Spata31f1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Spata31f1 0.07 0.05 4.7e-07 0.06 0.05 0.06 0.06 1.1e-07 2.9e-06 1.0e-06 4.4e-07
2 Adipose gene expression Spata31f1 0.17 0.09 0.0e+00 0.08 0.13 0.13 0.14 3.0e-09 4.4e-14 2.7e-14 3.0e-15
3 Brain gene expression Spata31f1 0.09 0.06 1.1e-05 0.06 0.06 0.06 0.06 3.8e-06 8.0e-06 4.6e-06 1.7e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.61.31.2-0.60.4
Area under the delay curve0.50.50.6-0.70.7-0.8
BMI with tail0.72.25.22.3-0.90.8
BMI without tail2.04.111.33.40.8-0.7
Body weight1.14.412.63.60.6-0.5
Weight adjusted by age1.11.22.10.21.5-1.2
Bone surface0.30.61.11.10.5-0.5
Bone volume0.20.31.01.0-0.0-0.1
Breakpoint value in progressive ratio session1.92.13.2-0.51.7-1.8
Number of licking bursts2.12.57.22.7-0.10.5
Context. condit. distance diff. score0.10.10.1-0.3-0.30.4
Locomotion velocity, session 17.68.211.71.13.4-3.4
Locomotion distance, session 12.12.73.70.91.9-1.9
Locomotion velocity, session 20.81.02.31.5-0.50.6
Locomotion distance, session 22.02.84.32.11.4-1.4
Locomotion velocity, session 31.51.82.70.41.6-1.6
Locomotion distance, session 31.82.02.91.71.2-1.2
Stereotopy head waving bouts, day 31.41.62.5-0.11.6-1.6
Stereotopy head waving duration, day 30.50.60.8-0.50.9-0.9
Locomotion velocity, session 70.00.00.1-0.4-0.00.1
Locomotion distance, session 70.20.30.30.60.5-0.5
Stereotopy head waving bouts, day 71.21.33.01.70.7-0.7
Stereotopy head waving duration, day 70.50.71.01.00.7-0.7
Locomotion velocity, session 81.11.31.90.61.4-1.3
Locomotion distance, session 80.91.31.60.91.3-1.2
Degree of sensitization distance0.60.61.2-1.1-0.50.5
Degree of sensitization stereotypy0.50.61.61.30.2-0.3
Conditioned locomotion0.91.01.60.21.2-1.3
Cocaine response after cond. corrected2.12.43.4-1.01.8-1.7
Cocaine response after cond. not corrected2.62.84.2-0.82.1-1.9
Cocaine response before conditioning0.30.41.01.0-0.20.1
Saline control response1.72.32.51.41.6-1.5
Bone: connectivity density0.30.40.60.6-0.80.6
Bone: cortical apparent density1.82.33.4-0.4-1.91.9
Bone: cortical area0.91.32.81.7-0.70.8
Bone: cortical porosity0.20.20.5-0.7-0.20.1
Bone: cortical porosity0.00.00.0-0.0-0.1-0.0
Bone: cortical thickness1.01.62.20.7-1.51.5
Bone: cortical thickness0.50.60.8-0.5-0.90.8
Bone: cortical tissue density1.62.13.0-0.4-1.71.7
Condit. Reinf. active minus inactive responses0.20.20.50.7-0.20.4
Condit. Reinf. active-inactive response ratio0.50.50.9-1.0-0.50.6
Condit. Reinf. active responses1.01.23.31.8-0.30.5
Condit. Reinf. inactive responses1.21.53.51.9-0.50.8
Incentive salience index mean1.72.16.02.40.4-0.2
Condit. Reinf. lever presses5.26.916.54.11.6-1.4
Condit. Reinf. active minus inactive responses0.20.30.80.9-0.10.1
Condit. Reinf. active-inactive response ratio0.10.10.20.1-0.30.5
Condit. Reinf. active responses0.81.03.11.80.0-0.2
Condit. Reinf. inactive responses1.21.53.81.9-0.80.4
Condit. Reinf. lever presses1.11.51.81.3-1.31.1
Condit. Reinf. lever reinforcers received0.91.23.61.90.0-0.1
Conditioned reinforcement - actives0.30.30.70.9-0.10.2
Conditioned reinforcement - inactives0.20.20.50.70.3-0.3
Conditioned locomotion0.20.20.60.80.2-0.2
Patch foraging indifference point 0 sec3.55.78.30.82.9-2.8
Patch foraging indifference point AUC2.93.39.03.00.7-0.7
Delay disc. indifference point, 0s delay0.60.61.0-1.00.6-0.7
Delay disc. indifference point, 16s delay1.51.52.2-0.51.4-1.5
Delay disc. indifference point, 2s delay0.20.30.40.1-0.70.6
Delay disc. indifference point, 24s delay0.10.10.3-0.5-0.00.0
Delay disc. indifference point, 4s delay0.10.10.3-0.6-0.0-0.1
Delay disc. indifference point, 8s delay0.00.00.0-0.20.1-0.2
Indifference point function ln k0.91.23.5-1.9-0.30.1
Indifference point function log k0.91.23.5-1.9-0.30.1
Patch foraging total patch changes 0 sec3.35.37.31.22.7-2.7
Patch foraging total patch changes 12 sec0.70.92.61.60.3-0.3
Patch foraging total patch changes 18 sec0.70.91.31.01.1-0.8
Patch foraging total patch changes 24 sec1.72.12.81.71.4-1.3
Patch foraging total patch changes 6 sec3.14.64.82.22.2-2.0
Patch foraging time to switch 0 sec1.52.33.6-1.9-1.31.4
Patch foraging water rate 0 sec1.62.62.81.61.7-1.6
Patch foraging water rate 12 sec0.20.30.60.10.6-0.8
Patch foraging water rate 18 sec0.20.30.60.5-0.80.4
Patch foraging water rate 24 sec0.91.32.1-0.4-1.51.3
Patch foraging water rate 6 sec0.40.61.71.30.1-0.4
Seeking ratio, delayed vs. immediate footshock1.31.44.22.0-0.20.3
Distance traveled before self-admin3.84.18.93.01.4-1.2
Distance traveled after self-admin0.80.92.21.5-0.50.6
Extensor digitorum longus weight1.87.019.84.50.8-0.7
Bone: elastic displacement3.53.98.0-2.8-1.31.4
Bone: elastic work4.86.27.5-2.1-2.62.7
Bone: endosteal estimation1.02.13.11.81.4-1.2
Bone: endosteal perimeter1.42.83.11.71.8-1.5
Epididymis fat weight0.40.81.61.30.8-0.5
Delta time in closed arm before/after self-admin1.11.11.41.0-1.01.2
Delta time in open arm before/after self-admin0.40.30.6-0.20.6-0.8
Diff in mean of infusions in LGA sessions0.10.10.3-0.5-0.10.3
Delay discount exponential model param0.50.50.60.6-0.60.8
Extinction: sum of active levers before priming0.50.51.6-1.3-0.2-0.1
Active lever presses in extinction session 60.50.51.2-1.10.4-0.4
Bone: final force0.40.61.81.40.00.0
Bone: final moment0.30.51.21.1-0.30.3
Food consumed during 24 hour testing period0.81.01.71.30.9-0.7
Glucose0.50.81.91.40.5-0.4
Heart weight0.50.70.90.90.8-0.7
Delay discount hyperbolic model param0.40.40.50.6-0.60.7
Intermittent access intake day 1-15 change1.21.21.70.6-1.21.3
Intermittent access intake escalation0.90.91.10.8-1.01.1
Intermittent access intake escalation 22.32.33.31.0-1.81.6
Intermitt. access day 1 inactive lever presses0.30.40.90.90.4-0.2
Intermitt. access day 15 inactive lever presses0.30.40.50.50.7-0.7
Intermitt. access escalation Index1.21.01.41.20.8-1.0
Intermittent access day 1 total infusions0.91.11.7-0.51.1-1.3
Intermittent access day 15 total infusions0.20.20.50.70.2-0.1
Intermittent access terminal intake (last 3 days)0.60.61.71.30.3-0.3
Intermittent access total infusions0.60.61.21.10.6-0.6
Intermittent access day 1 locomotion1.01.11.3-1.10.9-1.0
Intermittent access day 15 total locomotion0.30.30.8-0.90.3-0.3
Intermittent access total locomotion0.30.30.8-0.9-0.30.2
Intermittent access standard deviation0.40.40.70.8-0.50.5
Left kidney weight0.72.02.31.51.4-1.3
Right kidney weight0.30.81.20.51.1-1.0
Cocaine induced anxiety0.10.10.4-0.6-0.1-0.1
Post-drug Anxiety0.30.41.01.00.2-0.3
Baseline Anxiety0.30.30.40.6-0.40.6
Tail length1.23.57.62.81.2-1.2
Length with tail0.72.63.11.81.6-1.4
Length without tail0.20.30.8-0.90.4-0.3
Times rat made contact with spout0.40.50.60.7-0.50.8
Lifetime Intake1.82.02.21.51.4-1.4
Liver weight, left0.30.51.41.20.2-0.1
Liver weight, right0.10.10.20.10.2-0.5
Locomotor activity0.00.00.10.3-0.2-0.1
Locomotor testing distance0.40.71.40.30.8-1.2
Locomotor testing rearing0.81.32.71.60.6-0.9
Locomotion in novel chamber0.40.50.8-0.4-0.80.9
Locomotion in novel chamber post-restriction1.61.92.50.9-1.51.6
Fecal boli incidents, locomotor time 10.80.92.1-1.5-0.30.6
Change in fecal boli incidents, locomotor task1.61.51.61.31.2-1.2
Time >=10cm from walls, locomotor time 10.90.91.60.31.3-1.0
Bouts of movement, locomotor time 10.80.92.0-1.4-0.70.3
Total resting periods, locomotor time 11.61.83.2-1.8-1.20.8
Rest time, locomotor task time 14.65.16.1-1.8-2.52.5
Distance moved, locomotor task time 13.53.83.92.01.9-1.9
Vertical activity count, locomotor time 14.14.35.41.82.1-2.3
Time >=10cm from walls, locomotor time 20.10.10.20.30.4-0.3
Bouts of movement, locomotor time 20.20.30.70.9-0.3-0.1
Total resting periods, locomotor time 20.10.10.20.5-0.40.1
Rest time, locomotor task time 20.70.91.5-1.2-0.80.6
Distance moved, locomotor task time 20.30.40.50.7-0.50.6
Vertical activity count, locomotor time 20.40.50.90.90.6-0.5
Light reinforcement 14.27.710.02.12.9-3.2
Light reinforcement 25.87.811.71.43.1-3.4
Bone: marrow area0.81.83.21.81.1-1.0
Bone: maximum diameter0.81.54.52.10.10.1
Bone: maximum force1.01.74.92.2-0.10.2
Bone: maximum moment0.71.33.41.9-0.40.5
Mean time between licks in bursts0.10.20.5-0.7-0.10.3
Mean num. licks in bursts1.11.33.6-1.9-0.50.2
Cd content in liver0.60.70.91.0-0.80.8
Co content in liver0.60.71.1-1.00.7-0.7
Cu content in liver0.91.11.2-1.1-1.01.1
Fe content in liver2.42.94.10.72.0-2.0
K content in liver0.60.60.7-0.50.9-0.8
Mg content in liver0.60.61.5-1.20.4-0.3
Mn content in liver0.40.50.7-0.1-0.80.8
Na content in liver0.40.41.1-1.1-0.20.1
Rb content in liver1.51.85.2-2.30.3-0.3
Se content in liver0.81.02.01.4-0.70.8
Sr content in liver0.10.10.30.5-0.10.1
Zn content in liver0.50.60.9-0.2-0.90.9
Bone: minimum diameter0.10.20.2-0.4-0.40.5
Time in familiar zone, hab. session 14.94.66.5-1.0-2.62.5
Time in novel zone, hab. session 13.73.65.1-0.82.3-2.3
Total zone transitions, hab. session 10.00.00.00.1-0.10.1
Total locomotion distance, hab. session 11.01.42.00.4-1.41.4
Locomotion velocity, hab. session 11.01.41.71.3-1.11.1
Time in familiar zone, hab. session 22.32.43.1-1.1-1.81.7
Time in novel zone, hab. session 22.22.23.1-0.81.7-1.8
Total zone transitions, hab. session 20.91.21.41.01.2-1.1
Total locomotion distance, hab. session 20.30.41.21.10.1-0.0
Locomotion velocity, hab. session 20.40.51.51.20.00.1
Novel to familiar place preference ratio1.92.02.7-1.61.3-1.3
Novelty place preference2.02.14.0-2.01.0-1.1
Time in novel zone, NPP test2.42.54.9-2.21.1-1.2
Total zone transitions, NPP test1.31.82.01.31.4-1.4
Total locomotion distance, NPP test1.62.23.21.81.3-1.3
Locomotion velocity, NPP test1.42.04.12.01.0-1.0
Intraocular pressure1.52.14.12.01.0-1.1
Delta distance traveled before/after self-admin0.30.30.4-0.4-0.60.7
Delta ambulatory time before/after self-admin0.70.81.0-1.0-0.80.8
Parametrial fat weight0.20.40.50.60.7-0.6
Pavlov. Cond. lever latency3.34.111.0-3.3-0.80.8
Pavlov. Cond. magazine entry latency0.10.10.40.6-0.10.2
Pavlov. Cond. change in total contacts1.31.43.51.90.6-0.5
Pavlov. Cond. index score1.11.44.22.10.1-0.0
Pavlov. Cond. latency score1.11.44.02.00.2-0.1
Pavlov. Cond. lever contacts2.12.46.82.60.5-0.5
Pavlov. Cond. magazine entry number0.20.30.9-0.90.1-0.2
Pavlov. Cond. intertrial magazine entries0.10.10.20.5-0.20.2
Pavlov. Cond. lever-magazine prob. diff.1.01.23.41.8-0.20.3
Pavlov. Cond. response bias1.11.44.02.00.2-0.2
Pavlov. Cond. lever latency1.41.92.3-1.51.5-1.2
Pavlov. Cond. magazine entry latency0.40.40.5-0.6-0.70.6
Pavlov. Cond. change in total contacts2.02.84.70.4-2.21.9
Pavlov. Cond. index score1.01.32.30.1-1.51.3
Pavlov. Cond. latency score1.31.62.60.2-1.61.5
Pavlov. Cond. lever contacts0.60.91.01.0-1.00.7
Pavlov. Cond. magazine entry number1.51.92.90.11.7-1.7
Pavlov. Cond. intertrial magazine entries0.30.40.70.80.6-0.4
Pavlov. Cond. lever-magazine prob. diff.1.21.52.50.1-1.61.4
Pavlov. Cond. response bias0.70.91.60.5-1.30.9
Time in closed arm before self-admin1.01.13.3-1.8-0.10.1
Time in closed arm after self-admin0.40.40.6-0.6-0.50.8
Time in open arm before self-admin2.02.23.31.81.3-1.2
Time in open arm after self-admin1.51.72.21.51.1-1.3
Bone: periosteal estimation0.71.43.71.90.5-0.3
Bone: periosteal perimeter0.71.21.31.11.2-1.0
Bone: post-yield work1.31.83.01.71.1-1.1
Progressive ratio test 1 active lever presses1.41.52.01.21.0-1.4
Progressive ratio test 1 breakpoint1.61.61.91.31.2-1.4
Progressive ratio test 1 inactive lever presses3.53.84.71.52.1-2.2
Progressive ratio test 2 active lever presses1.71.82.30.91.5-1.5
Progressive ratio test 2 breakpoint1.31.52.10.61.4-1.4
Progressive ratio test 2 inactive lever presses0.50.61.11.10.5-0.5
Incentive Sensitization - Responses0.80.81.10.91.1-0.7
Incentive Sensitization - Breakpoint0.60.60.90.70.9-0.7
Sum of active levers in priming session hrs 5-61.81.73.6-1.90.9-0.9
Progressive ratio0.00.00.1-0.10.2-0.3
Food seeking constrained by brief footshock6.47.916.24.01.9-2.0
Seeking ratio, punishment vs. effort1.51.84.62.10.6-0.6
Retroperitoneal fat weight0.10.40.7-0.8-0.40.6
Reaction time number correct0.40.50.80.30.8-0.9
Reaction time mean minus median3.24.26.4-0.0-2.52.5
Reaction time mean minus median AUC2.02.64.00.6-2.01.8
Reaction time num false alarms0.40.61.1-0.2-1.10.7
Reaction time num false alarms AUC0.10.10.20.5-0.40.1
Reaction time trials correct on left0.40.50.80.30.8-0.9
Reaction time trials on left0.30.40.70.20.8-0.8
Reaction time mean3.14.45.8-1.6-2.22.4
Reaction time mean AUC3.64.96.1-1.7-2.42.5
Median of all reaction times2.33.24.3-2.1-1.51.7
Reaction time omissions0.91.32.8-1.7-0.70.8
Reaction time false alarm rate0.40.51.1-0.3-1.00.7
Reaction time premature initiation rate2.22.94.8-2.2-1.41.4
Reaction time premature initiations1.11.63.3-1.8-0.90.8
Std. dev. reaction times3.34.76.9-0.8-2.62.5
Reaction time trials completed0.30.40.70.20.8-0.8
Reaction time trials AUC0.30.40.60.10.8-0.8
Run reversals in cocaine runway, females0.60.50.8-0.3-0.80.9
Run reversals in cocaine runway, males0.00.00.1-0.1-0.20.2
Latency to leave start box in cocaine runway0.30.30.60.8-0.30.4
Latency to leave start box in cocaine runway, F0.10.10.2-0.20.4-0.2
Latency to leave start box in cocaine runway, M1.11.12.51.60.6-0.6
Std. dev. time between licks in bursts0.20.30.6-0.8-0.40.2
Total sessions with >9 infusions2.62.94.20.91.9-2.0
Short access day 1 total inactive lever presses2.52.85.72.41.2-1.1
Short access day 10 total inactive lever presses0.20.20.50.7-0.20.1
Short access day 1 total infusions4.34.65.02.22.0-2.2
Short access day 10 total infusions2.22.53.21.11.8-1.7
Short access total infusions3.03.44.51.41.9-2.1
Short access day 1 locomotion0.80.81.5-0.30.9-1.2
Short access day 10 total locomotion0.80.91.4-1.2-0.90.7
Short access total locomotion0.70.71.30.20.9-1.1
One hour access (0.3 mA shock)0.91.11.30.91.1-1.0
Compulsive drug intake0.30.30.70.50.9-0.2
One hour access (shock baseline)0.91.01.50.81.0-1.2
Social response proportion1.31.42.4-1.5-0.61.2
Social responses0.20.30.90.90.20.0
Social time0.10.10.2-0.10.5-0.1
Soleus weight1.75.07.80.32.7-2.8
Bone: stiffness1.32.16.32.5-0.10.1
Tibialis anterior weight3.512.029.95.51.7-1.8
Time to tail flick, vehicle, before self-admin1.31.33.5-1.9-0.50.3
Time to tail flick, vehicle, after self-admin0.00.00.00.20.1-0.2
Time to tail flick, test, before self-admin0.20.20.50.7-0.20.4
Time to tail flick, test, after self-admin0.60.61.00.2-0.91.0
Delta time to tail flick, vehicle, before/after SA0.40.41.21.10.3-0.1
Delta time to tail flick, test, before/after SA0.20.20.3-0.6-0.30.3
Tibia length0.82.33.60.51.9-1.7
Ambulatory time before self-admin3.73.86.52.61.6-1.5
Ambulatory time after self-admin0.30.40.90.90.5-0.2
Bone: tissue strength0.10.10.10.4-0.20.4
Total heroin consumption0.80.91.7-0.41.0-1.3
Bone: trabecular number0.50.81.11.0-0.90.7
Bone: trabecular spacing0.30.40.8-0.0-0.70.9
Bone: trabecular thickness0.10.20.3-0.5-0.40.2
Bone: trabecular tissue density1.31.95.52.30.1-0.3
Water consumed over 24 hours0.40.51.51.20.10.2
Number of responses in last shaping day4.24.46.11.12.4-2.5