Tax1bp3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Tax1bp3 0.2 0.1 5.6e-16 0.12 0.12 0.11 0.12 2.1e-13 2.2e-13 3.9e-12 2.2e-13
2 Brain gene expression Tax1bp3 0.04 0.02 5.6e-04 0.02 0.03 0.02 0.02 9.2e-03 8.8e-04 7.6e-03 1.1e-02
3 Liver gene expression Tax1bp3 0.23 0.11 0.0e+00 0.14 0.14 0.14 0.15 3.0e-15 3.6e-15 2.0e-15 5.4e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.91.63.2-0.71.01.8
Area under the delay curve0.10.10.30.0-0.3-0.5
BMI with tail0.10.40.7-0.8-0.40.7
BMI without tail0.40.91.4-1.20.51.1
Body weight1.25.29.3-1.42.03.0
Weight adjusted by age1.92.13.9-2.0-1.50.6
Bone surface0.61.12.1-1.4-0.31.1
Bone volume0.81.42.8-1.7-0.21.1
Breakpoint value in progressive ratio session1.01.12.2-1.10.11.5
Number of licking bursts0.10.20.40.60.0-0.3
Context. condit. distance diff. score0.91.01.6-1.3-0.51.1
Locomotion velocity, session 12.62.84.2-1.71.02.1
Locomotion distance, session 10.50.61.6-1.3-0.10.5
Locomotion velocity, session 21.01.22.80.31.70.9
Locomotion distance, session 20.40.60.9-0.60.61.0
Locomotion velocity, session 31.61.93.51.90.9-1.1
Locomotion distance, session 30.10.10.20.5-0.1-0.2
Stereotopy head waving bouts, day 30.20.20.60.10.80.2
Stereotopy head waving duration, day 30.50.61.70.1-0.5-1.3
Locomotion velocity, session 70.10.10.3-0.2-0.6-0.1
Locomotion distance, session 70.10.10.30.1-0.60.1
Stereotopy head waving bouts, day 70.70.81.6-1.30.40.8
Stereotopy head waving duration, day 70.91.12.2-1.50.50.9
Locomotion velocity, session 80.50.61.5-1.2-0.30.6
Locomotion distance, session 81.42.13.5-1.60.41.9
Degree of sensitization distance0.40.40.9-1.0-0.40.5
Degree of sensitization stereotypy1.41.52.0-1.30.91.4
Conditioned locomotion0.80.91.31.1-0.4-1.1
Cocaine response after cond. corrected0.50.60.70.60.80.8
Cocaine response after cond. not corrected0.40.40.70.20.70.9
Cocaine response before conditioning0.40.51.3-1.1-0.30.4
Saline control response0.30.40.8-0.9-0.20.4
Bone: connectivity density1.01.63.1-1.20.41.8
Bone: cortical apparent density0.81.12.01.4-0.6-0.9
Bone: cortical area0.30.41.00.5-0.2-1.0
Bone: cortical porosity1.71.93.71.01.90.9
Bone: cortical porosity1.41.63.01.11.70.6
Bone: cortical thickness1.52.44.92.21.2-1.0
Bone: cortical thickness3.13.65.82.22.40.3
Bone: cortical tissue density0.60.81.61.3-0.5-0.8
Condit. Reinf. active minus inactive responses0.70.81.10.91.10.6
Condit. Reinf. active-inactive response ratio0.60.61.20.71.10.4
Condit. Reinf. active responses0.40.50.60.80.70.6
Condit. Reinf. inactive responses0.10.10.40.2-0.6-0.1
Incentive salience index mean1.21.52.61.01.61.0
Condit. Reinf. lever presses2.23.05.00.82.21.8
Condit. Reinf. active minus inactive responses0.50.60.80.70.90.7
Condit. Reinf. active-inactive response ratio0.60.60.90.91.00.4
Condit. Reinf. active responses0.20.30.30.50.50.6
Condit. Reinf. inactive responses0.20.30.6-0.2-0.8-0.3
Condit. Reinf. lever presses0.40.50.80.8-0.3-0.9
Condit. Reinf. lever reinforcers received0.10.10.20.50.20.3
Conditioned reinforcement - actives0.90.91.7-0.9-1.30.3
Conditioned reinforcement - inactives1.41.52.5-1.6-1.40.2
Conditioned locomotion0.40.50.9-0.4-0.9-0.7
Patch foraging indifference point 0 sec1.11.83.01.41.70.6
Patch foraging indifference point AUC1.61.82.9-1.1-1.7-1.2
Delay disc. indifference point, 0s delay1.11.22.8-1.7-0.90.0
Delay disc. indifference point, 16s delay0.90.91.6-0.5-1.3-0.8
Delay disc. indifference point, 2s delay0.20.20.30.50.4-0.5
Delay disc. indifference point, 24s delay0.40.41.01.00.4-0.2
Delay disc. indifference point, 4s delay0.20.20.5-0.7-0.30.0
Delay disc. indifference point, 8s delay0.00.00.0-0.00.1-0.1
Indifference point function ln k3.65.17.72.82.60.9
Indifference point function log k3.65.17.72.82.60.9
Patch foraging total patch changes 0 sec0.81.32.41.11.50.5
Patch foraging total patch changes 12 sec0.50.61.6-1.3-0.5-0.1
Patch foraging total patch changes 18 sec0.30.30.9-1.0-0.2-0.1
Patch foraging total patch changes 24 sec0.30.30.4-0.5-0.6-0.6
Patch foraging total patch changes 6 sec0.71.11.3-1.2-1.1-0.8
Patch foraging time to switch 0 sec0.81.23.3-1.8-0.30.4
Patch foraging water rate 0 sec0.50.81.91.40.1-0.7
Patch foraging water rate 12 sec0.20.30.4-0.50.40.6
Patch foraging water rate 18 sec0.60.81.30.50.81.1
Patch foraging water rate 24 sec0.00.00.10.2-0.1-0.3
Patch foraging water rate 6 sec0.20.30.70.80.1-0.5
Seeking ratio, delayed vs. immediate footshock0.40.50.70.70.4-0.9
Distance traveled before self-admin0.70.71.1-0.3-1.0-1.0
Distance traveled after self-admin3.03.37.6-2.8-1.5-0.1
Extensor digitorum longus weight2.28.617.4-4.2-2.71.1
Bone: elastic displacement0.50.50.70.6-0.7-0.9
Bone: elastic work0.91.22.21.50.4-1.1
Bone: endosteal estimation1.73.65.8-2.4-2.1-0.6
Bone: endosteal perimeter1.94.06.2-2.5-2.4-0.4
Epididymis fat weight2.45.711.1-3.3-0.62.3
Delta time in closed arm before/after self-admin0.80.81.2-1.1-1.0-0.3
Delta time in open arm before/after self-admin0.50.51.0-1.0-0.40.6
Diff in mean of infusions in LGA sessions0.70.71.9-0.10.51.4
Delay discount exponential model param0.10.10.1-0.2-0.10.3
Extinction: sum of active levers before priming1.61.62.7-1.40.31.7
Active lever presses in extinction session 61.21.12.0-1.4-0.41.1
Bone: final force0.20.31.0-1.00.20.2
Bone: final moment0.20.30.9-0.9-0.10.0
Food consumed during 24 hour testing period0.40.50.60.70.80.6
Glucose1.62.44.90.9-1.3-2.2
Heart weight0.60.92.0-1.4-0.40.7
Delay discount hyperbolic model param0.10.10.1-0.1-0.00.4
Intermittent access intake day 1-15 change2.72.64.9-0.6-2.2-1.6
Intermittent access intake escalation2.92.94.6-0.4-2.2-1.9
Intermittent access intake escalation 22.62.65.00.5-1.6-2.2
Intermitt. access day 1 inactive lever presses0.80.81.50.4-0.8-1.2
Intermitt. access day 15 inactive lever presses0.10.10.20.20.5-0.0
Intermitt. access escalation Index2.32.03.3-0.91.41.8
Intermittent access day 1 total infusions1.31.52.9-1.7-1.20.6
Intermittent access day 15 total infusions4.44.99.0-2.2-3.0-1.0
Intermittent access terminal intake (last 3 days)2.93.15.0-2.2-2.10.0
Intermittent access total infusions1.92.13.5-1.7-1.9-0.3
Intermittent access day 1 locomotion1.01.02.4-1.6-0.80.2
Intermittent access day 15 total locomotion1.51.62.7-1.0-1.6-1.0
Intermittent access total locomotion0.40.50.9-1.0-0.6-0.2
Intermittent access standard deviation6.26.513.2-1.3-3.6-2.2
Left kidney weight0.10.20.2-0.50.3-0.5
Right kidney weight0.00.10.1-0.20.3-0.3
Cocaine induced anxiety1.01.12.41.60.4-0.8
Post-drug Anxiety0.30.30.70.80.5-0.0
Baseline Anxiety0.50.50.9-1.0-0.60.4
Tail length2.88.512.2-2.03.03.5
Length with tail1.76.19.4-1.32.73.1
Length without tail0.91.93.8-0.91.01.9
Times rat made contact with spout0.80.91.41.21.20.2
Lifetime Intake2.83.25.2-2.1-2.3-0.2
Liver weight, left0.81.32.3-0.21.51.3
Liver weight, right1.01.72.0-1.31.11.4
Locomotor activity0.30.41.1-1.0-0.20.4
Locomotor testing distance1.22.05.0-2.2-0.9-0.0
Locomotor testing rearing2.13.25.8-2.4-1.9-0.5
Locomotion in novel chamber3.24.06.00.1-2.4-2.5
Locomotion in novel chamber post-restriction0.20.20.40.70.1-0.4
Fecal boli incidents, locomotor time 10.20.30.40.60.60.0
Change in fecal boli incidents, locomotor task0.30.30.60.80.4-0.1
Time >=10cm from walls, locomotor time 10.30.30.50.60.70.2
Bouts of movement, locomotor time 10.30.30.60.70.50.4
Total resting periods, locomotor time 10.80.81.91.40.80.2
Rest time, locomotor task time 10.30.40.80.90.1-0.6
Distance moved, locomotor task time 10.80.81.4-1.2-1.10.2
Vertical activity count, locomotor time 10.50.61.3-1.2-0.40.4
Time >=10cm from walls, locomotor time 20.40.51.01.00.6-0.1
Bouts of movement, locomotor time 20.50.61.31.10.70.1
Total resting periods, locomotor time 20.40.40.80.90.60.2
Rest time, locomotor task time 20.50.61.41.20.4-0.3
Distance moved, locomotor task time 21.61.83.1-1.5-1.8-0.5
Vertical activity count, locomotor time 20.20.30.7-0.9-0.20.0
Light reinforcement 10.81.52.8-1.7-1.30.0
Light reinforcement 20.10.20.3-0.3-0.5-0.5
Bone: marrow area1.63.55.7-2.4-2.1-0.6
Bone: maximum diameter0.61.22.0-0.8-1.4-0.9
Bone: maximum force0.20.31.0-1.00.20.0
Bone: maximum moment0.20.41.0-1.0-0.2-0.2
Mean time between licks in bursts1.01.52.9-1.70.41.2
Mean num. licks in bursts0.20.20.50.00.70.5
Cd content in liver0.80.91.8-1.3-0.80.6
Co content in liver0.20.20.4-0.6-0.30.3
Cu content in liver1.21.43.31.81.00.1
Fe content in liver0.81.01.5-0.21.21.1
K content in liver1.21.22.5-0.21.61.0
Mg content in liver0.00.00.10.1-0.1-0.3
Mn content in liver0.91.01.41.21.20.4
Na content in liver0.10.10.30.10.0-0.6
Rb content in liver0.70.91.7-1.0-1.3-0.1
Se content in liver0.60.71.81.30.3-0.6
Sr content in liver1.11.02.2-1.5-0.70.5
Zn content in liver0.20.20.30.5-0.6-0.4
Bone: minimum diameter0.81.53.4-1.9-1.0-0.2
Time in familiar zone, hab. session 10.40.40.8-0.1-0.9-0.6
Time in novel zone, hab. session 10.40.40.80.40.90.5
Total zone transitions, hab. session 13.04.27.1-2.7-2.3-0.1
Total locomotion distance, hab. session 10.20.20.5-0.7-0.40.3
Locomotion velocity, hab. session 10.20.30.6-0.8-0.60.1
Time in familiar zone, hab. session 20.10.10.30.20.30.5
Time in novel zone, hab. session 20.30.30.50.70.1-0.7
Total zone transitions, hab. session 21.31.74.2-2.1-0.70.7
Total locomotion distance, hab. session 20.20.30.8-0.90.10.4
Locomotion velocity, hab. session 20.20.30.9-0.90.10.3
Novel to familiar place preference ratio0.30.30.7-0.0-0.8-0.6
Novelty place preference0.10.10.10.0-0.3-0.2
Time in novel zone, NPP test0.00.00.10.0-0.20.0
Total zone transitions, NPP test1.82.65.2-2.3-1.60.3
Total locomotion distance, NPP test0.30.40.8-0.4-0.9-0.6
Locomotion velocity, NPP test0.50.71.0-0.1-1.0-1.0
Intraocular pressure2.63.67.8-0.9-2.8-1.5
Delta distance traveled before/after self-admin2.12.35.4-2.3-0.11.2
Delta ambulatory time before/after self-admin1.31.43.3-1.80.11.0
Parametrial fat weight7.113.927.7-5.3-0.43.7
Pavlov. Cond. lever latency1.41.82.8-1.5-1.7-0.5
Pavlov. Cond. magazine entry latency2.12.73.81.72.01.0
Pavlov. Cond. change in total contacts1.11.22.91.70.8-0.4
Pavlov. Cond. index score1.72.13.41.31.91.1
Pavlov. Cond. latency score2.12.74.71.42.21.3
Pavlov. Cond. lever contacts1.11.32.11.21.40.7
Pavlov. Cond. magazine entry number0.81.01.9-1.4-1.0-0.5
Pavlov. Cond. intertrial magazine entries2.02.43.5-1.8-1.9-0.4
Pavlov. Cond. lever-magazine prob. diff.1.41.72.61.41.60.9
Pavlov. Cond. response bias1.21.42.01.41.40.7
Pavlov. Cond. lever latency1.31.73.2-1.8-0.11.4
Pavlov. Cond. magazine entry latency0.80.91.71.30.9-0.5
Pavlov. Cond. change in total contacts0.60.81.51.20.7-0.6
Pavlov. Cond. index score1.11.42.21.4-0.1-1.5
Pavlov. Cond. latency score1.41.73.01.5-0.2-1.7
Pavlov. Cond. lever contacts0.50.71.11.00.3-0.9
Pavlov. Cond. magazine entry number0.60.71.3-1.1-0.40.8
Pavlov. Cond. intertrial magazine entries0.60.81.5-1.2-0.40.8
Pavlov. Cond. lever-magazine prob. diff.1.11.42.11.4-0.0-1.5
Pavlov. Cond. response bias0.70.91.71.30.5-0.9
Time in closed arm before self-admin2.12.44.60.42.11.6
Time in closed arm after self-admin0.30.30.80.20.90.1
Time in open arm before self-admin1.71.83.51.1-0.9-1.9
Time in open arm after self-admin1.81.93.9-0.4-2.0-1.3
Bone: periosteal estimation0.71.42.0-1.4-1.3-0.8
Bone: periosteal perimeter0.50.91.4-1.0-1.2-0.6
Bone: post-yield work0.60.81.2-1.00.61.1
Progressive ratio test 1 active lever presses1.11.12.0-1.4-0.80.9
Progressive ratio test 1 breakpoint1.61.73.0-1.7-0.61.3
Progressive ratio test 1 inactive lever presses0.80.91.4-1.2-1.1-0.3
Progressive ratio test 2 active lever presses0.70.81.2-1.1-1.00.5
Progressive ratio test 2 breakpoint0.40.50.8-0.8-0.90.4
Progressive ratio test 2 inactive lever presses1.41.62.6-1.6-1.50.0
Incentive Sensitization - Responses0.10.10.1-0.4-0.30.4
Incentive Sensitization - Breakpoint0.10.10.1-0.4-0.30.3
Sum of active levers in priming session hrs 5-61.81.73.9-0.70.92.0
Progressive ratio0.40.50.7-0.9-0.8-0.3
Food seeking constrained by brief footshock0.10.20.20.30.3-0.5
Seeking ratio, punishment vs. effort0.81.01.61.21.3-0.0
Retroperitoneal fat weight0.20.81.6-0.6-1.3-0.7
Reaction time number correct0.10.20.3-0.00.50.5
Reaction time mean minus median0.60.81.00.9-0.7-1.0
Reaction time mean minus median AUC0.40.61.20.3-1.1-0.6
Reaction time num false alarms0.81.12.01.4-0.5-1.0
Reaction time num false alarms AUC0.71.01.71.3-0.6-1.0
Reaction time trials correct on left0.10.20.3-0.00.50.5
Reaction time trials on left0.10.10.2-0.00.40.5
Reaction time mean0.20.20.30.5-0.4-0.6
Reaction time mean AUC0.50.60.90.8-0.5-1.0
Median of all reaction times0.10.10.20.2-0.3-0.5
Reaction time omissions0.50.61.4-0.6-1.2-0.3
Reaction time false alarm rate0.60.91.21.1-0.7-1.0
Reaction time premature initiation rate1.21.72.21.51.50.8
Reaction time premature initiations1.21.62.21.31.51.0
Std. dev. reaction times0.81.12.11.4-0.4-1.0
Reaction time trials completed0.10.10.2-0.00.40.5
Reaction time trials AUC0.10.10.20.00.40.4
Run reversals in cocaine runway, females0.10.10.20.4-0.2-0.5
Run reversals in cocaine runway, males2.22.13.7-1.0-1.9-1.3
Latency to leave start box in cocaine runway0.10.10.20.10.40.1
Latency to leave start box in cocaine runway, F0.50.51.0-0.01.00.7
Latency to leave start box in cocaine runway, M0.10.10.2-0.4-0.3-0.0
Std. dev. time between licks in bursts0.30.40.7-0.90.20.6
Total sessions with >9 infusions1.61.83.6-1.9-1.30.4
Short access day 1 total inactive lever presses0.20.20.5-0.7-0.10.3
Short access day 10 total inactive lever presses0.20.30.60.40.80.2
Short access day 1 total infusions3.53.77.1-1.8-2.7-1.0
Short access day 10 total infusions1.61.83.5-1.3-1.90.1
Short access total infusions3.43.86.7-2.1-2.6-0.5
Short access day 1 locomotion1.61.73.8-0.7-1.9-0.9
Short access day 10 total locomotion0.40.40.6-0.6-0.8-0.5
Short access total locomotion0.60.61.0-0.7-1.0-0.5
One hour access (0.3 mA shock)1.51.83.4-1.4-1.80.0
Compulsive drug intake1.51.53.10.61.81.0
One hour access (shock baseline)2.02.34.7-1.4-2.2-0.4
Social response proportion3.74.06.10.42.42.5
Social responses1.72.23.4-1.70.61.9
Social time1.21.62.6-1.30.61.6
Soleus weight2.57.211.0-3.01.33.3
Bone: stiffness1.72.74.0-2.01.01.7
Tibialis anterior weight2.38.016.8-4.1-1.32.3
Time to tail flick, vehicle, before self-admin1.21.32.7-0.50.91.7
Time to tail flick, vehicle, after self-admin0.10.10.1-0.3-0.3-0.1
Time to tail flick, test, before self-admin3.43.35.62.02.40.7
Time to tail flick, test, after self-admin0.90.91.70.91.30.4
Delta time to tail flick, vehicle, before/after SA1.71.72.6-0.2-1.6-1.6
Delta time to tail flick, test, before/after SA1.71.52.8-1.2-1.7-0.5
Tibia length1.43.98.40.42.91.8
Ambulatory time before self-admin0.20.20.6-0.0-0.4-0.7
Ambulatory time after self-admin1.51.64.4-2.10.00.7
Bone: tissue strength0.20.20.40.0-0.4-0.6
Total heroin consumption3.64.28.8-0.91.83.0
Bone: trabecular number0.71.22.3-0.21.11.5
Bone: trabecular spacing0.91.12.40.1-1.5-1.0
Bone: trabecular thickness0.50.61.1-0.41.10.7
Bone: trabecular tissue density1.21.73.01.70.1-1.4
Water consumed over 24 hours2.53.04.12.02.00.8
Number of responses in last shaping day1.51.62.9-0.1-1.7-1.4