Slc22a12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Slc22a12 0.07 0.05 6.1e-04 0.06 0.06 0.06 0.06 2.5e-04 3.8e-04 4.8e-04 4.5e-04
2 PL gene expression Slc22a12 0.03 0.02 5.0e-04 0.03 0.03 0.03 0.03 1.9e-04 2.0e-04 3.4e-04 2.6e-04
3 Brain gene expression Slc22a12 0.07 0.04 1.5e-05 0.05 0.05 0.07 0.06 3.0e-05 1.2e-05 3.8e-07 5.5e-06
4 NAcc gene expression Slc22a12 0.02 0.02 5.4e-03 0.01 0.01 0.01 0.01 1.4e-02 8.5e-03 1.5e-02 6.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.01.93.80.70.71.6-1.9
Area under the delay curve0.20.20.7-0.1-0.10.5-0.8
BMI with tail3.813.321.82.42.44.5-4.7
BMI without tail0.84.36.41.51.52.5-2.5
Body weight4.017.423.43.83.84.8-4.2
Weight adjusted by age0.51.52.31.51.51.1-0.3
Bone surface5.09.812.53.03.03.5-2.9
Bone volume2.14.15.71.71.72.4-2.3
Breakpoint value in progressive ratio session1.62.94.02.02.01.5-1.1
Number of licking bursts0.10.30.50.70.70.30.0
Context. condit. distance diff. score1.41.73.0-1.7-1.7-1.0-0.0
Locomotion velocity, session 10.20.20.70.00.00.5-0.8
Locomotion distance, session 11.31.63.20.60.61.6-1.8
Locomotion velocity, session 22.53.03.81.81.81.9-1.4
Locomotion distance, session 20.81.11.60.90.91.3-1.2
Locomotion velocity, session 31.21.44.0-0.5-0.51.0-2.0
Locomotion distance, session 30.10.10.2-0.2-0.20.3-0.5
Stereotopy head waving bouts, day 31.11.43.6-0.8-0.80.7-1.9
Stereotopy head waving duration, day 30.40.50.8-0.9-0.90.0-0.7
Locomotion velocity, session 70.60.71.5-0.7-0.70.6-1.2
Locomotion distance, session 70.30.41.0-0.1-0.10.6-1.0
Stereotopy head waving bouts, day 70.10.10.4-0.0-0.00.3-0.6
Stereotopy head waving duration, day 70.70.81.01.01.01.0-0.7
Locomotion velocity, session 80.91.11.21.01.01.1-1.1
Locomotion distance, session 80.60.92.3-0.7-0.70.6-1.5
Degree of sensitization distance0.40.51.4-0.0-0.00.7-1.2
Degree of sensitization stereotypy0.40.50.60.80.80.7-0.5
Conditioned locomotion1.51.82.61.61.61.1-0.7
Cocaine response after cond. corrected0.71.01.7-1.3-1.3-0.8-0.2
Cocaine response after cond. not corrected0.50.81.4-1.2-1.2-0.5-0.4
Cocaine response before conditioning0.40.50.70.80.80.80.0
Saline control response3.54.96.72.62.62.3-1.1
Bone: connectivity density2.94.76.21.91.92.5-2.3
Bone: cortical apparent density0.40.61.80.30.3-0.61.4
Bone: cortical area0.61.01.31.11.11.1-0.5
Bone: cortical porosity0.10.10.20.50.50.3-0.0
Bone: cortical porosity0.50.50.70.90.90.8-0.3
Bone: cortical thickness1.72.94.92.22.21.10.5
Bone: cortical thickness0.20.30.40.70.70.5-0.1
Bone: cortical tissue density0.40.61.90.50.5-0.51.4
Condit. Reinf. active minus inactive responses0.10.10.10.30.30.30.0
Condit. Reinf. active-inactive response ratio0.20.20.70.10.1-0.30.8
Condit. Reinf. active responses0.00.00.1-0.0-0.00.3-0.3
Condit. Reinf. inactive responses0.30.41.0-0.4-0.40.4-1.0
Incentive salience index mean0.30.40.70.50.50.9-0.7
Condit. Reinf. lever presses0.71.01.50.70.71.2-1.2
Condit. Reinf. active minus inactive responses0.00.00.1-0.2-0.2-0.0-0.1
Condit. Reinf. active-inactive response ratio0.30.50.8-0.9-0.9-0.0-0.5
Condit. Reinf. active responses0.10.10.10.30.30.2-0.0
Condit. Reinf. inactive responses0.20.40.60.80.80.30.2
Condit. Reinf. lever presses1.82.63.01.71.71.7-1.3
Condit. Reinf. lever reinforcers received0.20.30.50.70.70.4-0.0
Conditioned reinforcement - actives0.00.00.00.10.10.0-0.0
Conditioned reinforcement - inactives1.23.34.3-2.1-2.1-2.00.8
Conditioned locomotion6.29.310.9-3.3-3.3-3.32.2
Patch foraging indifference point 0 sec0.00.00.1-0.2-0.2-0.10.3
Patch foraging indifference point AUC0.92.23.51.91.91.3-0.1
Delay disc. indifference point, 0s delay0.80.93.1-0.4-0.40.5-1.8
Delay disc. indifference point, 16s delay0.40.60.9-0.9-0.9-0.70.5
Delay disc. indifference point, 2s delay0.30.41.1-0.3-0.30.3-1.1
Delay disc. indifference point, 24s delay0.00.10.2-0.2-0.2-0.10.5
Delay disc. indifference point, 4s delay0.30.30.7-0.2-0.20.5-0.9
Delay disc. indifference point, 8s delay0.10.10.4-0.0-0.00.4-0.6
Indifference point function ln k2.78.213.0-3.6-3.6-2.50.5
Indifference point function log k2.78.213.0-3.6-3.6-2.50.5
Patch foraging total patch changes 0 sec0.00.10.3-0.1-0.1-0.20.5
Patch foraging total patch changes 12 sec3.34.56.52.52.52.1-0.8
Patch foraging total patch changes 18 sec0.20.50.80.80.80.9-0.1
Patch foraging total patch changes 24 sec0.51.82.91.71.71.2-0.0
Patch foraging total patch changes 6 sec0.81.31.81.21.21.3-0.8
Patch foraging time to switch 0 sec1.03.95.91.61.62.4-2.2
Patch foraging water rate 0 sec2.07.710.7-2.6-2.6-3.32.5
Patch foraging water rate 12 sec3.413.616.9-3.8-3.8-4.12.9
Patch foraging water rate 18 sec1.53.44.7-2.2-2.2-1.81.1
Patch foraging water rate 24 sec3.65.26.3-2.5-2.5-2.51.4
Patch foraging water rate 6 sec4.26.27.8-2.6-2.6-2.81.8
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.3-0.3-0.40.3
Distance traveled before self-admin0.40.81.00.80.81.0-0.9
Distance traveled after self-admin0.20.30.60.50.5-0.30.8
Extensor digitorum longus weight7.028.134.75.95.95.7-3.3
Bone: elastic displacement1.31.62.2-1.0-1.0-1.51.4
Bone: elastic work0.50.71.01.01.00.8-0.0
Bone: endosteal estimation1.02.35.4-1.3-1.30.9-2.3
Bone: endosteal perimeter1.02.45.1-1.4-1.40.6-2.3
Epididymis fat weight1.46.911.4-3.4-3.4-2.20.2
Delta time in closed arm before/after self-admin0.30.30.50.40.40.7-0.7
Delta time in open arm before/after self-admin0.10.10.20.40.4-0.00.2
Diff in mean of infusions in LGA sessions0.30.50.80.90.90.5-0.2
Delay discount exponential model param0.10.20.5-0.0-0.0-0.50.7
Extinction: sum of active levers before priming1.72.63.31.71.71.8-1.2
Active lever presses in extinction session 63.03.03.61.91.91.8-1.1
Bone: final force2.84.66.42.12.12.5-1.8
Bone: final moment2.64.25.92.02.02.4-1.7
Food consumed during 24 hour testing period0.20.41.20.30.3-0.61.1
Glucose1.52.44.0-2.0-2.0-0.6-1.1
Heart weight1.11.73.8-1.2-1.20.5-1.9
Delay discount hyperbolic model param0.20.30.7-0.0-0.0-0.60.8
Intermittent access intake day 1-15 change0.42.02.4-1.4-1.4-1.61.2
Intermittent access intake escalation0.31.62.0-1.2-1.2-1.41.2
Intermittent access intake escalation 20.81.41.8-1.1-1.1-1.41.1
Intermitt. access day 1 inactive lever presses0.00.30.4-0.4-0.4-0.70.6
Intermitt. access day 15 inactive lever presses0.31.82.7-1.6-1.6-1.30.3
Intermitt. access escalation Index1.13.44.2-2.0-2.0-2.01.2
Intermittent access day 1 total infusions0.82.33.4-1.8-1.8-0.3-1.5
Intermittent access day 15 total infusions1.94.77.8-2.8-2.8-1.80.2
Intermittent access terminal intake (last 3 days)2.03.56.2-2.5-2.5-1.1-0.7
Intermittent access total infusions2.32.74.7-2.2-2.2-0.7-1.0
Intermittent access day 1 locomotion0.91.62.6-1.6-1.6-0.5-0.9
Intermittent access day 15 total locomotion1.03.76.2-2.5-2.5-1.60.1
Intermittent access total locomotion4.14.98.6-2.9-2.9-1.5-0.5
Intermittent access standard deviation0.31.62.1-1.4-1.4-1.40.6
Left kidney weight0.21.62.9-1.7-1.7-0.4-0.7
Right kidney weight0.10.61.2-1.1-1.1-0.4-0.3
Cocaine induced anxiety0.00.00.00.10.10.2-0.1
Post-drug Anxiety0.60.70.80.90.90.8-0.6
Baseline Anxiety0.20.30.50.70.70.4-0.2
Tail length0.21.12.01.41.40.50.4
Length with tail1.66.99.83.13.12.5-1.3
Length without tail1.05.57.32.72.72.4-1.3
Times rat made contact with spout0.30.40.60.80.80.30.4
Lifetime Intake1.72.13.4-1.8-1.8-0.5-1.1
Liver weight, left0.50.81.4-1.2-1.2-0.4-0.5
Liver weight, right1.42.44.3-2.1-2.1-0.8-0.6
Locomotor activity1.92.93.6-1.9-1.9-1.81.1
Locomotor testing distance1.43.34.5-2.1-2.1-1.90.9
Locomotor testing rearing0.83.04.3-2.1-2.1-1.70.7
Locomotion in novel chamber3.75.07.4-2.7-2.7-2.10.8
Locomotion in novel chamber post-restriction1.23.75.3-2.3-2.3-1.80.9
Fecal boli incidents, locomotor time 10.00.00.10.20.20.2-0.3
Change in fecal boli incidents, locomotor task0.00.00.1-0.1-0.10.3-0.2
Time >=10cm from walls, locomotor time 10.50.61.4-0.7-0.70.4-1.2
Bouts of movement, locomotor time 11.51.93.81.31.3-0.41.9
Total resting periods, locomotor time 11.31.53.41.11.1-0.51.8
Rest time, locomotor task time 11.21.92.1-1.4-1.4-1.51.2
Distance moved, locomotor task time 10.20.71.60.30.30.9-1.2
Vertical activity count, locomotor time 10.10.81.3-1.2-1.2-0.6-0.5
Time >=10cm from walls, locomotor time 20.10.20.20.40.4-0.30.5
Bouts of movement, locomotor time 20.10.40.60.70.70.10.7
Total resting periods, locomotor time 20.00.20.40.40.4-0.10.7
Rest time, locomotor task time 21.11.83.1-1.8-1.8-0.90.2
Distance moved, locomotor task time 20.70.91.71.31.30.60.1
Vertical activity count, locomotor time 20.10.20.4-0.1-0.1-0.60.6
Light reinforcement 10.10.30.6-0.4-0.4-0.40.8
Light reinforcement 20.30.70.9-1.0-1.0-0.70.6
Bone: marrow area1.02.45.4-1.4-1.40.8-2.3
Bone: maximum diameter0.30.61.10.50.51.0-1.0
Bone: maximum force4.28.212.62.52.53.5-2.9
Bone: maximum moment3.97.411.32.32.33.4-2.7
Mean time between licks in bursts0.00.20.40.60.60.30.1
Mean num. licks in bursts0.10.20.3-0.5-0.5-0.50.5
Cd content in liver1.01.11.5-1.2-1.2-1.00.7
Co content in liver2.63.14.7-1.2-1.2-2.12.2
Cu content in liver0.20.20.5-0.1-0.1-0.50.7
Fe content in liver0.40.51.00.30.30.9-1.0
K content in liver1.21.12.00.70.71.3-1.4
Mg content in liver0.20.20.4-0.6-0.6-0.1-0.4
Mn content in liver2.73.04.22.12.11.8-0.6
Na content in liver0.30.30.50.70.70.7-0.2
Rb content in liver1.41.62.7-1.6-1.6-1.00.2
Se content in liver0.10.10.2-0.4-0.4-0.40.2
Sr content in liver1.91.62.91.71.70.80.2
Zn content in liver0.20.20.40.60.60.10.4
Bone: minimum diameter0.81.52.8-1.2-1.20.5-1.7
Time in familiar zone, hab. session 10.20.20.4-0.6-0.60.0-0.2
Time in novel zone, hab. session 10.10.10.3-0.3-0.3-0.60.2
Total zone transitions, hab. session 10.40.60.90.90.90.8-0.3
Total locomotion distance, hab. session 10.20.30.6-0.6-0.60.2-0.8
Locomotion velocity, hab. session 10.10.10.3-0.1-0.10.3-0.5
Time in familiar zone, hab. session 20.00.00.0-0.1-0.10.00.1
Time in novel zone, hab. session 20.00.10.10.30.30.1-0.2
Total zone transitions, hab. session 22.12.63.71.31.31.9-1.9
Total locomotion distance, hab. session 20.60.82.2-0.1-0.11.0-1.5
Locomotion velocity, hab. session 20.60.82.2-0.2-0.20.9-1.5
Novel to familiar place preference ratio0.60.81.21.11.10.8-0.4
Novelty place preference0.20.30.50.70.70.4-0.2
Time in novel zone, NPP test0.20.20.40.60.60.4-0.3
Total zone transitions, NPP test2.43.64.31.91.92.1-1.6
Total locomotion distance, NPP test0.50.61.70.20.20.9-1.3
Locomotion velocity, NPP test0.30.40.90.30.30.7-0.9
Intraocular pressure1.93.25.5-1.2-1.2-2.12.3
Delta distance traveled before/after self-admin0.60.71.4-0.3-0.3-1.01.2
Delta ambulatory time before/after self-admin0.20.30.8-0.1-0.1-0.80.9
Parametrial fat weight2.14.98.4-2.9-2.9-1.6-0.1
Pavlov. Cond. lever latency0.40.50.6-0.6-0.6-0.80.7
Pavlov. Cond. magazine entry latency0.50.70.90.70.70.9-1.0
Pavlov. Cond. change in total contacts0.10.10.20.40.40.2-0.2
Pavlov. Cond. index score0.20.30.50.70.70.4-0.1
Pavlov. Cond. latency score0.20.20.30.50.50.5-0.4
Pavlov. Cond. lever contacts0.30.30.50.40.40.7-0.7
Pavlov. Cond. magazine entry number0.30.30.6-0.8-0.8-0.1-0.3
Pavlov. Cond. intertrial magazine entries1.51.82.9-0.9-0.9-1.61.7
Pavlov. Cond. lever-magazine prob. diff.0.40.50.80.90.90.6-0.3
Pavlov. Cond. response bias0.20.20.40.70.70.30.1
Pavlov. Cond. lever latency0.60.81.0-1.0-1.0-0.90.7
Pavlov. Cond. magazine entry latency3.24.55.82.42.42.3-1.1
Pavlov. Cond. change in total contacts0.81.92.71.61.61.3-0.6
Pavlov. Cond. index score2.03.13.82.02.01.9-1.1
Pavlov. Cond. latency score1.72.73.31.81.81.8-1.2
Pavlov. Cond. lever contacts0.60.81.01.01.00.9-0.6
Pavlov. Cond. magazine entry number5.57.210.2-3.2-3.2-2.71.1
Pavlov. Cond. intertrial magazine entries0.61.41.9-1.4-1.4-1.20.6
Pavlov. Cond. lever-magazine prob. diff.2.33.64.62.12.12.0-1.1
Pavlov. Cond. response bias2.02.73.51.91.91.7-1.0
Time in closed arm before self-admin0.10.20.3-0.5-0.5-0.20.1
Time in closed arm after self-admin0.20.30.5-0.7-0.7-0.30.2
Time in open arm before self-admin0.10.10.2-0.4-0.4-0.40.1
Time in open arm after self-admin0.00.10.10.30.3-0.10.1
Bone: periosteal estimation0.61.43.7-0.1-0.11.4-1.9
Bone: periosteal perimeter0.51.12.40.40.41.2-1.6
Bone: post-yield work2.84.911.30.80.82.6-3.4
Progressive ratio test 1 active lever presses0.10.20.3-0.5-0.5-0.2-0.6
Progressive ratio test 1 breakpoint0.10.20.3-0.5-0.5-0.1-0.6
Progressive ratio test 1 inactive lever presses0.00.10.1-0.3-0.3-0.40.1
Progressive ratio test 2 active lever presses1.41.93.1-1.8-1.8-1.20.2
Progressive ratio test 2 breakpoint1.51.93.1-1.8-1.8-1.20.2
Progressive ratio test 2 inactive lever presses2.57.911.2-3.3-3.3-2.81.2
Incentive Sensitization - Responses0.10.20.7-0.1-0.10.4-0.8
Incentive Sensitization - Breakpoint0.10.20.4-0.4-0.40.2-0.6
Sum of active levers in priming session hrs 5-60.90.91.21.01.0-0.11.1
Progressive ratio1.02.94.51.31.32.0-2.1
Food seeking constrained by brief footshock0.00.00.10.10.10.2-0.2
Seeking ratio, punishment vs. effort1.22.83.5-1.5-1.5-1.91.7
Retroperitoneal fat weight6.529.045.2-6.7-6.7-4.81.6
Reaction time number correct0.00.20.20.50.50.10.4
Reaction time mean minus median0.84.96.32.52.52.3-1.2
Reaction time mean minus median AUC0.32.33.51.91.91.5-0.5
Reaction time num false alarms0.30.50.6-0.8-0.8-0.80.5
Reaction time num false alarms AUC0.00.00.1-0.1-0.1-0.30.3
Reaction time trials correct on left0.00.20.20.50.50.10.4
Reaction time trials on left0.10.20.40.60.60.20.4
Reaction time mean0.00.10.20.40.40.0-0.1
Reaction time mean AUC0.00.10.10.40.40.0-0.1
Median of all reaction times0.10.10.3-0.2-0.2-0.5-0.0
Reaction time omissions1.22.03.41.91.91.1-0.2
Reaction time false alarm rate0.20.20.4-0.6-0.6-0.4-0.0
Reaction time premature initiation rate1.93.04.02.02.01.7-1.0
Reaction time premature initiations1.23.86.12.52.51.7-0.4
Std. dev. reaction times0.41.32.01.41.41.0-0.3
Reaction time trials completed0.10.20.40.60.60.20.4
Reaction time trials AUC0.00.10.20.40.40.10.3
Run reversals in cocaine runway, females1.21.32.90.50.51.4-1.7
Run reversals in cocaine runway, males0.30.30.4-0.7-0.7-0.60.0
Latency to leave start box in cocaine runway0.20.30.7-0.3-0.30.4-0.8
Latency to leave start box in cocaine runway, F0.00.10.2-0.1-0.10.2-0.4
Latency to leave start box in cocaine runway, M0.40.41.0-0.0-0.00.7-1.0
Std. dev. time between licks in bursts0.00.00.1-0.1-0.1-0.30.2
Total sessions with >9 infusions0.50.61.9-0.0-0.00.7-1.4
Short access day 1 total inactive lever presses1.02.13.2-1.8-1.8-1.30.4
Short access day 10 total inactive lever presses0.10.90.9-0.9-0.9-0.91.0
Short access day 1 total infusions0.61.11.9-1.4-1.4-0.3-0.8
Short access day 10 total infusions0.91.44.1-0.7-0.70.7-2.0
Short access total infusions0.91.23.5-0.7-0.70.6-1.9
Short access day 1 locomotion0.71.22.2-1.5-1.5-0.7-0.1
Short access day 10 total locomotion0.20.81.3-1.2-1.2-0.5-0.4
Short access total locomotion0.71.11.9-1.4-1.4-0.6-0.5
One hour access (0.3 mA shock)4.95.88.9-3.0-3.0-2.20.7
Compulsive drug intake0.81.22.21.51.50.60.5
One hour access (shock baseline)2.56.610.2-3.2-3.2-2.30.7
Social response proportion0.50.60.80.90.90.6-0.5
Social responses0.20.20.50.70.70.3-0.0
Social time0.20.20.40.70.70.3-0.1
Soleus weight3.49.914.1-3.8-3.8-3.01.5
Bone: stiffness2.74.97.42.12.12.7-1.9
Tibialis anterior weight8.228.140.46.46.45.2-2.2
Time to tail flick, vehicle, before self-admin0.60.81.50.50.51.1-1.2
Time to tail flick, vehicle, after self-admin1.42.96.50.80.82.0-2.6
Time to tail flick, test, before self-admin1.21.42.5-1.6-1.6-0.4-0.6
Time to tail flick, test, after self-admin0.10.10.40.20.20.2-0.6
Delta time to tail flick, vehicle, before/after SA0.91.02.00.50.51.1-1.4
Delta time to tail flick, test, before/after SA1.11.42.31.51.5-0.01.0
Tibia length0.71.93.11.71.71.3-0.3
Ambulatory time before self-admin0.20.50.60.60.60.8-0.7
Ambulatory time after self-admin0.30.40.8-0.5-0.5-0.90.6
Bone: tissue strength0.00.00.10.00.0-0.00.3
Total heroin consumption3.84.57.02.62.62.0-0.4
Bone: trabecular number1.01.93.01.01.01.6-1.7
Bone: trabecular spacing0.60.81.4-0.7-0.7-0.91.2
Bone: trabecular thickness0.20.30.6-0.7-0.7-0.3-0.4
Bone: trabecular tissue density3.35.86.7-2.6-2.6-2.61.7
Water consumed over 24 hours0.51.01.61.31.30.30.7
Number of responses in last shaping day0.00.10.1-0.0-0.0-0.30.4