Wt1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Wt1 0.12 0.13 1.9e-09 0.07 0.06 0.06 0.07 2.7e-08 4.9e-07 1.4e-07 1.8e-08
2 Adipose alternative TSS XM_017591477.3 0.02 0.02 9.8e-03 0.01 0.01 0 0.01 2.9e-02 3.3e-02 1.1e-01 4.8e-02
3 Adipose alternative TSS XM_063283114.1 0.04 0.04 4.6e-04 0.02 0.02 0.02 0.02 1.9e-03 3.0e-03 5.5e-03 3.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.41.41.21.2-1.2
Area under the delay curve0.30.40.4-0.6-0.60.6
BMI with tail0.00.00.00.10.1-0.1
BMI without tail0.20.70.80.80.9-0.9
Body weight0.62.52.51.61.6-1.6
Weight adjusted by age0.30.50.5-0.7-0.70.7
Bone surface0.40.60.60.80.8-0.8
Bone volume0.91.61.61.31.3-1.3
Breakpoint value in progressive ratio session0.60.70.8-0.9-0.80.8
Number of licking bursts0.40.60.60.80.8-0.8
Context. condit. distance diff. score4.45.45.42.32.3-2.3
Locomotion velocity, session 11.61.71.7-1.3-1.31.3
Locomotion distance, session 10.20.20.2-0.4-0.40.4
Locomotion velocity, session 20.00.00.00.00.0-0.0
Locomotion distance, session 20.00.00.0-0.0-0.00.0
Locomotion velocity, session 30.10.10.10.40.4-0.4
Locomotion distance, session 30.10.10.10.30.3-0.3
Stereotopy head waving bouts, day 30.10.10.1-0.3-0.30.3
Stereotopy head waving duration, day 30.20.30.30.50.5-0.5
Locomotion velocity, session 70.00.00.00.20.2-0.2
Locomotion distance, session 70.10.20.2-0.4-0.40.4
Stereotopy head waving bouts, day 70.00.00.0-0.1-0.10.1
Stereotopy head waving duration, day 70.00.00.0-0.1-0.10.1
Locomotion velocity, session 80.20.20.20.40.4-0.4
Locomotion distance, session 82.73.93.92.02.0-2.0
Degree of sensitization distance0.40.40.4-0.7-0.70.7
Degree of sensitization stereotypy0.10.10.1-0.4-0.40.4
Conditioned locomotion6.17.07.0-2.7-2.62.6
Cocaine response after cond. corrected4.14.94.9-2.2-2.22.2
Cocaine response after cond. not corrected1.11.31.3-1.2-1.21.2
Cocaine response before conditioning6.67.97.92.82.8-2.8
Saline control response0.00.10.10.30.3-0.3
Bone: connectivity density0.81.21.31.11.1-1.1
Bone: cortical apparent density0.10.10.10.40.4-0.4
Bone: cortical area0.61.01.01.01.0-1.0
Bone: cortical porosity0.30.30.3-0.6-0.60.6
Bone: cortical porosity0.10.10.1-0.4-0.40.4
Bone: cortical thickness0.10.10.10.30.3-0.3
Bone: cortical thickness1.21.41.4-1.2-1.21.2
Bone: cortical tissue density0.10.10.10.30.3-0.3
Condit. Reinf. active minus inactive responses2.73.03.01.71.7-1.7
Condit. Reinf. active-inactive response ratio7.78.28.22.92.9-2.9
Condit. Reinf. active responses0.40.50.50.70.7-0.7
Condit. Reinf. inactive responses2.42.92.9-1.7-1.71.7
Incentive salience index mean1.62.02.01.41.4-1.4
Condit. Reinf. lever presses0.30.40.40.70.7-0.7
Condit. Reinf. active minus inactive responses1.72.22.21.51.5-1.5
Condit. Reinf. active-inactive response ratio4.55.25.22.32.3-2.3
Condit. Reinf. active responses1.01.41.41.21.2-1.2
Condit. Reinf. inactive responses0.00.00.0-0.2-0.20.2
Condit. Reinf. lever presses1.72.42.41.51.6-1.6
Condit. Reinf. lever reinforcers received1.21.61.61.31.3-1.3
Conditioned reinforcement - actives3.56.16.22.52.5-2.5
Conditioned reinforcement - inactives7.611.111.33.43.3-3.3
Conditioned locomotion3.64.74.72.22.2-2.2
Patch foraging indifference point 0 sec0.00.00.0-0.0-0.00.0
Patch foraging indifference point AUC0.60.80.8-0.9-0.90.9
Delay disc. indifference point, 0s delay0.00.00.0-0.0-0.00.0
Delay disc. indifference point, 16s delay0.80.90.9-0.9-0.90.9
Delay disc. indifference point, 2s delay0.00.00.00.10.1-0.1
Delay disc. indifference point, 24s delay0.60.60.6-0.8-0.80.8
Delay disc. indifference point, 4s delay0.60.60.7-0.8-0.80.8
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.30.3
Indifference point function ln k0.30.60.60.70.7-0.7
Indifference point function log k0.30.60.60.70.7-0.7
Patch foraging total patch changes 0 sec0.00.00.00.00.0-0.0
Patch foraging total patch changes 12 sec0.20.30.30.50.5-0.5
Patch foraging total patch changes 18 sec0.00.00.0-0.0-0.00.0
Patch foraging total patch changes 24 sec0.00.00.0-0.1-0.10.1
Patch foraging total patch changes 6 sec0.00.00.0-0.1-0.10.1
Patch foraging time to switch 0 sec0.40.80.80.90.9-0.9
Patch foraging water rate 0 sec0.00.00.0-0.1-0.10.1
Patch foraging water rate 12 sec0.00.10.1-0.3-0.30.3
Patch foraging water rate 18 sec0.20.40.40.60.6-0.6
Patch foraging water rate 24 sec0.00.00.00.10.1-0.1
Patch foraging water rate 6 sec0.10.10.2-0.4-0.40.4
Seeking ratio, delayed vs. immediate footshock0.50.70.70.80.8-0.8
Distance traveled before self-admin0.00.10.10.20.2-0.2
Distance traveled after self-admin0.40.50.50.70.7-0.7
Extensor digitorum longus weight0.10.50.5-0.7-0.70.7
Bone: elastic displacement0.50.50.5-0.7-0.70.7
Bone: elastic work0.00.00.0-0.0-0.10.1
Bone: endosteal estimation0.00.10.1-0.3-0.30.3
Bone: endosteal perimeter0.20.40.40.60.7-0.7
Epididymis fat weight1.13.93.92.02.0-2.0
Delta time in closed arm before/after self-admin0.10.10.1-0.3-0.30.3
Delta time in open arm before/after self-admin0.20.20.2-0.5-0.50.5
Diff in mean of infusions in LGA sessions0.10.20.2-0.4-0.40.4
Delay discount exponential model param0.40.50.50.70.7-0.7
Extinction: sum of active levers before priming0.00.00.0-0.2-0.10.1
Active lever presses in extinction session 60.90.91.00.91.0-1.0
Bone: final force0.20.30.30.60.5-0.5
Bone: final moment0.10.20.20.40.4-0.4
Food consumed during 24 hour testing period3.54.84.82.22.2-2.2
Glucose2.13.33.31.81.8-1.8
Heart weight0.20.40.4-0.6-0.60.6
Delay discount hyperbolic model param0.50.60.60.80.8-0.8
Intermittent access intake day 1-15 change0.50.91.01.01.0-1.0
Intermittent access intake escalation0.51.01.11.11.0-1.0
Intermittent access intake escalation 20.50.60.70.80.8-0.8
Intermitt. access day 1 inactive lever presses0.72.82.91.71.7-1.7
Intermitt. access day 15 inactive lever presses1.12.22.31.51.5-1.5
Intermitt. access escalation Index0.60.90.9-0.9-0.90.9
Intermittent access day 1 total infusions2.33.73.81.91.9-1.9
Intermittent access day 15 total infusions2.63.84.12.01.9-1.9
Intermittent access terminal intake (last 3 days)1.72.32.41.61.5-1.5
Intermittent access total infusions2.42.83.01.71.6-1.6
Intermittent access day 1 locomotion2.22.82.91.71.6-1.6
Intermittent access day 15 total locomotion0.30.50.50.70.7-0.7
Intermittent access total locomotion2.32.72.81.71.6-1.6
Intermittent access standard deviation1.53.03.21.81.7-1.7
Left kidney weight1.04.74.72.22.2-2.2
Right kidney weight1.67.27.22.72.7-2.7
Cocaine induced anxiety0.00.10.10.30.3-0.3
Post-drug Anxiety0.40.50.5-0.7-0.70.7
Baseline Anxiety2.12.52.6-1.6-1.61.6
Tail length0.41.41.41.21.2-1.2
Length with tail1.15.05.02.22.2-2.2
Length without tail1.23.83.82.01.9-1.9
Times rat made contact with spout0.30.40.40.60.6-0.6
Lifetime Intake1.92.32.51.61.5-1.5
Liver weight, left2.74.44.52.12.1-2.1
Liver weight, right1.72.92.91.71.7-1.7
Locomotor activity0.00.00.0-0.2-0.10.1
Locomotor testing distance1.73.03.01.71.7-1.7
Locomotor testing rearing0.40.80.80.90.9-0.9
Locomotion in novel chamber0.60.70.70.80.8-0.8
Locomotion in novel chamber post-restriction0.71.11.1-1.0-1.01.0
Fecal boli incidents, locomotor time 13.44.95.0-2.2-2.22.2
Change in fecal boli incidents, locomotor task2.02.02.01.41.4-1.4
Time >=10cm from walls, locomotor time 10.70.80.8-0.9-0.90.9
Bouts of movement, locomotor time 10.10.10.1-0.3-0.30.3
Total resting periods, locomotor time 10.20.20.2-0.5-0.40.4
Rest time, locomotor task time 12.83.53.6-1.9-1.91.9
Distance moved, locomotor task time 11.42.02.11.51.4-1.4
Vertical activity count, locomotor time 10.20.40.40.70.6-0.6
Time >=10cm from walls, locomotor time 22.03.03.01.71.7-1.7
Bouts of movement, locomotor time 21.11.71.71.31.3-1.3
Total resting periods, locomotor time 21.01.81.81.31.3-1.3
Rest time, locomotor task time 22.73.43.4-1.8-1.81.8
Distance moved, locomotor task time 22.42.82.81.71.7-1.7
Vertical activity count, locomotor time 22.73.73.81.91.9-1.9
Light reinforcement 10.00.10.10.30.3-0.3
Light reinforcement 20.50.80.8-0.9-0.90.9
Bone: marrow area0.00.10.1-0.3-0.30.3
Bone: maximum diameter0.20.40.40.60.6-0.6
Bone: maximum force0.61.01.01.01.0-1.0
Bone: maximum moment0.30.60.60.80.7-0.7
Mean time between licks in bursts0.10.30.3-0.6-0.60.6
Mean num. licks in bursts0.00.10.1-0.3-0.30.3
Cd content in liver1.51.71.71.31.3-1.3
Co content in liver0.91.01.0-1.0-1.01.0
Cu content in liver1.41.61.6-1.3-1.31.3
Fe content in liver0.00.00.0-0.1-0.00.0
K content in liver0.80.80.8-0.9-0.90.9
Mg content in liver0.20.20.2-0.4-0.40.4
Mn content in liver0.80.90.9-1.0-1.01.0
Na content in liver1.51.61.61.21.3-1.3
Rb content in liver1.61.81.8-1.3-1.41.4
Se content in liver4.24.94.9-2.2-2.22.2
Sr content in liver0.00.00.0-0.0-0.00.0
Zn content in liver0.00.00.0-0.1-0.10.1
Bone: minimum diameter1.42.52.61.61.6-1.6
Time in familiar zone, hab. session 11.21.21.2-1.1-1.11.1
Time in novel zone, hab. session 12.12.12.11.51.5-1.5
Total zone transitions, hab. session 12.23.13.11.81.8-1.8
Total locomotion distance, hab. session 10.50.80.80.90.9-0.9
Locomotion velocity, hab. session 10.40.50.50.70.7-0.7
Time in familiar zone, hab. session 20.20.20.2-0.4-0.40.4
Time in novel zone, hab. session 20.10.10.10.40.4-0.4
Total zone transitions, hab. session 20.50.70.70.80.8-0.8
Total locomotion distance, hab. session 20.40.50.5-0.7-0.70.7
Locomotion velocity, hab. session 20.20.30.3-0.6-0.60.6
Novel to familiar place preference ratio3.23.53.51.91.9-1.9
Novelty place preference3.53.83.81.91.9-1.9
Time in novel zone, NPP test3.03.23.21.81.8-1.8
Total zone transitions, NPP test1.62.32.3-1.5-1.51.5
Total locomotion distance, NPP test2.12.82.8-1.7-1.71.7
Locomotion velocity, NPP test1.72.42.4-1.6-1.61.6
Intraocular pressure0.20.30.3-0.6-0.60.6
Delta distance traveled before/after self-admin0.00.00.00.10.1-0.1
Delta ambulatory time before/after self-admin0.20.20.20.50.5-0.5
Parametrial fat weight0.00.00.0-0.2-0.20.2
Pavlov. Cond. lever latency0.50.60.6-0.8-0.80.8
Pavlov. Cond. magazine entry latency1.01.31.31.21.2-1.2
Pavlov. Cond. change in total contacts0.00.00.0-0.0-0.00.0
Pavlov. Cond. index score0.30.30.30.60.6-0.6
Pavlov. Cond. latency score0.40.40.50.70.7-0.7
Pavlov. Cond. lever contacts0.50.60.60.80.8-0.8
Pavlov. Cond. magazine entry number1.41.81.8-1.3-1.31.3
Pavlov. Cond. intertrial magazine entries0.00.10.10.20.2-0.2
Pavlov. Cond. lever-magazine prob. diff.0.20.20.20.50.5-0.5
Pavlov. Cond. response bias0.91.11.11.01.0-1.0
Pavlov. Cond. lever latency1.92.62.6-1.6-1.61.6
Pavlov. Cond. magazine entry latency1.21.51.51.21.2-1.2
Pavlov. Cond. change in total contacts0.40.70.70.80.8-0.8
Pavlov. Cond. index score2.33.03.11.71.7-1.7
Pavlov. Cond. latency score2.12.72.71.61.7-1.7
Pavlov. Cond. lever contacts2.94.04.02.02.0-2.0
Pavlov. Cond. magazine entry number1.41.71.7-1.3-1.31.3
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.1-0.10.1
Pavlov. Cond. lever-magazine prob. diff.2.02.62.61.61.6-1.6
Pavlov. Cond. response bias3.04.14.12.02.0-2.0
Time in closed arm before self-admin5.87.57.52.72.7-2.7
Time in closed arm after self-admin4.04.34.32.12.1-2.1
Time in open arm before self-admin4.34.74.9-2.2-2.22.2
Time in open arm after self-admin6.57.17.1-2.7-2.72.7
Bone: periosteal estimation0.00.00.00.20.2-0.2
Bone: periosteal perimeter0.61.01.01.01.0-1.0
Bone: post-yield work0.00.00.00.20.2-0.2
Progressive ratio test 1 active lever presses1.31.71.81.31.3-1.3
Progressive ratio test 1 breakpoint1.31.51.61.31.2-1.2
Progressive ratio test 1 inactive lever presses1.62.22.41.51.5-1.5
Progressive ratio test 2 active lever presses4.45.25.42.32.3-2.3
Progressive ratio test 2 breakpoint4.45.05.22.32.2-2.2
Progressive ratio test 2 inactive lever presses4.36.97.12.72.6-2.6
Incentive Sensitization - Responses2.43.33.31.81.8-1.8
Incentive Sensitization - Breakpoint2.53.33.31.81.8-1.8
Sum of active levers in priming session hrs 5-63.02.82.8-1.7-1.71.7
Progressive ratio0.91.41.41.11.2-1.2
Food seeking constrained by brief footshock0.20.20.20.40.4-0.4
Seeking ratio, punishment vs. effort0.40.60.6-0.7-0.80.8
Retroperitoneal fat weight19.181.581.69.09.0-9.0
Reaction time number correct0.30.60.6-0.8-0.80.8
Reaction time mean minus median0.00.10.1-0.3-0.30.3
Reaction time mean minus median AUC0.00.00.0-0.2-0.20.2
Reaction time num false alarms2.13.03.0-1.7-1.71.7
Reaction time num false alarms AUC2.84.44.5-2.1-2.12.1
Reaction time trials correct on left0.30.60.6-0.8-0.80.8
Reaction time trials on left0.40.70.7-0.8-0.80.8
Reaction time mean0.20.30.30.60.6-0.6
Reaction time mean AUC0.30.50.50.70.7-0.7
Median of all reaction times0.50.70.70.80.8-0.8
Reaction time omissions0.20.40.4-0.6-0.60.6
Reaction time false alarm rate2.13.03.0-1.7-1.71.7
Reaction time premature initiation rate0.00.00.0-0.2-0.20.2
Reaction time premature initiations0.20.40.5-0.7-0.70.7
Std. dev. reaction times0.00.00.00.00.0-0.0
Reaction time trials completed0.40.70.7-0.8-0.80.8
Reaction time trials AUC0.20.40.4-0.6-0.70.7
Run reversals in cocaine runway, females2.02.02.01.41.4-1.4
Run reversals in cocaine runway, males0.00.00.0-0.2-0.20.2
Latency to leave start box in cocaine runway0.50.60.6-0.8-0.70.7
Latency to leave start box in cocaine runway, F0.50.60.6-0.8-0.70.7
Latency to leave start box in cocaine runway, M0.00.00.00.10.1-0.1
Std. dev. time between licks in bursts0.60.80.80.90.9-0.9
Total sessions with >9 infusions0.81.01.01.01.0-1.0
Short access day 1 total inactive lever presses1.21.61.61.31.2-1.2
Short access day 10 total inactive lever presses0.10.30.30.60.6-0.6
Short access day 1 total infusions2.22.93.01.71.7-1.7
Short access day 10 total infusions1.01.31.41.21.1-1.1
Short access total infusions0.81.01.11.11.0-1.0
Short access day 1 locomotion1.01.21.31.11.1-1.1
Short access day 10 total locomotion1.42.62.71.61.6-1.6
Short access total locomotion1.21.41.51.21.2-1.2
One hour access (0.3 mA shock)3.64.14.32.12.0-2.0
Compulsive drug intake3.84.54.5-2.1-2.12.1
One hour access (shock baseline)4.77.27.42.72.7-2.7
Social response proportion4.04.54.5-2.1-2.12.1
Social responses0.50.60.7-0.8-0.80.8
Social time6.38.58.5-2.9-2.92.9
Soleus weight0.20.50.5-0.7-0.70.7
Bone: stiffness1.01.61.61.31.3-1.3
Tibialis anterior weight1.65.35.3-2.3-2.32.3
Time to tail flick, vehicle, before self-admin0.40.50.50.70.7-0.7
Time to tail flick, vehicle, after self-admin3.64.74.72.22.2-2.2
Time to tail flick, test, before self-admin2.02.12.11.41.5-1.5
Time to tail flick, test, after self-admin3.53.73.71.91.9-1.9
Delta time to tail flick, vehicle, before/after SA1.41.31.31.21.2-1.2
Delta time to tail flick, test, before/after SA0.10.10.1-0.4-0.40.4
Tibia length0.20.50.5-0.7-0.70.7
Ambulatory time before self-admin0.00.00.00.10.2-0.2
Ambulatory time after self-admin0.70.90.90.90.9-0.9
Bone: tissue strength0.40.40.4-0.6-0.60.6
Total heroin consumption0.20.20.3-0.5-0.50.5
Bone: trabecular number0.71.11.11.01.1-1.1
Bone: trabecular spacing0.00.00.0-0.0-0.00.0
Bone: trabecular thickness0.50.70.70.80.8-0.8
Bone: trabecular tissue density0.30.40.4-0.6-0.60.6
Water consumed over 24 hours1.11.41.41.21.2-1.2
Number of responses in last shaping day4.75.15.32.32.2-2.2