Zfand2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Zfand2b 0.02 0.02 3.8e-03 0.01 0.02 0.01 0.02 8.5e-03 2.8e-03 8.0e-03 4.9e-03
2 pVTA gene expression Zfand2b 0.07 0.06 1.8e-05 0.04 0.05 0.05 0.04 5.2e-04 3.6e-05 1.4e-04 1.4e-04
3 PL intron excision ratio chr9_84116547_84116848 0.02 0.02 8.9e-03 0.02 0.02 0.02 0.02 6.0e-03 6.7e-03 6.9e-03 5.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.10.10.1-0.3
Area under the delay curve1.62.52.81.71.7-1.4
BMI with tail0.00.10.10.30.3-0.4
BMI without tail0.63.33.4-1.8-1.81.8
Body weight1.14.64.7-2.2-2.22.1
Weight adjusted by age0.51.41.71.11.1-1.3
Bone surface0.20.30.70.40.4-0.8
Bone volume0.00.00.1-0.0-0.0-0.3
Breakpoint value in progressive ratio session0.20.40.50.70.7-0.7
Number of licking bursts0.00.10.2-0.4-0.50.1
Context. condit. distance diff. score0.50.60.6-0.8-0.80.8
Locomotion velocity, session 10.10.10.1-0.3-0.30.2
Locomotion distance, session 10.00.00.00.10.1-0.1
Locomotion velocity, session 21.11.31.51.11.1-1.2
Locomotion distance, session 23.65.05.22.22.2-2.3
Locomotion velocity, session 31.82.02.11.41.4-1.5
Locomotion distance, session 30.00.00.00.00.00.1
Stereotopy head waving bouts, day 30.10.10.1-0.2-0.20.3
Stereotopy head waving duration, day 30.10.10.1-0.3-0.30.4
Locomotion velocity, session 70.30.30.30.50.5-0.6
Locomotion distance, session 70.20.20.20.40.4-0.5
Stereotopy head waving bouts, day 70.30.40.40.70.7-0.6
Stereotopy head waving duration, day 70.40.50.50.70.7-0.6
Locomotion velocity, session 81.72.02.11.41.4-1.5
Locomotion distance, session 80.30.40.40.60.6-0.7
Degree of sensitization distance0.00.00.00.10.1-0.2
Degree of sensitization stereotypy0.80.91.01.01.0-0.9
Conditioned locomotion0.30.40.4-0.6-0.60.7
Cocaine response after cond. corrected5.88.79.2-3.0-3.02.7
Cocaine response after cond. not corrected5.88.48.9-3.0-3.02.7
Cocaine response before conditioning0.10.20.20.40.4-0.4
Saline control response1.92.62.71.61.6-1.6
Bone: connectivity density0.00.00.0-0.2-0.2-0.1
Bone: cortical apparent density0.10.10.10.40.4-0.1
Bone: cortical area0.10.10.20.30.3-0.4
Bone: cortical porosity0.20.20.30.50.5-0.4
Bone: cortical porosity0.00.00.10.20.2-0.2
Bone: cortical thickness0.00.00.00.00.00.1
Bone: cortical thickness0.10.10.10.20.3-0.2
Bone: cortical tissue density0.00.10.10.30.3-0.1
Condit. Reinf. active minus inactive responses0.00.00.0-0.0-0.0-0.1
Condit. Reinf. active-inactive response ratio0.40.40.5-0.6-0.70.7
Condit. Reinf. active responses0.00.00.10.10.1-0.3
Condit. Reinf. inactive responses0.20.30.40.50.5-0.7
Incentive salience index mean0.00.00.10.10.1-0.2
Condit. Reinf. lever presses0.20.30.3-0.6-0.60.4
Condit. Reinf. active minus inactive responses0.20.20.4-0.4-0.40.7
Condit. Reinf. active-inactive response ratio0.50.81.2-0.8-0.81.1
Condit. Reinf. active responses0.00.00.00.20.2-0.1
Condit. Reinf. inactive responses1.82.73.31.61.6-1.8
Condit. Reinf. lever presses0.20.30.40.60.6-0.4
Condit. Reinf. lever reinforcers received0.10.10.10.40.4-0.2
Conditioned reinforcement - actives0.20.70.80.90.8-0.8
Conditioned reinforcement - inactives0.00.10.3-0.1-0.20.6
Conditioned locomotion2.02.93.31.81.8-1.5
Patch foraging indifference point 0 sec3.911.012.63.63.4-2.9
Patch foraging indifference point AUC0.00.00.0-0.00.1-0.2
Delay disc. indifference point, 0s delay0.80.91.00.90.9-1.0
Delay disc. indifference point, 16s delay0.30.50.60.70.7-0.5
Delay disc. indifference point, 2s delay4.34.74.82.22.2-2.2
Delay disc. indifference point, 24s delay0.00.00.1-0.0-0.00.3
Delay disc. indifference point, 4s delay1.61.71.81.31.3-1.3
Delay disc. indifference point, 8s delay1.83.03.41.81.8-1.5
Indifference point function ln k0.20.50.60.70.6-0.8
Indifference point function log k0.20.50.60.70.6-0.8
Patch foraging total patch changes 0 sec3.39.711.43.43.3-2.7
Patch foraging total patch changes 12 sec3.85.15.52.32.3-2.1
Patch foraging total patch changes 18 sec1.53.54.42.12.0-1.5
Patch foraging total patch changes 24 sec0.93.13.92.01.9-1.4
Patch foraging total patch changes 6 sec2.03.44.12.02.0-1.4
Patch foraging time to switch 0 sec0.20.70.9-0.7-0.80.9
Patch foraging water rate 0 sec0.00.00.00.20.2-0.1
Patch foraging water rate 12 sec0.20.91.11.01.0-0.8
Patch foraging water rate 18 sec0.00.00.1-0.1-0.10.3
Patch foraging water rate 24 sec0.81.11.31.21.1-0.8
Patch foraging water rate 6 sec0.60.91.10.90.9-1.0
Seeking ratio, delayed vs. immediate footshock0.00.10.2-0.1-0.1-0.4
Distance traveled before self-admin0.00.00.0-0.2-0.2-0.1
Distance traveled after self-admin1.73.03.21.71.7-1.8
Extensor digitorum longus weight0.20.61.00.60.7-1.0
Bone: elastic displacement2.83.53.81.91.9-1.7
Bone: elastic work0.81.01.11.01.0-0.9
Bone: endosteal estimation1.33.24.21.61.7-2.0
Bone: endosteal perimeter0.20.40.5-0.7-0.70.3
Epididymis fat weight0.31.31.4-1.1-1.21.2
Delta time in closed arm before/after self-admin1.31.21.41.21.1-1.0
Delta time in open arm before/after self-admin3.13.73.7-1.9-1.91.9
Diff in mean of infusions in LGA sessions0.61.11.31.11.1-0.9
Delay discount exponential model param1.62.22.4-1.5-1.51.3
Extinction: sum of active levers before priming0.10.20.40.30.3-0.6
Active lever presses in extinction session 61.01.01.40.90.9-1.2
Bone: final force1.32.12.31.41.4-1.5
Bone: final moment1.82.83.01.71.7-1.7
Food consumed during 24 hour testing period0.00.00.00.10.1-0.1
Glucose0.00.00.0-0.1-0.10.1
Heart weight0.91.51.61.21.2-1.3
Delay discount hyperbolic model param2.33.03.2-1.8-1.81.6
Intermittent access intake day 1-15 change0.31.82.21.51.3-1.2
Intermittent access intake escalation0.31.82.21.51.3-1.2
Intermittent access intake escalation 21.11.82.01.41.3-1.4
Intermitt. access day 1 inactive lever presses0.00.20.3-0.4-0.50.0
Intermitt. access day 15 inactive lever presses0.20.91.5-0.7-0.91.2
Intermitt. access escalation Index0.20.60.8-0.9-0.80.7
Intermittent access day 1 total infusions0.00.00.0-0.2-0.10.0
Intermittent access day 15 total infusions0.20.50.70.80.7-0.6
Intermittent access terminal intake (last 3 days)0.40.60.70.80.8-0.7
Intermittent access total infusions0.00.00.00.10.1-0.1
Intermittent access day 1 locomotion0.00.00.00.10.2-0.2
Intermittent access day 15 total locomotion0.51.82.41.51.4-1.0
Intermittent access total locomotion0.81.01.11.11.0-0.9
Intermittent access standard deviation0.21.01.51.21.1-0.7
Left kidney weight0.00.20.3-0.5-0.40.4
Right kidney weight0.21.51.7-1.3-1.21.2
Cocaine induced anxiety0.10.30.60.40.5-0.8
Post-drug Anxiety0.40.51.00.40.5-1.0
Baseline Anxiety0.30.40.50.70.7-0.6
Tail length1.79.29.4-3.0-3.03.1
Length with tail1.98.58.6-2.9-2.92.9
Length without tail0.21.01.0-1.0-1.01.0
Times rat made contact with spout0.00.00.00.20.10.1
Lifetime Intake0.00.00.00.10.1-0.2
Liver weight, left0.00.00.0-0.1-0.10.1
Liver weight, right0.81.41.4-1.2-1.21.2
Locomotor activity1.21.92.11.31.3-1.4
Locomotor testing distance1.94.74.92.12.2-2.2
Locomotor testing rearing2.48.99.23.03.0-2.9
Locomotion in novel chamber0.20.20.40.40.4-0.6
Locomotion in novel chamber post-restriction0.10.40.6-0.6-0.50.8
Fecal boli incidents, locomotor time 10.10.20.3-0.4-0.40.5
Change in fecal boli incidents, locomotor task0.20.20.30.50.5-0.5
Time >=10cm from walls, locomotor time 10.91.11.21.01.0-1.1
Bouts of movement, locomotor time 10.00.00.0-0.2-0.20.0
Total resting periods, locomotor time 10.10.10.10.20.2-0.3
Rest time, locomotor task time 10.10.10.20.20.2-0.4
Distance moved, locomotor task time 10.00.00.10.20.30.1
Vertical activity count, locomotor time 10.00.10.10.10.10.4
Time >=10cm from walls, locomotor time 20.20.71.30.60.6-1.1
Bouts of movement, locomotor time 20.00.10.30.20.2-0.5
Total resting periods, locomotor time 20.00.20.30.30.2-0.6
Rest time, locomotor task time 20.50.91.11.11.0-0.7
Distance moved, locomotor task time 20.00.00.0-0.0-0.00.1
Vertical activity count, locomotor time 20.41.01.6-0.9-0.81.3
Light reinforcement 11.04.65.42.32.3-1.7
Light reinforcement 20.71.72.01.41.4-1.1
Bone: marrow area1.33.24.31.61.7-2.1
Bone: maximum diameter0.20.40.5-0.7-0.70.5
Bone: maximum force1.93.74.51.81.8-2.1
Bone: maximum moment2.54.75.52.12.1-2.3
Mean time between licks in bursts0.85.16.82.12.0-2.6
Mean num. licks in bursts0.30.91.21.11.1-0.7
Cd content in liver0.00.00.00.20.2-0.2
Co content in liver1.01.21.31.11.1-1.0
Cu content in liver0.20.20.2-0.4-0.40.4
Fe content in liver0.40.50.60.70.7-0.7
K content in liver0.30.30.4-0.6-0.60.6
Mg content in liver0.10.20.3-0.3-0.30.5
Mn content in liver0.10.10.10.20.2-0.3
Na content in liver0.00.00.00.00.00.1
Rb content in liver1.11.31.3-1.1-1.11.2
Se content in liver2.12.52.5-1.6-1.61.6
Sr content in liver0.20.10.10.40.4-0.4
Zn content in liver0.50.60.8-0.7-0.70.9
Bone: minimum diameter0.71.41.71.11.1-1.3
Time in familiar zone, hab. session 13.33.63.8-2.0-2.01.8
Time in novel zone, hab. session 11.41.61.81.31.3-1.1
Total zone transitions, hab. session 10.20.30.30.60.6-0.5
Total locomotion distance, hab. session 10.10.10.10.30.3-0.3
Locomotion velocity, hab. session 10.10.20.20.50.5-0.4
Time in familiar zone, hab. session 22.02.32.5-1.6-1.61.4
Time in novel zone, hab. session 22.83.13.31.81.8-1.6
Total zone transitions, hab. session 20.00.00.0-0.1-0.10.1
Total locomotion distance, hab. session 20.00.00.0-0.0-0.00.0
Locomotion velocity, hab. session 20.10.20.2-0.4-0.40.4
Novel to familiar place preference ratio0.50.60.8-0.9-0.90.6
Novelty place preference0.20.20.3-0.5-0.50.3
Time in novel zone, NPP test0.00.10.1-0.3-0.30.1
Total zone transitions, NPP test0.00.00.0-0.0-0.00.1
Total locomotion distance, NPP test0.20.30.30.50.5-0.5
Locomotion velocity, NPP test0.20.30.30.50.5-0.5
Intraocular pressure0.91.51.71.31.3-1.0
Delta distance traveled before/after self-admin3.13.43.71.91.9-1.8
Delta ambulatory time before/after self-admin3.05.25.62.42.4-2.1
Parametrial fat weight1.84.34.4-2.1-2.12.0
Pavlov. Cond. lever latency0.40.60.60.70.7-0.8
Pavlov. Cond. magazine entry latency0.00.10.1-0.2-0.20.2
Pavlov. Cond. change in total contacts0.30.40.4-0.6-0.60.6
Pavlov. Cond. index score1.31.71.7-1.3-1.31.3
Pavlov. Cond. latency score0.91.21.2-1.1-1.11.1
Pavlov. Cond. lever contacts0.81.01.0-1.0-1.01.0
Pavlov. Cond. magazine entry number0.10.10.20.40.4-0.4
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.3-0.30.3
Pavlov. Cond. lever-magazine prob. diff.1.82.22.3-1.5-1.51.5
Pavlov. Cond. response bias0.60.70.7-0.8-0.80.9
Pavlov. Cond. lever latency0.71.01.3-1.1-1.10.8
Pavlov. Cond. magazine entry latency0.00.00.0-0.1-0.10.0
Pavlov. Cond. change in total contacts0.10.10.20.40.3-0.4
Pavlov. Cond. index score0.40.70.80.90.8-0.8
Pavlov. Cond. latency score0.30.40.50.70.6-0.6
Pavlov. Cond. lever contacts0.91.31.61.21.2-1.0
Pavlov. Cond. magazine entry number0.10.20.2-0.5-0.40.4
Pavlov. Cond. intertrial magazine entries0.10.20.30.50.5-0.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.50.70.6-0.6
Pavlov. Cond. response bias0.81.21.41.21.1-0.9
Time in closed arm before self-admin1.01.72.0-1.4-1.31.1
Time in closed arm after self-admin0.70.80.91.00.9-0.9
Time in open arm before self-admin1.21.51.71.21.2-1.3
Time in open arm after self-admin0.80.91.0-1.0-1.00.9
Bone: periosteal estimation0.71.62.21.11.1-1.5
Bone: periosteal perimeter0.10.20.3-0.5-0.50.3
Bone: post-yield work0.30.50.80.60.6-0.9
Progressive ratio test 1 active lever presses0.20.30.3-0.5-0.50.5
Progressive ratio test 1 breakpoint0.00.10.1-0.3-0.30.3
Progressive ratio test 1 inactive lever presses0.40.91.1-1.0-1.00.8
Progressive ratio test 2 active lever presses0.20.20.40.40.4-0.7
Progressive ratio test 2 breakpoint0.10.20.30.30.3-0.6
Progressive ratio test 2 inactive lever presses0.00.00.00.20.1-0.2
Incentive Sensitization - Responses0.20.40.80.50.5-0.9
Incentive Sensitization - Breakpoint0.10.20.50.30.3-0.7
Sum of active levers in priming session hrs 5-60.30.20.4-0.6-0.60.2
Progressive ratio0.20.51.1-0.4-0.41.0
Food seeking constrained by brief footshock1.41.72.21.51.4-0.9
Seeking ratio, punishment vs. effort0.92.02.51.31.3-1.6
Retroperitoneal fat weight2.09.09.0-3.0-3.03.0
Reaction time number correct0.00.00.10.20.2-0.1
Reaction time mean minus median0.00.10.3-0.2-0.30.5
Reaction time mean minus median AUC0.00.30.5-0.3-0.40.7
Reaction time num false alarms0.10.20.3-0.5-0.40.5
Reaction time num false alarms AUC0.10.10.1-0.4-0.30.4
Reaction time trials correct on left0.00.00.10.20.2-0.1
Reaction time trials on left0.00.00.10.20.2-0.1
Reaction time mean1.43.24.2-1.6-1.72.0
Reaction time mean AUC1.02.53.3-1.4-1.51.8
Median of all reaction times2.54.05.1-1.8-1.92.3
Reaction time omissions0.00.00.00.00.00.1
Reaction time false alarm rate0.10.10.2-0.4-0.40.4
Reaction time premature initiation rate0.00.10.1-0.3-0.30.1
Reaction time premature initiations0.00.10.1-0.3-0.20.0
Std. dev. reaction times0.51.72.1-1.2-1.31.5
Reaction time trials completed0.00.00.10.20.2-0.1
Reaction time trials AUC0.00.00.00.10.10.0
Run reversals in cocaine runway, females0.00.00.1-0.1-0.1-0.3
Run reversals in cocaine runway, males2.42.72.9-1.7-1.71.5
Latency to leave start box in cocaine runway0.10.20.20.50.5-0.4
Latency to leave start box in cocaine runway, F0.00.00.0-0.2-0.10.2
Latency to leave start box in cocaine runway, M0.90.80.90.90.9-0.9
Std. dev. time between licks in bursts0.61.11.31.01.0-1.1
Total sessions with >9 infusions0.10.10.10.30.3-0.3
Short access day 1 total inactive lever presses0.00.10.1-0.3-0.20.2
Short access day 10 total inactive lever presses0.00.30.3-0.5-0.60.6
Short access day 1 total infusions0.10.20.20.50.5-0.3
Short access day 10 total infusions0.10.10.1-0.4-0.30.3
Short access total infusions0.00.00.00.20.2-0.2
Short access day 1 locomotion1.22.02.51.61.5-1.0
Short access day 10 total locomotion0.10.61.01.00.9-0.1
Short access total locomotion0.30.50.70.90.8-0.4
One hour access (0.3 mA shock)0.00.00.10.30.2-0.1
Compulsive drug intake0.50.70.90.90.9-0.7
One hour access (shock baseline)0.00.10.1-0.3-0.40.3
Social response proportion1.21.51.8-1.3-1.31.0
Social responses0.00.00.1-0.2-0.20.0
Social time0.00.00.10.20.2-0.2
Soleus weight1.33.84.01.91.9-2.0
Bone: stiffness0.81.41.91.11.1-1.4
Tibialis anterior weight0.41.21.31.11.1-1.1
Time to tail flick, vehicle, before self-admin0.20.20.30.50.5-0.5
Time to tail flick, vehicle, after self-admin4.89.79.9-3.1-3.23.1
Time to tail flick, test, before self-admin0.70.91.1-0.9-0.81.1
Time to tail flick, test, after self-admin0.60.70.7-0.8-0.80.8
Delta time to tail flick, vehicle, before/after SA7.68.28.5-2.8-2.82.9
Delta time to tail flick, test, before/after SA0.00.00.1-0.0-0.0-0.3
Tibia length0.10.40.5-0.7-0.70.5
Ambulatory time before self-admin0.00.00.1-0.2-0.30.0
Ambulatory time after self-admin2.43.94.02.02.0-1.9
Bone: tissue strength1.81.92.11.51.4-1.2
Total heroin consumption0.70.80.8-0.9-0.90.9
Bone: trabecular number0.00.10.20.10.1-0.4
Bone: trabecular spacing0.10.20.30.50.5-0.3
Bone: trabecular thickness0.00.00.00.0-0.0-0.1
Bone: trabecular tissue density0.30.60.90.70.7-0.9
Water consumed over 24 hours0.10.10.20.20.3-0.4
Number of responses in last shaping day1.11.51.6-1.3-1.31.1