20.10.20.30.60.0-0.4
Total locomotion distance, hab. session 20.20.30.50.7-0.30.5
Locomotion velocity, hab. session 20.20.20.70.90.1-0.0
Novel to familiar place preference ratio0.70.92.4-1.5-0.60.1
Novelty place preference0.50.61.7-1.3-0.5-0.0
Time in novel zone, NPP test0.60.81.8-1.3-0.70.2
Total zone transitions, NPP test0.40.61.61.3-0.60.1
Total locomotion distance, NPP test0.91.33.82.0-0.30.0
Locomotion velocity, NPP test1.01.43.92.00.2-0.4
Intraocular pressure0.81.33.81.9-0.00.4
Delta distance traveled before/after self-admin4.34.77.31.92.7-1.8
Delta ambulatory time before/after self-admin2.64.56.11.92.5-1.9
Parametrial fat weight0.92.24.32.11.11.0
Pavlov. Cond. lever latency0.50.61.41.20.5-0.4
Pavlov. Cond. magazine entry latency1.41.83.7-1.9-0.91.0
Pavlov. Cond. change in total contacts2.02.24.2-2.1-0.91.3
Pavlov. Cond. index score1.82.35.1-2.3-1.00.8
Pavlov. Cond. latency score1.62.04.6-2.1-0.90.7
Pavlov. Cond. lever contacts0.60.71.6-1.3-0.50.4
Pavlov. Cond. magazine entry number0.91.22.51.60.7-0.8
Pavlov. Cond. intertrial magazine entries1.21.44.22.10.20.0
Pavlov. Cond. lever-magazine prob. diff.1.72.14.9-2.2-0.90.8
Pavlov. Cond. response bias0.60.81.4-1.2-0.60.8
Pavlov. Cond. lever latency0.81.23.0-1.7-0.60.5
Pavlov. Cond. magazine entry latency1.11.63.51.90.9-0.6
Pavlov. Cond. change in total contacts0.41.01.4-1.1-0.71.2
Pavlov. Cond. index score0.61.02.41.50.7-0.4
Pavlov. Cond. latency score0.60.92.31.50.6-0.5
Pavlov. Cond. lever contacts1.01.43.31.80.8-0.6
Pavlov. Cond. magazine entry number0.40.51.0-1.0-0.60.0
Pavlov. Cond. intertrial magazine entries0.41.01.21.10.9-0.9
Pavlov. Cond. lever-magazine prob. diff.0.40.71.61.30.5-0.3
Pavlov. Cond. response bias1.01.43.21.80.9-0.3
Time in closed arm before self-admin1.32.23.4-1.8-1.21.3
Time in closed arm after self-admin1.61.92.3-1.5-1.31.2
Time in open arm before self-admin0.70.81.5-0.4-1.20.8
Time in open arm after self-admin0.20.20.50.70.30.1
Bone: periosteal estimation1.02.34.6-2.11.4-0.6
Bone: periosteal perimeter1.22.46.7-2.60.30.6
Bone: post-yield work0.50.91.5-1.21.0-0.3
Progressive ratio test 1 active lever presses0.91.53.51.9-0.70.7
Progressive ratio test 1 breakpoint0.91.63.82.0-0.60.7
Progressive ratio test 1 inactive lever presses0.10.40.80.1-0.90.5
Progressive ratio test 2 active lever presses0.20.30.50.5-0.70.5
Progressive ratio test 2 breakpoint0.30.40.70.3-0.90.6
Progressive ratio test 2 inactive lever presses0.10.30.90.90.1-0.3
Incentive Sensitization - Responses0.10.40.9-1.0-0.30.3
Incentive Sensitization - Breakpoint0.20.51.1-1.0-0.50.3
Sum of active levers in priming session hrs 5-60.10.10.3-0.1-0.50.3
Progressive ratio0.10.40.50.7-0.70.3
Food seeking constrained by brief footshock0.50.61.31.1-0.4-0.5
Seeking ratio, punishment vs. effort0.10.10.2-0.10.4-0.5
Retroperitoneal fat weight1.98.313.83.73.0-1.5
Reaction time number correct0.41.42.9-0.01.7-1.1
Reaction time mean minus median0.10.71.50.7-1.20.1
Reaction time mean minus median AUC0.10.51.40.3-1.20.4
Reaction time num false alarms0.30.60.60.7-0.70.8
Reaction time num false alarms AUC0.30.70.90.7-1.00.8
Reaction time trials correct on left0.41.42.9-0.01.7-1.1
Reaction time trials on left0.41.32.80.01.7-1.1
Reaction time mean0.10.30.80.0-0.90.4
Reaction time mean AUC0.10.20.5-0.1-0.70.4
Median of all reaction times0.10.10.2-0.2-0.50.4
Reaction time omissions0.71.12.01.4-1.1-0.4
Reaction time false alarm rate1.31.83.30.2-1.81.4
Reaction time premature initiation rate1.01.63.01.70.6-1.2
Reaction time premature initiations0.92.63.11.61.5-1.8
Std. dev. reaction times0.31.02.30.6-1.50.6
Reaction time trials completed0.41.32.80.01.7-1.1
Reaction time trials AUC0.41.32.8-0.21.7-1.0
Run reversals in cocaine runway, females0.10.10.3-0.30.20.5
Run reversals in cocaine runway, males2.32.53.8-1.3-2.01.4
Latency to leave start box in cocaine runway0.10.10.3-0.2-0.50.1
Latency to leave start box in cocaine runway, F0.50.61.30.1-1.20.7
Latency to leave start box in cocaine runway, M0.50.50.7-0.50.6-0.9
Std. dev. time between licks in bursts0.71.32.81.70.5-1.0
Total sessions with >9 infusions0.40.50.90.8-0.90.2
Short access day 1 total inactive lever presses0.20.30.80.9-0.4-0.1
Short access day 10 total inactive lever presses0.00.20.3-0.3-0.1-0.6
Short access day 1 total infusions0.20.51.01.0-0.0-0.7
Short access day 10 total infusions0.30.41.00.5-1.00.1
Short access total infusions0.60.82.01.4-0.4-0.6
Short access day 1 locomotion0.10.10.20.3-0.40.2
Short access day 10 total locomotion0.00.20.40.2-0.60.3
Short access total locomotion0.20.30.50.6-0.70.3
One hour access (0.3 mA shock)0.20.20.5-0.7-0.3-0.1
Compulsive drug intake0.40.50.8-0.7-0.60.9
One hour access (shock baseline)0.10.20.5-0.50.1-0.7
Social response proportion1.92.43.31.21.5-1.8
Social responses0.50.61.11.0-0.6-0.6
Social time1.72.75.10.71.6-2.3
Soleus weight0.10.40.8-0.50.9-0.3
Bone: stiffness2.13.810.4-3.20.70.6
Tibialis anterior weight9.833.643.8-6.6-4.75.9
Time to tail flick, vehicle, before self-admin0.40.40.80.4-0.6-0.9
Time to tail flick, vehicle, after self-admin0.20.50.7-0.8-0.60.6
Time to tail flick, test, before self-admin0.60.71.1-0.5-1.00.9
Time to tail flick, test, after self-admin0.30.30.7-0.9-0.30.1
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.30.40.4
Delta time to tail flick, test, before/after SA0.20.20.4-0.20.4-0.6
Tibia length0.61.53.5-1.01.9-0.3
Ambulatory time before self-admin0.20.51.21.1-0.2-0.4
Ambulatory time after self-admin1.93.04.62.11.4-1.6
Bone: tissue strength0.80.91.3-1.1-0.31.2
Total heroin consumption0.30.30.80.10.9-0.5
Bone: trabecular number1.12.03.8-0.41.9-1.4
Bone: trabecular spacing0.60.81.5-0.1-1.21.0
Bone: trabecular thickness0.20.30.8-0.9-0.20.3
Bone: trabecular tissue density2.95.07.0-1.8-2.22.6
Water consumed over 24 hours0.40.91.70.71.3-0.6
Number of responses in last shaping day0.50.71.7-0.3-0.51.3