Tmem259

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye mRNA stability Tmem259 0.28 0.19 6.0e-03 0.09 0.04 0.01 0.05 1.8e-02 9.4e-02 2.2e-01 6.2e-02
2 PL isoform ratio NM_001100886.1 0.02 0.02 4.6e-03 0.01 0.02 0 0.01 8.4e-03 5.2e-03 2.4e-01 1.2e-02
3 PL isoform ratio XM_039078644.1 0.03 0.02 5.7e-04 0.01 0.02 0.02 0.02 9.8e-03 1.4e-03 2.6e-03 4.3e-03
4 Eye alternative TSS NM_001100886.1 0.74 0.16 2.4e-03 0.02 0.02 0.07 0.06 1.5e-01 1.5e-01 3.6e-02 5.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.91.55.30.90.00.12.3
Area under the delay curve2.12.22.9-1.7-1.71.70.7
BMI with tail5.618.224.1-4.7-4.94.91.5
BMI without tail2.34.87.2-2.7-2.52.4-0.5
Body weight1.04.35.7-2.3-2.42.40.7
Weight adjusted by age0.91.01.7-1.3-0.90.8-1.0
Bone surface1.83.28.51.80.8-0.62.9
Bone volume1.73.08.31.70.6-0.52.9
Breakpoint value in progressive ratio session4.65.16.52.12.5-2.5-1.7
Number of licking bursts0.50.51.2-0.9-0.40.3-1.1
Context. condit. distance diff. score0.10.10.2-0.3-0.40.4-0.1
Locomotion velocity, session 10.80.91.51.20.8-0.80.9
Locomotion distance, session 12.02.65.21.90.9-0.72.3
Locomotion velocity, session 25.66.611.53.42.6-2.51.2
Locomotion distance, session 22.94.16.52.51.7-1.72.0
Locomotion velocity, session 35.86.88.52.72.9-2.9-1.6
Locomotion distance, session 30.00.10.20.00.0-0.0-0.5
Stereotopy head waving bouts, day 35.36.28.83.02.8-2.8-0.3
Stereotopy head waving duration, day 35.76.89.02.93.0-3.0-0.8
Locomotion velocity, session 70.70.71.01.00.8-0.8-0.7
Locomotion distance, session 70.40.51.1-0.7-0.50.5-1.0
Stereotopy head waving bouts, day 70.50.61.20.90.4-0.31.1
Stereotopy head waving duration, day 70.70.91.51.20.7-0.61.1
Locomotion velocity, session 81.92.34.12.01.2-1.11.6
Locomotion distance, session 80.60.81.61.30.8-0.70.8
Degree of sensitization distance0.30.30.4-0.5-0.60.60.3
Degree of sensitization stereotypy1.51.62.0-0.9-1.41.41.4
Conditioned locomotion1.72.03.1-1.7-1.51.5-0.7
Cocaine response after cond. corrected6.27.011.6-3.4-2.82.8-0.8
Cocaine response after cond. not corrected6.47.011.5-3.4-2.92.8-0.9
Cocaine response before conditioning0.60.71.21.10.9-0.9-0.1
Saline control response0.10.10.1-0.3-0.30.3-0.0
Bone: connectivity density0.61.03.60.3-0.40.41.9
Bone: cortical apparent density1.01.32.2-1.5-1.21.20.4
Bone: cortical area0.60.81.7-0.4-0.90.91.3
Bone: cortical porosity0.60.71.21.10.8-0.70.5
Bone: cortical porosity0.60.61.70.90.3-0.21.3
Bone: cortical thickness1.01.62.0-1.0-1.41.41.2
Bone: cortical thickness0.50.51.4-0.8-0.30.2-1.2
Bone: cortical tissue density0.71.01.8-1.3-1.01.00.3
Condit. Reinf. active minus inactive responses4.34.86.32.42.5-2.5-1.0
Condit. Reinf. active-inactive response ratio1.82.02.41.01.5-1.5-1.5
Condit. Reinf. active responses4.35.38.62.92.5-2.50.2
Condit. Reinf. inactive responses1.92.34.32.11.3-1.21.3
Incentive salience index mean2.93.65.92.42.1-2.00.2
Condit. Reinf. lever presses1.31.84.71.40.5-0.42.2
Condit. Reinf. active minus inactive responses1.61.93.30.81.3-1.4-1.8
Condit. Reinf. active-inactive response ratio0.60.61.7-0.8-0.20.1-1.3
Condit. Reinf. active responses1.41.92.21.01.5-1.5-1.4
Condit. Reinf. inactive responses0.91.11.41.01.2-1.2-0.7
Condit. Reinf. lever presses1.82.42.91.21.6-1.6-1.7
Condit. Reinf. lever reinforcers received1.11.52.80.71.1-1.2-1.7
Conditioned reinforcement - actives1.91.92.71.61.5-1.5-0.6
Conditioned reinforcement - inactives0.40.50.6-0.8-0.70.7-0.5
Conditioned locomotion6.07.29.13.03.0-3.0-1.4
Patch foraging indifference point 0 sec0.10.20.3-0.3-0.50.50.6
Patch foraging indifference point AUC0.50.60.80.80.9-0.9-0.5
Delay disc. indifference point, 0s delay6.36.910.6-1.7-2.62.73.3
Delay disc. indifference point, 16s delay0.10.10.3-0.6-0.30.30.1
Delay disc. indifference point, 2s delay4.75.26.6-2.1-2.52.61.9
Delay disc. indifference point, 24s delay1.01.01.7-1.3-1.11.10.0
Delay disc. indifference point, 4s delay0.70.80.9-0.8-0.91.00.8
Delay disc. indifference point, 8s delay1.51.52.5-1.6-1.31.3-0.1
Indifference point function ln k0.30.40.6-0.8-0.70.6-0.2
Indifference point function log k0.30.40.6-0.8-0.70.6-0.2
Patch foraging total patch changes 0 sec0.10.10.2-0.3-0.40.40.4
Patch foraging total patch changes 12 sec0.30.50.7-0.8-0.70.7-0.3
Patch foraging total patch changes 18 sec0.91.11.51.21.2-1.2-0.5
Patch foraging total patch changes 24 sec0.00.00.00.20.2-0.20.1
Patch foraging total patch changes 6 sec0.10.20.20.50.5-0.50.1
Patch foraging time to switch 0 sec1.31.96.30.1-0.80.92.5
Patch foraging water rate 0 sec0.91.44.3-1.1-0.40.3-2.1
Patch foraging water rate 12 sec2.13.25.7-2.4-1.71.6-1.4
Patch foraging water rate 18 sec2.12.99.5-1.4-0.30.2-3.1
Patch foraging water rate 24 sec2.33.26.5-2.0-1.11.0-2.6
Patch foraging water rate 6 sec1.01.45.1-0.70.1-0.2-2.3
Seeking ratio, delayed vs. immediate footshock3.54.05.52.22.3-2.3-0.5
Distance traveled before self-admin0.60.60.9-0.6-0.70.80.9
Distance traveled after self-admin0.50.50.70.80.8-0.80.1
Extensor digitorum longus weight3.915.420.5-4.5-4.54.50.5
Bone: elastic displacement0.10.10.10.20.3-0.40.0
Bone: elastic work0.30.40.5-0.7-0.70.70.5
Bone: endosteal estimation0.10.20.3-0.4-0.50.50.6
Bone: endosteal perimeter0.30.71.31.10.8-0.80.3
Epididymis fat weight0.30.60.80.70.9-0.9-0.8
Delta time in closed arm before/after self-admin2.22.23.2-1.8-1.21.1-1.7
Delta time in open arm before/after self-admin1.01.01.1-0.9-1.01.11.0
Diff in mean of infusions in LGA sessions1.82.02.61.51.6-1.6-0.7
Delay discount exponential model param2.02.12.81.71.6-1.6-0.6
Extinction: sum of active levers before priming1.11.11.60.81.0-1.1-1.3
Active lever presses in extinction session 61.91.92.61.51.6-1.6-0.3
Bone: final force1.11.82.2-1.1-1.51.51.3
Bone: final moment0.91.51.8-1.0-1.31.31.2
Food consumed during 24 hour testing period0.80.91.9-1.4-1.00.9-0.0
Glucose1.52.33.4-1.8-1.71.70.4
Heart weight0.30.41.3-0.00.4-0.4-1.1
Delay discount hyperbolic model param2.72.83.61.91.9-1.9-0.8
Intermittent access intake day 1-15 change5.55.46.92.32.6-2.6-1.6
Intermittent access intake escalation5.25.15.91.92.4-2.4-2.3
Intermittent access intake escalation 26.26.27.32.12.7-2.7-2.4
Intermitt. access day 1 inactive lever presses0.30.31.2-0.10.2-0.2-1.1
Intermitt. access day 15 inactive lever presses0.50.50.60.60.7-0.8-0.8
Intermitt. access escalation Index0.50.41.5-0.0-0.30.41.2
Intermittent access day 1 total infusions0.00.00.0-0.1-0.20.20.1
Intermittent access day 15 total infusions1.71.92.21.11.5-1.5-1.4
Intermittent access terminal intake (last 3 days)0.91.01.11.01.1-1.1-0.8
Intermittent access total infusions0.20.20.40.30.5-0.5-0.6
Intermittent access day 1 locomotion0.40.40.50.50.7-0.7-0.6
Intermittent access day 15 total locomotion3.23.44.41.92.1-2.1-1.1
Intermittent access total locomotion0.81.01.31.11.1-1.1-0.4
Intermittent access standard deviation2.22.32.71.31.6-1.6-1.5
Left kidney weight0.10.20.60.30.3-0.20.8
Right kidney weight1.02.94.11.82.0-2.0-0.6
Cocaine induced anxiety0.91.01.51.20.9-0.81.1
Post-drug Anxiety0.91.01.61.30.9-0.80.9
Baseline Anxiety0.40.41.40.00.3-0.4-1.2
Tail length2.68.010.02.83.2-3.2-2.0
Length with tail1.65.77.62.72.7-2.7-0.7
Length without tail0.30.71.41.00.5-0.41.2
Times rat made contact with spout0.50.61.3-1.1-0.60.6-0.7
Lifetime Intake0.10.10.10.20.3-0.3-0.3
Liver weight, left1.82.83.7-1.9-1.91.90.5
Liver weight, right1.11.82.4-1.2-1.51.61.2
Locomotor activity2.84.57.22.72.3-2.30.4
Locomotor testing distance1.52.63.82.01.8-1.80.0
Locomotor testing rearing0.10.20.7-0.3-0.00.0-0.9
Locomotion in novel chamber0.10.10.3-0.20.3-0.3-0.5
Locomotion in novel chamber post-restriction0.81.01.20.81.0-1.1-1.1
Fecal boli incidents, locomotor time 11.51.62.1-1.4-1.41.40.5
Change in fecal boli incidents, locomotor task0.10.10.20.40.3-0.30.2
Time >=10cm from walls, locomotor time 11.01.02.6-0.5-0.80.91.6
Bouts of movement, locomotor time 10.20.20.30.30.5-0.5-0.5
Total resting periods, locomotor time 10.30.30.40.50.6-0.6-0.4
Rest time, locomotor task time 10.50.61.01.00.9-0.80.1
Distance moved, locomotor task time 10.91.01.9-0.6-0.90.91.4
Vertical activity count, locomotor time 10.80.81.5-1.2-0.80.8-0.6
Time >=10cm from walls, locomotor time 21.71.82.7-1.6-1.51.50.2
Bouts of movement, locomotor time 20.80.91.31.10.9-0.90.8
Total resting periods, locomotor time 20.80.91.31.10.9-0.80.9
Rest time, locomotor task time 20.60.70.91.00.9-0.90.4
Distance moved, locomotor task time 20.60.71.0-0.9-1.01.0-0.0
Vertical activity count, locomotor time 21.01.01.4-1.2-1.11.0-0.7
Light reinforcement 15.510.113.93.73.6-3.6-0.7
Light reinforcement 22.02.74.12.01.8-1.8-0.2
Bone: marrow area0.10.20.3-0.4-0.50.50.6
Bone: maximum diameter0.81.52.71.61.3-1.20.6
Bone: maximum force1.11.82.4-1.2-1.51.51.0
Bone: maximum moment0.91.51.9-1.2-1.41.40.9
Mean time between licks in bursts3.44.86.02.22.4-2.4-1.6
Mean num. licks in bursts0.00.00.1-0.1-0.10.10.3
Cd content in liver0.30.30.4-0.5-0.60.60.5
Co content in liver0.50.60.80.90.8-0.8-0.5
Cu content in liver0.40.51.70.3-0.20.31.3
Fe content in liver0.20.20.30.60.3-0.3-0.6
K content in liver0.80.82.01.10.3-0.21.4
Mg content in liver0.70.72.10.90.1-0.11.4
Mn content in liver2.62.95.52.31.4-1.31.7
Na content in liver1.01.13.10.4-0.60.71.8
Rb content in liver0.60.82.60.1-0.50.51.6
Se content in liver0.50.61.11.10.8-0.70.1
Sr content in liver0.40.31.1-0.4-0.10.0-1.1
Zn content in liver1.92.15.50.31.1-1.2-2.3
Bone: minimum diameter0.10.10.40.40.1-0.00.6
Time in familiar zone, hab. session 12.11.92.41.01.5-1.5-1.6
Time in novel zone, hab. session 11.21.22.3-0.6-1.01.01.5
Total zone transitions, hab. session 11.72.44.02.01.4-1.41.3
Total locomotion distance, hab. session 12.73.86.62.61.6-1.51.9
Locomotion velocity, hab. session 13.04.37.62.81.9-1.81.6
Time in familiar zone, hab. session 25.35.46.81.62.6-2.6-2.4
Time in novel zone, hab. session 24.44.45.1-1.8-2.22.32.0
Total zone transitions, hab. session 21.62.17.70.80.10.02.8
Total locomotion distance, hab. session 21.92.53.41.91.5-1.41.4
Locomotion velocity, hab. session 22.23.03.92.01.5-1.41.9
Novel to familiar place preference ratio4.04.15.6-1.4-2.12.12.4
Novelty place preference2.52.64.2-1.0-1.61.62.1
Time in novel zone, NPP test2.72.83.9-1.2-1.71.72.0
Total zone transitions, NPP test0.81.13.60.90.3-0.21.9
Total locomotion distance, NPP test0.91.23.81.10.3-0.21.9
Locomotion velocity, NPP test1.01.43.41.20.5-0.51.8
Intraocular pressure0.81.23.3-1.1-0.30.2-1.8
Delta distance traveled before/after self-admin1.61.72.21.51.5-1.5-0.6
Delta ambulatory time before/after self-admin1.82.02.71.71.6-1.6-0.4
Parametrial fat weight0.30.60.80.50.8-0.8-0.9
Pavlov. Cond. lever latency0.70.91.8-1.2-0.40.3-1.4
Pavlov. Cond. magazine entry latency3.54.55.92.42.4-2.3-1.1
Pavlov. Cond. change in total contacts0.40.40.91.00.6-0.50.2
Pavlov. Cond. index score1.21.53.21.81.2-1.10.5
Pavlov. Cond. latency score1.51.93.92.01.2-1.10.9
Pavlov. Cond. lever contacts1.01.22.21.40.6-0.51.5
Pavlov. Cond. magazine entry number1.21.52.4-1.6-1.31.30.4
Pavlov. Cond. intertrial magazine entries0.30.41.2-0.30.1-0.2-1.1
Pavlov. Cond. lever-magazine prob. diff.1.62.03.81.91.5-1.40.3
Pavlov. Cond. response bias1.72.03.31.81.6-1.5-0.4
Pavlov. Cond. lever latency0.40.50.6-0.7-0.70.80.7
Pavlov. Cond. magazine entry latency0.40.40.50.70.7-0.7-0.4
Pavlov. Cond. change in total contacts0.40.50.80.40.7-0.7-0.9
Pavlov. Cond. index score0.50.70.80.70.8-0.8-0.9
Pavlov. Cond. latency score0.40.50.60.70.8-0.8-0.6
Pavlov. Cond. lever contacts0.50.71.30.50.7-0.8-1.1
Pavlov. Cond. magazine entry number0.60.70.9-1.0-0.90.90.6
Pavlov. Cond. intertrial magazine entries0.50.61.0-1.0-0.70.7-0.5
Pavlov. Cond. lever-magazine prob. diff.0.50.70.80.80.9-0.9-0.7
Pavlov. Cond. response bias1.21.62.30.91.3-1.3-1.5
Time in closed arm before self-admin1.01.13.6-0.0-0.60.71.9
Time in closed arm after self-admin0.00.00.10.00.1-0.1-0.3
Time in open arm before self-admin0.50.60.70.60.8-0.8-0.8
Time in open arm after self-admin0.70.81.1-1.1-1.01.00.3
Bone: periosteal estimation0.30.61.6-0.2-0.60.71.3
Bone: periosteal perimeter0.20.40.70.80.4-0.30.9
Bone: post-yield work0.30.40.7-0.7-0.80.8-0.0
Progressive ratio test 1 active lever presses0.20.20.3-0.5-0.20.2-0.6
Progressive ratio test 1 breakpoint0.20.20.4-0.6-0.30.3-0.5
Progressive ratio test 1 inactive lever presses0.00.00.10.10.2-0.2-0.1
Progressive ratio test 2 active lever presses0.30.31.0-0.00.3-0.3-1.0
Progressive ratio test 2 breakpoint0.20.20.40.30.4-0.4-0.6
Progressive ratio test 2 inactive lever presses0.10.10.20.40.3-0.20.1
Incentive Sensitization - Responses0.20.20.7-0.10.2-0.2-0.9
Incentive Sensitization - Breakpoint0.20.20.70.00.3-0.3-0.8
Sum of active levers in priming session hrs 5-60.00.00.00.10.0-0.00.2
Progressive ratio0.00.10.1-0.2-0.30.30.0
Food seeking constrained by brief footshock0.60.71.21.10.9-0.80.4
Seeking ratio, punishment vs. effort0.30.40.60.80.7-0.60.4
Retroperitoneal fat weight0.20.60.8-0.9-0.80.80.1
Reaction time number correct1.31.83.0-1.7-1.11.0-1.4
Reaction time mean minus median0.50.60.80.60.8-0.8-0.9
Reaction time mean minus median AUC0.10.20.60.40.1-0.00.8
Reaction time num false alarms0.50.71.6-0.7-0.60.5-1.3
Reaction time num false alarms AUC0.70.92.1-0.9-0.70.6-1.4
Reaction time trials correct on left1.31.83.0-1.7-1.11.0-1.4
Reaction time trials on left1.21.73.0-1.7-1.11.0-1.3
Reaction time mean0.10.10.2-0.2-0.20.20.5
Reaction time mean AUC0.10.10.3-0.2-0.30.30.5
Median of all reaction times0.30.50.8-0.5-0.70.70.9
Reaction time omissions0.10.20.20.30.5-0.50.2
Reaction time false alarm rate0.00.00.10.1-0.20.2-0.2
Reaction time premature initiation rate0.81.01.70.51.0-1.1-1.3
Reaction time premature initiations1.01.44.6-0.40.5-0.6-2.1
Std. dev. reaction times0.10.10.10.30.3-0.3-0.3
Reaction time trials completed1.21.73.0-1.7-1.11.0-1.3
Reaction time trials AUC1.42.03.3-1.8-1.11.0-1.6
Run reversals in cocaine runway, females0.40.40.50.70.7-0.7-0.0
Run reversals in cocaine runway, males1.51.41.91.41.4-1.4-0.2
Latency to leave start box in cocaine runway0.80.91.41.20.8-0.70.9
Latency to leave start box in cocaine runway, F1.01.14.20.4-0.20.32.1
Latency to leave start box in cocaine runway, M2.42.33.31.11.5-1.6-1.8
Std. dev. time between licks in bursts0.50.71.01.00.9-0.9-0.0
Total sessions with >9 infusions0.10.10.2-0.0-0.10.10.5
Short access day 1 total inactive lever presses0.10.10.10.40.4-0.4-0.0
Short access day 10 total inactive lever presses0.00.00.1-0.2-0.10.1-0.3
Short access day 1 total infusions0.40.40.80.90.6-0.50.6
Short access day 10 total infusions0.10.20.6-0.10.2-0.2-0.8
Short access total infusions0.00.00.00.10.0-0.00.1
Short access day 1 locomotion0.91.01.41.21.1-1.10.0
Short access day 10 total locomotion3.03.44.21.82.0-2.0-1.5
Short access total locomotion0.70.71.01.01.0-0.9-0.3
One hour access (0.3 mA shock)0.10.10.1-0.3-0.40.4-0.1
Compulsive drug intake1.21.31.6-0.8-1.21.21.3
One hour access (shock baseline)0.30.41.3-0.00.3-0.3-1.1
Social response proportion0.80.91.31.21.0-1.00.6
Social responses5.87.510.63.33.1-3.1-0.5
Social time0.50.70.7-0.7-0.80.90.9
Soleus weight7.722.529.6-5.2-5.45.41.9
Bone: stiffness2.13.34.7-1.6-2.12.21.3
Tibialis anterior weight0.92.94.1-1.8-2.02.00.7
Time to tail flick, vehicle, before self-admin0.70.71.11.00.8-0.80.8
Time to tail flick, vehicle, after self-admin0.50.62.0-0.00.3-0.3-1.4
Time to tail flick, test, before self-admin0.50.40.70.80.5-0.50.8
Time to tail flick, test, after self-admin0.40.40.70.80.7-0.70.2
Delta time to tail flick, vehicle, before/after SA1.00.91.9-1.0-0.70.6-1.4
Delta time to tail flick, test, before/after SA0.40.41.10.20.4-0.4-1.1
Tibia length0.71.92.51.31.6-1.6-0.9
Ambulatory time before self-admin0.50.50.6-0.6-0.70.70.8
Ambulatory time after self-admin0.30.30.40.60.6-0.60.2
Bone: tissue strength1.61.51.9-1.1-1.41.41.1
Total heroin consumption1.72.02.61.51.6-1.6-0.6
Bone: trabecular number1.01.62.91.71.2-1.11.0
Bone: trabecular spacing1.92.44.2-1.9-1.00.9-2.0
Bone: trabecular thickness2.32.89.71.20.10.03.1
Bone: trabecular tissue density1.31.82.4-1.6-1.51.50.3
Water consumed over 24 hours0.60.81.2-0.7-0.80.91.1
Number of responses in last shaping day0.10.10.20.40.4-0.4-0.3