Slc22a12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Slc22a12 0.07 0.05 6.1e-04 0.06 0.06 0.06 0.06 2.5e-04 3.8e-04 4.8e-04 4.6e-04
2 PL gene expression Slc22a12 0.03 0.02 5.0e-04 0.03 0.03 0.03 0.03 1.9e-04 2.0e-04 3.4e-04 2.7e-04
3 Brain gene expression Slc22a12 0.07 0.04 1.5e-05 0.05 0.05 0.07 0.06 3.0e-05 1.2e-05 3.7e-07 5.8e-06
4 NAcc gene expression Slc22a12 0.02 0.02 5.4e-03 0.01 0.01 0.01 0.01 1.4e-02 8.5e-03 1.5e-02 5.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.93.8-0.7-0.7-1.6-1.9
Area under the delay curve0.20.20.70.10.1-0.5-0.8
BMI with tail3.913.321.8-2.4-2.4-4.5-4.7
BMI without tail1.44.36.4-1.5-1.5-2.5-2.5
Body weight4.017.423.4-3.8-3.8-4.8-4.2
Weight adjusted by age1.01.52.3-1.5-1.5-1.1-0.3
Bone surface5.49.812.5-3.0-3.0-3.5-2.9
Bone volume2.34.15.7-1.7-1.7-2.4-2.3
Breakpoint value in progressive ratio session2.42.94.0-2.0-2.0-1.5-1.1
Number of licking bursts0.20.30.5-0.7-0.7-0.30.0
Context. condit. distance diff. score1.41.73.01.71.71.0-0.0
Locomotion velocity, session 10.20.20.7-0.0-0.0-0.5-0.8
Locomotion distance, session 11.31.63.2-0.6-0.6-1.6-1.8
Locomotion velocity, session 22.63.03.8-1.8-1.8-1.9-1.4
Locomotion distance, session 20.81.11.6-0.9-0.9-1.3-1.2
Locomotion velocity, session 31.21.44.00.50.5-1.0-2.0
Locomotion distance, session 30.10.10.20.20.2-0.3-0.5
Stereotopy head waving bouts, day 31.21.43.60.80.8-0.7-1.9
Stereotopy head waving duration, day 30.40.50.80.90.9-0.0-0.7
Locomotion velocity, session 70.70.71.50.70.7-0.6-1.2
Locomotion distance, session 70.30.41.00.10.1-0.6-1.0
Stereotopy head waving bouts, day 70.10.10.40.00.0-0.3-0.6
Stereotopy head waving duration, day 70.70.81.0-1.0-1.0-1.0-0.7
Locomotion velocity, session 80.91.11.2-1.0-1.0-1.1-1.1
Locomotion distance, session 80.60.92.30.70.7-0.6-1.5
Degree of sensitization distance0.50.51.40.00.0-0.7-1.2
Degree of sensitization stereotypy0.50.50.6-0.8-0.8-0.7-0.5
Conditioned locomotion1.51.82.6-1.6-1.6-1.1-0.7
Cocaine response after cond. corrected0.81.01.71.31.30.8-0.2
Cocaine response after cond. not corrected0.70.81.41.21.20.5-0.4
Cocaine response before conditioning0.40.50.7-0.8-0.8-0.80.0
Saline control response3.74.96.7-2.6-2.6-2.3-1.1
Bone: connectivity density3.04.76.2-1.9-1.9-2.5-2.3
Bone: cortical apparent density0.40.61.8-0.3-0.30.61.4
Bone: cortical area0.61.01.3-1.1-1.1-1.1-0.5
Bone: cortical porosity0.10.10.2-0.5-0.5-0.3-0.0
Bone: cortical porosity0.50.50.7-0.9-0.9-0.8-0.3
Bone: cortical thickness1.72.94.9-2.2-2.2-1.10.5
Bone: cortical thickness0.20.30.4-0.7-0.7-0.5-0.1
Bone: cortical tissue density0.50.61.9-0.5-0.50.51.4
Condit. Reinf. active minus inactive responses0.10.10.1-0.3-0.3-0.30.0
Condit. Reinf. active-inactive response ratio0.20.20.7-0.1-0.10.30.8
Condit. Reinf. active responses0.00.00.10.00.0-0.3-0.3
Condit. Reinf. inactive responses0.30.41.00.40.4-0.4-1.0
Incentive salience index mean0.30.40.7-0.5-0.5-0.9-0.7
Condit. Reinf. lever presses0.71.01.5-0.7-0.7-1.2-1.2
Condit. Reinf. active minus inactive responses0.00.00.10.20.20.0-0.1
Condit. Reinf. active-inactive response ratio0.40.50.80.90.90.0-0.5
Condit. Reinf. active responses0.10.10.1-0.3-0.3-0.2-0.0
Condit. Reinf. inactive responses0.30.40.6-0.8-0.8-0.30.2
Condit. Reinf. lever presses1.92.63.0-1.7-1.7-1.7-1.3
Condit. Reinf. lever reinforcers received0.20.30.5-0.7-0.7-0.4-0.0
Conditioned reinforcement - actives0.00.00.0-0.1-0.1-0.0-0.0
Conditioned reinforcement - inactives2.23.34.32.12.12.00.8
Conditioned locomotion7.19.310.93.33.33.32.2
Patch foraging indifference point 0 sec0.00.00.10.20.20.10.3
Patch foraging indifference point AUC1.52.23.5-1.9-1.9-1.3-0.1
Delay disc. indifference point, 0s delay0.80.93.10.40.4-0.5-1.8
Delay disc. indifference point, 16s delay0.60.60.90.90.90.70.5
Delay disc. indifference point, 2s delay0.30.41.10.30.3-0.3-1.1
Delay disc. indifference point, 24s delay0.10.10.20.20.20.10.5
Delay disc. indifference point, 4s delay0.30.30.70.20.2-0.5-0.9
Delay disc. indifference point, 8s delay0.10.10.40.00.0-0.4-0.6
Indifference point function ln k4.78.213.03.63.62.50.5
Indifference point function log k4.78.213.03.63.62.50.5
Patch foraging total patch changes 0 sec0.00.10.30.10.10.20.5
Patch foraging total patch changes 12 sec3.54.56.5-2.5-2.5-2.1-0.8
Patch foraging total patch changes 18 sec0.30.50.8-0.8-0.8-0.9-0.1
Patch foraging total patch changes 24 sec1.11.82.9-1.7-1.7-1.2-0.0
Patch foraging total patch changes 6 sec0.91.31.8-1.2-1.2-1.3-0.8
Patch foraging time to switch 0 sec1.93.95.9-1.6-1.6-2.4-2.2
Patch foraging water rate 0 sec3.77.710.72.62.63.32.5
Patch foraging water rate 12 sec6.513.616.93.83.84.12.9
Patch foraging water rate 18 sec2.23.44.72.22.21.81.1
Patch foraging water rate 24 sec3.75.26.32.52.52.51.4
Patch foraging water rate 6 sec4.26.27.82.62.62.81.8
Seeking ratio, delayed vs. immediate footshock0.10.10.10.30.30.40.3
Distance traveled before self-admin0.60.81.0-0.8-0.8-1.0-0.9
Distance traveled after self-admin0.20.30.6-0.5-0.50.30.8
Extensor digitorum longus weight7.228.134.7-5.9-5.9-5.7-3.3
Bone: elastic displacement1.41.62.21.01.01.51.4
Bone: elastic work0.50.71.0-1.0-1.0-0.8-0.0
Bone: endosteal estimation1.12.35.41.31.3-0.9-2.3
Bone: endosteal perimeter1.12.45.11.41.4-0.6-2.3
Epididymis fat weight2.06.911.43.43.42.20.2
Delta time in closed arm before/after self-admin0.30.30.5-0.4-0.4-0.7-0.7
Delta time in open arm before/after self-admin0.10.10.2-0.4-0.40.00.2
Diff in mean of infusions in LGA sessions0.40.50.8-0.9-0.9-0.5-0.2
Delay discount exponential model param0.20.20.50.00.00.50.7
Extinction: sum of active levers before priming2.42.63.3-1.7-1.7-1.8-1.2
Active lever presses in extinction session 63.03.03.6-1.9-1.9-1.8-1.1
Bone: final force2.94.66.4-2.1-2.1-2.5-1.8
Bone: final moment2.64.25.9-2.0-2.0-2.4-1.7
Food consumed during 24 hour testing period0.30.41.2-0.3-0.30.61.1
Glucose1.52.44.02.02.00.6-1.1
Heart weight1.11.73.71.21.2-0.5-1.9
Delay discount hyperbolic model param0.20.30.70.00.00.60.8
Intermittent access intake day 1-15 change1.02.02.41.41.41.61.2
Intermittent access intake escalation0.81.62.01.21.21.41.2
Intermittent access intake escalation 21.21.41.81.11.11.41.1
Intermitt. access day 1 inactive lever presses0.10.30.40.40.40.70.6
Intermitt. access day 15 inactive lever presses0.91.82.71.61.61.30.3
Intermitt. access escalation Index2.43.44.22.02.02.01.2
Intermittent access day 1 total infusions1.42.33.41.81.80.3-1.5
Intermittent access day 15 total infusions3.24.77.82.82.81.80.2
Intermittent access terminal intake (last 3 days)2.73.56.22.52.51.1-0.7
Intermittent access total infusions2.32.74.72.22.20.7-1.0
Intermittent access day 1 locomotion1.21.62.61.61.60.5-0.9
Intermittent access day 15 total locomotion2.03.76.22.52.51.60.1
Intermittent access total locomotion4.14.98.62.92.91.5-0.5
Intermittent access standard deviation0.81.62.11.41.41.40.6
Left kidney weight0.41.62.91.71.70.4-0.7
Right kidney weight0.10.61.21.11.10.4-0.3
Cocaine induced anxiety0.00.00.0-0.1-0.1-0.2-0.1
Post-drug Anxiety0.60.70.8-0.9-0.9-0.8-0.6
Baseline Anxiety0.30.30.5-0.7-0.7-0.4-0.2
Tail length0.31.12.0-1.4-1.4-0.50.4
Length with tail1.66.99.8-3.1-3.1-2.5-1.3
Length without tail1.75.57.3-2.7-2.7-2.4-1.3
Times rat made contact with spout0.30.40.6-0.8-0.8-0.30.4
Lifetime Intake1.72.13.41.81.80.5-1.1
Liver weight, left0.50.81.41.21.20.4-0.5
Liver weight, right1.42.44.32.12.10.8-0.6
Locomotor activity1.92.93.61.91.91.81.1
Locomotor testing distance1.93.34.52.12.11.90.9
Locomotor testing rearing1.53.04.32.12.11.70.7
Locomotion in novel chamber3.95.07.42.72.72.10.8
Locomotion in novel chamber post-restriction2.33.75.32.32.31.80.9
Fecal boli incidents, locomotor time 10.00.00.1-0.2-0.2-0.2-0.3
Change in fecal boli incidents, locomotor task0.00.00.10.10.1-0.3-0.2
Time >=10cm from walls, locomotor time 10.60.61.40.70.7-0.4-1.2
Bouts of movement, locomotor time 11.71.93.8-1.3-1.30.41.9
Total resting periods, locomotor time 11.31.53.4-1.1-1.10.51.8
Rest time, locomotor task time 11.51.92.11.41.41.51.2
Distance moved, locomotor task time 10.40.71.6-0.3-0.3-0.9-1.3
Vertical activity count, locomotor time 10.30.81.31.21.20.6-0.5
Time >=10cm from walls, locomotor time 20.10.20.2-0.4-0.40.30.5
Bouts of movement, locomotor time 20.30.40.6-0.7-0.7-0.10.7
Total resting periods, locomotor time 20.10.20.4-0.4-0.40.10.7
Rest time, locomotor task time 21.41.83.11.81.80.90.2
Distance moved, locomotor task time 20.80.91.7-1.3-1.3-0.60.1
Vertical activity count, locomotor time 20.10.20.40.10.10.60.6
Light reinforcement 10.10.30.60.40.40.40.8
Light reinforcement 20.40.70.91.01.00.70.6
Bone: marrow area1.12.45.41.41.4-0.8-2.3
Bone: maximum diameter0.30.61.1-0.5-0.5-1.0-1.0
Bone: maximum force4.68.212.6-2.5-2.5-3.5-2.9
Bone: maximum moment4.27.411.3-2.3-2.3-3.4-2.7
Mean time between licks in bursts0.10.20.4-0.6-0.6-0.30.1
Mean num. licks in bursts0.20.20.30.50.50.50.5
Cd content in liver1.01.11.51.21.21.00.7
Co content in liver2.63.14.71.21.22.12.2
Cu content in liver0.20.20.50.10.10.50.7
Fe content in liver0.40.51.0-0.3-0.3-0.9-1.0
K content in liver1.21.12.0-0.7-0.7-1.3-1.4
Mg content in liver0.20.20.40.60.60.1-0.4
Mn content in liver2.73.04.2-2.1-2.1-1.8-0.6
Na content in liver0.30.30.5-0.7-0.7-0.7-0.2
Rb content in liver1.41.62.71.61.61.00.2
Se content in liver0.10.10.20.40.40.40.2
Sr content in liver1.91.62.9-1.7-1.7-0.80.2
Zn content in liver0.20.20.4-0.6-0.6-0.10.4
Bone: minimum diameter0.81.52.81.21.2-0.5-1.7
Time in familiar zone, hab. session 10.20.20.40.60.6-0.0-0.2
Time in novel zone, hab. session 10.10.10.30.30.30.60.2
Total zone transitions, hab. session 10.40.60.9-0.9-0.9-0.8-0.3
Total locomotion distance, hab. session 10.20.30.60.60.6-0.2-0.8
Locomotion velocity, hab. session 10.10.10.30.10.1-0.3-0.5
Time in familiar zone, hab. session 20.00.00.00.10.1-0.00.1
Time in novel zone, hab. session 20.10.10.1-0.3-0.3-0.1-0.2
Total zone transitions, hab. session 22.12.63.7-1.3-1.3-1.9-1.9
Total locomotion distance, hab. session 20.60.82.20.10.1-1.0-1.5
Locomotion velocity, hab. session 20.60.82.20.20.2-0.9-1.5
Novel to familiar place preference ratio0.80.81.2-1.1-1.1-0.8-0.4
Novelty place preference0.30.30.5-0.7-0.7-0.4-0.2
Time in novel zone, NPP test0.20.20.4-0.6-0.6-0.4-0.3
Total zone transitions, NPP test2.53.64.3-1.9-1.9-2.1-1.6
Total locomotion distance, NPP test0.50.61.7-0.2-0.2-0.9-1.3
Locomotion velocity, NPP test0.30.40.9-0.3-0.3-0.7-0.9
Intraocular pressure2.23.25.51.21.22.12.3
Delta distance traveled before/after self-admin0.60.71.40.30.31.01.2
Delta ambulatory time before/after self-admin0.30.30.80.10.10.80.9
Parametrial fat weight2.14.98.42.92.91.6-0.1
Pavlov. Cond. lever latency0.40.50.60.60.60.80.7
Pavlov. Cond. magazine entry latency0.50.70.9-0.7-0.7-0.9-1.0
Pavlov. Cond. change in total contacts0.10.10.2-0.4-0.4-0.2-0.2
Pavlov. Cond. index score0.20.30.5-0.7-0.7-0.4-0.1
Pavlov. Cond. latency score0.20.20.3-0.5-0.5-0.5-0.4
Pavlov. Cond. lever contacts0.30.30.5-0.4-0.4-0.7-0.7
Pavlov. Cond. magazine entry number0.30.30.60.80.80.1-0.3
Pavlov. Cond. intertrial magazine entries1.51.82.90.90.91.61.7
Pavlov. Cond. lever-magazine prob. diff.0.40.50.8-0.9-0.9-0.6-0.3
Pavlov. Cond. response bias0.20.20.4-0.7-0.7-0.30.1
Pavlov. Cond. lever latency0.60.81.01.01.00.90.7
Pavlov. Cond. magazine entry latency3.74.55.8-2.4-2.4-2.3-1.1
Pavlov. Cond. change in total contacts1.21.92.7-1.6-1.6-1.3-0.6
Pavlov. Cond. index score2.33.13.8-2.0-2.0-1.9-1.1
Pavlov. Cond. latency score2.12.73.3-1.8-1.8-1.8-1.2
Pavlov. Cond. lever contacts0.60.81.0-1.0-1.0-0.9-0.6
Pavlov. Cond. magazine entry number5.87.210.23.23.22.71.1
Pavlov. Cond. intertrial magazine entries0.91.41.91.41.41.20.6
Pavlov. Cond. lever-magazine prob. diff.2.73.64.6-2.1-2.1-2.0-1.1
Pavlov. Cond. response bias2.02.73.5-1.9-1.9-1.7-1.0
Time in closed arm before self-admin0.10.20.30.50.50.20.1
Time in closed arm after self-admin0.20.30.50.70.70.30.2
Time in open arm before self-admin0.10.10.20.40.40.40.1
Time in open arm after self-admin0.10.10.1-0.3-0.30.10.1
Bone: periosteal estimation0.71.43.70.10.1-1.4-1.9
Bone: periosteal perimeter0.61.12.4-0.4-0.4-1.2-1.6
Bone: post-yield work3.34.911.3-0.8-0.8-2.6-3.4
Progressive ratio test 1 active lever presses0.20.20.30.50.50.2-0.5
Progressive ratio test 1 breakpoint0.20.20.30.50.50.1-0.6
Progressive ratio test 1 inactive lever presses0.10.10.10.30.30.40.1
Progressive ratio test 2 active lever presses1.71.93.11.81.81.20.2
Progressive ratio test 2 breakpoint1.71.93.11.81.81.20.2
Progressive ratio test 2 inactive lever presses4.97.911.23.33.32.81.2
Incentive Sensitization - Responses0.20.20.70.10.1-0.4-0.8
Incentive Sensitization - Breakpoint0.10.20.40.40.4-0.2-0.6
Sum of active levers in priming session hrs 5-60.90.91.2-1.0-1.00.11.1
Progressive ratio1.92.94.5-1.3-1.3-2.0-2.1
Food seeking constrained by brief footshock0.00.00.1-0.1-0.1-0.2-0.2
Seeking ratio, punishment vs. effort1.92.83.51.51.51.91.7
Retroperitoneal fat weight6.829.045.26.76.74.81.6
Reaction time number correct0.10.20.2-0.5-0.5-0.10.4
Reaction time mean minus median2.04.96.3-2.5-2.5-2.3-1.2
Reaction time mean minus median AUC0.92.33.5-1.9-1.9-1.5-0.5
Reaction time num false alarms0.40.50.60.80.80.80.5
Reaction time num false alarms AUC0.00.00.10.10.10.30.3
Reaction time trials correct on left0.10.20.2-0.5-0.5-0.10.4
Reaction time trials on left0.10.20.4-0.6-0.6-0.20.4
Reaction time mean0.10.10.2-0.4-0.4-0.0-0.1
Reaction time mean AUC0.00.10.1-0.4-0.4-0.0-0.1
Median of all reaction times0.10.10.30.20.20.50.0
Reaction time omissions1.42.03.4-1.9-1.9-1.1-0.2
Reaction time false alarm rate0.20.20.40.60.60.4-0.0
Reaction time premature initiation rate2.13.04.0-2.0-2.0-1.7-1.0
Reaction time premature initiations2.13.86.1-2.5-2.5-1.7-0.4
Std. dev. reaction times0.71.32.0-1.4-1.4-1.0-0.3
Reaction time trials completed0.10.20.4-0.6-0.6-0.20.4
Reaction time trials AUC0.10.10.2-0.4-0.4-0.10.3
Run reversals in cocaine runway, females1.31.32.9-0.5-0.5-1.4-1.7
Run reversals in cocaine runway, males0.30.30.40.70.70.60.0
Latency to leave start box in cocaine runway0.20.30.70.30.3-0.4-0.8
Latency to leave start box in cocaine runway, F0.00.10.20.10.1-0.2-0.4
Latency to leave start box in cocaine runway, M0.40.41.00.00.0-0.7-1.0
Std. dev. time between licks in bursts0.00.00.10.10.10.30.2
Total sessions with >9 infusions0.50.61.90.00.0-0.7-1.4
Short access day 1 total inactive lever presses1.62.13.21.81.81.30.4
Short access day 10 total inactive lever presses0.40.90.90.90.90.91.0
Short access day 1 total infusions0.91.11.91.41.40.3-0.8
Short access day 10 total infusions1.11.44.10.70.7-0.7-2.0
Short access total infusions1.01.23.50.70.7-0.6-1.9
Short access day 1 locomotion1.01.22.21.51.50.7-0.1
Short access day 10 total locomotion0.40.81.31.21.20.5-0.4
Short access total locomotion0.91.11.91.41.40.6-0.5
One hour access (0.3 mA shock)5.05.88.93.03.02.20.7
Compulsive drug intake1.11.22.2-1.5-1.5-0.60.5
One hour access (shock baseline)4.36.610.23.23.22.30.7
Social response proportion0.50.60.8-0.9-0.9-0.6-0.5
Social responses0.20.20.5-0.7-0.7-0.3-0.0
Social time0.20.20.4-0.7-0.7-0.3-0.1
Soleus weight3.49.914.13.83.83.01.5
Bone: stiffness3.04.97.4-2.1-2.1-2.7-1.9
Tibialis anterior weight8.328.140.4-6.4-6.4-5.2-2.2
Time to tail flick, vehicle, before self-admin0.80.81.5-0.5-0.5-1.1-1.2
Time to tail flick, vehicle, after self-admin2.22.96.5-0.8-0.8-2.0-2.6
Time to tail flick, test, before self-admin1.31.42.51.61.60.4-0.6
Time to tail flick, test, after self-admin0.10.10.4-0.2-0.2-0.2-0.6
Delta time to tail flick, vehicle, before/after SA1.01.02.0-0.5-0.5-1.1-1.4
Delta time to tail flick, test, before/after SA1.31.42.3-1.5-1.50.01.0
Tibia length0.71.93.1-1.7-1.7-1.3-0.3
Ambulatory time before self-admin0.30.50.6-0.6-0.6-0.8-0.7
Ambulatory time after self-admin0.30.40.80.50.50.90.6
Bone: tissue strength0.00.00.1-0.0-0.00.00.3
Total heroin consumption3.84.57.0-2.6-2.6-2.0-0.4
Bone: trabecular number1.11.93.0-1.0-1.0-1.6-1.7
Bone: trabecular spacing0.60.81.40.70.70.91.2
Bone: trabecular thickness0.30.30.60.70.70.3-0.4
Bone: trabecular tissue density3.95.86.72.62.62.61.7
Water consumed over 24 hours0.71.01.6-1.3-1.3-0.30.7
Number of responses in last shaping day0.00.10.10.00.00.30.4