Zbtb3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Zbtb3 0.04 0.03 7.8e-03 0.03 0.03 0.03 0.03 6.4e-03 9.3e-03 7.3e-03 1.0e-02
2 Adipose alternative polyA NM_001109162.2 0.03 0.02 6.3e-04 0.03 0.01 0.02 0.02 3.7e-04 8.2e-03 3.4e-03 4.0e-03
3 Adipose alternative polyA XM_006230992.4 0.03 0.02 1.0e-03 0.03 0.01 0.02 0.01 5.7e-04 9.4e-03 5.5e-03 9.4e-03
4 Liver alternative polyA NM_001109162.2 0.04 0.03 9.9e-03 0 0.01 0 0 1.4e-01 3.0e-02 3.1e-01 2.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.51.00.50.7-0.7-1.0
Area under the delay curve0.20.20.90.00.0-0.0-1.0
BMI with tail2.99.416.12.82.6-2.6-4.0
BMI without tail1.32.64.91.51.3-1.3-2.2
Body weight3.815.918.04.23.9-3.9-4.0
Weight adjusted by age1.51.72.21.51.4-1.4-0.8
Bone surface1.73.13.71.81.9-1.9-1.3
Bone volume0.71.21.51.11.2-1.2-0.8
Breakpoint value in progressive ratio session1.71.92.61.51.6-1.60.1
Number of licking bursts0.00.00.00.1-0.10.1-0.1
Context. condit. distance diff. score0.50.60.8-0.9-0.80.8-0.7
Locomotion velocity, session 10.20.31.0-0.2-0.10.1-1.0
Locomotion distance, session 10.81.03.00.50.6-0.6-1.7
Locomotion velocity, session 22.52.93.11.81.7-1.7-1.6
Locomotion distance, session 20.20.30.90.30.3-0.3-0.9
Locomotion velocity, session 30.81.03.40.50.3-0.3-1.8
Locomotion distance, session 30.10.10.40.30.2-0.2-0.6
Stereotopy head waving bouts, day 30.50.61.7-0.5-0.50.5-1.3
Stereotopy head waving duration, day 30.40.50.9-0.6-0.60.6-1.0
Locomotion velocity, session 70.10.10.2-0.3-0.30.3-0.4
Locomotion distance, session 70.30.40.9-0.5-0.50.5-1.0
Stereotopy head waving bouts, day 70.10.10.10.30.3-0.3-0.1
Stereotopy head waving duration, day 71.82.12.71.61.6-1.6-1.0
Locomotion velocity, session 80.10.10.2-0.4-0.30.3-0.4
Locomotion distance, session 80.40.60.7-0.8-0.70.7-0.8
Degree of sensitization distance0.40.41.1-0.4-0.30.3-1.1
Degree of sensitization stereotypy0.70.81.21.11.0-1.0-0.1
Conditioned locomotion0.60.70.80.80.9-0.9-0.7
Cocaine response after cond. corrected0.70.81.5-1.2-0.90.9-0.5
Cocaine response after cond. not corrected0.50.61.1-1.0-0.70.7-0.3
Cocaine response before conditioning0.40.50.70.80.6-0.60.6
Saline control response2.43.23.92.01.8-1.8-1.5
Bone: connectivity density1.72.73.21.61.6-1.6-1.8
Bone: cortical apparent density0.30.40.60.70.8-0.80.0
Bone: cortical area0.81.11.61.31.2-1.2-0.6
Bone: cortical porosity0.20.20.5-0.3-0.20.20.7
Bone: cortical porosity0.10.10.20.00.2-0.20.4
Bone: cortical thickness2.54.15.72.42.2-2.2-1.0
Bone: cortical thickness0.40.50.60.70.7-0.7-0.5
Bone: cortical tissue density0.40.50.70.80.8-0.80.0
Condit. Reinf. active minus inactive responses0.91.01.21.11.1-1.1-0.7
Condit. Reinf. active-inactive response ratio0.40.40.60.60.7-0.7-0.2
Condit. Reinf. active responses0.80.91.21.11.0-1.0-0.7
Condit. Reinf. inactive responses0.00.00.00.1-0.00.00.0
Incentive salience index mean1.31.61.71.31.2-1.2-1.2
Condit. Reinf. lever presses0.81.11.61.10.9-0.9-1.3
Condit. Reinf. active minus inactive responses0.50.61.6-0.5-0.60.61.3
Condit. Reinf. active-inactive response ratio0.80.81.4-0.8-0.80.81.2
Condit. Reinf. active responses0.00.10.20.20.0-0.00.4
Condit. Reinf. inactive responses0.20.20.20.40.4-0.4-0.5
Condit. Reinf. lever presses0.91.21.61.31.2-1.2-0.3
Condit. Reinf. lever reinforcers received0.10.20.20.50.4-0.40.4
Conditioned reinforcement - actives2.32.33.4-1.5-1.41.41.8
Conditioned reinforcement - inactives0.70.80.9-0.9-1.01.00.8
Conditioned locomotion1.51.82.4-1.5-1.51.50.5
Patch foraging indifference point 0 sec0.50.80.90.90.9-0.9-0.8
Patch foraging indifference point AUC2.22.53.31.81.8-1.80.1
Delay disc. indifference point, 0s delay0.60.71.5-0.6-0.70.7-1.2
Delay disc. indifference point, 16s delay0.20.20.30.30.3-0.3-0.6
Delay disc. indifference point, 2s delay0.20.20.3-0.5-0.40.4-0.4
Delay disc. indifference point, 24s delay0.30.30.80.30.4-0.4-0.9
Delay disc. indifference point, 4s delay0.80.82.90.40.4-0.4-1.7
Delay disc. indifference point, 8s delay0.30.30.4-0.6-0.60.6-0.4
Indifference point function ln k3.14.46.1-2.5-2.32.3-0.7
Indifference point function log k3.14.46.1-2.5-2.32.3-0.7
Patch foraging total patch changes 0 sec0.50.80.90.90.9-0.9-0.9
Patch foraging total patch changes 12 sec5.87.59.83.03.1-3.1-1.2
Patch foraging total patch changes 18 sec0.50.71.10.71.0-1.00.2
Patch foraging total patch changes 24 sec7.49.010.53.13.2-3.2-2.3
Patch foraging total patch changes 6 sec1.32.02.41.31.5-1.5-1.2
Patch foraging time to switch 0 sec0.30.40.50.60.7-0.7-0.7
Patch foraging water rate 0 sec0.30.50.6-0.8-0.70.70.6
Patch foraging water rate 12 sec1.21.92.5-1.5-1.61.60.2
Patch foraging water rate 18 sec0.70.91.0-1.0-0.90.9-1.0
Patch foraging water rate 24 sec1.11.52.2-1.5-1.31.30.3
Patch foraging water rate 6 sec1.01.42.0-1.3-1.41.40.0
Seeking ratio, delayed vs. immediate footshock0.00.00.10.00.1-0.1-0.4
Distance traveled before self-admin2.12.33.11.71.7-1.7-0.5
Distance traveled after self-admin0.40.40.60.70.7-0.70.4
Extensor digitorum longus weight6.525.729.85.55.2-5.2-4.3
Bone: elastic displacement0.50.60.7-0.8-0.80.80.6
Bone: elastic work0.70.91.10.91.0-1.0-1.0
Bone: endosteal estimation0.81.72.5-1.6-1.41.4-0.2
Bone: endosteal perimeter1.22.43.2-1.8-1.71.70.6
Epididymis fat weight0.20.50.8-0.6-0.90.9-0.5
Delta time in closed arm before/after self-admin2.22.25.61.01.0-1.0-2.4
Delta time in open arm before/after self-admin1.31.31.71.31.3-1.30.1
Diff in mean of infusions in LGA sessions1.31.52.01.41.4-1.4-0.1
Delay discount exponential model param0.20.20.8-0.0-0.10.10.9
Extinction: sum of active levers before priming3.73.74.72.12.2-2.2-1.0
Active lever presses in extinction session 62.22.13.11.81.6-1.60.1
Bone: final force2.03.33.61.91.9-1.9-1.6
Bone: final moment2.03.23.51.91.9-1.9-1.5
Food consumed during 24 hour testing period0.10.20.6-0.1-0.00.00.8
Glucose2.33.44.5-2.0-2.12.10.8
Heart weight0.81.11.4-1.2-1.21.2-0.6
Delay discount hyperbolic model param0.20.21.0-0.0-0.10.11.0
Intermittent access intake day 1-15 change2.22.25.2-1.2-1.01.02.3
Intermittent access intake escalation1.41.43.7-0.9-0.70.71.9
Intermittent access intake escalation 20.50.51.8-0.10.0-0.01.3
Intermitt. access day 1 inactive lever presses2.02.12.8-1.5-1.71.70.9
Intermitt. access day 15 inactive lever presses0.10.10.10.30.1-0.1-0.4
Intermitt. access escalation Index0.40.30.6-0.5-0.50.5-0.8
Intermittent access day 1 total infusions0.80.91.4-0.9-0.90.9-1.2
Intermittent access day 15 total infusions2.62.93.8-1.9-1.81.81.1
Intermittent access terminal intake (last 3 days)0.30.30.6-0.7-0.60.60.2
Intermittent access total infusions0.60.61.0-1.0-0.90.9-0.0
Intermittent access day 1 locomotion1.01.13.9-0.4-0.30.3-2.0
Intermittent access day 15 total locomotion0.10.10.1-0.3-0.30.3-0.4
Intermittent access total locomotion0.40.41.6-0.2-0.20.2-1.3
Intermittent access standard deviation1.71.83.3-1.2-1.11.11.8
Left kidney weight0.00.10.10.30.1-0.1-0.4
Right kidney weight0.10.20.30.50.5-0.5-0.3
Cocaine induced anxiety0.30.30.40.50.7-0.70.0
Post-drug Anxiety0.50.60.80.90.9-0.90.2
Baseline Anxiety0.80.91.21.11.0-1.0-0.7
Tail length0.72.13.11.81.5-1.5-0.8
Length with tail2.17.810.53.22.9-2.9-2.0
Length without tail2.04.35.52.32.2-2.2-1.5
Times rat made contact with spout0.10.10.10.30.4-0.4-0.2
Lifetime Intake0.70.71.1-1.0-0.90.9-0.4
Liver weight, left0.20.30.5-0.7-0.50.50.4
Liver weight, right0.10.20.80.00.2-0.2-0.9
Locomotor activity0.60.91.2-1.1-1.11.10.1
Locomotor testing distance0.81.31.7-1.3-1.31.3-0.4
Locomotor testing rearing0.81.21.7-1.3-1.31.30.1
Locomotion in novel chamber1.82.22.5-1.5-1.61.61.3
Locomotion in novel chamber post-restriction2.93.54.0-1.9-2.02.01.4
Fecal boli incidents, locomotor time 10.40.51.5-0.3-0.30.31.2
Change in fecal boli incidents, locomotor task0.90.80.9-0.9-1.01.0-0.8
Time >=10cm from walls, locomotor time 12.12.12.7-1.3-1.61.61.1
Bouts of movement, locomotor time 10.60.72.50.50.2-0.21.6
Total resting periods, locomotor time 10.50.61.90.50.3-0.31.4
Rest time, locomotor task time 11.31.41.8-1.3-1.01.01.4
Distance moved, locomotor task time 10.30.30.60.60.4-0.4-0.8
Vertical activity count, locomotor time 10.60.71.0-0.8-1.01.00.3
Time >=10cm from walls, locomotor time 20.40.41.6-0.1-0.20.21.3
Bouts of movement, locomotor time 21.31.31.81.31.3-1.3-0.4
Total resting periods, locomotor time 20.60.71.00.91.0-1.0-0.2
Rest time, locomotor task time 22.83.24.5-2.1-1.91.91.3
Distance moved, locomotor task time 20.40.40.70.90.7-0.70.2
Vertical activity count, locomotor time 20.10.10.1-0.1-0.30.30.4
Light reinforcement 10.10.20.5-0.3-0.30.30.7
Light reinforcement 20.30.41.1-0.3-0.50.51.1
Bone: marrow area0.91.92.9-1.7-1.61.6-0.1
Bone: maximum diameter0.10.20.30.50.5-0.5-0.2
Bone: maximum force2.84.84.92.22.2-2.2-2.2
Bone: maximum moment2.64.54.72.22.1-2.1-2.1
Mean time between licks in bursts1.01.42.90.91.0-1.0-1.7
Mean num. licks in bursts0.00.00.1-0.2-0.00.00.2
Cd content in liver1.11.21.9-1.4-0.90.91.0
Co content in liver1.82.12.6-1.6-1.41.41.3
Cu content in liver0.20.30.40.40.5-0.5-0.7
Fe content in liver0.00.00.0-0.1-0.10.10.1
K content in liver1.11.11.51.20.9-0.9-1.2
Mg content in liver0.60.61.60.70.4-0.4-1.3
Mn content in liver2.12.43.31.81.6-1.6-0.8
Na content in liver0.50.50.90.90.7-0.7-0.3
Rb content in liver1.31.72.3-1.4-1.51.50.0
Se content in liver0.20.20.40.60.5-0.50.2
Sr content in liver5.14.75.92.42.4-2.4-1.0
Zn content in liver3.84.25.02.22.2-2.2-1.3
Bone: minimum diameter0.30.60.8-0.9-0.90.9-0.3
Time in familiar zone, hab. session 10.20.20.30.30.4-0.4-0.5
Time in novel zone, hab. session 11.41.31.7-1.2-1.31.30.7
Total zone transitions, hab. session 10.20.20.30.50.5-0.5-0.4
Total locomotion distance, hab. session 10.10.10.1-0.4-0.30.3-0.3
Locomotion velocity, hab. session 10.10.10.20.20.2-0.2-0.4
Time in familiar zone, hab. session 20.20.20.4-0.3-0.40.40.6
Time in novel zone, hab. session 20.60.61.10.60.6-0.6-1.1
Total zone transitions, hab. session 21.62.13.31.31.3-1.3-1.8
Total locomotion distance, hab. session 20.30.31.20.20.2-0.2-1.1
Locomotion velocity, hab. session 20.20.20.80.10.1-0.1-0.9
Novel to familiar place preference ratio1.92.02.61.61.5-1.5-0.9
Novelty place preference1.11.21.61.31.2-1.2-0.6
Time in novel zone, NPP test1.21.31.71.31.2-1.2-0.7
Total zone transitions, NPP test1.01.51.81.11.2-1.2-1.4
Total locomotion distance, NPP test0.10.20.8-0.00.0-0.0-0.9
Locomotion velocity, NPP test0.10.10.3-0.1-0.10.1-0.6
Intraocular pressure0.20.31.1-0.2-0.30.31.0
Delta distance traveled before/after self-admin0.40.50.7-0.8-0.70.70.4
Delta ambulatory time before/after self-admin0.80.81.2-1.1-1.01.00.5
Parametrial fat weight1.12.12.7-1.6-1.71.70.5
Pavlov. Cond. lever latency1.21.61.6-1.3-1.21.21.3
Pavlov. Cond. magazine entry latency1.01.31.61.31.2-1.2-0.6
Pavlov. Cond. change in total contacts0.30.30.40.60.6-0.60.2
Pavlov. Cond. index score0.60.70.91.01.0-1.0-0.2
Pavlov. Cond. latency score0.50.60.80.90.9-0.9-0.5
Pavlov. Cond. lever contacts0.30.30.30.60.6-0.6-0.6
Pavlov. Cond. magazine entry number0.70.81.1-1.0-1.01.0-0.3
Pavlov. Cond. intertrial magazine entries0.20.20.80.10.0-0.00.9
Pavlov. Cond. lever-magazine prob. diff.0.70.91.21.11.1-1.1-0.2
Pavlov. Cond. response bias0.70.81.11.01.0-1.0-0.1
Pavlov. Cond. lever latency0.50.70.8-0.8-0.90.90.6
Pavlov. Cond. magazine entry latency4.04.65.92.42.4-2.4-0.9
Pavlov. Cond. change in total contacts1.52.12.91.61.7-1.7-0.0
Pavlov. Cond. index score2.53.34.32.02.1-2.1-0.7
Pavlov. Cond. latency score2.32.83.71.91.9-1.9-0.7
Pavlov. Cond. lever contacts0.40.60.80.80.9-0.90.0
Pavlov. Cond. magazine entry number6.78.210.6-3.2-3.33.31.3
Pavlov. Cond. intertrial magazine entries1.82.42.6-1.6-1.61.61.4
Pavlov. Cond. lever-magazine prob. diff.2.93.74.92.12.2-2.2-0.7
Pavlov. Cond. response bias1.62.23.01.61.7-1.7-0.5
Time in closed arm before self-admin0.10.10.4-0.1-0.00.00.6
Time in closed arm after self-admin0.50.50.7-0.8-0.80.8-0.2
Time in open arm before self-admin0.80.91.1-1.0-1.11.1-0.5
Time in open arm after self-admin0.10.10.10.10.2-0.20.3
Bone: periosteal estimation0.00.10.2-0.1-0.00.0-0.5
Bone: periosteal perimeter0.00.00.00.00.0-0.00.1
Bone: post-yield work0.10.10.2-0.5-0.20.2-0.4
Progressive ratio test 1 active lever presses1.81.92.4-1.5-1.51.50.9
Progressive ratio test 1 breakpoint2.22.32.7-1.6-1.61.61.1
Progressive ratio test 1 inactive lever presses0.20.21.00.10.0-0.0-1.0
Progressive ratio test 2 active lever presses1.41.51.8-1.3-1.31.30.8
Progressive ratio test 2 breakpoint2.52.83.1-1.8-1.71.71.4
Progressive ratio test 2 inactive lever presses0.50.60.9-0.8-0.90.90.2
Incentive Sensitization - Responses0.10.10.10.30.3-0.3-0.3
Incentive Sensitization - Breakpoint0.00.00.00.20.2-0.2-0.2
Sum of active levers in priming session hrs 5-61.41.41.71.11.1-1.11.3
Progressive ratio0.00.00.10.30.2-0.2-0.1
Food seeking constrained by brief footshock0.10.10.2-0.3-0.50.5-0.2
Seeking ratio, punishment vs. effort0.10.20.3-0.5-0.40.4-0.4
Retroperitoneal fat weight1.96.28.2-2.8-2.92.90.5
Reaction time number correct0.60.91.21.10.9-0.9-0.7
Reaction time mean minus median0.70.91.80.60.8-0.81.3
Reaction time mean minus median AUC0.50.62.00.30.5-0.51.4
Reaction time num false alarms0.20.30.5-0.7-0.50.5-0.2
Reaction time num false alarms AUC0.10.10.3-0.20.1-0.1-0.5
Reaction time trials correct on left0.60.91.21.10.9-0.9-0.7
Reaction time trials on left0.60.91.31.11.0-1.0-0.7
Reaction time mean0.40.51.9-0.30.0-0.01.4
Reaction time mean AUC0.40.62.1-0.4-0.10.11.4
Median of all reaction times0.10.10.5-0.10.2-0.20.7
Reaction time omissions0.20.30.70.00.4-0.40.8
Reaction time false alarm rate0.20.30.7-0.8-0.50.5-0.2
Reaction time premature initiation rate4.45.97.52.42.3-2.3-2.7
Reaction time premature initiations5.47.68.52.92.7-2.7-2.7
Std. dev. reaction times0.71.03.8-0.3-0.00.01.9
Reaction time trials completed0.60.91.31.11.0-1.0-0.7
Reaction time trials AUC0.50.71.01.00.8-0.8-0.7
Run reversals in cocaine runway, females2.12.06.10.80.8-0.8-2.5
Run reversals in cocaine runway, males0.60.60.7-0.8-0.80.80.7
Latency to leave start box in cocaine runway0.20.20.3-0.6-0.40.4-0.4
Latency to leave start box in cocaine runway, F0.00.00.10.10.2-0.2-0.3
Latency to leave start box in cocaine runway, M2.72.53.5-1.9-1.71.70.8
Std. dev. time between licks in bursts0.10.20.3-0.4-0.30.3-0.6
Total sessions with >9 infusions1.31.52.2-1.5-1.31.3-0.4
Short access day 1 total inactive lever presses0.70.81.0-1.0-1.01.0-0.6
Short access day 10 total inactive lever presses2.22.43.3-1.7-1.81.80.3
Short access day 1 total infusions0.80.81.2-1.1-1.01.0-0.5
Short access day 10 total infusions0.50.61.8-0.5-0.40.4-1.4
Short access total infusions0.60.71.3-0.8-0.70.7-1.1
Short access day 1 locomotion0.70.83.00.10.2-0.2-1.7
Short access day 10 total locomotion0.40.41.60.00.0-0.0-1.3
Short access total locomotion1.01.03.80.30.3-0.3-1.9
One hour access (0.3 mA shock)3.43.94.9-2.2-2.22.21.1
Compulsive drug intake0.90.91.11.00.9-0.9-1.0
One hour access (shock baseline)4.85.66.1-2.5-2.42.42.2
Social response proportion0.20.20.20.50.3-0.3-0.4
Social responses0.10.10.10.30.2-0.20.3
Social time0.00.00.1-0.1-0.10.10.3
Soleus weight2.57.49.2-3.0-3.03.01.5
Bone: stiffness0.81.21.61.31.2-1.2-0.6
Tibialis anterior weight9.131.137.76.16.0-6.0-3.8
Time to tail flick, vehicle, before self-admin0.70.71.40.60.7-0.7-1.2
Time to tail flick, vehicle, after self-admin0.70.82.00.60.6-0.6-1.4
Time to tail flick, test, before self-admin1.31.24.20.40.6-0.6-2.0
Time to tail flick, test, after self-admin0.10.10.1-0.4-0.30.30.3
Delta time to tail flick, vehicle, before/after SA0.00.00.10.0-0.00.0-0.3
Delta time to tail flick, test, before/after SA0.90.83.0-0.1-0.20.21.7
Tibia length1.23.45.42.32.0-2.0-0.4
Ambulatory time before self-admin1.61.72.71.61.4-1.40.0
Ambulatory time after self-admin0.30.30.40.60.7-0.70.2
Bone: tissue strength0.20.20.2-0.2-0.50.50.3
Total heroin consumption3.13.64.82.22.2-2.2-0.3
Bone: trabecular number0.81.21.61.01.1-1.1-1.3
Bone: trabecular spacing0.30.40.4-0.5-0.60.60.6
Bone: trabecular thickness0.30.30.5-0.6-0.40.40.7
Bone: trabecular tissue density4.56.37.4-2.7-2.62.62.1
Water consumed over 24 hours0.40.50.60.80.8-0.8-0.3
Number of responses in last shaping day0.10.10.3-0.20.1-0.1-0.5