Tacc3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye alternative polyA XM_006251329.4 0.32 0.16 1.8e-03 0.08 0.05 0.01 0.05 2.2e-02 5.7e-02 2.0e-01 6.0e-02
2 Liver mRNA stability Tacc3 0.08 0.05 3.1e-07 0.07 0.06 0.06 0.07 4.6e-08 3.9e-07 5.4e-07 6.0e-08
3 Adipose gene expression Tacc3 0.03 0.02 3.6e-03 0.02 0.01 0.01 0.01 2.1e-03 2.2e-02 9.4e-03 8.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.22.03.92.00.9-1.1
Area under the delay curve1.51.84.7-0.40.7-2.2
BMI with tail1.24.010.0-3.2-1.30.5
BMI without tail1.13.47.0-2.7-1.51.1
Body weight3.414.728.1-5.3-3.32.3
Weight adjusted by age0.71.12.8-1.7-0.7-0.0
Bone surface0.30.50.80.90.1-0.8
Bone volume0.50.92.01.40.3-0.8
Breakpoint value in progressive ratio session0.10.20.5-0.2-0.00.7
Number of licking bursts1.62.63.9-1.3-1.52.0
Context. condit. distance diff. score0.10.10.2-0.30.5-0.1
Locomotion velocity, session 10.20.20.40.60.4-0.3
Locomotion distance, session 10.40.61.01.00.7-0.4
Locomotion velocity, session 21.21.42.51.61.20.5
Locomotion distance, session 22.33.24.51.82.1-1.3
Locomotion velocity, session 30.30.40.80.20.9-0.5
Locomotion distance, session 30.10.10.2-0.30.4-0.2
Stereotopy head waving bouts, day 30.00.00.00.2-0.20.1
Stereotopy head waving duration, day 30.00.00.00.10.0-0.0
Locomotion velocity, session 71.82.03.0-1.5-0.81.7
Locomotion distance, session 70.30.40.7-0.30.90.6
Stereotopy head waving bouts, day 70.80.92.1-1.5-0.60.6
Stereotopy head waving duration, day 71.61.93.8-1.9-0.91.0
Locomotion velocity, session 80.30.40.70.80.6-0.3
Locomotion distance, session 80.71.01.70.91.3-0.7
Degree of sensitization distance0.40.40.80.60.20.9
Degree of sensitization stereotypy1.01.12.2-1.5-0.70.8
Conditioned locomotion0.91.01.6-0.11.2-1.3
Cocaine response after cond. corrected0.91.11.80.81.4-0.9
Cocaine response after cond. not corrected0.30.40.80.40.9-0.5
Cocaine response before conditioning0.91.01.4-0.7-1.21.1
Saline control response0.10.10.40.60.1-0.1
Bone: connectivity density1.01.52.11.41.0-1.2
Bone: cortical apparent density0.20.30.80.3-0.2-0.9
Bone: cortical area3.14.86.7-2.6-2.31.5
Bone: cortical porosity0.20.20.3-0.50.50.3
Bone: cortical porosity0.40.51.0-1.00.30.5
Bone: cortical thickness2.03.46.5-2.5-1.70.9
Bone: cortical thickness0.70.81.4-0.40.9-1.2
Bone: cortical tissue density0.20.30.90.4-0.1-0.9
Condit. Reinf. active minus inactive responses0.70.81.30.91.1-0.6
Condit. Reinf. active-inactive response ratio1.51.62.01.41.4-1.0
Condit. Reinf. active responses0.30.30.50.60.7-0.4
Condit. Reinf. inactive responses0.60.71.2-0.8-1.10.7
Incentive salience index mean0.10.20.30.50.4-0.3
Condit. Reinf. lever presses0.10.10.2-0.2-0.4-0.2
Condit. Reinf. active minus inactive responses0.81.11.6-0.7-1.11.3
Condit. Reinf. active-inactive response ratio0.30.40.50.30.7-0.7
Condit. Reinf. active responses0.10.20.40.1-0.40.6
Condit. Reinf. inactive responses0.20.20.30.3-0.40.6
Condit. Reinf. lever presses0.30.40.6-0.8-0.50.5
Condit. Reinf. lever reinforcers received0.10.10.1-0.2-0.20.4
Conditioned reinforcement - actives0.10.10.2-0.40.1-0.3
Conditioned reinforcement - inactives0.20.20.4-0.5-0.60.1
Conditioned locomotion0.91.11.8-1.3-0.51.2
Patch foraging indifference point 0 sec0.10.20.4-0.2-0.60.4
Patch foraging indifference point AUC0.10.10.20.4-0.20.4
Delay disc. indifference point, 0s delay4.44.810.0-1.11.7-3.2
Delay disc. indifference point, 16s delay1.01.12.60.60.7-1.6
Delay disc. indifference point, 2s delay1.82.03.9-0.61.3-2.0
Delay disc. indifference point, 24s delay1.82.04.9-0.01.0-2.2
Delay disc. indifference point, 4s delay1.51.63.70.50.9-1.9
Delay disc. indifference point, 8s delay0.40.40.8-0.4-0.6-0.9
Indifference point function ln k0.10.20.50.70.0-0.0
Indifference point function log k0.10.20.50.70.0-0.0
Patch foraging total patch changes 0 sec0.20.30.6-0.3-0.80.6
Patch foraging total patch changes 12 sec0.30.40.6-0.8-0.60.4
Patch foraging total patch changes 18 sec0.20.30.4-0.3-0.50.7
Patch foraging total patch changes 24 sec0.10.10.3-0.50.1-0.1
Patch foraging total patch changes 6 sec0.71.11.7-0.4-1.31.1
Patch foraging time to switch 0 sec0.40.81.9-1.40.3-0.6
Patch foraging water rate 0 sec1.53.14.6-0.3-2.12.1
Patch foraging water rate 12 sec0.30.61.00.2-0.91.0
Patch foraging water rate 18 sec0.81.32.0-0.2-1.31.4
Patch foraging water rate 24 sec2.84.05.8-0.5-2.42.4
Patch foraging water rate 6 sec2.94.25.9-1.1-2.32.4
Seeking ratio, delayed vs. immediate footshock1.61.95.22.30.20.7
Distance traveled before self-admin0.50.71.50.31.2-0.7
Distance traveled after self-admin0.40.51.50.21.2-0.2
Extensor digitorum longus weight2.38.910.3-3.2-3.22.5
Bone: elastic displacement0.50.60.9-0.8-0.90.6
Bone: elastic work3.74.85.6-2.2-2.42.0
Bone: endosteal estimation1.12.32.9-1.3-1.51.7
Bone: endosteal perimeter0.71.42.1-0.8-1.41.3
Epididymis fat weight1.13.78.4-2.9-1.21.0
Delta time in closed arm before/after self-admin0.90.91.20.61.0-1.1
Delta time in open arm before/after self-admin0.80.71.9-1.4-0.6-0.1
Diff in mean of infusions in LGA sessions2.63.24.51.31.8-2.1
Delay discount exponential model param1.51.74.50.3-0.72.1
Extinction: sum of active levers before priming0.00.10.1-0.3-0.2-0.2
Active lever presses in extinction session 60.50.50.9-0.40.9-0.6
Bone: final force3.86.08.6-2.9-2.22.2
Bone: final moment4.16.68.5-2.9-2.32.5
Food consumed during 24 hour testing period0.40.51.1-0.1-1.10.7
Glucose0.40.61.10.1-0.81.1
Heart weight0.81.31.6-1.3-1.11.0
Delay discount hyperbolic model param1.71.95.00.2-0.82.2
Intermittent access intake day 1-15 change1.22.53.81.82.0-0.7
Intermittent access intake escalation0.81.52.41.41.6-0.4
Intermittent access intake escalation 20.91.11.91.41.00.4
Intermitt. access day 1 inactive lever presses0.20.91.61.30.3-0.9
Intermitt. access day 15 inactive lever presses0.20.30.60.80.4-0.5
Intermitt. access escalation Index0.20.30.70.40.8-0.4
Intermittent access day 1 total infusions0.10.20.3-0.40.1-0.6
Intermittent access day 15 total infusions0.10.10.20.40.4-0.2
Intermittent access terminal intake (last 3 days)0.10.20.40.60.3-0.1
Intermittent access total infusions0.00.00.10.3-0.1-0.2
Intermittent access day 1 locomotion0.10.10.3-0.6-0.20.0
Intermittent access day 15 total locomotion0.10.10.2-0.40.4-0.3
Intermittent access total locomotion0.00.00.10.10.30.1
Intermittent access standard deviation0.10.20.40.50.6-0.1
Left kidney weight3.516.423.3-4.8-3.83.4
Right kidney weight2.210.018.9-4.3-2.62.1
Cocaine induced anxiety0.10.10.20.30.30.4
Post-drug Anxiety0.40.41.00.11.0-0.4
Baseline Anxiety0.50.51.0-1.00.4-0.6
Tail length1.24.75.8-1.7-2.32.4
Length with tail3.214.014.6-3.8-3.83.6
Length without tail2.06.49.2-3.0-2.42.0
Times rat made contact with spout0.40.41.21.1-0.20.3
Lifetime Intake0.10.10.10.4-0.20.0
Liver weight, left0.30.40.8-0.9-0.40.6
Liver weight, right2.23.85.7-2.4-1.81.5
Locomotor activity1.42.13.5-0.2-1.71.9
Locomotor testing distance0.91.62.0-1.1-1.41.3
Locomotor testing rearing1.83.74.5-1.6-2.12.0
Locomotion in novel chamber0.50.71.1-0.41.0-0.9
Locomotion in novel chamber post-restriction0.81.32.30.11.2-1.5
Fecal boli incidents, locomotor time 10.00.00.10.20.10.2
Change in fecal boli incidents, locomotor task0.10.10.10.40.10.2
Time >=10cm from walls, locomotor time 11.31.43.0-1.70.2-1.0
Bouts of movement, locomotor time 10.60.71.6-0.30.5-1.3
Total resting periods, locomotor time 10.50.60.9-0.70.6-1.0
Rest time, locomotor task time 11.82.33.2-1.8-1.41.2
Distance moved, locomotor task time 10.20.30.50.70.1-0.7
Vertical activity count, locomotor time 10.51.32.51.60.7-0.9
Time >=10cm from walls, locomotor time 20.40.50.7-0.8-0.50.9
Bouts of movement, locomotor time 20.20.40.50.40.7-0.7
Total resting periods, locomotor time 20.20.30.60.20.4-0.8
Rest time, locomotor task time 20.60.81.8-0.8-1.30.0
Distance moved, locomotor task time 20.30.40.70.60.9-0.2
Vertical activity count, locomotor time 20.81.01.91.01.4-0.4
Light reinforcement 11.33.24.8-2.2-1.71.4
Light reinforcement 22.23.33.8-2.0-1.81.7
Bone: marrow area0.91.92.3-1.3-1.31.5
Bone: maximum diameter3.05.67.6-2.2-2.82.1
Bone: maximum force2.54.44.8-2.2-2.21.9
Bone: maximum moment2.95.15.3-2.2-2.32.3
Mean time between licks in bursts0.30.81.41.2-0.31.0
Mean num. licks in bursts2.03.14.22.11.4-1.7
Cd content in liver0.00.00.00.20.0-0.2
Co content in liver0.40.41.2-1.10.00.3
Cu content in liver2.02.35.10.71.2-2.3
Fe content in liver3.94.77.80.72.4-2.8
K content in liver0.80.81.40.40.9-1.2
Mg content in liver0.50.51.3-1.1-0.40.3
Mn content in liver0.30.41.11.10.1-0.0
Na content in liver0.70.82.10.11.4-0.5
Rb content in liver0.20.20.6-0.8-0.0-0.2
Se content in liver0.20.20.40.40.1-0.7
Sr content in liver2.62.22.8-1.2-1.71.5
Zn content in liver0.91.01.7-0.2-1.31.1
Bone: minimum diameter1.01.82.4-1.1-1.51.3
Time in familiar zone, hab. session 10.20.20.30.20.60.3
Time in novel zone, hab. session 10.30.30.9-0.1-0.90.2
Total zone transitions, hab. session 10.10.20.40.60.20.2
Total locomotion distance, hab. session 10.60.92.21.50.6-0.1
Locomotion velocity, hab. session 10.50.61.51.20.6-0.2
Time in familiar zone, hab. session 23.03.13.91.72.0-1.6
Time in novel zone, hab. session 26.36.48.5-2.3-2.92.3
Total zone transitions, hab. session 20.10.10.4-0.1-0.60.1
Total locomotion distance, hab. session 20.20.20.60.2-0.80.2
Locomotion velocity, hab. session 20.10.10.30.2-0.50.1
Novel to familiar place preference ratio0.50.50.70.80.7-0.6
Novelty place preference0.30.30.50.70.4-0.4
Time in novel zone, NPP test0.20.20.40.70.1-0.1
Total zone transitions, NPP test0.10.20.20.50.5-0.2
Total locomotion distance, NPP test0.71.01.01.01.0-1.0
Locomotion velocity, NPP test1.11.61.91.11.4-1.3
Intraocular pressure0.30.40.7-0.3-0.90.7
Delta distance traveled before/after self-admin0.10.10.2-0.10.4-0.2
Delta ambulatory time before/after self-admin0.40.50.80.70.9-0.4
Parametrial fat weight0.20.50.90.31.0-0.7
Pavlov. Cond. lever latency0.10.10.2-0.00.50.3
Pavlov. Cond. magazine entry latency0.91.12.61.60.3-0.7
Pavlov. Cond. change in total contacts0.80.81.21.10.4-1.0
Pavlov. Cond. index score0.91.11.91.40.4-1.2
Pavlov. Cond. latency score0.70.81.51.20.2-1.0
Pavlov. Cond. lever contacts0.10.10.20.1-0.2-0.4
Pavlov. Cond. magazine entry number1.21.53.1-1.8-0.80.9
Pavlov. Cond. intertrial magazine entries0.70.82.0-1.4-0.30.5
Pavlov. Cond. lever-magazine prob. diff.0.80.91.51.20.3-1.1
Pavlov. Cond. response bias0.50.61.21.10.4-0.7
Pavlov. Cond. lever latency0.30.41.2-1.1-0.20.2
Pavlov. Cond. magazine entry latency1.01.22.1-1.4-0.90.8
Pavlov. Cond. change in total contacts0.00.00.00.2-0.1-0.0
Pavlov. Cond. index score0.00.00.10.2-0.20.1
Pavlov. Cond. latency score0.00.00.10.2-0.20.1
Pavlov. Cond. lever contacts0.71.02.11.40.6-0.7
Pavlov. Cond. magazine entry number1.62.02.11.41.4-1.3
Pavlov. Cond. intertrial magazine entries0.50.81.51.20.7-0.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.1-0.30.2
Pavlov. Cond. response bias0.00.00.10.30.0-0.1
Time in closed arm before self-admin0.20.20.60.2-0.70.4
Time in closed arm after self-admin0.20.20.40.40.3-0.6
Time in open arm before self-admin0.50.50.9-0.7-0.60.9
Time in open arm after self-admin0.91.01.7-1.3-0.80.8
Bone: periosteal estimation2.24.75.4-2.2-2.31.9
Bone: periosteal perimeter1.83.04.1-2.0-1.81.3
Bone: post-yield work0.20.30.91.00.00.1
Progressive ratio test 1 active lever presses0.10.20.2-0.0-0.5-0.5
Progressive ratio test 1 breakpoint0.10.20.30.0-0.4-0.5
Progressive ratio test 1 inactive lever presses0.00.00.1-0.0-0.30.1
Progressive ratio test 2 active lever presses0.70.91.70.80.4-1.3
Progressive ratio test 2 breakpoint0.70.81.60.70.4-1.3
Progressive ratio test 2 inactive lever presses0.00.10.2-0.0-0.1-0.4
Incentive Sensitization - Responses0.91.32.70.80.7-1.6
Incentive Sensitization - Breakpoint0.81.02.20.70.6-1.5
Sum of active levers in priming session hrs 5-60.30.30.60.40.8-0.2
Progressive ratio0.00.00.1-0.3-0.1-0.2
Food seeking constrained by brief footshock0.10.20.5-0.2-0.7-0.2
Seeking ratio, punishment vs. effort0.10.20.50.7-0.3-0.1
Retroperitoneal fat weight0.20.82.2-1.50.4-0.3
Reaction time number correct3.26.29.0-0.9-3.03.0
Reaction time mean minus median0.40.91.31.20.9-0.8
Reaction time mean minus median AUC0.00.10.2-0.50.0-0.2
Reaction time num false alarms0.71.01.5-1.20.7-1.1
Reaction time num false alarms AUC0.81.22.8-1.70.4-0.8
Reaction time trials correct on left3.26.29.0-0.9-3.03.0
Reaction time trials on left3.26.08.6-0.8-2.92.9
Reaction time mean1.32.12.81.11.7-1.5
Reaction time mean AUC1.32.12.81.11.7-1.6
Median of all reaction times1.52.13.01.01.7-1.6
Reaction time omissions0.20.30.40.50.6-0.4
Reaction time false alarm rate1.92.74.2-1.11.6-2.0
Reaction time premature initiation rate0.10.10.3-0.60.20.2
Reaction time premature initiations1.01.82.7-1.0-1.31.6
Std. dev. reaction times0.51.01.30.71.1-1.1
Reaction time trials completed3.26.08.6-0.8-2.92.9
Reaction time trials AUC3.15.98.5-0.8-2.92.9
Run reversals in cocaine runway, females4.14.16.01.02.3-2.5
Run reversals in cocaine runway, males0.10.10.10.1-0.30.3
Latency to leave start box in cocaine runway1.61.85.1-2.3-0.20.6
Latency to leave start box in cocaine runway, F2.12.45.6-2.4-0.81.0
Latency to leave start box in cocaine runway, M0.50.41.2-1.10.3-0.1
Std. dev. time between licks in bursts0.30.40.90.6-0.11.0
Total sessions with >9 infusions0.00.00.00.20.2-0.2
Short access day 1 total inactive lever presses0.50.71.5-0.6-0.31.2
Short access day 10 total inactive lever presses0.30.81.70.6-0.41.3
Short access day 1 total infusions0.10.10.20.20.4-0.4
Short access day 10 total infusions0.40.50.91.0-0.2-0.6
Short access total infusions0.20.30.70.80.0-0.5
Short access day 1 locomotion0.20.30.8-0.0-0.30.9
Short access day 10 total locomotion0.40.71.31.20.7-0.5
Short access total locomotion0.20.30.60.80.40.2
One hour access (0.3 mA shock)0.20.20.4-0.2-0.40.6
Compulsive drug intake0.10.10.2-0.40.40.1
One hour access (shock baseline)0.00.00.00.1-0.20.1
Social response proportion0.50.61.51.2-0.10.4
Social responses1.21.62.7-0.2-1.41.6
Social time1.01.42.61.61.0-0.7
Soleus weight4.111.914.5-2.8-3.83.6
Bone: stiffness0.20.41.0-1.0-0.10.2
Tibialis anterior weight1.24.14.7-2.2-2.11.8
Time to tail flick, vehicle, before self-admin0.80.81.30.21.1-1.1
Time to tail flick, vehicle, after self-admin0.60.81.60.50.8-1.3
Time to tail flick, test, before self-admin0.10.10.3-0.3-0.60.0
Time to tail flick, test, after self-admin0.70.72.20.0-1.5-0.1
Delta time to tail flick, vehicle, before/after SA0.10.10.10.1-0.3-0.3
Delta time to tail flick, test, before/after SA0.30.40.50.7-0.7-0.2
Tibia length0.51.43.0-1.7-0.80.7
Ambulatory time before self-admin0.50.72.0-0.11.4-0.3
Ambulatory time after self-admin1.51.84.20.72.1-0.8
Bone: tissue strength5.05.07.5-1.3-2.42.7
Total heroin consumption1.61.93.6-1.0-1.11.9
Bone: trabecular number0.50.81.51.20.5-0.7
Bone: trabecular spacing1.21.51.7-1.2-1.31.2
Bone: trabecular thickness1.51.93.41.81.0-1.2
Bone: trabecular tissue density0.60.91.40.80.9-1.2
Water consumed over 24 hours0.60.81.11.1-0.70.9
Number of responses in last shaping day1.41.52.30.41.5-1.4