Stip1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg gene expression Stip1 0.14 0.09 5.0e-03 0.07 0.03 0.01 0.03 7.2e-03 6.4e-02 1.6e-01 5.3e-02
2 Brain mRNA stability Stip1 0.07 0.04 2.6e-04 0.01 0.04 0.02 0.03 2.1e-02 2.6e-04 2.4e-03 5.6e-04
3 BLA gene expression Stip1 0.12 0.09 9.1e-03 0.04 0.01 0.04 0.03 5.5e-03 6.8e-02 2.3e-03 9.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.40.60.8-0.60.4
Area under the delay curve0.50.51.00.10.61.0
BMI with tail1.54.79.93.1-1.21.7
BMI without tail0.91.94.02.0-0.11.3
Body weight1.77.318.14.3-2.0-0.1
Weight adjusted by age1.92.13.01.7-1.6-0.8
Bone surface3.35.88.62.9-2.9-0.8
Bone volume1.72.95.51.6-2.3-0.7
Breakpoint value in progressive ratio session2.83.03.61.9-1.9-1.4
Number of licking bursts0.20.30.40.5-0.6-0.3
Context. condit. distance diff. score1.31.51.9-1.41.31.0
Locomotion velocity, session 10.70.71.30.01.01.1
Locomotion distance, session 10.60.71.70.50.51.3
Locomotion velocity, session 21.11.33.31.8-0.8-0.1
Locomotion distance, session 20.60.81.50.70.61.2
Locomotion velocity, session 31.31.63.1-0.81.01.8
Locomotion distance, session 30.20.20.4-0.20.40.6
Stereotopy head waving bouts, day 32.52.95.3-1.11.52.3
Stereotopy head waving duration, day 31.01.11.3-1.10.91.1
Locomotion velocity, session 71.11.22.0-1.10.71.4
Locomotion distance, session 71.31.63.0-0.51.31.7
Stereotopy head waving bouts, day 70.20.20.5-0.3-0.7-0.4
Stereotopy head waving duration, day 71.51.92.51.2-1.6-1.3
Locomotion velocity, session 80.60.81.11.00.60.9
Locomotion distance, session 80.91.32.9-0.50.81.7
Degree of sensitization distance0.70.71.6-0.40.71.3
Degree of sensitization stereotypy1.41.52.40.8-1.5-1.2
Conditioned locomotion0.50.61.51.2-0.40.1
Cocaine response after cond. corrected2.32.63.7-1.41.91.4
Cocaine response after cond. not corrected1.71.92.7-1.11.71.3
Cocaine response before conditioning1.21.51.91.2-1.4-1.0
Saline control response2.02.66.52.5-1.0-0.6
Bone: connectivity density1.32.04.02.0-1.40.1
Bone: cortical apparent density0.20.30.50.5-0.2-0.7
Bone: cortical area1.01.52.31.1-1.5-1.0
Bone: cortical porosity0.00.00.00.2-0.10.0
Bone: cortical porosity0.20.20.60.8-0.3-0.2
Bone: cortical thickness1.62.64.82.2-1.0-1.5
Bone: cortical thickness0.30.40.50.70.70.5
Bone: cortical tissue density0.20.30.60.6-0.3-0.8
Condit. Reinf. active minus inactive responses0.10.10.10.4-0.2-0.3
Condit. Reinf. active-inactive response ratio0.20.20.50.2-0.2-0.7
Condit. Reinf. active responses0.10.10.10.1-0.3-0.3
Condit. Reinf. inactive responses0.10.10.2-0.4-0.20.4
Incentive salience index mean0.10.10.30.6-0.20.1
Condit. Reinf. lever presses0.20.30.40.7-0.60.1
Condit. Reinf. active minus inactive responses0.20.30.5-0.5-0.7-0.4
Condit. Reinf. active-inactive response ratio0.60.61.0-1.0-0.9-0.3
Condit. Reinf. active responses0.10.20.40.1-0.6-0.4
Condit. Reinf. inactive responses0.20.30.70.80.30.2
Condit. Reinf. lever presses2.23.04.81.8-2.2-1.1
Condit. Reinf. lever reinforcers received0.50.71.10.6-1.1-0.8
Conditioned reinforcement - actives0.40.40.7-0.6-0.8-0.2
Conditioned reinforcement - inactives1.92.15.5-2.3-0.2-0.9
Conditioned locomotion3.74.412.2-3.50.9-0.4
Patch foraging indifference point 0 sec0.20.30.8-0.2-0.3-0.9
Patch foraging indifference point AUC4.04.65.52.3-2.4-1.8
Delay disc. indifference point, 0s delay2.52.75.6-0.41.62.4
Delay disc. indifference point, 16s delay0.30.30.9-1.0-0.1-0.3
Delay disc. indifference point, 2s delay0.50.51.4-0.10.31.2
Delay disc. indifference point, 24s delay0.20.20.5-0.00.7-0.2
Delay disc. indifference point, 4s delay1.21.32.20.01.31.5
Delay disc. indifference point, 8s delay1.11.11.80.11.21.4
Indifference point function ln k8.311.614.8-3.63.92.7
Indifference point function log k8.311.614.8-3.63.92.7
Patch foraging total patch changes 0 sec0.10.20.7-0.2-0.0-0.8
Patch foraging total patch changes 12 sec4.25.47.62.8-2.2-1.9
Patch foraging total patch changes 18 sec1.11.51.91.1-1.4-1.1
Patch foraging total patch changes 24 sec3.13.84.52.1-1.9-1.8
Patch foraging total patch changes 6 sec0.40.51.31.1-0.5-0.3
Patch foraging time to switch 0 sec1.01.52.11.4-1.40.7
Patch foraging water rate 0 sec1.82.86.0-2.51.4-0.6
Patch foraging water rate 12 sec4.97.511.6-3.43.30.4
Patch foraging water rate 18 sec3.24.36.2-2.12.51.4
Patch foraging water rate 24 sec2.13.04.5-2.02.10.7
Patch foraging water rate 6 sec3.34.87.5-2.52.70.8
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.4-0.1
Distance traveled before self-admin1.71.82.50.8-1.6-1.5
Distance traveled after self-admin1.11.22.40.5-1.0-1.5
Extensor digitorum longus weight3.814.931.95.6-3.3-1.4
Bone: elastic displacement1.61.83.4-1.31.90.6
Bone: elastic work0.40.50.80.90.70.3
Bone: endosteal estimation0.92.04.3-1.30.32.1
Bone: endosteal perimeter0.71.52.2-1.4-0.31.5
Epididymis fat weight1.02.45.9-2.40.90.6
Delta time in closed arm before/after self-admin1.31.32.9-0.31.70.9
Delta time in open arm before/after self-admin2.32.23.70.6-1.9-1.6
Diff in mean of infusions in LGA sessions0.80.91.60.6-0.8-1.3
Delay discount exponential model param0.40.40.8-0.2-0.6-0.9
Extinction: sum of active levers before priming3.03.05.12.3-1.7-1.0
Active lever presses in extinction session 63.83.75.01.7-2.2-1.8
Bone: final force1.72.85.22.3-1.8-0.4
Bone: final moment1.62.64.62.1-1.7-0.5
Food consumed during 24 hour testing period0.91.11.90.3-1.1-1.4
Glucose1.82.73.4-1.81.21.8
Heart weight2.94.25.6-2.42.11.5
Delay discount hyperbolic model param0.50.51.1-0.2-0.6-1.0
Intermittent access intake day 1-15 change1.21.12.4-0.6-0.8-1.6
Intermittent access intake escalation1.01.02.0-0.6-0.7-1.4
Intermittent access intake escalation 22.02.04.4-0.2-1.2-2.1
Intermitt. access day 1 inactive lever presses1.01.02.8-1.70.50.3
Intermitt. access day 15 inactive lever presses1.51.74.1-2.0-0.5-0.8
Intermitt. access escalation Index2.72.43.3-1.51.81.2
Intermittent access day 1 total infusions3.44.06.5-2.51.22.0
Intermittent access day 15 total infusions2.73.18.8-3.00.50.3
Intermittent access terminal intake (last 3 days)1.51.74.9-2.2-0.1-0.0
Intermittent access total infusions1.92.15.5-2.30.30.8
Intermittent access day 1 locomotion3.53.74.7-2.01.62.2
Intermittent access day 15 total locomotion1.61.75.0-2.20.1-0.0
Intermittent access total locomotion2.32.67.3-2.70.30.7
Intermittent access standard deviation0.70.71.2-1.1-0.2-1.0
Left kidney weight0.20.41.2-1.1-0.0-0.3
Right kidney weight0.30.81.3-0.5-1.2-0.8
Cocaine induced anxiety0.40.50.70.3-0.8-0.8
Post-drug Anxiety1.61.82.61.1-1.6-1.2
Baseline Anxiety0.80.92.11.5-0.5-0.5
Tail length0.41.32.81.7-0.3-1.0
Length with tail1.14.18.22.9-1.5-1.4
Length without tail0.92.03.61.9-1.3-0.8
Times rat made contact with spout0.20.20.70.80.1-0.2
Lifetime Intake2.22.45.0-2.20.81.3
Liver weight, left0.20.40.7-0.40.50.8
Liver weight, right0.91.43.0-0.21.11.7
Locomotor activity1.72.75.0-1.72.20.6
Locomotor testing distance3.04.99.2-2.03.01.3
Locomotor testing rearing2.23.35.7-1.82.41.0
Locomotion in novel chamber1.41.85.2-2.30.00.2
Locomotion in novel chamber post-restriction1.72.04.9-2.20.90.6
Fecal boli incidents, locomotor time 11.01.12.50.3-1.6-0.8
Change in fecal boli incidents, locomotor task3.63.46.1-0.12.02.5
Time >=10cm from walls, locomotor time 10.50.50.8-0.7-0.50.9
Bouts of movement, locomotor time 13.03.35.91.2-1.6-2.4
Total resting periods, locomotor time 12.83.15.51.0-1.6-2.3
Rest time, locomotor task time 10.50.61.5-1.20.50.0
Distance moved, locomotor task time 10.10.10.20.50.00.2
Vertical activity count, locomotor time 10.80.91.5-1.21.00.5
Time >=10cm from walls, locomotor time 20.80.81.50.2-1.2-1.0
Bouts of movement, locomotor time 21.01.12.20.7-0.8-1.5
Total resting periods, locomotor time 20.70.71.60.5-0.6-1.3
Rest time, locomotor task time 22.02.33.5-1.91.31.3
Distance moved, locomotor task time 21.11.31.91.4-0.9-1.1
Vertical activity count, locomotor time 20.20.20.6-0.10.8-0.3
Light reinforcement 10.20.30.7-0.40.0-0.8
Light reinforcement 21.11.51.9-1.4-1.2-1.1
Bone: marrow area1.12.34.9-1.30.52.2
Bone: maximum diameter0.81.53.30.6-1.8-0.9
Bone: maximum force2.13.75.72.4-2.3-0.2
Bone: maximum moment1.83.14.82.2-2.1-0.3
Mean time between licks in bursts0.50.71.30.71.10.7
Mean num. licks in bursts0.20.30.6-0.40.80.1
Cd content in liver0.30.30.4-0.6-0.5-0.5
Co content in liver1.51.83.5-1.31.90.4
Cu content in liver0.30.30.50.5-0.5-0.7
Fe content in liver0.20.30.70.4-0.80.0
K content in liver0.70.61.11.1-0.40.8
Mg content in liver0.20.20.6-0.10.00.8
Mn content in liver2.73.04.91.5-2.2-1.4
Na content in liver0.70.71.20.9-1.1-0.4
Rb content in liver1.82.22.6-1.61.41.5
Se content in liver1.82.24.10.2-2.0-1.5
Sr content in liver4.44.05.21.8-1.9-2.3
Zn content in liver1.41.61.91.0-1.3-1.4
Bone: minimum diameter0.51.01.7-1.10.11.3
Time in familiar zone, hab. session 10.20.20.3-0.50.30.6
Time in novel zone, hab. session 10.70.71.4-0.41.20.7
Total zone transitions, hab. session 10.20.30.70.8-0.5-0.2
Total locomotion distance, hab. session 10.60.81.4-0.80.51.2
Locomotion velocity, hab. session 10.10.20.5-0.30.20.7
Time in familiar zone, hab. session 21.01.11.90.11.41.1
Time in novel zone, hab. session 20.50.50.80.1-0.9-0.8
Total zone transitions, hab. session 20.60.81.21.1-0.11.0
Total locomotion distance, hab. session 21.01.43.3-0.20.81.8
Locomotion velocity, hab. session 21.01.33.3-0.40.71.8
Novel to familiar place preference ratio3.13.25.11.3-2.3-1.6
Novelty place preference2.32.43.81.0-1.9-1.5
Time in novel zone, NPP test1.71.82.80.8-1.7-1.4
Total zone transitions, NPP test1.01.43.41.8-0.90.1
Total locomotion distance, NPP test0.50.71.7-0.10.61.3
Locomotion velocity, NPP test0.30.41.10.00.31.0
Intraocular pressure1.42.04.1-0.7-1.2-2.0
Delta distance traveled before/after self-admin0.40.40.8-0.10.90.6
Delta ambulatory time before/after self-admin0.60.71.4-0.01.20.8
Parametrial fat weight1.52.94.4-1.71.12.1
Pavlov. Cond. lever latency0.20.30.5-0.70.60.2
Pavlov. Cond. magazine entry latency0.30.40.70.6-0.9-0.3
Pavlov. Cond. change in total contacts0.91.01.90.3-1.4-0.9
Pavlov. Cond. index score0.50.60.90.6-0.9-0.8
Pavlov. Cond. latency score0.20.20.30.5-0.6-0.4
Pavlov. Cond. lever contacts0.00.00.00.2-0.00.2
Pavlov. Cond. magazine entry number1.31.62.2-0.81.41.5
Pavlov. Cond. intertrial magazine entries0.80.92.0-0.8-0.4-1.4
Pavlov. Cond. lever-magazine prob. diff.0.70.91.20.9-1.1-0.8
Pavlov. Cond. response bias0.60.71.00.5-1.0-1.0
Pavlov. Cond. lever latency0.91.22.1-1.01.40.8
Pavlov. Cond. magazine entry latency2.93.45.42.3-1.8-1.2
Pavlov. Cond. change in total contacts3.85.28.41.6-2.9-2.2
Pavlov. Cond. index score3.24.15.72.0-2.4-1.6
Pavlov. Cond. latency score2.73.44.81.8-2.2-1.4
Pavlov. Cond. lever contacts1.11.62.31.0-1.5-1.2
Pavlov. Cond. magazine entry number5.97.29.1-3.02.92.1
Pavlov. Cond. intertrial magazine entries0.50.61.2-1.10.70.4
Pavlov. Cond. lever-magazine prob. diff.3.54.55.92.2-2.4-1.7
Pavlov. Cond. response bias2.43.34.41.8-2.1-1.5
Time in closed arm before self-admin0.40.51.10.5-1.0-0.2
Time in closed arm after self-admin1.01.11.7-0.51.11.3
Time in open arm before self-admin2.83.06.5-0.92.51.4
Time in open arm after self-admin0.20.30.8-0.00.1-0.9
Bone: periosteal estimation0.20.40.9-0.1-1.00.5
Bone: periosteal perimeter0.30.51.30.3-1.10.0
Bone: post-yield work1.11.53.10.3-1.81.1
Progressive ratio test 1 active lever presses1.41.53.4-1.80.70.7
Progressive ratio test 1 breakpoint1.11.22.6-1.60.60.7
Progressive ratio test 1 inactive lever presses0.60.61.0-1.00.80.4
Progressive ratio test 2 active lever presses1.81.95.6-2.40.20.4
Progressive ratio test 2 breakpoint2.32.67.4-2.70.40.3
Progressive ratio test 2 inactive lever presses2.73.19.2-3.00.3-0.2
Incentive Sensitization - Responses0.40.40.7-0.8-0.7-0.4
Incentive Sensitization - Breakpoint0.50.51.1-1.1-0.6-0.4
Sum of active levers in priming session hrs 5-65.95.78.21.2-2.9-2.7
Progressive ratio1.01.22.21.5-1.10.1
Food seeking constrained by brief footshock0.50.71.10.30.91.0
Seeking ratio, punishment vs. effort1.92.34.0-1.42.00.9
Retroperitoneal fat weight2.99.719.5-4.42.32.0
Reaction time number correct0.30.40.70.6-0.3-0.8
Reaction time mean minus median3.14.15.82.2-2.4-1.2
Reaction time mean minus median AUC1.72.33.11.8-1.6-1.0
Reaction time num false alarms1.52.14.4-0.82.11.1
Reaction time num false alarms AUC0.81.12.7-0.11.60.7
Reaction time trials correct on left0.30.40.70.6-0.3-0.8
Reaction time trials on left0.30.50.80.7-0.4-0.9
Reaction time mean0.50.61.10.3-1.0-0.9
Reaction time mean AUC0.50.61.10.2-1.1-0.8
Median of all reaction times0.20.30.4-0.2-0.6-0.7
Reaction time omissions0.50.71.61.3-0.7-0.5
Reaction time false alarm rate1.31.83.2-0.71.81.3
Reaction time premature initiation rate0.81.13.11.80.30.4
Reaction time premature initiations1.31.95.42.3-0.1-0.4
Std. dev. reaction times1.01.42.31.0-1.5-1.0
Reaction time trials completed0.30.50.80.7-0.4-0.9
Reaction time trials AUC0.20.20.40.5-0.1-0.6
Run reversals in cocaine runway, females2.01.93.80.51.32.0
Run reversals in cocaine runway, males0.20.20.3-0.10.60.4
Latency to leave start box in cocaine runway0.30.30.6-0.50.10.8
Latency to leave start box in cocaine runway, F0.10.10.1-0.2-0.4-0.3
Latency to leave start box in cocaine runway, M1.11.02.5-0.40.61.6
Std. dev. time between licks in bursts1.21.53.1-0.41.81.1
Total sessions with >9 infusions2.83.14.4-1.51.62.1
Short access day 1 total inactive lever presses2.62.95.5-2.41.50.9
Short access day 10 total inactive lever presses3.33.74.9-2.22.21.2
Short access day 1 total infusions2.62.83.6-1.91.41.7
Short access day 10 total infusions2.22.54.1-1.60.92.0
Short access total infusions2.42.74.3-1.41.32.1
Short access day 1 locomotion1.81.92.3-1.51.21.4
Short access day 10 total locomotion1.01.22.1-1.40.80.9
Short access total locomotion1.41.41.7-1.31.01.3
One hour access (0.3 mA shock)3.94.512.1-3.51.10.6
Compulsive drug intake0.90.92.41.50.50.2
One hour access (shock baseline)2.93.410.2-3.2-0.0-0.2
Social response proportion0.70.71.21.1-0.9-0.4
Social responses0.30.40.70.8-0.3-0.6
Social time0.20.30.90.90.0-0.1
Soleus weight2.67.714.4-3.82.61.5
Bone: stiffness2.03.14.92.1-2.2-0.4
Tibialis anterior weight6.823.342.16.5-4.3-3.0
Time to tail flick, vehicle, before self-admin0.50.50.70.8-0.70.5
Time to tail flick, vehicle, after self-admin1.61.73.21.80.31.3
Time to tail flick, test, before self-admin1.31.31.8-0.71.31.3
Time to tail flick, test, after self-admin0.10.10.20.4-0.0-0.3
Delta time to tail flick, vehicle, before/after SA0.50.50.80.90.50.6
Delta time to tail flick, test, before/after SA2.52.23.51.1-1.4-1.9
Tibia length2.67.312.21.9-3.5-2.5
Ambulatory time before self-admin1.81.93.90.7-2.0-1.2
Ambulatory time after self-admin0.80.81.6-0.2-0.9-1.3
Bone: tissue strength0.20.20.3-0.0-0.6-0.5
Total heroin consumption3.54.27.92.8-1.8-1.2
Bone: trabecular number0.71.12.30.9-1.5-0.5
Bone: trabecular spacing0.70.91.8-0.71.40.6
Bone: trabecular thickness0.20.30.8-0.90.10.0
Bone: trabecular tissue density1.72.45.5-2.31.20.5
Water consumed over 24 hours0.81.01.41.1-0.6-1.2
Number of responses in last shaping day0.70.71.2-1.01.1-0.3