Zfand2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL intron excision ratio chr9_76667879_76668180 0.02 0.02 9.4e-03 0.01 0.01 0.02 0.02 7.5e-03 7.8e-03 5.7e-03 6.1e-03
2 PL gene expression Zfand2b 0.02 0.02 4.9e-03 0.01 0.02 0.01 0.02 8.9e-03 4.6e-03 8.0e-03 4.8e-03
3 pVTA gene expression Zfand2b 0.1 0.09 2.1e-04 0.08 0.07 0.07 0.07 3.0e-04 3.7e-04 7.0e-04 5.0e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.0-0.0-0.10.2
Area under the delay curve12.112.833.05.71.6-1.7
BMI with tail2.89.127.35.2-0.20.2
BMI without tail17.937.0110.8-10.5-0.30.2
Body weight0.62.43.40.8-1.81.8
Weight adjusted by age3.74.111.2-3.30.7-0.8
Bone surface0.10.20.30.50.3-0.4
Bone volume0.00.00.0-0.1-0.10.1
Breakpoint value in progressive ratio session1.71.94.9-2.20.6-0.6
Number of licking bursts10.912.838.2-6.2-0.40.3
Context. condit. distance diff. score0.40.50.7-0.3-0.80.8
Locomotion velocity, session 10.10.10.1-0.2-0.30.3
Locomotion distance, session 10.10.10.20.40.1-0.0
Locomotion velocity, session 20.91.11.20.91.1-1.1
Locomotion distance, session 23.85.36.22.52.2-2.2
Locomotion velocity, session 31.21.42.00.51.4-1.4
Locomotion distance, session 30.20.20.7-0.80.0-0.1
Stereotopy head waving bouts, day 30.10.10.1-0.3-0.20.2
Stereotopy head waving duration, day 30.00.10.1-0.1-0.30.3
Locomotion velocity, session 70.40.50.90.90.5-0.5
Locomotion distance, session 70.30.40.90.90.4-0.4
Stereotopy head waving bouts, day 70.30.30.40.40.6-0.6
Stereotopy head waving duration, day 70.40.50.60.70.8-0.8
Locomotion velocity, session 81.92.33.01.71.4-1.4
Locomotion distance, session 80.60.91.81.30.7-0.7
Degree of sensitization distance0.40.41.01.00.1-0.1
Degree of sensitization stereotypy0.91.01.00.91.0-1.0
Conditioned locomotion0.81.02.21.5-0.50.6
Cocaine response after cond. corrected9.510.714.3-3.8-3.02.9
Cocaine response after cond. not corrected8.79.611.8-3.4-2.92.9
Cocaine response before conditioning0.40.51.11.10.4-0.4
Saline control response3.84.911.03.31.4-1.3
Bone: connectivity density0.10.20.2-0.5-0.40.4
Bone: cortical apparent density0.30.40.70.80.5-0.5
Bone: cortical area0.00.00.0-0.00.2-0.2
Bone: cortical porosity0.10.10.2-0.00.4-0.4
Bone: cortical porosity0.00.00.00.00.2-0.2
Bone: cortical thickness0.00.00.0-0.2-0.10.2
Bone: cortical thickness0.00.10.2-0.4-0.0-0.0
Bone: cortical tissue density0.30.40.70.80.5-0.5
Condit. Reinf. active minus inactive responses0.00.00.0-0.2-0.00.0
Condit. Reinf. active-inactive response ratio0.50.50.7-0.8-0.70.7
Condit. Reinf. active responses0.00.00.0-0.00.1-0.1
Condit. Reinf. inactive responses0.20.20.20.50.5-0.5
Incentive salience index mean0.00.00.00.00.1-0.1
Condit. Reinf. lever presses0.20.20.2-0.4-0.50.5
Condit. Reinf. active minus inactive responses1.31.64.52.1-0.30.4
Condit. Reinf. active-inactive response ratio1.92.05.02.2-0.60.7
Condit. Reinf. active responses1.01.44.02.00.3-0.2
Condit. Reinf. inactive responses1.72.02.51.11.6-1.6
Condit. Reinf. lever presses2.12.87.52.70.8-0.6
Condit. Reinf. lever reinforcers received1.11.54.12.00.5-0.4
Conditioned reinforcement - actives51.351.3152.6-12.40.7-0.9
Conditioned reinforcement - inactives45.651.3152.6-12.4-0.80.7
Conditioned locomotion5.87.016.7-4.11.4-1.5
Patch foraging indifference point 0 sec9.415.119.0-4.43.7-3.6
Patch foraging indifference point AUC8.19.327.85.3-0.00.1
Delay disc. indifference point, 0s delay2.52.76.2-2.51.0-1.0
Delay disc. indifference point, 16s delay23.423.769.98.40.8-0.8
Delay disc. indifference point, 2s delay2.93.24.8-0.22.2-2.2
Delay disc. indifference point, 24s delay9.18.826.55.1-0.0-0.1
Delay disc. indifference point, 4s delay2.12.22.81.71.4-1.4
Delay disc. indifference point, 8s delay27.027.876.78.81.8-1.9
Indifference point function ln k18.425.775.8-8.70.7-0.8
Indifference point function log k18.425.775.8-8.70.7-0.8
Patch foraging total patch changes 0 sec12.820.737.9-6.23.5-3.4
Patch foraging total patch changes 12 sec4.45.76.0-2.42.4-2.4
Patch foraging total patch changes 18 sec18.724.062.0-7.92.3-2.2
Patch foraging total patch changes 24 sec28.334.694.8-9.72.1-2.1
Patch foraging total patch changes 6 sec10.215.236.6-6.02.2-2.1
Patch foraging time to switch 0 sec11.417.651.7-7.2-0.80.7
Patch foraging water rate 0 sec13.221.163.38.00.2-0.2
Patch foraging water rate 12 sec23.636.1106.410.31.0-0.9
Patch foraging water rate 18 sec3.24.413.13.60.00.0
Patch foraging water rate 24 sec4.86.717.6-4.21.1-1.2
Patch foraging water rate 6 sec12.117.751.87.20.9-0.8
Seeking ratio, delayed vs. immediate footshock2.93.410.13.2-0.00.0
Distance traveled before self-admin1.92.05.9-2.4-0.10.1
Distance traveled after self-admin4.34.89.9-3.11.5-1.5
Extensor digitorum longus weight0.21.02.11.40.6-0.7
Bone: elastic displacement4.04.56.32.51.9-1.9
Bone: elastic work0.60.80.90.81.0-0.9
Bone: endosteal estimation1.43.13.41.71.8-1.8
Bone: endosteal perimeter0.30.61.0-1.0-0.70.6
Epididymis fat weight37.888.2259.3-16.1-1.71.6
Delta time in closed arm before/after self-admin1.11.02.1-1.40.7-0.7
Delta time in open arm before/after self-admin10.910.525.7-5.1-1.71.7
Diff in mean of infusions in LGA sessions1.51.73.41.80.9-0.9
Delay discount exponential model param6.87.217.0-4.1-1.51.5
Extinction: sum of active levers before priming0.20.20.30.40.6-0.4
Active lever presses in extinction session 69.18.925.65.10.8-0.6
Bone: final force1.11.71.71.31.3-1.3
Bone: final moment1.62.62.81.71.6-1.6
Food consumed during 24 hour testing period5.36.419.04.40.2-0.2
Glucose0.00.10.20.4-0.00.0
Heart weight24.034.0101.610.10.5-0.6
Delay discount hyperbolic model param7.57.916.8-4.1-1.81.9
Intermittent access intake day 1-15 change52.952.3154.9-12.41.0-1.0
Intermittent access intake escalation40.439.6115.3-10.71.4-1.3
Intermittent access intake escalation 21.91.92.3-1.51.3-1.3
Intermitt. access day 1 inactive lever presses56.760.7181.7-13.50.4-0.4
Intermitt. access day 15 inactive lever presses98.2107.7322.8-18.0-0.30.4
Intermitt. access escalation Index1.91.74.42.1-0.50.5
Intermittent access day 1 total infusions23.827.682.79.1-0.0-0.0
Intermittent access day 15 total infusions11.913.339.7-6.30.4-0.4
Intermittent access terminal intake (last 3 days)8.89.728.2-5.30.6-0.7
Intermittent access total infusions0.00.00.1-0.30.1-0.2
Intermittent access day 1 locomotion8.89.327.85.30.1-0.2
Intermittent access day 15 total locomotion31.734.1100.2-10.01.0-1.0
Intermittent access total locomotion4.55.114.2-3.80.7-0.8
Intermittent access standard deviation148.0156.9468.9-21.70.9-0.9
Left kidney weight9.225.876.68.8-0.60.7
Right kidney weight18.451.6151.712.3-1.11.3
Cocaine induced anxiety42.248.7144.612.00.9-0.8
Post-drug Anxiety2.02.32.8-1.31.5-1.7
Baseline Anxiety131.3139.8419.2-20.5-0.1-0.2
Tail length42.6129.1380.5-19.5-1.91.8
Length with tail2.69.517.5-4.2-2.32.4
Length without tail26.357.7169.513.0-1.21.4
Times rat made contact with spout3.13.610.7-3.30.1-0.2
Lifetime Intake0.30.30.70.80.2-0.4
Liver weight, left0.81.33.8-2.0-0.10.2
Liver weight, right7.812.929.2-5.4-2.22.2
Locomotor activity4.97.719.64.41.4-1.3
Locomotor testing distance17.729.678.78.92.3-2.2
Locomotor testing rearing36.956.9153.712.43.0-2.9
Locomotion in novel chamber1.11.33.21.80.6-0.7
Locomotion in novel chamber post-restriction4.85.816.94.1-0.40.5
Fecal boli incidents, locomotor time 159.164.6193.213.9-0.50.7
Change in fecal boli incidents, locomotor task0.50.51.3-1.10.3-0.2
Time >=10cm from walls, locomotor time 127.027.379.98.91.0-0.9
Bouts of movement, locomotor time 12.12.36.7-2.6-0.20.2
Total resting periods, locomotor time 10.00.00.0-0.20.2-0.2
Rest time, locomotor task time 13.94.312.63.60.2-0.3
Distance moved, locomotor task time 10.30.41.01.00.2-0.0
Vertical activity count, locomotor time 132.634.1102.310.10.10.3
Time >=10cm from walls, locomotor time 20.40.50.60.60.7-0.8
Bouts of movement, locomotor time 28.18.725.8-5.10.3-0.5
Total resting periods, locomotor time 212.313.138.7-6.20.4-0.7
Rest time, locomotor task time 215.618.051.67.21.1-1.1
Distance moved, locomotor task time 228.032.497.3-9.9-0.0-0.0
Vertical activity count, locomotor time 25.05.414.3-3.8-0.91.0
Light reinforcement 18.315.235.15.92.3-2.3
Light reinforcement 23.14.28.83.01.4-1.4
Bone: marrow area1.53.23.41.71.8-1.9
Bone: maximum diameter0.40.81.2-1.1-0.80.8
Bone: maximum force1.73.03.01.71.7-1.7
Bone: maximum moment2.54.34.62.12.0-2.1
Mean time between licks in bursts4.56.313.0-3.61.8-1.7
Mean num. licks in bursts6.67.821.74.71.0-0.9
Cd content in liver1.31.51.51.21.2-1.2
Co content in liver2.93.43.41.91.9-1.9
Cu content in liver1.11.31.3-1.1-1.21.1
Fe content in liver0.00.00.0-0.1-0.10.1
K content in liver0.40.40.4-0.6-0.60.6
Mg content in liver0.00.00.0-0.1-0.10.1
Mn content in liver0.40.50.50.70.7-0.7
Na content in liver0.10.10.2-0.4-0.40.4
Rb content in liver0.50.70.7-0.8-0.80.8
Se content in liver1.01.21.2-1.1-1.11.1
Sr content in liver0.00.00.00.10.2-0.1
Zn content in liver0.10.10.2-0.4-0.40.4
Bone: minimum diameter0.71.31.31.11.2-1.2
Time in familiar zone, hab. session 14.23.93.9-2.0-2.02.0
Time in novel zone, hab. session 11.81.81.81.31.3-1.3
Total zone transitions, hab. session 10.20.30.30.60.6-0.6
Total locomotion distance, hab. session 10.10.10.10.30.3-0.3
Locomotion velocity, hab. session 10.20.20.20.50.5-0.5
Time in familiar zone, hab. session 22.42.52.6-1.6-1.61.6
Time in novel zone, hab. session 23.03.03.21.61.8-1.8
Total zone transitions, hab. session 20.00.00.0-0.1-0.10.1
Total locomotion distance, hab. session 20.00.00.1-0.30.0-0.0
Locomotion velocity, hab. session 20.20.30.6-0.7-0.40.4
Novel to familiar place preference ratio1.01.01.6-1.3-0.90.9
Novelty place preference0.50.50.9-1.0-0.50.5
Time in novel zone, NPP test0.20.20.5-0.7-0.30.3
Total zone transitions, NPP test0.00.00.10.3-0.00.0
Total locomotion distance, NPP test0.20.20.30.30.5-0.6
Locomotion velocity, NPP test0.20.20.30.20.5-0.5
Intraocular pressure17.924.972.08.51.2-1.1
Delta distance traveled before/after self-admin3.13.43.7-1.71.9-1.9
Delta ambulatory time before/after self-admin5.56.06.82.62.3-2.4
Parametrial fat weight4.28.219.54.4-1.61.6
Pavlov. Cond. lever latency0.40.60.60.70.8-0.8
Pavlov. Cond. magazine entry latency0.20.30.4-0.6-0.40.4
Pavlov. Cond. change in total contacts0.30.30.3-0.4-0.60.6
Pavlov. Cond. index score1.41.71.9-1.4-1.31.3
Pavlov. Cond. latency score0.91.21.3-1.1-1.11.1
Pavlov. Cond. lever contacts0.81.01.0-1.0-1.01.0
Pavlov. Cond. magazine entry number0.10.20.30.50.4-0.4
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.2-0.30.3
Pavlov. Cond. lever-magazine prob. diff.1.72.22.3-1.5-1.51.4
Pavlov. Cond. response bias0.70.80.9-1.0-0.90.9
Pavlov. Cond. lever latency0.60.81.3-0.5-1.11.0
Pavlov. Cond. magazine entry latency0.30.31.0-1.0-0.00.1
Pavlov. Cond. change in total contacts0.91.33.4-1.90.5-0.4
Pavlov. Cond. index score0.60.71.10.61.1-0.9
Pavlov. Cond. latency score0.30.40.60.40.8-0.6
Pavlov. Cond. lever contacts1.01.42.30.51.5-1.3
Pavlov. Cond. magazine entry number0.30.30.30.6-0.60.5
Pavlov. Cond. intertrial magazine entries1.11.54.12.00.5-0.4
Pavlov. Cond. lever-magazine prob. diff.0.30.40.70.10.9-0.7
Pavlov. Cond. response bias1.01.42.40.31.5-1.3
Time in closed arm before self-admin15.817.850.17.1-1.21.3
Time in closed arm after self-admin1.31.32.8-1.70.8-0.8
Time in open arm before self-admin8.99.626.85.21.0-1.1
Time in open arm after self-admin0.91.01.2-0.8-1.11.1
Bone: periosteal estimation0.51.11.30.81.1-1.2
Bone: periosteal perimeter0.40.71.3-1.1-0.60.6
Bone: post-yield work0.50.70.70.80.8-0.9
Progressive ratio test 1 active lever presses8.89.227.6-5.3-0.30.1
Progressive ratio test 1 breakpoint6.46.720.1-4.50.1-0.2
Progressive ratio test 1 inactive lever presses0.30.30.7-0.9-0.30.3
Progressive ratio test 2 active lever presses36.739.5117.610.80.6-0.6
Progressive ratio test 2 breakpoint35.840.2119.710.90.6-0.6
Progressive ratio test 2 inactive lever presses21.324.673.3-8.60.4-0.6
Incentive Sensitization - Responses103.4104.9314.317.70.5-0.4
Incentive Sensitization - Breakpoint100.2102.2306.317.50.4-0.3
Sum of active levers in priming session hrs 5-62.52.46.72.6-0.50.6
Progressive ratio0.50.61.01.0-0.60.6
Food seeking constrained by brief footshock6.17.518.4-4.31.4-1.5
Seeking ratio, punishment vs. effort2.53.15.2-2.31.4-1.4
Retroperitoneal fat weight4.113.624.7-5.0-2.82.8
Reaction time number correct38.355.2165.512.90.2-0.1
Reaction time mean minus median59.778.9236.8-15.4-0.20.1
Reaction time mean minus median AUC77.5100.7302.1-17.4-0.30.1
Reaction time num false alarms2.02.87.72.8-0.50.6
Reaction time num false alarms AUC9.312.837.86.1-0.40.5
Reaction time trials correct on left38.355.2165.512.90.2-0.1
Reaction time trials on left35.650.9152.512.30.3-0.1
Reaction time mean13.218.450.4-7.1-1.51.6
Reaction time mean AUC12.116.345.4-6.7-1.31.4
Median of all reaction times7.410.224.2-4.9-1.81.8
Reaction time omissions15.521.263.6-8.00.1-0.3
Reaction time false alarm rate1.42.05.5-2.3-0.40.4
Reaction time premature initiation rate0.10.10.20.4-0.30.3
Reaction time premature initiations13.919.658.77.7-0.30.3
Std. dev. reaction times25.035.1102.5-10.1-1.21.2
Reaction time trials completed35.650.9152.512.30.3-0.1
Reaction time trials AUC36.352.2156.612.50.10.1
Run reversals in cocaine runway, females12.211.835.35.9-0.30.2
Run reversals in cocaine runway, males2.82.72.7-1.6-1.61.6
Latency to leave start box in cocaine runway11.612.537.06.10.5-0.5
Latency to leave start box in cocaine runway, F10.711.734.95.90.3-0.3
Latency to leave start box in cocaine runway, M0.40.40.40.60.6-0.6
Std. dev. time between licks in bursts4.75.614.5-3.81.0-1.1
Total sessions with >9 infusions0.70.81.9-1.4-0.60.5
Short access day 1 total inactive lever presses7.58.324.54.9-0.50.5
Short access day 10 total inactive lever presses14.415.947.7-6.9-0.10.3
Short access day 1 total infusions1.41.54.1-2.00.3-0.5
Short access day 10 total infusions1.41.54.5-2.10.1-0.2
Short access total infusions0.40.40.80.20.7-0.9
Short access day 1 locomotion44.647.9138.5-11.81.5-1.7
Short access day 10 total locomotion144.2161.2483.4-22.00.2-0.4
Short access total locomotion70.273.0218.3-14.80.4-0.6
One hour access (0.3 mA shock)7.58.826.45.10.2-0.1
Compulsive drug intake23.623.969.1-8.31.1-1.1
One hour access (shock baseline)0.60.71.31.1-0.60.6
Social response proportion3.33.66.52.6-1.51.5
Social responses0.20.20.60.8-0.30.2
Social time0.40.61.7-1.30.2-0.2
Soleus weight1.13.33.61.71.8-1.9
Bone: stiffness0.50.80.90.90.9-0.9
Tibialis anterior weight0.72.45.62.40.9-0.9
Time to tail flick, vehicle, before self-admin0.90.92.11.40.7-0.5
Time to tail flick, vehicle, after self-admin33.035.380.9-9.0-3.63.4
Time to tail flick, test, before self-admin3.73.610.4-3.2-0.40.3
Time to tail flick, test, after self-admin2.62.75.8-2.4-1.11.0
Delta time to tail flick, vehicle, before/after SA32.332.073.9-8.6-3.43.2
Delta time to tail flick, test, before/after SA0.50.50.70.8-0.60.6
Tibia length0.51.53.51.9-0.70.8
Ambulatory time before self-admin8.58.826.3-5.1-0.10.1
Ambulatory time after self-admin3.43.75.2-2.31.7-1.7
Bone: tissue strength1.91.92.21.51.4-1.3
Total heroin consumption1.11.33.7-1.9-0.40.3
Bone: trabecular number0.00.00.00.1-0.10.1
Bone: trabecular spacing0.30.40.50.40.7-0.7
Bone: trabecular thickness0.10.10.1-0.3-0.20.3
Bone: trabecular tissue density0.40.50.70.80.7-0.7
Water consumed over 24 hours11.613.941.26.40.4-0.6
Number of responses in last shaping day23.023.970.2-8.4-0.90.7