Ubash3a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Ubash3a 0.04 0.02 2.4e-05 0.05 0.05 0.03 0.05 1.4e-05 3.9e-05 6.2e-04 3.9e-05
2 PL gene expression Ubash3a 0.04 0.02 3.7e-03 0.01 0.02 0.01 0.01 3.9e-02 2.3e-03 9.1e-03 1.6e-02
3 IC gene expression Ubash3a 0.25 0.11 2.0e-03 0.01 0.02 0.02 0.01 9.4e-02 5.2e-02 3.9e-02 8.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.92.70.2-0.11.6
Area under the delay curve0.60.71.0-0.5-1.01.0
BMI with tail0.93.15.42.31.90.3
BMI without tail0.41.11.91.40.8-0.9
Body weight1.77.715.23.92.80.3
Weight adjusted by age1.82.83.92.01.9-0.8
Bone surface1.22.25.00.90.92.2
Bone volume0.71.32.40.90.81.6
Breakpoint value in progressive ratio session0.50.61.3-1.1-0.70.5
Number of licking bursts0.71.23.40.30.31.8
Context. condit. distance diff. score1.41.72.5-1.6-1.50.4
Locomotion velocity, session 12.12.33.5-1.8-1.9-0.4
Locomotion distance, session 11.82.34.2-2.0-1.6-0.0
Locomotion velocity, session 20.40.50.8-0.9-0.9-0.1
Locomotion distance, session 20.70.91.4-1.0-1.2-0.6
Locomotion velocity, session 30.40.50.6-0.6-0.7-0.7
Locomotion distance, session 30.90.92.1-0.8-1.50.0
Stereotopy head waving bouts, day 30.20.30.80.30.1-0.9
Stereotopy head waving duration, day 30.30.41.0-0.20.2-1.0
Locomotion velocity, session 70.30.40.7-0.8-0.60.2
Locomotion distance, session 70.50.71.4-1.2-0.7-0.4
Stereotopy head waving bouts, day 70.40.50.90.7-0.3-1.0
Stereotopy head waving duration, day 70.40.51.10.6-0.4-1.0
Locomotion velocity, session 80.70.81.3-1.0-0.51.1
Locomotion distance, session 81.52.23.7-1.9-1.70.3
Degree of sensitization distance0.50.51.40.21.20.2
Degree of sensitization stereotypy0.40.40.90.1-0.9-0.5
Conditioned locomotion1.92.13.30.91.81.5
Cocaine response after cond. corrected0.70.91.31.01.20.4
Cocaine response after cond. not corrected0.70.91.21.01.10.6
Cocaine response before conditioning0.10.20.3-0.3-0.20.6
Saline control response0.40.60.90.90.7-0.6
Bone: connectivity density0.91.44.30.0-0.12.1
Bone: cortical apparent density0.40.50.60.70.80.6
Bone: cortical area0.30.41.11.00.3-0.4
Bone: cortical porosity0.40.40.9-0.5-0.1-0.9
Bone: cortical porosity0.30.30.90.00.1-0.9
Bone: cortical thickness0.10.10.30.50.20.1
Bone: cortical thickness0.81.01.30.90.91.1
Bone: cortical tissue density0.40.50.70.70.80.6
Condit. Reinf. active minus inactive responses0.70.70.9-0.8-0.8-0.9
Condit. Reinf. active-inactive response ratio0.00.00.00.00.2-0.1
Condit. Reinf. active responses0.70.91.5-0.7-1.2-0.9
Condit. Reinf. inactive responses0.81.02.1-0.9-1.5-0.3
Incentive salience index mean0.40.50.7-0.6-0.8-0.7
Condit. Reinf. lever presses0.10.10.30.1-0.40.6
Condit. Reinf. active minus inactive responses0.40.60.8-0.9-0.30.9
Condit. Reinf. active-inactive response ratio0.80.92.20.00.81.5
Condit. Reinf. active responses0.30.40.6-0.7-0.80.5
Condit. Reinf. inactive responses1.01.32.1-0.2-1.4-1.3
Condit. Reinf. lever presses1.62.23.1-1.8-0.71.7
Condit. Reinf. lever reinforcers received0.50.71.0-1.0-0.90.7
Conditioned reinforcement - actives0.50.81.5-0.9-1.20.0
Conditioned reinforcement - inactives1.11.72.7-1.6-1.30.7
Conditioned locomotion0.40.61.0-0.4-0.81.0
Patch foraging indifference point 0 sec0.40.81.90.60.3-1.4
Patch foraging indifference point AUC0.20.30.4-0.2-0.6-0.6
Delay disc. indifference point, 0s delay2.12.35.50.61.02.3
Delay disc. indifference point, 16s delay1.11.22.1-1.2-1.4-0.0
Delay disc. indifference point, 2s delay1.01.12.9-0.5-0.31.7
Delay disc. indifference point, 24s delay0.91.02.30.5-0.8-1.5
Delay disc. indifference point, 4s delay0.50.51.5-0.10.01.2
Delay disc. indifference point, 8s delay0.60.71.2-0.3-0.91.1
Indifference point function ln k0.00.00.1-0.30.00.1
Indifference point function log k0.00.00.1-0.30.00.1
Patch foraging total patch changes 0 sec0.40.81.60.80.3-1.3
Patch foraging total patch changes 12 sec0.20.30.30.60.4-0.6
Patch foraging total patch changes 18 sec0.40.60.90.90.4-0.8
Patch foraging total patch changes 24 sec0.10.20.40.1-0.2-0.6
Patch foraging total patch changes 6 sec0.30.40.60.80.4-0.7
Patch foraging time to switch 0 sec0.20.30.70.50.80.0
Patch foraging water rate 0 sec0.10.20.50.70.30.2
Patch foraging water rate 12 sec0.51.02.30.40.71.5
Patch foraging water rate 18 sec0.60.91.3-0.7-1.20.9
Patch foraging water rate 24 sec1.11.54.50.10.32.1
Patch foraging water rate 6 sec0.71.02.10.60.81.4
Seeking ratio, delayed vs. immediate footshock0.60.71.3-0.9-0.31.1
Distance traveled before self-admin1.01.32.70.91.60.7
Distance traveled after self-admin0.10.20.20.00.5-0.5
Extensor digitorum longus weight0.20.91.2-1.1-0.90.8
Bone: elastic displacement0.20.30.70.40.80.2
Bone: elastic work0.70.91.40.91.20.8
Bone: endosteal estimation0.71.63.11.81.30.1
Bone: endosteal perimeter0.40.92.40.6-0.3-1.6
Epididymis fat weight0.41.43.51.90.7-0.6
Delta time in closed arm before/after self-admin2.42.23.41.81.80.1
Delta time in open arm before/after self-admin0.20.20.3-0.5-0.0-0.6
Diff in mean of infusions in LGA sessions1.51.82.0-1.4-1.31.3
Delay discount exponential model param0.60.71.20.61.1-0.7
Extinction: sum of active levers before priming1.01.11.8-1.3-0.51.2
Active lever presses in extinction session 61.21.21.7-1.3-0.81.1
Bone: final force1.42.24.82.21.0-0.9
Bone: final moment1.21.94.62.11.0-0.4
Food consumed during 24 hour testing period0.40.61.30.40.51.1
Glucose0.40.71.41.20.50.6
Heart weight0.40.51.30.60.1-1.1
Delay discount hyperbolic model param0.70.81.20.71.1-0.9
Intermittent access intake day 1-15 change0.51.13.30.10.1-1.8
Intermittent access intake escalation0.50.92.80.00.0-1.7
Intermittent access intake escalation 21.61.84.8-0.3-0.7-2.2
Intermitt. access day 1 inactive lever presses0.31.02.7-0.50.11.6
Intermitt. access day 15 inactive lever presses0.10.30.6-0.5-0.80.2
Intermitt. access escalation Index0.71.02.9-0.0-0.11.7
Intermittent access day 1 total infusions1.01.73.5-1.1-0.61.9
Intermittent access day 15 total infusions0.10.20.3-0.5-0.10.4
Intermittent access terminal intake (last 3 days)0.10.10.2-0.4-0.4-0.0
Intermittent access total infusions0.50.61.1-0.8-0.41.0
Intermittent access day 1 locomotion1.72.15.60.40.82.4
Intermittent access day 15 total locomotion0.10.10.20.10.40.3
Intermittent access total locomotion1.21.43.9-0.00.62.0
Intermittent access standard deviation0.51.01.61.30.8-0.8
Left kidney weight1.46.614.53.82.3-0.3
Right kidney weight2.913.327.15.23.5-0.6
Cocaine induced anxiety0.71.01.7-0.9-1.3-0.5
Post-drug Anxiety1.71.82.8-1.7-1.6-0.4
Baseline Anxiety0.30.30.70.20.50.8
Tail length0.10.30.70.8-0.1-0.4
Length with tail0.62.56.02.41.30.0
Length without tail2.58.114.13.83.10.9
Times rat made contact with spout2.22.53.8-2.0-1.9-0.1
Lifetime Intake0.50.61.3-0.7-0.41.1
Liver weight, left0.50.92.01.40.60.5
Liver weight, right0.50.92.61.60.4-0.1
Locomotor activity0.81.32.50.91.60.6
Locomotor testing distance0.91.72.10.91.51.4
Locomotor testing rearing1.12.33.21.61.81.1
Locomotion in novel chamber0.50.61.4-0.5-0.41.2
Locomotion in novel chamber post-restriction0.61.01.81.40.5-1.0
Fecal boli incidents, locomotor time 10.60.81.71.30.4-0.8
Change in fecal boli incidents, locomotor task4.84.79.11.93.01.3
Time >=10cm from walls, locomotor time 11.61.72.31.51.50.8
Bouts of movement, locomotor time 11.41.52.3-0.5-1.4-1.5
Total resting periods, locomotor time 10.91.01.7-0.2-1.1-1.3
Rest time, locomotor task time 10.60.71.61.30.1-0.7
Distance moved, locomotor task time 10.30.41.2-1.1-0.0-0.0
Vertical activity count, locomotor time 10.10.20.4-0.70.10.4
Time >=10cm from walls, locomotor time 25.98.711.53.43.41.8
Bouts of movement, locomotor time 20.61.02.0-0.8-1.4-0.4
Total resting periods, locomotor time 20.61.12.2-0.9-1.5-0.4
Rest time, locomotor task time 20.10.20.40.3-0.7-0.2
Distance moved, locomotor task time 20.60.71.60.81.3-0.0
Vertical activity count, locomotor time 20.91.31.70.81.31.2
Light reinforcement 10.92.34.41.62.1-0.1
Light reinforcement 21.32.02.81.01.71.4
Bone: marrow area0.81.83.71.91.30.1
Bone: maximum diameter0.20.41.10.4-0.2-1.0
Bone: maximum force0.61.12.71.70.7-0.2
Bone: maximum moment0.61.02.41.60.70.2
Mean time between licks in bursts0.40.92.3-0.6-0.11.5
Mean num. licks in bursts1.21.82.3-1.3-1.2-1.5
Cd content in liver0.10.10.2-0.40.20.1
Co content in liver0.40.41.00.51.0-0.1
Cu content in liver0.00.10.1-0.30.10.2
Fe content in liver1.41.72.71.61.6-0.0
K content in liver1.11.12.0-1.0-1.40.4
Mg content in liver1.31.41.8-1.3-1.30.8
Mn content in liver0.30.30.7-0.4-0.8-0.3
Na content in liver0.10.10.3-0.60.10.0
Rb content in liver0.60.71.7-0.20.71.3
Se content in liver1.01.22.3-1.5-0.90.6
Sr content in liver0.70.61.2-1.1-0.60.6
Zn content in liver1.51.64.40.00.72.1
Bone: minimum diameter0.71.23.11.80.7-0.2
Time in familiar zone, hab. session 12.52.43.6-1.1-1.5-1.9
Time in novel zone, hab. session 12.92.94.41.52.11.4
Total zone transitions, hab. session 13.54.87.0-2.6-2.5-1.2
Total locomotion distance, hab. session 12.12.94.5-2.1-1.7-1.2
Locomotion velocity, hab. session 11.82.64.5-2.1-1.6-0.9
Time in familiar zone, hab. session 20.30.30.5-0.7-0.7-0.2
Time in novel zone, hab. session 20.20.20.40.40.60.3
Total zone transitions, hab. session 20.10.20.4-0.6-0.4-0.0
Total locomotion distance, hab. session 20.60.81.8-1.3-0.40.6
Locomotion velocity, hab. session 20.71.02.3-1.5-0.60.5
Novel to familiar place preference ratio0.70.71.21.10.90.2
Novelty place preference0.50.61.01.00.9-0.1
Time in novel zone, NPP test0.40.40.80.90.7-0.2
Total zone transitions, NPP test0.60.81.0-1.0-1.0-0.7
Total locomotion distance, NPP test0.10.10.2-0.4-0.00.1
Locomotion velocity, NPP test0.10.10.4-0.6-0.2-0.0
Intraocular pressure0.91.32.01.41.40.2
Delta distance traveled before/after self-admin0.30.30.3-0.6-0.6-0.4
Delta ambulatory time before/after self-admin0.20.20.4-0.5-0.6-0.3
Parametrial fat weight0.51.22.10.91.40.8
Pavlov. Cond. lever latency0.20.20.30.40.6-0.5
Pavlov. Cond. magazine entry latency0.30.40.6-0.7-0.80.4
Pavlov. Cond. change in total contacts0.10.10.10.1-0.3-0.3
Pavlov. Cond. index score0.10.10.2-0.2-0.40.5
Pavlov. Cond. latency score0.10.20.50.00.10.7
Pavlov. Cond. lever contacts0.10.20.3-0.2-0.30.6
Pavlov. Cond. magazine entry number0.60.71.40.91.2-0.1
Pavlov. Cond. intertrial magazine entries1.01.22.1-0.4-1.2-1.4
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.3-0.50.3
Pavlov. Cond. response bias0.91.12.0-1.1-1.40.2
Pavlov. Cond. lever latency1.21.63.61.10.2-1.9
Pavlov. Cond. magazine entry latency1.61.94.60.50.92.1
Pavlov. Cond. change in total contacts1.52.46.5-0.80.42.6
Pavlov. Cond. index score1.52.05.8-0.50.32.4
Pavlov. Cond. latency score1.41.95.3-0.30.52.3
Pavlov. Cond. lever contacts1.01.32.9-1.0-0.21.7
Pavlov. Cond. magazine entry number1.92.45.3-0.6-1.2-2.3
Pavlov. Cond. intertrial magazine entries1.62.53.6-1.5-1.9-1.2
Pavlov. Cond. lever-magazine prob. diff.1.41.85.1-0.40.42.3
Pavlov. Cond. response bias1.82.46.9-0.50.42.6
Time in closed arm before self-admin0.10.10.20.10.40.1
Time in closed arm after self-admin0.90.91.70.91.30.5
Time in open arm before self-admin0.00.00.1-0.1-0.10.2
Time in open arm after self-admin0.70.70.9-0.8-0.8-0.9
Bone: periosteal estimation0.61.32.81.71.0-0.1
Bone: periosteal perimeter0.81.43.50.4-0.7-1.9
Bone: post-yield work0.20.30.40.6-0.20.7
Progressive ratio test 1 active lever presses0.50.72.0-0.0-0.21.4
Progressive ratio test 1 breakpoint0.60.82.30.10.01.5
Progressive ratio test 1 inactive lever presses0.60.92.6-0.4-0.21.6
Progressive ratio test 2 active lever presses0.40.50.8-0.9-0.40.7
Progressive ratio test 2 breakpoint0.50.51.0-1.0-0.50.6
Progressive ratio test 2 inactive lever presses0.81.41.9-1.4-1.20.9
Incentive Sensitization - Responses0.50.71.8-1.3-0.6-0.1
Incentive Sensitization - Breakpoint0.50.61.5-1.2-0.5-0.3
Sum of active levers in priming session hrs 5-60.20.20.6-0.80.10.1
Progressive ratio0.20.40.60.80.7-0.0
Food seeking constrained by brief footshock0.81.02.3-0.3-0.7-1.5
Seeking ratio, punishment vs. effort0.20.30.5-0.3-0.4-0.7
Retroperitoneal fat weight0.31.42.11.51.30.4
Reaction time number correct0.10.20.2-0.5-0.50.1
Reaction time mean minus median0.20.61.3-0.6-1.1-0.1
Reaction time mean minus median AUC0.20.60.9-0.7-0.70.9
Reaction time num false alarms0.10.20.2-0.50.30.4
Reaction time num false alarms AUC0.10.20.5-0.70.00.2
Reaction time trials correct on left0.10.20.2-0.5-0.50.1
Reaction time trials on left0.10.20.3-0.5-0.60.2
Reaction time mean0.20.40.60.80.30.7
Reaction time mean AUC0.30.40.80.90.30.7
Median of all reaction times0.71.01.31.20.80.9
Reaction time omissions0.81.11.3-0.9-1.11.1
Reaction time false alarm rate0.10.10.2-0.30.40.3
Reaction time premature initiation rate0.10.10.20.00.4-0.4
Reaction time premature initiations0.00.10.1-0.10.1-0.4
Std. dev. reaction times0.10.20.5-0.2-0.70.3
Reaction time trials completed0.10.20.3-0.5-0.60.2
Reaction time trials AUC0.10.20.2-0.5-0.40.3
Run reversals in cocaine runway, females0.00.00.00.0-0.20.0
Run reversals in cocaine runway, males0.20.20.3-0.5-0.00.5
Latency to leave start box in cocaine runway0.20.20.3-0.4-0.5-0.4
Latency to leave start box in cocaine runway, F0.40.50.8-0.5-0.9-0.6
Latency to leave start box in cocaine runway, M0.20.20.30.40.5-0.0
Std. dev. time between licks in bursts2.73.64.51.92.11.7
Total sessions with >9 infusions0.91.11.4-1.1-1.20.9
Short access day 1 total inactive lever presses1.72.34.1-1.6-2.0-0.4
Short access day 10 total inactive lever presses0.41.01.4-1.2-1.10.4
Short access day 1 total infusions0.50.70.8-0.9-0.90.6
Short access day 10 total infusions0.81.01.5-1.2-1.20.4
Short access total infusions0.60.80.9-0.8-0.91.0
Short access day 1 locomotion0.20.20.2-0.5-0.40.5
Short access day 10 total locomotion1.01.82.71.11.11.7
Short access total locomotion0.81.02.70.30.41.6
One hour access (0.3 mA shock)3.43.97.1-2.7-2.10.1
Compulsive drug intake0.60.71.6-1.3-0.20.8
One hour access (shock baseline)1.01.52.2-1.5-1.50.0
Social response proportion0.70.81.01.00.80.9
Social responses0.10.10.10.3-0.10.4
Social time0.40.50.8-0.7-0.90.5
Soleus weight0.31.01.91.41.00.3
Bone: stiffness0.50.81.31.20.1-1.0
Tibialis anterior weight0.41.32.3-1.5-1.10.4
Time to tail flick, vehicle, before self-admin0.70.71.9-0.3-1.4-0.4
Time to tail flick, vehicle, after self-admin0.10.20.5-0.1-0.2-0.7
Time to tail flick, test, before self-admin0.70.71.9-0.40.21.4
Time to tail flick, test, after self-admin0.50.51.2-0.4-1.1-0.5
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.20.3-0.4
Delta time to tail flick, test, before/after SA0.60.61.20.9-0.2-1.1
Tibia length0.82.24.42.11.4-0.5
Ambulatory time before self-admin0.30.41.10.11.10.3
Ambulatory time after self-admin0.10.20.2-0.40.2-0.5
Bone: tissue strength0.10.10.40.2-0.1-0.6
Total heroin consumption1.01.22.6-1.6-0.70.7
Bone: trabecular number0.50.82.50.0-0.11.6
Bone: trabecular spacing0.91.22.60.80.6-1.6
Bone: trabecular thickness0.81.01.71.00.51.3
Bone: trabecular tissue density0.50.71.00.70.81.0
Water consumed over 24 hours1.62.25.5-0.7-0.62.4
Number of responses in last shaping day0.20.20.40.60.6-0.2