Zfpl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Zfpl1 0.04 0.02 1.7e-03 0.02 0.01 0.01 0.01 5.0e-03 1.1e-02 4.4e-02 1.0e-02
2 Liver alternative TSS NM_001286936.1 0.03 0.02 4.2e-03 0.01 0.01 0.01 0.01 1.3e-02 2.0e-02 4.3e-02 3.9e-02
3 Liver gene expression Zfpl1 0.07 0.04 9.0e-06 0.02 0.04 0.04 0.03 4.9e-03 2.5e-05 6.0e-05 5.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.50.80.9-0.7-0.5
Area under the delay curve0.10.10.4-0.10.10.6
BMI with tail1.24.15.62.4-2.4-1.1
BMI without tail0.31.62.41.5-1.6-0.2
Body weight2.611.414.13.8-3.7-2.5
Weight adjusted by age0.92.52.81.5-1.6-1.7
Bone surface4.89.59.93.1-3.0-3.1
Bone volume1.73.34.01.8-1.6-2.0
Breakpoint value in progressive ratio session2.34.14.42.0-1.9-2.1
Number of licking bursts0.20.50.60.6-0.7-0.8
Context. condit. distance diff. score2.53.03.3-1.61.71.8
Locomotion velocity, session 10.10.10.10.2-0.10.4
Locomotion distance, session 10.30.40.60.8-0.80.1
Locomotion velocity, session 22.52.93.71.9-1.9-1.2
Locomotion distance, session 20.50.71.21.0-1.1-0.1
Locomotion velocity, session 30.50.51.1-0.50.51.0
Locomotion distance, session 30.10.10.1-0.20.20.3
Stereotopy head waving bouts, day 31.01.22.4-0.80.81.5
Stereotopy head waving duration, day 30.70.91.2-0.80.91.1
Locomotion velocity, session 70.60.61.1-0.70.61.1
Locomotion distance, session 70.30.30.9-0.20.11.0
Stereotopy head waving bouts, day 70.00.00.1-0.10.1-0.3
Stereotopy head waving duration, day 70.91.11.31.0-0.9-1.2
Locomotion velocity, session 80.70.81.21.1-1.0-0.5
Locomotion distance, session 80.30.50.9-0.50.60.9
Degree of sensitization distance0.10.10.3-0.0-0.00.6
Degree of sensitization stereotypy0.70.81.40.7-0.7-1.2
Conditioned locomotion1.61.92.41.4-1.5-1.1
Cocaine response after cond. corrected1.62.43.5-1.41.41.9
Cocaine response after cond. not corrected1.21.82.5-1.21.21.6
Cocaine response before conditioning1.01.21.91.0-0.9-1.4
Saline control response3.95.46.62.5-2.6-1.8
Bone: connectivity density2.13.34.12.0-1.8-1.6
Bone: cortical apparent density0.10.10.10.3-0.3-0.3
Bone: cortical area0.91.41.81.2-1.0-1.3
Bone: cortical porosity0.20.20.30.5-0.5-0.3
Bone: cortical porosity0.60.70.80.9-0.9-0.6
Bone: cortical thickness2.74.45.32.3-2.1-1.9
Bone: cortical thickness0.20.30.50.7-0.6-0.0
Bone: cortical tissue density0.10.20.20.5-0.5-0.5
Condit. Reinf. active minus inactive responses0.10.10.20.4-0.4-0.1
Condit. Reinf. active-inactive response ratio0.00.00.10.2-0.1-0.1
Condit. Reinf. active responses0.00.00.00.1-0.10.1
Condit. Reinf. inactive responses0.10.10.2-0.40.30.3
Incentive salience index mean0.20.20.30.6-0.6-0.1
Condit. Reinf. lever presses0.30.50.50.7-0.7-0.7
Condit. Reinf. active minus inactive responses0.10.10.1-0.30.3-0.3
Condit. Reinf. active-inactive response ratio0.30.60.9-0.90.90.1
Condit. Reinf. active responses0.10.20.40.3-0.4-0.6
Condit. Reinf. inactive responses0.40.60.80.9-0.9-0.3
Condit. Reinf. lever presses2.33.44.71.6-1.7-2.2
Condit. Reinf. lever reinforcers received0.50.71.00.6-0.7-1.0
Conditioned reinforcement - actives0.20.71.90.1-0.2-1.4
Conditioned reinforcement - inactives1.13.14.9-2.02.20.6
Conditioned locomotion5.88.711.1-3.33.32.0
Patch foraging indifference point 0 sec0.00.00.10.00.30.2
Patch foraging indifference point AUC1.74.05.71.8-1.7-2.4
Delay disc. indifference point, 0s delay0.50.61.4-0.40.41.2
Delay disc. indifference point, 16s delay0.60.81.0-0.91.00.7
Delay disc. indifference point, 2s delay0.10.10.2-0.30.40.4
Delay disc. indifference point, 24s delay0.10.10.3-0.20.10.5
Delay disc. indifference point, 4s delay0.40.41.1-0.20.31.1
Delay disc. indifference point, 8s delay0.10.20.6-0.00.10.8
Indifference point function ln k4.714.117.6-3.53.54.2
Indifference point function log k4.714.117.6-3.53.54.2
Patch foraging total patch changes 0 sec0.00.00.00.10.20.2
Patch foraging total patch changes 12 sec4.66.16.62.6-2.5-2.3
Patch foraging total patch changes 18 sec0.40.81.10.9-0.8-1.0
Patch foraging total patch changes 24 sec0.93.13.41.8-1.6-1.8
Patch foraging total patch changes 6 sec0.71.11.81.3-1.1-0.7
Patch foraging time to switch 0 sec0.72.62.91.6-1.7-1.4
Patch foraging water rate 0 sec1.76.47.9-2.82.62.1
Patch foraging water rate 12 sec3.514.114.4-3.83.73.7
Patch foraging water rate 18 sec2.24.96.3-2.12.02.5
Patch foraging water rate 24 sec4.26.06.6-2.62.42.4
Patch foraging water rate 6 sec5.37.88.6-2.92.62.9
Seeking ratio, delayed vs. immediate footshock0.20.30.5-0.50.20.7
Distance traveled before self-admin0.51.21.71.0-0.9-1.3
Distance traveled after self-admin0.20.40.70.6-0.4-0.8
Extensor digitorum longus weight7.730.635.25.9-5.9-4.7
Bone: elastic displacement1.01.31.7-1.01.01.3
Bone: elastic work0.60.71.21.1-1.0-0.2
Bone: endosteal estimation0.61.41.4-1.21.21.2
Bone: endosteal perimeter0.61.51.9-1.41.40.8
Epididymis fat weight1.89.212.0-3.53.32.2
Delta time in closed arm before/after self-admin0.30.30.60.4-0.30.8
Delta time in open arm before/after self-admin0.70.82.10.5-0.4-1.5
Diff in mean of infusions in LGA sessions0.30.60.60.8-0.8-0.8
Delay discount exponential model param0.10.10.3-0.0-0.0-0.5
Extinction: sum of active levers before priming1.72.63.11.8-1.6-1.4
Active lever presses in extinction session 64.64.75.92.0-2.0-2.4
Bone: final force2.74.45.02.2-2.1-2.0
Bone: final moment2.54.04.62.2-2.0-1.9
Food consumed during 24 hour testing period0.20.30.80.2-0.3-0.9
Glucose3.04.85.8-2.12.02.4
Heart weight1.82.95.8-1.21.22.4
Delay discount hyperbolic model param0.10.10.2-0.0-0.1-0.5
Intermittent access intake day 1-15 change0.21.32.0-1.41.40.2
Intermittent access intake escalation0.21.01.6-1.21.3-0.1
Intermittent access intake escalation 20.50.91.4-1.11.2-0.1
Intermitt. access day 1 inactive lever presses0.00.20.4-0.40.60.1
Intermitt. access day 15 inactive lever presses0.42.03.0-1.61.70.6
Intermitt. access escalation Index1.44.44.9-2.02.12.2
Intermittent access day 1 total infusions1.03.13.5-1.91.81.5
Intermittent access day 15 total infusions2.45.97.9-2.82.81.3
Intermittent access terminal intake (last 3 days)2.64.56.3-2.52.51.1
Intermittent access total infusions3.13.74.8-2.22.11.3
Intermittent access day 1 locomotion1.32.52.9-1.71.71.3
Intermittent access day 15 total locomotion1.24.56.6-2.52.60.9
Intermittent access total locomotion5.46.58.8-2.93.01.4
Intermittent access standard deviation0.31.62.4-1.41.50.6
Left kidney weight0.32.42.8-1.61.71.3
Right kidney weight0.11.01.3-1.11.10.7
Cocaine induced anxiety0.10.10.40.2-0.1-0.6
Post-drug Anxiety0.80.91.20.9-0.9-1.1
Baseline Anxiety0.20.30.40.6-0.7-0.1
Tail length0.31.72.11.4-1.4-0.9
Length with tail1.98.29.93.1-3.1-2.3
Length without tail1.26.27.52.7-2.7-1.9
Times rat made contact with spout0.40.40.60.8-0.8-0.3
Lifetime Intake2.32.93.6-1.91.81.3
Liver weight, left1.01.72.0-1.21.21.4
Liver weight, right2.95.06.9-2.02.12.6
Locomotor activity2.64.04.7-2.01.82.2
Locomotor testing distance2.15.26.7-2.22.02.6
Locomotor testing rearing1.24.56.0-1.92.02.4
Locomotion in novel chamber4.45.97.0-2.62.61.9
Locomotion in novel chamber post-restriction1.33.94.9-2.22.21.4
Fecal boli incidents, locomotor time 10.10.41.10.20.1-1.0
Change in fecal boli incidents, locomotor task0.30.41.0-0.1-0.11.0
Time >=10cm from walls, locomotor time 10.30.40.7-0.70.90.2
Bouts of movement, locomotor time 12.02.63.31.4-1.6-1.8
Total resting periods, locomotor time 11.61.82.71.1-1.2-1.6
Rest time, locomotor task time 10.81.31.9-1.41.20.7
Distance moved, locomotor task time 10.00.10.10.3-0.20.1
Vertical activity count, locomotor time 10.21.41.5-1.21.21.2
Time >=10cm from walls, locomotor time 20.10.40.90.4-0.3-1.0
Bouts of movement, locomotor time 20.20.60.70.7-0.8-0.8
Total resting periods, locomotor time 20.10.20.30.4-0.5-0.5
Rest time, locomotor task time 21.62.73.1-1.71.61.5
Distance moved, locomotor task time 21.21.61.71.3-1.3-1.2
Vertical activity count, locomotor time 20.00.00.1-0.10.00.2
Light reinforcement 10.00.10.1-0.20.40.2
Light reinforcement 20.30.61.0-0.91.0-0.1
Bone: marrow area0.71.61.8-1.31.21.3
Bone: maximum diameter0.40.81.60.6-0.5-1.3
Bone: maximum force3.16.26.72.6-2.5-2.4
Bone: maximum moment2.95.56.22.5-2.4-2.2
Mean time between licks in bursts0.00.20.30.5-0.60.4
Mean num. licks in bursts0.10.40.7-0.50.50.8
Cd content in liver0.91.01.5-1.21.20.2
Co content in liver1.41.72.0-1.21.21.4
Cu content in liver0.00.00.0-0.10.20.2
Fe content in liver0.10.10.20.4-0.4-0.3
K content in liver0.20.20.40.6-0.50.0
Mg content in liver0.70.81.4-0.70.71.2
Mn content in liver4.14.55.22.0-2.1-2.3
Na content in liver0.50.50.70.8-0.6-0.8
Rb content in liver2.93.44.2-1.71.82.0
Se content in liver0.10.10.2-0.40.3-0.3
Sr content in liver3.73.23.71.7-1.7-1.9
Zn content in liver0.20.30.50.7-0.5-0.3
Bone: minimum diameter0.61.21.3-1.01.11.2
Time in familiar zone, hab. session 10.30.30.4-0.50.50.6
Time in novel zone, hab. session 10.20.20.4-0.40.30.6
Total zone transitions, hab. session 10.60.91.01.0-1.0-0.8
Total locomotion distance, hab. session 10.30.40.5-0.50.60.7
Locomotion velocity, hab. session 10.00.00.1-0.10.10.2
Time in familiar zone, hab. session 20.20.20.5-0.10.20.7
Time in novel zone, hab. session 20.10.10.20.3-0.4-0.4
Total zone transitions, hab. session 21.21.52.21.4-1.5-0.5
Total locomotion distance, hab. session 20.20.20.60.0-0.10.8
Locomotion velocity, hab. session 20.20.20.6-0.20.20.8
Novel to familiar place preference ratio1.52.03.21.2-1.1-1.8
Novelty place preference0.81.01.90.8-0.7-1.4
Time in novel zone, NPP test0.60.71.30.6-0.6-1.2
Total zone transitions, NPP test2.33.44.22.0-2.0-1.5
Total locomotion distance, NPP test0.10.10.10.3-0.30.3
Locomotion velocity, NPP test0.10.10.10.3-0.40.1
Intraocular pressure0.71.11.7-1.31.3-0.2
Delta distance traveled before/after self-admin0.30.40.6-0.50.50.8
Delta ambulatory time before/after self-admin0.10.20.4-0.20.20.6
Parametrial fat weight3.47.99.3-3.03.02.4
Pavlov. Cond. lever latency0.20.30.4-0.50.60.4
Pavlov. Cond. magazine entry latency0.30.40.60.6-0.8-0.5
Pavlov. Cond. change in total contacts0.30.30.70.3-0.4-0.8
Pavlov. Cond. index score0.30.40.50.5-0.7-0.7
Pavlov. Cond. latency score0.20.20.30.4-0.6-0.4
Pavlov. Cond. lever contacts0.10.10.10.2-0.4-0.0
Pavlov. Cond. magazine entry number0.60.81.2-0.70.81.1
Pavlov. Cond. intertrial magazine entries0.50.61.0-0.91.00.3
Pavlov. Cond. lever-magazine prob. diff.0.60.70.80.7-0.9-0.9
Pavlov. Cond. response bias0.40.50.70.5-0.6-0.8
Pavlov. Cond. lever latency0.91.22.1-0.90.91.4
Pavlov. Cond. magazine entry latency4.15.86.32.5-2.4-2.3
Pavlov. Cond. change in total contacts1.43.55.61.6-1.6-2.4
Pavlov. Cond. index score2.74.25.32.0-1.9-2.3
Pavlov. Cond. latency score2.23.54.61.8-1.7-2.1
Pavlov. Cond. lever contacts0.91.32.10.9-0.9-1.5
Pavlov. Cond. magazine entry number8.110.611.1-3.23.23.3
Pavlov. Cond. intertrial magazine entries0.71.51.8-1.31.31.0
Pavlov. Cond. lever-magazine prob. diff.3.35.06.12.1-2.1-2.5
Pavlov. Cond. response bias2.63.74.51.8-1.8-2.1
Time in closed arm before self-admin0.10.20.3-0.60.5-0.1
Time in closed arm after self-admin0.60.61.0-0.60.71.0
Time in open arm before self-admin1.01.23.2-0.40.41.8
Time in open arm after self-admin0.10.10.10.3-0.4-0.1
Bone: periosteal estimation0.00.00.10.10.0-0.3
Bone: periosteal perimeter0.10.30.40.5-0.4-0.6
Bone: post-yield work0.40.70.80.8-0.9-0.9
Progressive ratio test 1 active lever presses0.10.20.4-0.60.5-0.0
Progressive ratio test 1 breakpoint0.10.20.3-0.50.4-0.1
Progressive ratio test 1 inactive lever presses0.00.10.2-0.30.4-0.2
Progressive ratio test 2 active lever presses1.62.23.2-1.81.80.6
Progressive ratio test 2 breakpoint1.72.23.2-1.81.70.5
Progressive ratio test 2 inactive lever presses2.78.511.2-3.33.41.8
Incentive Sensitization - Responses0.00.00.1-0.20.1-0.2
Incentive Sensitization - Breakpoint0.00.10.1-0.40.3-0.1
Sum of active levers in priming session hrs 5-63.23.06.81.1-1.0-2.6
Progressive ratio0.51.42.21.2-1.5-0.8
Food seeking constrained by brief footshock0.00.00.00.2-0.20.2
Seeking ratio, punishment vs. effort1.22.62.9-1.51.71.7
Retroperitoneal fat weight9.642.945.6-6.76.76.2
Reaction time number correct0.10.40.40.6-0.6-0.6
Reaction time mean minus median1.06.67.72.4-2.5-2.8
Reaction time mean minus median AUC0.53.54.31.7-1.8-2.1
Reaction time num false alarms0.81.42.7-0.80.91.7
Reaction time num false alarms AUC0.20.41.2-0.10.21.1
Reaction time trials correct on left0.10.40.40.6-0.6-0.6
Reaction time trials on left0.20.50.60.7-0.7-0.7
Reaction time mean0.10.30.80.3-0.3-0.9
Reaction time mean AUC0.10.20.70.2-0.2-0.8
Median of all reaction times0.10.10.1-0.40.4-0.2
Reaction time omissions1.93.03.21.6-1.8-1.8
Reaction time false alarm rate0.81.12.3-0.70.81.5
Reaction time premature initiation rate1.92.94.22.0-2.0-0.8
Reaction time premature initiations1.65.06.62.5-2.6-1.5
Std. dev. reaction times0.72.23.21.3-1.3-1.8
Reaction time trials completed0.20.50.60.7-0.7-0.7
Reaction time trials AUC0.10.20.30.5-0.5-0.5
Run reversals in cocaine runway, females0.40.40.70.5-0.50.9
Run reversals in cocaine runway, males0.30.30.5-0.60.70.3
Latency to leave start box in cocaine runway0.10.10.2-0.40.30.4
Latency to leave start box in cocaine runway, F0.00.00.1-0.10.10.2
Latency to leave start box in cocaine runway, M0.00.00.0-0.10.10.2
Std. dev. time between licks in bursts0.20.30.9-0.20.11.0
Total sessions with >9 infusions0.00.00.0-0.1-0.00.2
Short access day 1 total inactive lever presses1.93.73.9-2.02.01.8
Short access day 10 total inactive lever presses0.21.21.5-0.91.11.2
Short access day 1 total infusions1.12.12.2-1.51.41.5
Short access day 10 total infusions0.30.60.6-0.80.70.7
Short access total infusions0.50.70.9-0.80.71.0
Short access day 1 locomotion1.32.12.6-1.51.61.3
Short access day 10 total locomotion0.31.11.5-1.21.20.7
Short access total locomotion1.11.62.0-1.41.41.0
One hour access (0.3 mA shock)6.47.69.3-3.03.02.1
Compulsive drug intake1.01.52.31.5-1.5-0.3
One hour access (shock baseline)3.07.910.5-3.23.21.7
Social response proportion0.81.01.31.0-0.8-1.2
Social responses0.20.30.40.6-0.5-0.6
Social time0.30.40.50.7-0.7-0.6
Soleus weight4.413.114.2-3.73.83.4
Bone: stiffness2.64.75.02.2-2.1-2.2
Tibialis anterior weight11.138.240.46.4-6.3-5.9
Time to tail flick, vehicle, before self-admin0.20.30.30.6-0.6-0.4
Time to tail flick, vehicle, after self-admin0.20.40.70.8-0.80.1
Time to tail flick, test, before self-admin2.73.14.4-1.61.52.1
Time to tail flick, test, after self-admin0.20.20.50.2-0.3-0.7
Delta time to tail flick, vehicle, before/after SA0.20.20.30.5-0.50.1
Delta time to tail flick, test, before/after SA2.93.66.31.5-1.5-2.5
Tibia length1.84.99.21.7-1.6-3.0
Ambulatory time before self-admin0.30.91.70.8-0.7-1.3
Ambulatory time after self-admin0.10.20.3-0.40.6-0.0
Bone: tissue strength0.00.00.0-0.0-0.1-0.2
Total heroin consumption5.86.87.02.6-2.6-2.6
Bone: trabecular number0.61.21.41.1-1.0-1.2
Bone: trabecular spacing0.60.91.4-0.80.71.2
Bone: trabecular thickness0.40.50.6-0.70.80.7
Bone: trabecular tissue density3.25.76.9-2.62.61.8
Water consumed over 24 hours0.81.51.71.3-1.3-1.1
Number of responses in last shaping day0.00.00.1-0.10.10.3