Ube2g1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr10_57226312_57282204 0.03 0.02 1.4e-03 0.02 0.01 0.01 0.01 4.9e-03 3.3e-02 1.3e-02 1.7e-02
2 IL intron excision ratio chr10_57282306_57292178 0.19 0.14 8.1e-03 0.01 0.05 0.01 0.03 1.6e-01 2.8e-02 1.9e-01 5.5e-02
3 Adipose mRNA stability Ube2g1 0.04 0.03 3.7e-03 0 0.01 0.01 0.01 1.2e-01 9.7e-03 7.0e-03 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.73.2-0.7-1.21.8
Area under the delay curve0.10.10.30.00.3-0.6
BMI with tail0.20.81.1-1.0-1.00.6
BMI without tail0.71.41.6-1.3-1.31.0
Body weight1.35.68.8-1.6-2.33.0
Weight adjusted by age2.12.44.1-2.0-1.70.5
Bone surface1.11.92.5-1.4-1.61.1
Bone volume1.42.43.2-1.6-1.81.2
Breakpoint value in progressive ratio session1.51.62.1-1.1-1.21.4
Number of licking bursts0.30.30.40.60.6-0.3
Context. condit. distance diff. score1.41.72.1-1.3-1.51.2
Locomotion velocity, session 13.63.94.3-1.8-2.12.1
Locomotion distance, session 10.81.01.7-1.3-1.10.5
Locomotion velocity, session 20.20.30.70.3-0.10.8
Locomotion distance, session 20.50.60.9-0.6-0.81.0
Locomotion velocity, session 32.22.63.41.81.8-1.2
Locomotion distance, session 30.10.10.20.50.4-0.1
Stereotopy head waving bouts, day 30.00.00.00.1-0.00.2
Stereotopy head waving duration, day 30.60.71.70.00.5-1.3
Locomotion velocity, session 70.00.00.0-0.2-0.1-0.1
Locomotion distance, session 70.00.00.00.10.00.1
Stereotopy head waving bouts, day 71.11.21.6-1.3-1.20.7
Stereotopy head waving duration, day 71.41.72.1-1.4-1.40.9
Locomotion velocity, session 80.91.11.6-1.3-1.20.6
Locomotion distance, session 82.43.54.0-1.7-2.01.9
Degree of sensitization distance0.70.70.9-1.0-0.90.5
Degree of sensitization stereotypy1.92.02.3-1.3-1.51.4
Conditioned locomotion1.21.41.61.11.3-1.1
Cocaine response after cond. corrected0.30.30.50.60.10.7
Cocaine response after cond. not corrected0.20.20.70.2-0.20.8
Cocaine response before conditioning0.70.81.3-1.1-1.00.4
Saline control response0.40.60.8-0.9-0.80.4
Bone: connectivity density1.52.33.2-1.1-1.61.8
Bone: cortical apparent density1.21.62.01.41.4-0.9
Bone: cortical area0.40.61.00.50.7-1.0
Bone: cortical porosity0.70.81.31.10.50.9
Bone: cortical porosity0.70.81.51.20.60.6
Bone: cortical thickness2.13.55.02.22.1-1.1
Bone: cortical thickness2.12.54.92.21.60.1
Bone: cortical tissue density1.01.31.61.31.3-0.8
Condit. Reinf. active minus inactive responses0.40.50.80.90.50.5
Condit. Reinf. active-inactive response ratio0.30.30.60.70.40.4
Condit. Reinf. active responses0.30.30.60.70.30.6
Condit. Reinf. inactive responses0.00.00.00.20.2-0.1
Incentive salience index mean0.50.70.91.00.41.0
Condit. Reinf. lever presses0.91.23.20.7-0.11.8
Condit. Reinf. active minus inactive responses0.30.30.50.70.20.6
Condit. Reinf. active-inactive response ratio0.40.40.80.90.50.4
Condit. Reinf. active responses0.10.20.30.50.10.5
Condit. Reinf. inactive responses0.00.00.1-0.2-0.1-0.3
Condit. Reinf. lever presses0.60.80.90.80.9-0.9
Condit. Reinf. lever reinforcers received0.10.10.20.50.20.3
Conditioned reinforcement - actives0.70.71.0-1.0-1.00.3
Conditioned reinforcement - inactives0.91.11.7-1.3-1.20.2
Conditioned locomotion0.30.40.9-0.40.0-1.0
Patch foraging indifference point 0 sec0.71.12.11.41.00.5
Patch foraging indifference point AUC0.80.91.4-1.1-0.3-1.2
Delay disc. indifference point, 0s delay1.41.62.8-1.7-1.30.3
Delay disc. indifference point, 16s delay0.30.30.5-0.5-0.1-0.7
Delay disc. indifference point, 2s delay0.20.30.30.50.6-0.5
Delay disc. indifference point, 24s delay0.60.61.01.00.8-0.2
Delay disc. indifference point, 4s delay0.30.30.5-0.7-0.5-0.1
Delay disc. indifference point, 8s delay0.00.00.0-0.00.1-0.2
Indifference point function ln k2.63.77.62.81.60.9
Indifference point function log k2.63.77.62.81.60.9
Patch foraging total patch changes 0 sec0.50.81.41.20.80.5
Patch foraging total patch changes 12 sec0.50.61.4-1.2-0.7-0.2
Patch foraging total patch changes 18 sec0.30.30.7-0.9-0.5-0.0
Patch foraging total patch changes 24 sec0.20.30.6-0.50.1-0.8
Patch foraging total patch changes 6 sec0.50.81.4-1.2-0.4-0.9
Patch foraging time to switch 0 sec1.11.83.0-1.7-1.40.4
Patch foraging water rate 0 sec0.81.31.91.41.2-0.7
Patch foraging water rate 12 sec0.40.60.8-0.5-0.90.8
Patch foraging water rate 18 sec0.50.61.60.4-0.31.3
Patch foraging water rate 24 sec0.00.00.00.2-0.1-0.2
Patch foraging water rate 6 sec0.40.51.01.00.6-0.5
Seeking ratio, delayed vs. immediate footshock0.70.81.00.81.0-0.8
Distance traveled before self-admin0.50.51.3-0.30.3-1.2
Distance traveled after self-admin3.43.87.4-2.7-2.0-0.3
Extensor digitorum longus weight2.710.717.4-4.2-3.61.2
Bone: elastic displacement0.60.70.80.70.8-0.9
Bone: elastic work1.62.02.51.51.6-1.2
Bone: endosteal estimation1.43.06.1-2.5-1.6-0.5
Bone: endosteal perimeter1.63.36.6-2.6-1.7-0.4
Epididymis fat weight4.29.912.4-3.5-3.42.4
Delta time in closed arm before/after self-admin0.60.51.2-1.1-0.7-0.0
Delta time in open arm before/after self-admin0.60.60.9-0.9-0.90.4
Diff in mean of infusions in LGA sessions0.70.71.9-0.1-0.51.4
Delay discount exponential model param0.10.10.2-0.2-0.30.4
Extinction: sum of active levers before priming2.52.52.9-1.4-1.61.7
Active lever presses in extinction session 61.71.72.2-1.5-1.31.0
Bone: final force0.30.51.0-1.0-0.80.2
Bone: final moment0.30.50.9-0.9-0.7-0.0
Food consumed during 24 hour testing period0.20.30.50.70.30.6
Glucose1.82.75.00.81.6-2.2
Heart weight1.01.42.3-1.5-1.20.6
Delay discount hyperbolic model param0.10.10.2-0.1-0.30.4
Intermittent access intake day 1-15 change0.80.82.3-0.40.2-1.5
Intermittent access intake escalation1.11.13.0-0.20.4-1.7
Intermittent access intake escalation 21.91.94.20.61.1-2.1
Intermitt. access day 1 inactive lever presses1.01.01.60.80.9-1.3
Intermitt. access day 15 inactive lever presses0.10.10.30.50.20.3
Intermitt. access escalation Index2.32.13.4-1.0-1.41.9
Intermittent access day 1 total infusions1.61.92.9-1.7-1.50.6
Intermittent access day 15 total infusions1.82.13.9-2.0-1.2-0.9
Intermittent access terminal intake (last 3 days)2.32.54.5-2.1-1.70.2
Intermittent access total infusions1.11.32.3-1.5-1.2-0.2
Intermittent access day 1 locomotion1.01.01.6-1.3-1.2-0.0
Intermittent access day 15 total locomotion0.50.60.9-0.8-0.4-0.9
Intermittent access total locomotion0.20.30.4-0.6-0.6-0.3
Intermittent access standard deviation1.61.73.7-1.2-0.3-1.9
Left kidney weight0.10.20.4-0.6-0.1-0.5
Right kidney weight0.10.10.2-0.5-0.0-0.4
Cocaine induced anxiety2.02.44.22.01.6-0.7
Post-drug Anxiety0.40.51.01.00.60.2
Baseline Anxiety1.01.01.9-1.4-1.00.5
Tail length2.88.412.7-2.1-2.83.6
Length with tail1.45.29.6-1.3-2.13.1
Length without tail1.12.43.8-1.0-1.52.0
Times rat made contact with spout0.60.71.41.20.80.2
Lifetime Intake1.82.03.7-1.9-1.5-0.2
Liver weight, left0.40.61.4-0.2-0.61.2
Liver weight, right1.21.92.3-1.4-1.51.3
Locomotor activity0.50.71.2-1.1-1.00.3
Locomotor testing distance1.62.75.0-2.2-1.8-0.0
Locomotor testing rearing1.92.95.8-2.4-1.6-0.4
Locomotion in novel chamber1.82.25.80.20.9-2.4
Locomotion in novel chamber post-restriction0.40.40.60.80.7-0.5
Fecal boli incidents, locomotor time 10.20.30.50.70.5-0.1
Change in fecal boli incidents, locomotor task0.40.30.60.80.7-0.1
Time >=10cm from walls, locomotor time 10.20.20.30.50.40.1
Bouts of movement, locomotor time 10.30.30.50.70.40.6
Total resting periods, locomotor time 10.91.01.91.40.90.5
Rest time, locomotor task time 10.70.71.01.01.0-0.6
Distance moved, locomotor task time 10.80.91.7-1.3-1.00.1
Vertical activity count, locomotor time 10.91.01.6-1.2-1.10.4
Time >=10cm from walls, locomotor time 20.50.50.90.90.8-0.0
Bouts of movement, locomotor time 20.60.71.31.10.90.1
Total resting periods, locomotor time 20.40.40.80.90.60.3
Rest time, locomotor task time 20.91.01.71.31.1-0.4
Distance moved, locomotor task time 21.01.22.5-1.6-1.0-0.3
Vertical activity count, locomotor time 20.40.50.9-0.9-0.70.1
Light reinforcement 10.81.42.6-1.6-1.30.1
Light reinforcement 20.10.10.2-0.2-0.0-0.5
Bone: marrow area1.42.96.0-2.5-1.6-0.5
Bone: maximum diameter0.30.50.7-0.8-0.2-0.9
Bone: maximum force0.30.51.0-1.0-0.7-0.0
Bone: maximum moment0.30.51.0-1.0-0.7-0.3
Mean time between licks in bursts1.82.53.1-1.7-1.81.2
Mean num. licks in bursts0.10.10.20.0-0.10.5
Cd content in liver1.11.21.7-1.3-1.20.6
Co content in liver0.20.20.3-0.5-0.50.4
Cu content in liver1.41.73.31.81.40.1
Fe content in liver0.40.51.2-0.2-0.51.1
K content in liver0.40.40.8-0.3-0.60.9
Mg content in liver0.00.00.10.00.1-0.3
Mn content in liver0.60.71.41.20.70.4
Na content in liver0.20.20.5-0.00.3-0.7
Rb content in liver0.50.61.1-1.1-0.8-0.0
Se content in liver1.01.31.61.31.3-0.8
Sr content in liver1.51.41.8-1.4-1.30.7
Zn content in liver0.20.20.30.50.5-0.3
Bone: minimum diameter1.01.83.6-1.9-1.4-0.1
Time in familiar zone, hab. session 10.10.10.3-0.10.1-0.6
Time in novel zone, hab. session 10.10.10.20.40.10.5
Total zone transitions, hab. session 12.63.77.1-2.7-2.00.0
Total locomotion distance, hab. session 10.30.40.6-0.8-0.70.3
Locomotion velocity, hab. session 10.20.40.7-0.8-0.60.1
Time in familiar zone, hab. session 20.10.10.30.2-0.10.5
Time in novel zone, hab. session 20.60.60.60.70.8-0.8
Total zone transitions, hab. session 22.02.64.3-2.1-1.80.7
Total locomotion distance, hab. session 20.40.50.8-0.9-0.80.4
Locomotion velocity, hab. session 20.40.50.9-0.9-0.80.3
Novel to familiar place preference ratio0.10.10.30.00.2-0.5
Novelty place preference0.00.00.00.10.1-0.2
Time in novel zone, NPP test0.00.00.00.0-0.00.0
Total zone transitions, NPP test2.02.95.3-2.3-1.80.4
Total locomotion distance, NPP test0.10.20.3-0.5-0.1-0.5
Locomotion velocity, NPP test0.30.41.0-0.10.4-1.0
Intraocular pressure0.60.81.5-1.0-0.2-1.2
Delta distance traveled before/after self-admin3.43.75.0-2.2-2.21.0
Delta ambulatory time before/after self-admin2.12.33.2-1.7-1.80.9
Parametrial fat weight13.025.330.9-5.5-5.63.9
Pavlov. Cond. lever latency0.91.12.2-1.5-1.0-0.5
Pavlov. Cond. magazine entry latency1.21.62.81.70.91.0
Pavlov. Cond. change in total contacts1.61.72.91.71.5-0.4
Pavlov. Cond. index score0.81.01.61.30.61.0
Pavlov. Cond. latency score0.91.21.71.30.61.2
Pavlov. Cond. lever contacts0.60.71.21.10.70.6
Pavlov. Cond. magazine entry number0.70.91.7-1.3-0.9-0.5
Pavlov. Cond. intertrial magazine entries1.41.73.4-1.8-1.2-0.3
Pavlov. Cond. lever-magazine prob. diff.0.81.01.61.30.70.9
Pavlov. Cond. response bias0.81.01.71.30.80.7
Pavlov. Cond. lever latency2.23.03.6-1.8-1.91.5
Pavlov. Cond. magazine entry latency0.91.11.71.31.1-0.5
Pavlov. Cond. change in total contacts0.81.11.51.21.2-0.7
Pavlov. Cond. index score1.82.32.61.41.6-1.5
Pavlov. Cond. latency score2.22.83.11.51.7-1.8
Pavlov. Cond. lever contacts0.81.11.31.01.1-1.0
Pavlov. Cond. magazine entry number0.91.11.3-1.1-1.10.8
Pavlov. Cond. intertrial magazine entries1.01.31.6-1.2-1.30.8
Pavlov. Cond. lever-magazine prob. diff.1.82.32.61.41.6-1.5
Pavlov. Cond. response bias1.11.51.81.31.3-1.0
Time in closed arm before self-admin0.60.71.90.4-0.31.4
Time in closed arm after self-admin0.00.00.10.30.10.2
Time in open arm before self-admin1.82.02.71.01.5-1.6
Time in open arm after self-admin0.70.71.9-0.40.3-1.4
Bone: periosteal estimation0.51.12.1-1.4-0.8-0.7
Bone: periosteal perimeter0.30.61.1-1.0-0.5-0.6
Bone: post-yield work0.81.11.2-0.9-1.11.1
Progressive ratio test 1 active lever presses1.51.52.0-1.4-1.40.8
Progressive ratio test 1 breakpoint2.52.63.1-1.7-1.81.3
Progressive ratio test 1 inactive lever presses0.40.50.6-0.8-0.8-0.5
Progressive ratio test 2 active lever presses0.60.70.9-1.0-1.00.4
Progressive ratio test 2 breakpoint0.30.30.5-0.6-0.70.3
Progressive ratio test 2 inactive lever presses1.01.11.9-1.4-1.2-0.1
Incentive Sensitization - Responses0.10.10.1-0.2-0.40.2
Incentive Sensitization - Breakpoint0.10.10.1-0.2-0.40.2
Sum of active levers in priming session hrs 5-61.91.93.9-0.6-1.12.0
Progressive ratio0.30.40.8-0.9-0.4-0.4
Food seeking constrained by brief footshock0.10.10.20.30.4-0.3
Seeking ratio, punishment vs. effort0.60.71.61.20.80.1
Retroperitoneal fat weight0.10.20.4-0.6-0.2-0.6
Reaction time number correct0.10.10.30.1-0.40.5
Reaction time mean minus median0.70.91.20.81.1-1.0
Reaction time mean minus median AUC0.10.20.30.20.5-0.5
Reaction time num false alarms1.11.42.01.41.4-0.7
Reaction time num false alarms AUC1.01.31.71.31.3-0.8
Reaction time trials correct on left0.10.10.30.1-0.40.5
Reaction time trials on left0.10.10.20.1-0.40.5
Reaction time mean0.20.30.40.40.7-0.5
Reaction time mean AUC0.60.81.10.71.1-0.9
Median of all reaction times0.10.10.20.10.4-0.4
Reaction time omissions0.20.30.5-0.7-0.4-0.2
Reaction time false alarm rate0.81.11.51.11.2-0.8
Reaction time premature initiation rate0.81.02.01.40.70.8
Reaction time premature initiations0.60.91.61.30.41.0
Std. dev. reaction times1.21.72.31.31.5-1.0
Reaction time trials completed0.10.10.20.1-0.40.5
Reaction time trials AUC0.10.10.20.1-0.30.5
Run reversals in cocaine runway, females0.20.20.20.40.4-0.4
Run reversals in cocaine runway, males0.90.81.4-1.0-0.3-1.2
Latency to leave start box in cocaine runway0.00.00.0-0.00.10.2
Latency to leave start box in cocaine runway, F0.30.30.7-0.3-0.20.8
Latency to leave start box in cocaine runway, M0.10.10.2-0.4-0.4-0.0
Std. dev. time between licks in bursts0.50.60.8-0.9-0.90.5
Total sessions with >9 infusions1.71.93.2-1.8-1.50.3
Short access day 1 total inactive lever presses0.00.00.1-0.1-0.30.1
Short access day 10 total inactive lever presses0.10.20.40.60.3-0.0
Short access day 1 total infusions1.31.42.4-1.6-0.8-1.0
Short access day 10 total infusions0.91.01.8-1.3-1.10.2
Short access total infusions1.71.93.7-1.9-1.4-0.4
Short access day 1 locomotion0.50.51.0-0.7-0.2-1.0
Short access day 10 total locomotion0.20.30.6-0.3-0.2-0.8
Short access total locomotion0.20.20.5-0.4-0.3-0.7
One hour access (0.3 mA shock)0.91.01.8-1.3-1.10.0
Compulsive drug intake0.60.71.21.10.40.8
One hour access (shock baseline)1.31.52.9-1.7-1.2-0.3
Social response proportion1.92.15.50.5-0.72.3
Social responses2.63.43.9-1.7-2.01.8
Social time1.82.42.8-1.3-1.71.6
Soleus weight3.710.812.6-2.9-3.53.4
Bone: stiffness2.53.94.8-2.0-2.21.7
Tibialis anterior weight3.712.816.2-4.0-4.02.5
Time to tail flick, vehicle, before self-admin1.21.32.8-0.5-0.91.7
Time to tail flick, vehicle, after self-admin0.00.10.1-0.3-0.3-0.0
Time to tail flick, test, before self-admin1.81.83.82.01.10.6
Time to tail flick, test, after self-admin0.40.40.80.90.50.3
Delta time to tail flick, vehicle, before/after SA0.90.82.4-0.20.3-1.5
Delta time to tail flick, test, before/after SA0.80.71.5-1.2-0.6-0.5
Tibia length0.41.02.80.4-0.31.7
Ambulatory time before self-admin0.30.30.8-0.10.4-0.9
Ambulatory time after self-admin2.32.54.0-2.0-1.80.5
Bone: tissue strength0.20.20.5-0.00.3-0.7
Total heroin consumption2.63.06.2-0.8-1.52.5
Bone: trabecular number0.60.92.1-0.1-0.71.5
Bone: trabecular spacing0.30.41.0-0.00.4-1.0
Bone: trabecular thickness0.30.30.5-0.4-0.60.7
Bone: trabecular tissue density2.02.93.71.71.9-1.5
Water consumed over 24 hours1.72.14.12.01.20.8
Number of responses in last shaping day0.90.92.60.00.4-1.6