Zfpl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS NM_001286936.1 0.02 0.02 9.7e-03 0.01 0.01 0 0.01 5.7e-02 3.9e-02 1.7e-01 5.0e-02
2 Adipose gene expression Zfpl1 0.04 0.03 1.6e-03 0.02 0.01 0.01 0.01 2.2e-03 9.8e-03 5.4e-02 9.8e-03
3 Liver gene expression Zfpl1 0.07 0.04 2.5e-06 0.02 0.05 0.04 0.04 2.6e-03 6.8e-06 4.2e-05 6.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.61.31.10.7-0.4
Area under the delay curve0.20.20.40.1-0.30.7
BMI with tail2.89.016.34.03.0-1.4
BMI without tail1.22.65.52.31.4-0.5
Body weight3.916.421.44.64.3-3.1
Weight adjusted by age2.52.93.61.61.6-1.9
Bone surface5.19.09.83.12.8-3.0
Bone volume1.93.33.81.91.5-1.9
Breakpoint value in progressive ratio session4.04.44.72.02.1-2.2
Number of licking bursts0.40.50.50.60.7-0.7
Context. condit. distance diff. score2.32.73.3-1.5-1.61.8
Locomotion velocity, session 10.00.00.10.10.10.3
Locomotion distance, session 10.40.61.21.10.70.1
Locomotion velocity, session 22.83.34.82.21.8-1.3
Locomotion distance, session 20.60.81.61.30.9-0.1
Locomotion velocity, session 30.30.41.0-0.0-0.51.0
Locomotion distance, session 30.10.10.1-0.2-0.30.4
Stereotopy head waving bouts, day 30.81.02.1-0.4-0.81.4
Stereotopy head waving duration, day 30.70.91.2-0.7-1.01.1
Locomotion velocity, session 70.60.71.4-0.2-0.81.2
Locomotion distance, session 70.40.41.3-0.0-0.31.1
Stereotopy head waving bouts, day 70.10.10.2-0.2-0.4-0.1
Stereotopy head waving duration, day 71.31.51.71.31.1-1.3
Locomotion velocity, session 80.70.81.21.01.1-0.5
Locomotion distance, session 80.20.40.7-0.1-0.50.9
Degree of sensitization distance0.20.20.40.2-0.00.7
Degree of sensitization stereotypy0.80.91.50.80.7-1.2
Conditioned locomotion1.71.92.41.41.5-1.2
Cocaine response after cond. corrected2.22.43.6-1.3-1.51.9
Cocaine response after cond. not corrected1.71.82.8-1.1-1.31.7
Cocaine response before conditioning1.01.21.60.91.0-1.3
Saline control response4.15.46.92.52.6-1.8
Bone: connectivity density2.33.65.12.31.9-1.5
Bone: cortical apparent density0.20.30.40.40.7-0.4
Bone: cortical area0.81.31.81.01.0-1.4
Bone: cortical porosity0.10.10.20.50.3-0.1
Bone: cortical porosity0.60.71.01.00.9-0.6
Bone: cortical thickness2.33.74.51.82.1-1.8
Bone: cortical thickness0.20.30.50.50.7-0.2
Bone: cortical tissue density0.30.40.60.50.8-0.5
Condit. Reinf. active minus inactive responses0.10.10.20.50.4-0.1
Condit. Reinf. active-inactive response ratio0.00.00.00.10.1-0.1
Condit. Reinf. active responses0.00.00.10.30.20.0
Condit. Reinf. inactive responses0.00.00.10.0-0.10.2
Incentive salience index mean0.30.30.70.80.6-0.1
Condit. Reinf. lever presses0.40.50.80.90.7-0.5
Condit. Reinf. active minus inactive responses0.10.10.1-0.3-0.4-0.1
Condit. Reinf. active-inactive response ratio0.40.40.7-0.7-0.90.1
Condit. Reinf. active responses0.00.10.10.20.2-0.3
Condit. Reinf. inactive responses0.20.30.50.70.6-0.0
Condit. Reinf. lever presses2.83.85.01.81.8-2.2
Condit. Reinf. lever reinforcers received0.30.40.70.60.6-0.8
Conditioned reinforcement - actives0.30.30.3-0.6-0.5-0.5
Conditioned reinforcement - inactives5.56.29.1-3.0-2.71.5
Conditioned locomotion8.29.913.6-3.7-3.32.2
Patch foraging indifference point 0 sec0.00.00.1-0.2-0.10.2
Patch foraging indifference point AUC4.45.06.32.02.2-2.5
Delay disc. indifference point, 0s delay0.80.91.6-0.2-1.01.3
Delay disc. indifference point, 16s delay0.80.80.8-0.9-0.90.9
Delay disc. indifference point, 2s delay0.10.10.1-0.1-0.40.4
Delay disc. indifference point, 24s delay0.20.20.4-0.2-0.30.7
Delay disc. indifference point, 4s delay0.50.51.2-0.1-0.51.1
Delay disc. indifference point, 8s delay0.20.20.60.1-0.30.8
Indifference point function ln k10.815.018.5-3.5-3.74.3
Indifference point function log k10.815.018.5-3.5-3.74.3
Patch foraging total patch changes 0 sec0.00.00.1-0.2-0.00.3
Patch foraging total patch changes 12 sec5.36.87.72.62.8-2.5
Patch foraging total patch changes 18 sec0.71.01.11.00.9-1.0
Patch foraging total patch changes 24 sec2.73.33.71.71.9-1.9
Patch foraging total patch changes 6 sec0.91.31.91.21.4-0.7
Patch foraging time to switch 0 sec2.23.44.72.21.8-1.5
Patch foraging water rate 0 sec4.47.19.9-3.1-2.62.1
Patch foraging water rate 12 sec10.015.317.5-4.2-3.83.7
Patch foraging water rate 18 sec4.15.56.6-2.3-2.22.6
Patch foraging water rate 24 sec4.96.87.5-2.7-2.72.4
Patch foraging water rate 6 sec5.17.58.1-2.8-2.52.8
Seeking ratio, delayed vs. immediate footshock0.10.10.3-0.10.00.6
Distance traveled before self-admin1.01.11.70.90.8-1.3
Distance traveled after self-admin0.40.40.70.40.7-0.9
Extensor digitorum longus weight8.031.737.36.15.9-4.8
Bone: elastic displacement1.72.02.2-1.5-1.21.5
Bone: elastic work0.30.40.70.70.9-0.1
Bone: endosteal estimation0.61.21.8-0.7-1.31.2
Bone: endosteal perimeter0.61.22.3-0.9-1.50.8
Epididymis fat weight2.55.87.4-2.3-2.72.1
Delta time in closed arm before/after self-admin0.40.41.00.10.11.0
Delta time in open arm before/after self-admin0.50.51.40.10.2-1.2
Diff in mean of infusions in LGA sessions0.50.50.80.50.8-0.9
Delay discount exponential model param0.10.10.3-0.10.3-0.6
Extinction: sum of active levers before priming5.45.36.12.52.4-2.1
Active lever presses in extinction session 63.63.55.71.51.6-2.4
Bone: final force3.55.66.22.52.4-2.2
Bone: final moment3.04.95.52.32.2-2.1
Food consumed during 24 hour testing period0.20.30.8-0.10.2-0.9
Glucose1.92.83.4-1.4-1.81.8
Heart weight4.26.07.0-2.3-2.42.6
Delay discount hyperbolic model param0.10.10.3-0.20.2-0.5
Intermittent access intake day 1-15 change0.70.71.3-1.1-0.8-0.2
Intermittent access intake escalation0.60.61.0-1.0-0.8-0.0
Intermittent access intake escalation 20.30.30.5-0.7-0.4-0.6
Intermitt. access day 1 inactive lever presses2.32.53.1-1.8-1.61.3
Intermitt. access day 15 inactive lever presses2.42.63.7-1.9-1.90.8
Intermitt. access escalation Index4.64.15.9-1.5-2.02.4
Intermittent access day 1 total infusions5.26.17.4-2.1-2.72.5
Intermittent access day 15 total infusions7.78.711.1-3.2-3.32.2
Intermittent access terminal intake (last 3 days)4.95.47.5-2.4-2.71.6
Intermittent access total infusions4.34.86.6-2.1-2.61.8
Intermittent access day 1 locomotion4.44.66.6-1.6-2.22.6
Intermittent access day 15 total locomotion4.54.96.2-2.4-2.51.7
Intermittent access total locomotion5.46.28.1-2.4-2.92.2
Intermittent access standard deviation1.21.32.0-1.4-1.30.4
Left kidney weight0.51.52.1-1.3-1.50.8
Right kidney weight0.10.30.5-0.7-0.6-0.5
Cocaine induced anxiety0.10.10.30.0-0.0-0.5
Post-drug Anxiety1.92.13.51.11.3-1.9
Baseline Anxiety2.42.53.21.51.8-1.4
Tail length0.51.51.81.01.2-1.3
Length with tail2.17.78.72.63.0-2.8
Length without tail2.55.57.02.22.6-2.2
Times rat made contact with spout0.30.30.50.70.7-0.2
Lifetime Intake3.94.45.7-1.9-2.42.0
Liver weight, left0.00.00.1-0.2-0.20.2
Liver weight, right0.10.20.5-0.1-0.30.7
Locomotor activity2.53.94.5-2.1-1.72.1
Locomotor testing distance3.76.17.5-2.5-2.22.7
Locomotor testing rearing3.24.95.6-2.1-2.12.4
Locomotion in novel chamber4.25.16.7-2.6-2.61.4
Locomotion in novel chamber post-restriction3.03.64.2-2.1-2.01.6
Fecal boli incidents, locomotor time 10.40.51.40.20.2-1.2
Change in fecal boli incidents, locomotor task0.50.41.30.20.01.1
Time >=10cm from walls, locomotor time 10.30.30.6-0.3-0.80.3
Bouts of movement, locomotor time 11.81.92.81.01.4-1.7
Total resting periods, locomotor time 11.41.52.40.91.2-1.5
Rest time, locomotor task time 11.31.41.9-1.4-1.30.8
Distance moved, locomotor task time 10.10.10.30.50.30.1
Vertical activity count, locomotor time 11.51.61.7-1.3-1.21.3
Time >=10cm from walls, locomotor time 20.20.20.60.30.1-0.8
Bouts of movement, locomotor time 20.50.60.70.60.9-0.7
Total resting periods, locomotor time 20.20.30.40.40.6-0.5
Rest time, locomotor task time 22.63.03.7-1.6-1.91.6
Distance moved, locomotor task time 21.21.41.51.11.2-1.2
Vertical activity count, locomotor time 20.10.10.2-0.50.00.3
Light reinforcement 10.20.30.4-0.6-0.50.4
Light reinforcement 20.70.91.6-1.1-1.2-0.1
Bone: marrow area0.61.42.0-0.7-1.41.3
Bone: maximum diameter0.40.81.90.60.5-1.4
Bone: maximum force4.06.98.52.92.6-2.4
Bone: maximum moment3.45.97.32.72.3-2.2
Mean time between licks in bursts0.40.51.00.71.00.1
Mean num. licks in bursts0.30.40.6-0.5-0.60.8
Cd content in liver1.11.22.0-1.4-1.20.2
Co content in liver2.02.43.0-1.7-1.31.6
Cu content in liver0.20.30.40.60.5-0.4
Fe content in liver0.20.20.40.40.3-0.6
K content in liver1.71.72.91.71.3-0.7
Mg content in liver0.20.20.50.70.20.3
Mn content in liver3.33.84.81.81.8-2.2
Na content in liver1.51.52.11.11.1-1.4
Rb content in liver1.82.22.9-1.2-1.51.7
Se content in liver0.20.30.80.0-0.1-0.9
Sr content in liver4.03.74.91.51.9-2.2
Zn content in liver1.31.41.61.31.2-1.1
Bone: minimum diameter0.61.11.5-0.5-1.21.2
Time in familiar zone, hab. session 10.30.20.4-0.3-0.50.6
Time in novel zone, hab. session 10.30.30.4-0.6-0.40.6
Total zone transitions, hab. session 10.60.91.11.01.0-0.8
Total locomotion distance, hab. session 10.30.40.6-0.3-0.70.7
Locomotion velocity, hab. session 10.00.00.10.1-0.20.3
Time in familiar zone, hab. session 20.20.20.5-0.2-0.00.7
Time in novel zone, hab. session 20.10.10.20.40.2-0.4
Total zone transitions, hab. session 21.41.83.41.81.3-0.6
Total locomotion distance, hab. session 20.20.30.60.5-0.10.8
Locomotion velocity, hab. session 20.20.20.60.3-0.30.7
Novel to familiar place preference ratio1.92.03.21.21.1-1.8
Novelty place preference1.01.01.90.80.7-1.4
Time in novel zone, NPP test0.70.71.30.70.6-1.1
Total zone transitions, NPP test2.53.64.72.21.9-1.5
Total locomotion distance, NPP test0.10.10.30.60.20.3
Locomotion velocity, NPP test0.10.10.30.60.30.1
Intraocular pressure0.81.12.0-1.4-1.1-0.3
Delta distance traveled before/after self-admin0.10.10.3-0.30.00.5
Delta ambulatory time before/after self-admin0.10.10.3-0.20.10.5
Parametrial fat weight1.93.64.3-1.6-2.12.0
Pavlov. Cond. lever latency0.30.40.7-0.8-0.60.5
Pavlov. Cond. magazine entry latency0.30.40.70.80.5-0.4
Pavlov. Cond. change in total contacts0.20.20.50.40.2-0.7
Pavlov. Cond. index score0.20.30.40.50.4-0.6
Pavlov. Cond. latency score0.10.10.20.50.3-0.3
Pavlov. Cond. lever contacts0.00.00.10.30.10.1
Pavlov. Cond. magazine entry number0.50.61.2-0.5-0.61.1
Pavlov. Cond. intertrial magazine entries0.50.61.2-1.1-0.80.3
Pavlov. Cond. lever-magazine prob. diff.0.50.60.70.80.7-0.8
Pavlov. Cond. response bias0.20.20.40.30.3-0.6
Pavlov. Cond. lever latency0.71.01.5-0.9-0.81.2
Pavlov. Cond. magazine entry latency3.94.55.22.32.1-2.0
Pavlov. Cond. change in total contacts2.83.85.81.71.6-2.4
Pavlov. Cond. index score3.14.04.82.01.8-2.2
Pavlov. Cond. latency score2.63.23.81.81.6-2.0
Pavlov. Cond. lever contacts0.81.11.90.70.9-1.4
Pavlov. Cond. magazine entry number7.59.29.5-3.0-3.03.1
Pavlov. Cond. intertrial magazine entries1.21.51.8-1.3-1.41.1
Pavlov. Cond. lever-magazine prob. diff.3.74.75.42.22.0-2.3
Pavlov. Cond. response bias2.43.34.41.61.7-2.1
Time in closed arm before self-admin0.20.20.50.30.1-0.7
Time in closed arm after self-admin0.20.20.6-0.1-0.10.8
Time in open arm before self-admin1.51.73.7-0.8-0.81.9
Time in open arm after self-admin0.20.20.4-0.6-0.50.2
Bone: periosteal estimation0.00.10.10.3-0.2-0.3
Bone: periosteal perimeter0.20.30.60.50.3-0.7
Bone: post-yield work0.91.32.51.60.7-0.9
Progressive ratio test 1 active lever presses3.13.34.0-2.0-2.01.4
Progressive ratio test 1 breakpoint2.82.93.6-1.9-1.91.3
Progressive ratio test 1 inactive lever presses1.61.71.8-1.3-1.31.3
Progressive ratio test 2 active lever presses4.24.56.0-2.4-2.41.4
Progressive ratio test 2 breakpoint5.66.38.1-2.8-2.81.7
Progressive ratio test 2 inactive lever presses8.39.612.1-3.4-3.52.3
Incentive Sensitization - Responses0.40.40.6-0.7-0.80.2
Incentive Sensitization - Breakpoint0.60.61.0-0.9-1.00.3
Sum of active levers in priming session hrs 5-63.33.26.90.91.4-2.6
Progressive ratio2.73.15.02.21.6-1.3
Food seeking constrained by brief footshock0.10.10.30.30.50.2
Seeking ratio, punishment vs. effort2.73.24.2-2.0-1.51.8
Retroperitoneal fat weight5.417.719.7-4.2-4.44.0
Reaction time number correct0.20.30.50.50.5-0.7
Reaction time mean minus median4.35.77.22.22.2-2.7
Reaction time mean minus median AUC2.22.94.11.51.5-2.0
Reaction time num false alarms0.81.02.4-0.7-0.51.5
Reaction time num false alarms AUC0.20.30.9-0.00.20.9
Reaction time trials correct on left0.20.30.50.50.5-0.7
Reaction time trials on left0.30.50.60.60.6-0.8
Reaction time mean0.20.30.80.20.3-0.9
Reaction time mean AUC0.20.20.70.20.2-0.8
Median of all reaction times0.00.10.1-0.2-0.2-0.3
Reaction time omissions1.31.81.91.31.4-1.4
Reaction time false alarm rate0.60.82.0-0.5-0.41.4
Reaction time premature initiation rate1.92.53.51.81.9-0.9
Reaction time premature initiations3.14.45.72.22.4-1.6
Std. dev. reaction times1.31.83.01.11.2-1.7
Reaction time trials completed0.30.50.60.60.6-0.8
Reaction time trials AUC0.10.20.20.40.4-0.5
Run reversals in cocaine runway, females0.70.71.11.10.60.8
Run reversals in cocaine runway, males0.40.30.7-0.9-0.50.2
Latency to leave start box in cocaine runway0.00.00.10.1-0.10.3
Latency to leave start box in cocaine runway, F0.00.00.00.20.0-0.0
Latency to leave start box in cocaine runway, M0.00.00.10.00.00.3
Std. dev. time between licks in bursts0.30.41.0-0.4-0.11.0
Total sessions with >9 infusions2.12.43.6-1.2-1.41.9
Short access day 1 total inactive lever presses4.44.95.1-2.2-2.22.3
Short access day 10 total inactive lever presses4.85.36.4-2.2-2.12.5
Short access day 1 total infusions3.13.34.4-1.4-1.82.1
Short access day 10 total infusions1.51.72.7-0.8-1.41.7
Short access total infusions1.61.82.8-0.9-1.31.7
Short access day 1 locomotion2.93.14.4-1.3-1.72.1
Short access day 10 total locomotion2.02.23.1-1.1-1.51.8
Short access total locomotion1.81.93.1-0.9-1.31.8
One hour access (0.3 mA shock)10.512.315.1-3.8-3.92.7
Compulsive drug intake1.91.93.01.51.7-0.8
One hour access (shock baseline)8.39.613.0-3.5-3.61.9
Social response proportion1.31.41.61.11.3-1.3
Social responses0.20.30.40.40.6-0.6
Social time0.30.30.40.60.5-0.6
Soleus weight4.312.613.8-3.6-3.73.4
Bone: stiffness3.55.56.32.52.2-2.3
Tibialis anterior weight11.740.042.76.36.5-6.1
Time to tail flick, vehicle, before self-admin0.60.61.01.00.5-0.7
Time to tail flick, vehicle, after self-admin1.21.32.81.71.0-0.3
Time to tail flick, test, before self-admin1.31.32.6-0.4-1.01.6
Time to tail flick, test, after self-admin0.00.00.00.10.1-0.2
Delta time to tail flick, vehicle, before/after SA0.40.40.70.80.6-0.0
Delta time to tail flick, test, before/after SA2.01.83.70.61.2-1.9
Tibia length1.85.29.71.61.8-3.1
Ambulatory time before self-admin1.01.02.00.70.7-1.4
Ambulatory time after self-admin0.00.00.1-0.2-0.0-0.3
Bone: tissue strength0.10.10.20.10.2-0.4
Total heroin consumption6.47.58.22.82.9-2.6
Bone: trabecular number0.60.91.21.10.8-1.0
Bone: trabecular spacing0.40.61.0-0.6-0.51.0
Bone: trabecular thickness0.40.50.7-0.6-0.80.7
Bone: trabecular tissue density3.44.86.0-2.5-2.31.7
Water consumed over 24 hours0.70.80.90.81.0-0.9
Number of responses in last shaping day1.81.92.0-1.4-1.41.3