Stip1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg gene expression Stip1 0.17 0.1 2.1e-03 0.01 0.04 0.02 0.01 1.8e-01 2.6e-02 1.1e-01 1.3e-01
2 Brain mRNA stability Stip1 0.07 0.04 1.4e-04 0 0.03 0.03 0.02 2.0e-01 1.6e-03 1.5e-03 1.1e-02
3 PL mRNA stability Stip1 0.04 0.03 7.8e-03 0 0.02 0.01 0.01 1.3e-01 5.2e-03 1.1e-02 5.1e-02
4 Adipose mRNA stability Stip1 0.04 0.03 5.6e-03 0.01 0 0.01 0.01 1.3e-02 1.8e-01 2.6e-02 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.61.2-1.10.7-0.5-0.6
Area under the delay curve0.20.30.5-0.4-0.50.70.5
BMI with tail1.13.810.5-3.21.7-0.6-1.3
BMI without tail0.21.14.0-2.00.10.30.5
Body weight1.46.217.8-4.22.2-1.2-0.8
Weight adjusted by age0.61.72.2-1.51.5-1.3-0.9
Bone surface4.18.19.7-3.13.0-2.8-2.5
Bone volume2.34.65.5-1.82.3-2.1-2.3
Breakpoint value in progressive ratio session1.83.34.5-2.11.8-2.1-0.9
Number of licking bursts0.10.30.4-0.50.5-0.6-0.3
Context. condit. distance diff. score1.21.42.41.1-1.11.60.7
Locomotion velocity, session 10.60.70.9-0.2-0.90.90.9
Locomotion distance, session 10.30.40.7-0.8-0.40.70.3
Locomotion velocity, session 21.11.33.5-1.91.0-0.7-0.4
Locomotion distance, session 20.30.50.8-0.9-0.60.50.6
Locomotion velocity, session 30.70.82.50.2-0.71.60.1
Locomotion distance, session 30.10.10.3-0.0-0.30.60.2
Stereotopy head waving bouts, day 31.31.63.50.6-1.41.90.7
Stereotopy head waving duration, day 30.50.61.10.8-0.81.00.1
Locomotion velocity, session 70.40.40.90.5-0.61.0-0.1
Locomotion distance, session 70.81.01.9-0.0-1.11.41.0
Stereotopy head waving bouts, day 70.60.71.5-0.00.8-0.7-1.2
Stereotopy head waving duration, day 71.51.92.6-1.01.6-1.4-1.4
Locomotion velocity, session 80.60.71.3-1.2-0.60.11.0
Locomotion distance, session 80.30.40.90.2-0.90.90.1
Degree of sensitization distance0.30.30.8-0.1-0.50.90.4
Degree of sensitization stereotypy1.71.92.6-0.71.5-1.5-1.6
Conditioned locomotion0.60.71.8-1.40.4-0.50.8
Cocaine response after cond. corrected1.72.53.81.1-1.71.91.4
Cocaine response after cond. not corrected1.01.52.40.8-1.31.61.1
Cocaine response before conditioning1.51.82.6-0.91.6-1.6-1.1
Saline control response1.92.67.1-2.71.5-1.10.2
Bone: connectivity density1.62.55.1-2.31.5-1.3-1.0
Bone: cortical apparent density0.10.10.2-0.00.3-0.40.4
Bone: cortical area0.91.42.1-1.11.5-1.0-1.2
Bone: cortical porosity0.10.10.3-0.20.1-0.50.0
Bone: cortical porosity0.20.30.5-0.70.3-0.70.1
Bone: cortical thickness1.11.84.5-2.11.2-1.00.6
Bone: cortical thickness0.91.12.5-0.8-0.70.81.6
Bone: cortical tissue density0.10.20.3-0.20.4-0.50.5
Condit. Reinf. active minus inactive responses0.10.10.2-0.40.5-0.10.0
Condit. Reinf. active-inactive response ratio0.10.10.2-0.10.4-0.30.0
Condit. Reinf. active responses0.10.10.4-0.10.6-0.0-0.4
Condit. Reinf. inactive responses0.10.10.30.30.10.2-0.5
Incentive salience index mean0.20.20.5-0.70.60.0-0.2
Condit. Reinf. lever presses0.50.71.0-0.91.0-0.6-0.8
Condit. Reinf. active minus inactive responses0.30.50.80.40.9-0.7-0.6
Condit. Reinf. active-inactive response ratio0.71.22.21.00.9-0.7-1.5
Condit. Reinf. active responses0.30.40.8-0.20.9-0.8-0.4
Condit. Reinf. inactive responses0.30.40.9-0.9-0.10.00.9
Condit. Reinf. lever presses2.33.34.2-1.62.0-1.9-1.6
Condit. Reinf. lever reinforcers received0.60.81.5-0.51.2-1.1-0.6
Conditioned reinforcement - actives0.72.85.60.21.5-1.8-2.4
Conditioned reinforcement - inactives0.92.66.01.90.8-0.3-2.5
Conditioned locomotion2.84.212.53.5-1.21.4-0.8
Patch foraging indifference point 0 sec0.10.20.30.10.60.1-0.5
Patch foraging indifference point AUC1.74.15.9-1.72.4-2.3-1.5
Delay disc. indifference point, 0s delay0.91.01.6-0.1-1.31.20.9
Delay disc. indifference point, 16s delay0.20.30.50.70.20.4-0.5
Delay disc. indifference point, 2s delay0.00.00.1-0.0-0.20.3-0.2
Delay disc. indifference point, 24s delay0.30.40.8-0.1-0.50.90.8
Delay disc. indifference point, 4s delay1.01.01.7-0.4-0.91.31.2
Delay disc. indifference point, 8s delay0.50.91.4-0.3-1.20.91.2
Indifference point function ln k3.610.814.43.2-3.73.82.1
Indifference point function log k3.610.814.43.2-3.73.82.1
Patch foraging total patch changes 0 sec0.00.10.10.00.30.4-0.0
Patch foraging total patch changes 12 sec3.14.26.9-2.62.4-1.8-1.0
Patch foraging total patch changes 18 sec0.71.82.6-1.01.6-1.4-1.3
Patch foraging total patch changes 24 sec0.72.54.4-1.92.1-0.9-1.0
Patch foraging total patch changes 6 sec0.40.62.0-1.40.7-0.1-0.1
Patch foraging time to switch 0 sec0.41.62.7-1.71.1-1.2-1.1
Patch foraging water rate 0 sec0.83.17.22.7-1.41.80.6
Patch foraging water rate 12 sec2.49.612.93.6-3.13.51.9
Patch foraging water rate 18 sec2.14.67.21.9-2.42.71.4
Patch foraging water rate 24 sec2.63.85.22.3-2.02.11.2
Patch foraging water rate 6 sec4.36.39.22.5-2.63.01.8
Seeking ratio, delayed vs. immediate footshock0.10.20.40.5-0.20.60.2
Distance traveled before self-admin1.02.23.3-1.01.8-1.4-1.5
Distance traveled after self-admin0.30.51.0-0.40.9-1.0-0.5
Extensor digitorum longus weight3.614.535.4-6.03.6-2.9-0.9
Bone: elastic displacement2.02.64.11.0-1.61.62.0
Bone: elastic work1.01.32.8-1.2-0.50.81.7
Bone: endosteal estimation0.30.71.20.8-0.50.9-1.1
Bone: endosteal perimeter0.61.54.51.1-0.00.2-2.1
Epididymis fat weight0.73.59.63.1-0.31.1-1.7
Delta time in closed arm before/after self-admin2.42.34.2-0.5-1.11.82.1
Delta time in open arm before/after self-admin2.73.14.3-0.62.1-1.9-2.1
Diff in mean of infusions in LGA sessions0.30.40.9-1.00.8-0.50.1
Delay discount exponential model param0.20.30.40.40.4-0.6-0.5
Extinction: sum of active levers before priming1.32.03.5-1.91.5-1.2-0.8
Active lever presses in extinction session 64.34.45.7-2.02.3-2.4-1.6
Bone: final force1.62.64.8-2.21.6-1.3-1.2
Bone: final moment1.52.44.6-2.11.6-1.2-1.1
Food consumed during 24 hour testing period0.40.81.20.01.0-0.9-1.1
Glucose1.52.43.81.7-1.82.0-0.1
Heart weight1.62.65.10.4-1.82.31.3
Delay discount hyperbolic model param0.20.20.30.40.4-0.6-0.4
Intermittent access intake day 1-15 change0.21.22.11.50.7-0.7-1.3
Intermittent access intake escalation0.31.42.21.30.8-1.0-1.5
Intermittent access intake escalation 20.81.42.41.31.0-0.8-1.5
Intermitt. access day 1 inactive lever presses0.00.20.40.60.2-0.5-0.5
Intermitt. access day 15 inactive lever presses0.42.45.41.61.20.0-2.3
Intermitt. access escalation Index0.82.43.41.8-1.61.61.0
Intermittent access day 1 total infusions0.51.62.61.6-0.71.2-1.3
Intermittent access day 15 total infusions1.23.07.62.8-0.20.3-2.0
Intermittent access terminal intake (last 3 days)1.62.86.12.20.40.2-2.5
Intermittent access total infusions1.61.94.02.0-0.20.7-1.8
Intermittent access day 1 locomotion0.61.01.91.4-0.61.1-0.9
Intermittent access day 15 total locomotion0.93.37.92.30.5-0.1-2.8
Intermittent access total locomotion3.44.08.82.60.40.4-3.0
Intermittent access standard deviation0.10.82.21.50.20.1-0.9
Left kidney weight0.10.61.31.1-0.40.7-0.8
Right kidney weight0.10.40.91.0-0.10.4-0.7
Cocaine induced anxiety0.20.60.9-0.10.8-0.9-1.0
Post-drug Anxiety0.60.60.8-0.70.9-0.9-0.7
Baseline Anxiety0.40.61.3-0.6-0.50.71.1
Tail length0.10.81.6-1.30.3-0.31.1
Length with tail0.73.09.1-3.01.3-1.10.6
Length without tail0.52.57.7-2.81.3-0.60.5
Times rat made contact with spout0.30.30.6-0.70.0-0.10.8
Lifetime Intake1.11.32.81.7-0.60.9-1.1
Liver weight, left0.81.31.81.0-1.41.30.8
Liver weight, right2.74.87.61.5-2.62.81.7
Locomotor activity2.33.54.41.7-2.12.01.7
Locomotor testing distance2.15.27.21.8-2.52.72.0
Locomotor testing rearing1.14.25.81.7-2.12.41.9
Locomotion in novel chamber1.72.37.12.7-0.81.1-0.7
Locomotion in novel chamber post-restriction0.51.65.32.3-0.60.5-0.6
Fecal boli incidents, locomotor time 10.71.73.0-0.11.3-1.5-1.7
Change in fecal boli incidents, locomotor task1.92.03.30.2-1.81.41.6
Time >=10cm from walls, locomotor time 11.01.33.60.70.5-0.8-1.9
Bouts of movement, locomotor time 11.31.73.8-0.81.5-1.9-0.5
Total resting periods, locomotor time 11.51.73.5-0.51.6-1.9-0.8
Rest time, locomotor task time 10.50.82.71.6-0.60.3-0.1
Distance moved, locomotor task time 10.10.10.6-0.80.10.0-0.1
Vertical activity count, locomotor time 10.10.71.00.9-1.00.90.3
Time >=10cm from walls, locomotor time 20.61.62.40.11.3-1.6-1.5
Bouts of movement, locomotor time 20.10.50.9-0.61.0-0.6-0.3
Total resting periods, locomotor time 20.10.30.6-0.30.8-0.5-0.4
Rest time, locomotor task time 21.01.73.41.8-1.41.10.3
Distance moved, locomotor task time 20.60.81.4-1.20.8-1.1-0.0
Vertical activity count, locomotor time 20.20.51.30.1-0.70.41.1
Light reinforcement 10.00.10.20.40.5-0.1-0.0
Light reinforcement 21.02.35.11.41.3-0.7-2.3
Bone: marrow area0.30.81.10.9-0.71.0-0.9
Bone: maximum diameter1.12.14.0-0.61.6-1.3-2.0
Bone: maximum force2.54.96.9-2.62.4-1.7-2.1
Bone: maximum moment2.44.56.5-2.52.3-1.6-1.9
Mean time between licks in bursts0.31.63.6-0.7-1.01.21.9
Mean num. licks in bursts0.20.40.60.4-0.70.70.8
Cd content in liver0.91.01.91.20.4-0.7-1.4
Co content in liver2.32.74.21.2-1.71.52.0
Cu content in liver0.00.00.00.20.1-0.20.0
Fe content in liver0.10.10.3-0.50.0-0.3-0.2
K content in liver0.40.41.1-1.1-0.20.50.6
Mg content in liver0.91.02.00.2-1.01.40.9
Mn content in liver3.23.64.9-1.92.2-1.9-1.5
Na content in liver0.20.20.6-0.70.5-0.2-0.1
Rb content in liver2.52.94.01.5-2.01.81.4
Se content in liver0.91.12.30.41.1-0.9-1.5
Sr content in liver2.52.13.4-1.61.8-1.5-0.8
Zn content in liver0.30.30.6-0.80.8-0.10.1
Bone: minimum diameter0.30.61.00.7-0.20.8-1.0
Time in familiar zone, hab. session 10.10.20.40.3-0.30.60.1
Time in novel zone, hab. session 10.80.91.60.4-1.30.91.0
Total zone transitions, hab. session 10.20.30.6-0.80.5-0.6-0.3
Total locomotion distance, hab. session 10.20.30.50.6-0.60.7-0.2
Locomotion velocity, hab. session 10.00.00.10.1-0.10.3-0.2
Time in familiar zone, hab. session 21.41.63.5-0.3-1.41.01.9
Time in novel zone, hab. session 20.60.71.4-0.11.0-0.5-1.2
Total zone transitions, hab. session 20.40.51.9-1.40.20.0-0.1
Total locomotion distance, hab. session 20.40.51.1-0.2-0.81.10.3
Locomotion velocity, hab. session 20.30.30.80.1-0.70.9-0.0
Novel to familiar place preference ratio2.63.44.6-1.12.2-2.0-2.0
Novelty place preference2.02.63.6-0.71.9-1.7-1.8
Time in novel zone, NPP test1.61.92.8-0.71.7-1.4-1.6
Total zone transitions, NPP test1.01.53.4-1.81.0-1.1-0.6
Total locomotion distance, NPP test0.10.20.3-0.2-0.60.60.1
Locomotion velocity, NPP test0.10.10.2-0.2-0.40.3-0.0
Intraocular pressure0.91.51.91.41.0-1.1-1.3
Delta distance traveled before/after self-admin1.31.42.40.5-1.41.01.6
Delta ambulatory time before/after self-admin0.81.32.30.3-1.50.91.5
Parametrial fat weight1.12.66.22.5-1.11.4-1.1
Pavlov. Cond. lever latency0.20.30.60.8-0.70.20.2
Pavlov. Cond. magazine entry latency0.60.81.1-0.81.1-0.6-0.9
Pavlov. Cond. change in total contacts1.41.52.5-0.21.4-1.2-1.6
Pavlov. Cond. index score0.60.71.2-0.61.1-0.8-0.7
Pavlov. Cond. latency score0.30.30.6-0.60.8-0.4-0.5
Pavlov. Cond. lever contacts0.10.10.3-0.60.30.1-0.0
Pavlov. Cond. magazine entry number1.01.32.10.6-1.51.31.0
Pavlov. Cond. intertrial magazine entries0.40.41.21.10.5-0.3-0.4
Pavlov. Cond. lever-magazine prob. diff.0.81.01.5-0.81.2-0.9-0.9
Pavlov. Cond. response bias0.70.81.5-0.61.2-0.9-0.8
Pavlov. Cond. lever latency1.31.92.80.9-1.71.31.5
Pavlov. Cond. magazine entry latency3.04.26.5-2.62.3-2.0-1.1
Pavlov. Cond. change in total contacts2.25.48.1-1.42.8-2.5-2.4
Pavlov. Cond. index score3.04.86.9-1.92.6-2.2-1.9
Pavlov. Cond. latency score2.84.46.4-1.72.5-2.1-1.9
Pavlov. Cond. lever contacts1.31.92.7-0.91.7-1.4-1.4
Pavlov. Cond. magazine entry number6.18.010.73.1-3.32.91.9
Pavlov. Cond. intertrial magazine entries0.30.61.71.3-0.70.40.4
Pavlov. Cond. lever-magazine prob. diff.3.55.37.6-2.12.8-2.4-1.9
Pavlov. Cond. response bias2.63.54.8-1.82.2-1.9-1.6
Time in closed arm before self-admin0.50.82.10.50.6-0.7-1.4
Time in closed arm after self-admin0.81.01.40.7-1.21.20.7
Time in open arm before self-admin4.96.011.00.3-2.62.53.3
Time in open arm after self-admin0.20.20.4-0.5-0.00.10.7
Bone: periosteal estimation0.40.92.8-0.20.8-0.2-1.7
Bone: periosteal perimeter0.51.02.5-0.50.9-0.6-1.6
Bone: post-yield work1.73.07.4-0.81.5-1.2-2.7
Progressive ratio test 1 active lever presses0.10.20.50.6-0.2-0.1-0.7
Progressive ratio test 1 breakpoint0.10.30.70.5-0.1-0.2-0.8
Progressive ratio test 1 inactive lever presses0.20.41.30.10.6-0.2-1.1
Progressive ratio test 2 active lever presses1.31.83.91.80.3-0.1-2.0
Progressive ratio test 2 breakpoint1.41.83.81.80.3-0.0-2.0
Progressive ratio test 2 inactive lever presses1.34.210.83.30.10.6-2.4
Incentive Sensitization - Responses0.51.43.70.01.3-0.5-1.9
Incentive Sensitization - Breakpoint0.61.43.80.31.3-0.4-1.9
Sum of active levers in priming session hrs 5-65.65.28.4-0.62.6-2.9-2.3
Progressive ratio0.41.31.8-1.31.0-1.0-1.2
Food seeking constrained by brief footshock0.20.30.5-0.3-0.60.50.7
Seeking ratio, punishment vs. effort1.63.64.61.3-1.92.12.1
Retroperitoneal fat weight4.218.937.36.1-4.04.70.9
Reaction time number correct0.00.20.3-0.50.4-0.4-0.1
Reaction time mean minus median0.85.28.4-2.02.4-2.9-1.5
Reaction time mean minus median AUC0.42.34.5-1.41.5-2.1-0.7
Reaction time num false alarms1.93.34.80.6-2.01.92.2
Reaction time num false alarms AUC1.02.24.4-0.0-1.51.52.1
Reaction time trials correct on left0.00.20.3-0.50.4-0.4-0.1
Reaction time trials on left0.10.20.4-0.60.5-0.5-0.1
Reaction time mean0.30.71.5-0.00.9-1.2-0.7
Reaction time mean AUC0.30.71.50.00.9-1.2-0.8
Median of all reaction times0.10.20.30.50.3-0.5-0.5
Reaction time omissions0.71.12.3-1.20.9-1.5-0.2
Reaction time false alarm rate1.82.43.50.5-1.71.71.9
Reaction time premature initiation rate1.01.54.6-2.10.00.71.0
Reaction time premature initiations0.61.86.3-2.50.50.10.8
Std. dev. reaction times0.51.84.2-0.81.3-2.0-0.8
Reaction time trials completed0.10.20.4-0.60.5-0.5-0.1
Reaction time trials AUC0.00.10.2-0.50.3-0.20.1
Run reversals in cocaine runway, females1.51.72.6-0.9-1.11.61.5
Run reversals in cocaine runway, males0.20.20.40.4-0.70.30.4
Latency to leave start box in cocaine runway0.10.10.20.3-0.20.3-0.4
Latency to leave start box in cocaine runway, F0.00.00.10.10.2-0.0-0.3
Latency to leave start box in cocaine runway, M0.10.10.50.1-0.70.3-0.0
Std. dev. time between licks in bursts1.22.34.1-0.0-1.51.62.0
Total sessions with >9 infusions0.10.10.30.1-0.50.1-0.1
Short access day 1 total inactive lever presses0.91.93.61.9-1.11.70.2
Short access day 10 total inactive lever presses0.10.91.01.0-1.00.91.0
Short access day 1 total infusions0.61.32.11.5-1.31.20.1
Short access day 10 total infusions0.30.51.10.6-0.40.5-1.0
Short access total infusions0.50.71.30.6-1.21.0-0.1
Short access day 1 locomotion0.40.61.61.3-0.40.8-0.3
Short access day 10 total locomotion0.20.71.70.90.20.3-1.3
Short access total locomotion0.50.71.51.2-0.10.6-0.9
One hour access (0.3 mA shock)2.22.67.32.7-0.41.3-1.1
Compulsive drug intake1.21.84.5-1.5-0.30.52.1
One hour access (shock baseline)1.33.59.63.1-0.30.5-2.1
Social response proportion0.50.71.0-0.80.7-1.0-0.7
Social responses0.20.20.4-0.60.4-0.60.0
Social time0.10.20.4-0.60.1-0.40.6
Soleus weight2.57.313.83.7-2.82.61.1
Bone: stiffness2.34.24.4-1.92.0-2.1-2.1
Tibialis anterior weight5.819.938.2-6.24.7-4.2-1.4
Time to tail flick, vehicle, before self-admin0.50.61.6-0.70.6-0.3-1.3
Time to tail flick, vehicle, after self-admin0.40.82.6-1.6-0.10.20.6
Time to tail flick, test, before self-admin1.51.74.30.9-1.22.10.6
Time to tail flick, test, after self-admin0.60.71.0-0.40.9-1.0-0.9
Delta time to tail flick, vehicle, before/after SA0.50.61.2-1.0-0.20.21.1
Delta time to tail flick, test, before/after SA2.43.06.4-0.91.9-2.5-1.2
Tibia length2.97.911.5-1.53.4-3.0-3.0
Ambulatory time before self-admin0.92.84.2-0.82.1-1.7-1.8
Ambulatory time after self-admin0.30.40.80.50.6-0.5-0.9
Bone: tissue strength0.00.10.10.20.2-0.3-0.2
Total heroin consumption3.54.16.8-2.62.1-2.2-0.6
Bone: trabecular number1.12.12.6-1.31.6-1.2-1.6
Bone: trabecular spacing1.21.72.70.9-1.41.21.7
Bone: trabecular thickness0.10.10.50.7-0.10.3-0.1
Bone: trabecular tissue density1.52.77.52.7-1.60.70.2
Water consumed over 24 hours0.30.61.2-1.10.7-0.70.1
Number of responses in last shaping day0.30.40.90.0-0.50.60.9