Srsf3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA alternative polyA XM_063279228.1 0.06 0.06 6.2e-03 0.02 0.03 0.02 0.02 4.7e-02 1.4e-02 2.2e-02 2.1e-02
2 BLA alternative polyA NM_001047907.4 0.06 0.05 7.7e-03 0.02 0.02 0.01 0.01 3.8e-02 2.8e-02 7.6e-02 7.6e-02
3 RMTg alternative polyA XM_063279228.1 0.23 0.25 2.4e-03 0.04 0.1 0.11 0.11 4.0e-02 1.3e-03 6.4e-04 9.3e-04
4 RMTg alternative polyA NM_001047907.4 0.32 0.27 7.1e-04 0.04 0.1 0.13 0.12 4.2e-02 1.2e-03 2.1e-04 3.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.60.8-0.90.9-0.0-0.8
Area under the delay curve0.81.01.31.1-1.11.1-0.4
BMI with tail1.55.17.82.8-2.82.1-0.8
BMI without tail1.33.96.82.6-2.61.5-0.0
Body weight4.519.626.95.2-5.24.4-2.2
Weight adjusted by age0.50.71.30.8-0.81.1-0.3
Bone surface0.10.10.30.0-0.00.5-0.5
Bone volume0.20.30.70.2-0.20.7-0.9
Breakpoint value in progressive ratio session0.30.30.9-0.20.2-0.60.9
Number of licking bursts0.91.42.8-0.70.7-1.41.7
Context. condit. distance diff. score0.50.61.3-0.60.6-0.71.1
Locomotion velocity, session 10.60.60.9-0.90.90.2-1.0
Locomotion distance, session 12.02.54.4-2.12.1-1.2-0.2
Locomotion velocity, session 20.50.61.0-0.60.6-0.91.0
Locomotion distance, session 20.60.91.3-1.11.2-0.3-0.9
Locomotion velocity, session 30.20.30.50.7-0.70.4-0.2
Locomotion distance, session 30.10.10.2-0.40.4-0.5-0.1
Stereotopy head waving bouts, day 31.41.72.51.6-1.61.2-0.6
Stereotopy head waving duration, day 30.20.20.40.4-0.40.6-0.4
Locomotion velocity, session 71.71.86.1-0.20.21.1-2.5
Locomotion distance, session 71.31.64.2-1.01.00.4-2.0
Stereotopy head waving bouts, day 70.70.81.41.2-1.20.40.2
Stereotopy head waving duration, day 70.70.81.61.2-1.20.50.1
Locomotion velocity, session 80.10.10.5-0.00.1-0.20.7
Locomotion distance, session 80.71.11.3-1.11.2-1.00.8
Degree of sensitization distance0.40.41.2-0.10.10.8-1.1
Degree of sensitization stereotypy0.20.30.80.0-0.0-0.50.9
Conditioned locomotion1.41.62.91.7-1.70.80.1
Cocaine response after cond. corrected0.50.60.90.9-0.90.30.7
Cocaine response after cond. not corrected0.60.71.01.0-0.90.21.0
Cocaine response before conditioning0.00.00.10.0-0.00.1-0.4
Saline control response0.60.81.10.7-0.71.0-1.0
Bone: connectivity density0.30.50.8-0.80.80.2-0.9
Bone: cortical apparent density0.00.00.0-0.10.1-0.20.1
Bone: cortical area0.20.30.50.5-0.50.7-0.5
Bone: cortical porosity0.00.00.0-0.10.10.2-0.2
Bone: cortical porosity0.30.30.8-0.10.10.6-0.9
Bone: cortical thickness0.10.20.4-0.60.6-0.30.1
Bone: cortical thickness0.30.41.40.1-0.10.4-1.2
Bone: cortical tissue density0.00.00.0-0.0-0.0-0.20.2
Condit. Reinf. active minus inactive responses0.50.61.0-1.01.00.0-0.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.2-0.20.5
Condit. Reinf. active responses0.30.40.8-0.50.50.5-0.9
Condit. Reinf. inactive responses0.40.51.1-0.60.60.3-1.0
Incentive salience index mean0.20.20.4-0.60.60.1-0.3
Condit. Reinf. lever presses0.00.00.1-0.10.10.3-0.2
Condit. Reinf. active minus inactive responses0.40.50.8-0.90.9-0.60.0
Condit. Reinf. active-inactive response ratio0.20.30.3-0.60.5-0.50.5
Condit. Reinf. active responses0.30.50.7-0.90.9-0.5-0.3
Condit. Reinf. inactive responses0.30.41.30.3-0.30.5-1.2
Condit. Reinf. lever presses2.33.25.2-2.32.3-1.6-0.1
Condit. Reinf. lever reinforcers received0.71.01.6-1.31.3-0.7-0.3
Conditioned reinforcement - actives1.11.94.00.8-0.81.6-2.0
Conditioned reinforcement - inactives0.10.20.8-0.20.20.1-0.9
Conditioned locomotion3.24.28.11.3-1.32.3-2.8
Patch foraging indifference point 0 sec0.20.40.60.8-0.80.4-0.7
Patch foraging indifference point AUC0.10.20.4-0.50.5-0.60.1
Delay disc. indifference point, 0s delay0.10.10.30.4-0.40.5-0.0
Delay disc. indifference point, 16s delay0.50.61.10.7-0.61.0-0.6
Delay disc. indifference point, 2s delay0.20.20.6-0.30.30.4-0.8
Delay disc. indifference point, 24s delay2.02.23.11.6-1.61.7-0.8
Delay disc. indifference point, 4s delay0.90.91.51.2-1.20.50.6
Delay disc. indifference point, 8s delay1.92.22.61.5-1.51.6-1.4
Indifference point function ln k0.00.10.1-0.40.4-0.1-0.0
Indifference point function log k0.00.10.1-0.40.4-0.1-0.0
Patch foraging total patch changes 0 sec0.20.40.50.7-0.70.4-0.7
Patch foraging total patch changes 12 sec0.10.20.6-0.00.0-0.80.4
Patch foraging total patch changes 18 sec0.30.51.01.0-1.00.2-0.1
Patch foraging total patch changes 24 sec0.30.40.8-0.60.6-0.90.6
Patch foraging total patch changes 6 sec0.10.10.10.3-0.3-0.30.3
Patch foraging time to switch 0 sec0.51.01.71.3-1.30.80.1
Patch foraging water rate 0 sec0.10.10.2-0.40.4-0.2-0.4
Patch foraging water rate 12 sec0.10.20.4-0.30.3-0.60.5
Patch foraging water rate 18 sec0.10.20.3-0.60.5-0.40.0
Patch foraging water rate 24 sec0.70.91.6-0.50.5-1.21.3
Patch foraging water rate 6 sec0.30.40.7-0.40.4-0.80.8
Seeking ratio, delayed vs. immediate footshock1.62.06.40.2-0.2-1.22.5
Distance traveled before self-admin0.60.81.11.0-1.1-0.30.8
Distance traveled after self-admin0.70.92.60.4-0.4-0.81.6
Extensor digitorum longus weight0.10.61.0-1.01.0-0.60.0
Bone: elastic displacement0.00.00.0-0.10.10.2-0.1
Bone: elastic work0.10.10.30.2-0.20.6-0.3
Bone: endosteal estimation2.45.27.22.7-2.72.2-1.3
Bone: endosteal perimeter1.12.33.92.0-2.01.1-0.1
Epididymis fat weight0.41.42.51.6-1.60.60.5
Delta time in closed arm before/after self-admin1.61.52.21.5-1.51.2-0.5
Delta time in open arm before/after self-admin0.40.40.6-0.80.8-0.4-0.4
Diff in mean of infusions in LGA sessions1.01.22.4-0.80.8-1.11.6
Delay discount exponential model param0.70.81.1-1.01.0-1.00.4
Extinction: sum of active levers before priming0.10.10.2-0.30.3-0.50.2
Active lever presses in extinction session 60.40.41.10.1-0.10.8-1.0
Bone: final force2.94.66.52.6-2.52.1-0.9
Bone: final moment2.53.95.62.4-2.32.0-0.9
Food consumed during 24 hour testing period0.30.40.70.8-0.80.40.4
Glucose0.00.00.0-0.10.20.10.1
Heart weight1.01.52.7-1.61.6-0.70.5
Delay discount hyperbolic model param0.50.50.7-0.80.8-0.80.4
Intermittent access intake day 1-15 change0.30.60.90.9-0.90.6-0.3
Intermittent access intake escalation0.50.91.11.0-1.00.9-0.8
Intermittent access intake escalation 20.30.30.70.3-0.30.7-0.8
Intermitt. access day 1 inactive lever presses0.51.93.2-1.31.2-1.81.1
Intermitt. access day 15 inactive lever presses0.10.30.50.7-0.70.2-0.1
Intermitt. access escalation Index1.31.83.7-0.80.8-1.61.9
Intermittent access day 1 total infusions0.50.81.4-0.80.90.4-1.2
Intermittent access day 15 total infusions0.30.51.20.1-0.10.9-1.1
Intermittent access terminal intake (last 3 days)0.50.71.60.2-0.21.0-1.3
Intermittent access total infusions0.70.82.4-0.20.30.8-1.5
Intermittent access day 1 locomotion0.20.20.40.4-0.40.5-0.6
Intermittent access day 15 total locomotion2.64.76.12.4-2.52.1-1.5
Intermittent access total locomotion1.51.72.31.2-1.21.3-1.5
Intermittent access standard deviation0.71.42.01.4-1.41.1-0.6
Left kidney weight2.612.016.14.0-4.03.3-2.1
Right kidney weight4.721.327.75.3-5.24.5-3.2
Cocaine induced anxiety0.10.10.2-0.40.4-0.40.2
Post-drug Anxiety0.10.20.3-0.50.5-0.30.2
Baseline Anxiety0.10.10.30.0-0.0-0.10.6
Tail length0.72.94.22.0-2.01.6-0.8
Length with tail2.08.610.53.2-3.23.1-2.0
Length without tail2.99.211.13.2-3.23.3-2.3
Times rat made contact with spout1.82.03.3-1.81.8-1.1-0.5
Lifetime Intake0.91.13.10.1-0.11.1-1.8
Liver weight, left1.32.13.31.8-1.81.2-0.6
Liver weight, right1.72.95.22.3-2.31.10.2
Locomotor activity0.40.71.90.4-0.4-0.71.4
Locomotor testing distance0.30.61.60.1-0.1-0.91.3
Locomotor testing rearing0.40.81.51.2-1.20.30.3
Locomotion in novel chamber0.30.40.4-0.60.7-0.50.6
Locomotion in novel chamber post-restriction1.32.12.81.7-1.71.3-1.0
Fecal boli incidents, locomotor time 10.71.02.80.2-0.11.0-1.7
Change in fecal boli incidents, locomotor task0.90.92.50.7-0.7-0.61.6
Time >=10cm from walls, locomotor time 10.90.91.61.3-1.30.20.7
Bouts of movement, locomotor time 10.10.20.2-0.40.4-0.5-0.3
Total resting periods, locomotor time 10.10.10.3-0.10.1-0.2-0.6
Rest time, locomotor task time 10.10.10.10.3-0.30.4-0.3
Distance moved, locomotor task time 10.10.10.10.4-0.40.20.2
Vertical activity count, locomotor time 10.20.40.70.8-0.80.30.5
Time >=10cm from walls, locomotor time 22.94.35.52.4-2.32.2-1.2
Bouts of movement, locomotor time 20.00.00.10.3-0.3-0.20.1
Total resting periods, locomotor time 20.10.10.3-0.10.1-0.50.3
Rest time, locomotor task time 20.70.92.30.0-0.0-1.21.5
Distance moved, locomotor task time 22.52.94.11.6-1.62.0-1.6
Vertical activity count, locomotor time 21.41.93.31.0-1.11.8-1.4
Light reinforcement 10.81.93.31.8-1.80.40.8
Light reinforcement 21.32.03.51.9-1.90.90.6
Bone: marrow area2.65.67.62.8-2.72.3-1.4
Bone: maximum diameter0.30.60.70.8-0.80.8-0.6
Bone: maximum force1.42.43.21.5-1.51.8-1.3
Bone: maximum moment1.22.12.81.3-1.31.7-1.4
Mean time between licks in bursts0.51.31.7-1.11.1-1.31.1
Mean num. licks in bursts0.60.92.8-0.50.50.4-1.7
Cd content in liver0.40.51.30.00.00.8-1.2
Co content in liver1.51.72.21.5-1.51.4-0.9
Cu content in liver2.02.43.9-2.02.0-1.30.3
Fe content in liver1.51.82.41.5-1.51.4-0.9
K content in liver0.60.50.8-0.90.9-0.70.2
Mg content in liver1.21.21.5-1.11.1-1.21.0
Mn content in liver0.10.10.20.0-0.1-0.30.4
Na content in liver0.40.40.7-0.40.4-0.90.8
Rb content in liver0.30.30.9-0.00.00.5-1.0
Se content in liver1.51.81.9-1.41.4-1.31.2
Sr content in liver0.30.30.7-0.10.10.5-0.8
Zn content in liver0.40.50.6-0.80.8-0.60.7
Bone: minimum diameter0.91.62.51.6-1.61.2-0.1
Time in familiar zone, hab. session 10.10.10.2-0.00.00.3-0.4
Time in novel zone, hab. session 10.10.10.30.5-0.50.10.1
Total zone transitions, hab. session 12.02.84.3-2.12.1-1.60.4
Total locomotion distance, hab. session 11.52.12.9-1.71.7-1.50.6
Locomotion velocity, hab. session 11.41.92.8-1.71.7-1.40.5
Time in familiar zone, hab. session 21.61.72.7-1.11.1-1.71.3
Time in novel zone, hab. session 24.24.28.31.3-1.32.3-2.9
Total zone transitions, hab. session 20.50.61.2-0.70.7-1.10.6
Total locomotion distance, hab. session 22.22.84.1-1.71.7-2.01.1
Locomotion velocity, hab. session 22.63.54.9-2.01.9-2.21.2
Novel to familiar place preference ratio0.20.30.40.5-0.50.6-0.3
Novelty place preference0.20.20.30.5-0.40.6-0.3
Time in novel zone, NPP test0.30.30.50.5-0.50.7-0.4
Total zone transitions, NPP test0.91.32.2-1.51.5-0.9-0.2
Total locomotion distance, NPP test0.81.11.9-1.41.4-0.6-0.7
Locomotion velocity, NPP test1.31.83.0-1.71.7-1.1-0.1
Intraocular pressure1.52.22.51.4-1.41.6-1.5
Delta distance traveled before/after self-admin0.30.30.6-0.80.80.1-0.2
Delta ambulatory time before/after self-admin0.20.30.6-0.80.7-0.10.1
Parametrial fat weight2.35.59.53.1-3.11.6-0.7
Pavlov. Cond. lever latency0.30.40.60.7-0.7-0.10.6
Pavlov. Cond. magazine entry latency0.30.40.7-0.60.60.1-0.8
Pavlov. Cond. change in total contacts0.70.71.00.8-0.81.0-0.8
Pavlov. Cond. index score0.20.30.8-0.30.30.5-0.9
Pavlov. Cond. latency score0.20.20.6-0.20.20.4-0.7
Pavlov. Cond. lever contacts0.20.20.5-0.30.40.4-0.7
Pavlov. Cond. magazine entry number0.40.50.90.9-1.00.40.3
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.20.20.6-0.5
Pavlov. Cond. lever-magazine prob. diff.0.30.41.1-0.30.30.5-1.0
Pavlov. Cond. response bias0.40.50.9-0.90.9-0.1-0.5
Pavlov. Cond. lever latency1.11.42.31.5-1.50.80.8
Pavlov. Cond. magazine entry latency1.21.43.70.5-0.51.1-1.9
Pavlov. Cond. change in total contacts0.50.91.2-1.11.1-0.4-1.0
Pavlov. Cond. index score0.50.72.1-0.60.60.1-1.5
Pavlov. Cond. latency score0.30.41.2-0.50.50.0-1.1
Pavlov. Cond. lever contacts0.91.21.8-1.31.4-0.7-1.0
Pavlov. Cond. magazine entry number0.50.72.1-0.20.2-0.61.5
Pavlov. Cond. intertrial magazine entries0.91.42.1-0.90.9-1.41.4
Pavlov. Cond. lever-magazine prob. diff.0.50.62.0-0.40.50.2-1.4
Pavlov. Cond. response bias0.81.13.0-0.80.90.1-1.7
Time in closed arm before self-admin0.30.40.7-0.90.8-0.40.4
Time in closed arm after self-admin0.10.10.4-0.10.10.6-0.4
Time in open arm before self-admin0.10.10.1-0.30.3-0.1-0.3
Time in open arm after self-admin0.40.50.7-0.80.8-0.7-0.1
Bone: periosteal estimation1.42.93.92.0-1.91.7-1.0
Bone: periosteal perimeter0.40.71.21.1-1.10.50.2
Bone: post-yield work1.42.14.60.6-0.61.8-2.2
Progressive ratio test 1 active lever presses0.10.10.2-0.00.00.3-0.5
Progressive ratio test 1 breakpoint0.00.10.2-0.20.20.1-0.4
Progressive ratio test 1 inactive lever presses0.50.71.20.8-0.80.8-1.1
Progressive ratio test 2 active lever presses0.40.41.40.1-0.10.6-1.2
Progressive ratio test 2 breakpoint0.40.41.40.0-0.00.6-1.2
Progressive ratio test 2 inactive lever presses0.10.20.6-0.20.20.1-0.8
Incentive Sensitization - Responses0.40.60.8-0.90.9-0.80.2
Incentive Sensitization - Breakpoint0.20.30.4-0.60.6-0.60.0
Sum of active levers in priming session hrs 5-60.10.10.2-0.50.4-0.10.0
Progressive ratio1.62.54.32.1-2.11.2-0.3
Food seeking constrained by brief footshock0.10.10.2-0.20.30.5-0.4
Seeking ratio, punishment vs. effort1.01.42.7-1.61.7-0.60.2
Retroperitoneal fat weight0.72.85.22.3-2.31.00.2
Reaction time number correct0.30.50.91.0-1.00.2-0.2
Reaction time mean minus median0.10.30.40.5-0.50.5-0.6
Reaction time mean minus median AUC0.20.40.70.5-0.50.8-0.7
Reaction time num false alarms0.30.40.9-0.50.5-0.90.5
Reaction time num false alarms AUC0.91.52.3-1.11.1-1.51.1
Reaction time trials correct on left0.30.50.91.0-1.00.2-0.2
Reaction time trials on left0.20.50.90.9-1.00.2-0.1
Reaction time mean0.50.81.60.6-0.61.0-1.3
Reaction time mean AUC0.81.32.00.9-0.91.3-1.4
Median of all reaction times0.60.81.40.6-0.61.0-1.2
Reaction time omissions0.40.61.70.3-0.3-0.61.3
Reaction time false alarm rate1.31.82.4-1.61.5-1.40.9
Reaction time premature initiation rate0.20.30.3-0.50.5-0.50.6
Reaction time premature initiations0.10.10.30.2-0.2-0.30.5
Std. dev. reaction times0.10.20.30.2-0.20.5-0.5
Reaction time trials completed0.20.50.90.9-1.00.2-0.1
Reaction time trials AUC0.20.50.90.9-1.00.2-0.0
Run reversals in cocaine runway, females1.91.95.30.4-0.41.4-2.3
Run reversals in cocaine runway, males0.60.61.30.5-0.50.8-1.1
Latency to leave start box in cocaine runway0.60.71.0-1.01.0-0.60.7
Latency to leave start box in cocaine runway, F0.40.40.6-0.80.8-0.40.5
Latency to leave start box in cocaine runway, M0.10.10.1-0.30.2-0.20.3
Std. dev. time between licks in bursts0.91.23.60.6-0.6-0.61.9
Total sessions with >9 infusions0.10.20.6-0.10.10.3-0.8
Short access day 1 total inactive lever presses0.71.02.50.2-0.31.2-1.6
Short access day 10 total inactive lever presses1.12.65.4-0.70.6-2.12.3
Short access day 1 total infusions0.50.61.7-0.60.60.3-1.3
Short access day 10 total infusions0.00.10.1-0.20.2-0.1-0.3
Short access total infusions0.70.92.8-0.00.00.9-1.7
Short access day 1 locomotion0.20.20.3-0.30.4-0.60.5
Short access day 10 total locomotion0.40.71.4-0.50.4-1.21.0
Short access total locomotion0.10.10.3-0.10.1-0.50.5
One hour access (0.3 mA shock)1.41.62.7-1.61.7-0.8-0.4
Compulsive drug intake2.02.33.2-1.81.8-1.41.0
One hour access (shock baseline)0.30.51.50.1-0.10.7-1.2
Social response proportion0.00.00.1-0.00.1-0.00.4
Social responses1.01.33.7-0.20.2-1.11.9
Social time0.81.12.4-0.50.4-1.31.6
Soleus weight0.30.81.31.0-1.00.41.1
Bone: stiffness1.11.81.91.3-1.31.4-1.3
Tibialis anterior weight0.51.82.3-1.51.5-1.40.9
Time to tail flick, vehicle, before self-admin1.61.62.91.7-1.70.10.9
Time to tail flick, vehicle, after self-admin0.40.50.8-0.90.9-0.50.4
Time to tail flick, test, before self-admin1.61.63.9-0.50.5-1.52.0
Time to tail flick, test, after self-admin0.20.20.7-0.00.00.3-0.8
Delta time to tail flick, vehicle, before/after SA1.71.62.9-1.71.7-0.1-0.9
Delta time to tail flick, test, before/after SA1.71.83.40.9-0.91.4-1.8
Tibia length1.95.37.32.7-2.72.2-1.4
Ambulatory time before self-admin0.30.50.90.5-0.5-0.70.9
Ambulatory time after self-admin0.70.92.4-0.20.1-1.01.6
Bone: tissue strength0.20.20.50.1-0.10.6-0.7
Total heroin consumption1.21.42.2-0.90.9-1.31.5
Bone: trabecular number0.60.91.4-1.21.2-0.1-1.0
Bone: trabecular spacing1.01.32.41.5-1.50.60.3
Bone: trabecular thickness1.21.53.00.7-0.71.5-1.7
Bone: trabecular tissue density0.50.72.20.1-0.10.8-1.5
Water consumed over 24 hours1.31.82.7-1.11.1-1.41.6
Number of responses in last shaping day0.30.30.7-0.80.80.0-0.3