Slc22a12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression Slc22a12 0.09 0.06 1.2e-04 0.07 0.09 0.08 0.09 1.4e-04 1.5e-05 3.3e-05 2.6e-05
2 PL gene expression Slc22a12 0.03 0.02 1.5e-04 0.03 0.03 0.03 0.03 2.3e-04 1.8e-04 3.3e-04 3.3e-04
3 Brain gene expression Slc22a12 0.06 0.04 3.7e-05 0.03 0.03 0.03 0.02 2.2e-03 1.9e-03 1.7e-03 8.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.81.31.7-1.2-0.81.3
Area under the delay curve0.00.00.10.0-0.10.4
BMI with tail4.715.321.4-3.7-3.34.6
BMI without tail2.85.78.5-2.0-2.12.9
Body weight5.121.225.4-4.4-4.45.0
Weight adjusted by age2.83.13.4-1.8-1.71.8
Bone surface6.010.613.6-3.7-2.83.2
Bone volume2.54.26.2-2.5-1.52.0
Breakpoint value in progressive ratio session3.33.64.5-2.1-1.91.6
Number of licking bursts0.20.30.4-0.6-0.50.4
Context. condit. distance diff. score1.61.92.41.51.5-1.2
Locomotion velocity, session 10.10.10.10.1-0.20.4
Locomotion distance, session 10.60.81.3-0.7-0.81.2
Locomotion velocity, session 23.33.84.0-1.9-2.01.9
Locomotion distance, session 20.60.91.1-0.7-1.01.0
Locomotion velocity, session 30.10.10.20.30.40.3
Locomotion distance, session 30.00.00.00.20.20.1
Stereotopy head waving bouts, day 30.30.30.50.70.70.0
Stereotopy head waving duration, day 30.50.60.90.80.9-0.5
Locomotion velocity, session 70.20.30.60.50.7-0.1
Locomotion distance, session 70.10.10.30.50.20.2
Stereotopy head waving bouts, day 70.10.10.2-0.20.4-0.2
Stereotopy head waving duration, day 71.31.62.4-1.5-1.11.1
Locomotion velocity, session 80.81.01.4-0.7-1.21.0
Locomotion distance, session 80.00.10.10.20.30.2
Degree of sensitization distance0.00.00.10.10.10.2
Degree of sensitization stereotypy0.70.71.4-1.2-0.60.6
Conditioned locomotion1.51.82.1-1.3-1.41.3
Cocaine response after cond. corrected1.51.72.41.61.3-1.0
Cocaine response after cond. not corrected0.91.01.61.31.0-0.7
Cocaine response before conditioning0.91.11.4-1.2-0.91.0
Saline control response4.45.76.5-2.2-2.52.4
Bone: connectivity density3.25.15.6-2.4-2.02.4
Bone: cortical apparent density0.10.10.2-0.1-0.50.1
Bone: cortical area0.91.31.9-1.4-1.01.1
Bone: cortical porosity0.10.10.1-0.2-0.20.2
Bone: cortical porosity0.50.60.7-0.7-0.80.7
Bone: cortical thickness2.13.44.7-1.6-2.21.7
Bone: cortical thickness0.40.40.7-0.2-0.80.7
Bone: cortical tissue density0.10.10.3-0.2-0.60.2
Condit. Reinf. active minus inactive responses0.10.10.2-0.3-0.40.4
Condit. Reinf. active-inactive response ratio0.00.00.00.1-0.1-0.1
Condit. Reinf. active responses0.00.00.1-0.2-0.10.2
Condit. Reinf. inactive responses0.00.00.1-0.10.30.1
Incentive salience index mean0.40.50.7-0.6-0.60.8
Condit. Reinf. lever presses0.60.81.0-0.9-0.71.0
Condit. Reinf. active minus inactive responses0.10.10.3-0.00.5-0.1
Condit. Reinf. active-inactive response ratio0.40.41.00.11.0-0.4
Condit. Reinf. active responses0.10.10.1-0.4-0.10.3
Condit. Reinf. inactive responses0.30.30.6-0.3-0.70.6
Condit. Reinf. lever presses2.73.65.0-2.2-1.61.8
Condit. Reinf. lever reinforcers received0.30.40.6-0.8-0.40.6
Conditioned reinforcement - actives0.30.30.5-0.00.6-0.7
Conditioned reinforcement - inactives6.67.49.02.22.9-3.0
Conditioned locomotion10.512.614.43.23.6-3.8
Patch foraging indifference point 0 sec0.00.10.10.20.3-0.3
Patch foraging indifference point AUC4.14.85.7-2.4-2.22.0
Delay disc. indifference point, 0s delay0.10.10.20.40.20.2
Delay disc. indifference point, 16s delay0.80.81.00.81.0-0.8
Delay disc. indifference point, 2s delay0.00.00.1-0.10.10.3
Delay disc. indifference point, 24s delay0.10.10.30.50.10.0
Delay disc. indifference point, 4s delay0.10.10.20.40.00.4
Delay disc. indifference point, 8s delay0.00.00.10.2-0.10.2
Indifference point function ln k9.212.916.04.03.5-3.2
Indifference point function log k9.212.916.04.03.5-3.2
Patch foraging total patch changes 0 sec0.10.10.20.40.2-0.3
Patch foraging total patch changes 12 sec5.06.46.9-2.6-2.62.4
Patch foraging total patch changes 18 sec0.91.21.3-1.1-0.91.2
Patch foraging total patch changes 24 sec2.63.23.6-1.8-1.91.7
Patch foraging total patch changes 6 sec0.91.31.4-1.0-1.21.2
Patch foraging time to switch 0 sec2.64.04.9-2.2-1.72.1
Patch foraging water rate 0 sec5.28.39.03.02.7-2.9
Patch foraging water rate 12 sec10.716.319.64.43.7-4.0
Patch foraging water rate 18 sec3.85.16.92.62.1-2.0
Patch foraging water rate 24 sec4.56.27.62.82.4-2.3
Patch foraging water rate 6 sec5.27.710.33.22.5-2.5
Seeking ratio, delayed vs. immediate footshock0.10.20.30.50.4-0.3
Distance traveled before self-admin0.80.81.4-1.2-0.80.7
Distance traveled after self-admin0.10.10.3-0.5-0.3-0.1
Extensor digitorum longus weight8.934.936.0-5.8-5.96.0
Bone: elastic displacement2.12.33.51.91.1-1.5
Bone: elastic work0.40.51.0-0.2-1.00.8
Bone: endosteal estimation0.20.51.40.31.2-0.2
Bone: endosteal perimeter0.40.72.00.21.4-0.4
Epididymis fat weight1.94.46.51.92.5-1.7
Delta time in closed arm before/after self-admin0.20.20.40.7-0.10.2
Delta time in open arm before/after self-admin0.20.20.6-0.7-0.20.1
Diff in mean of infusions in LGA sessions0.30.30.4-0.6-0.70.3
Delay discount exponential model param0.10.10.2-0.00.1-0.4
Extinction: sum of active levers before priming5.65.65.9-2.4-2.32.3
Active lever presses in extinction session 62.92.94.0-2.0-1.71.3
Bone: final force4.06.47.0-2.6-2.42.6
Bone: final moment3.55.76.2-2.5-2.22.4
Food consumed during 24 hour testing period0.00.00.1-0.3-0.1-0.3
Glucose1.42.03.11.31.8-1.1
Heart weight3.75.36.12.52.4-2.0
Delay discount hyperbolic model param0.10.10.20.00.2-0.5
Intermittent access intake day 1-15 change0.80.71.20.50.9-1.1
Intermittent access intake escalation0.60.60.90.50.9-1.0
Intermittent access intake escalation 20.30.30.50.10.5-0.7
Intermitt. access day 1 inactive lever presses2.62.83.31.51.8-1.7
Intermitt. access day 15 inactive lever presses2.93.24.11.32.0-1.9
Intermitt. access escalation Index3.12.73.71.91.6-1.4
Intermittent access day 1 total infusions4.14.77.01.92.6-1.9
Intermittent access day 15 total infusions7.48.311.22.33.4-2.8
Intermittent access terminal intake (last 3 days)4.14.57.21.52.7-2.0
Intermittent access total infusions3.64.06.31.52.5-1.9
Intermittent access day 1 locomotion2.72.84.11.62.0-1.3
Intermittent access day 15 total locomotion4.34.66.41.72.5-2.1
Intermittent access total locomotion4.45.07.91.72.8-2.0
Intermittent access standard deviation1.41.51.90.91.3-1.4
Left kidney weight0.51.31.90.91.4-1.0
Right kidney weight0.10.20.5-0.00.7-0.5
Cocaine induced anxiety0.10.10.2-0.5-0.10.2
Post-drug Anxiety1.41.62.5-1.6-1.21.0
Baseline Anxiety1.92.12.6-1.3-1.61.3
Tail length0.61.82.8-1.0-1.71.2
Length with tail2.07.28.5-2.6-2.92.6
Length without tail1.94.14.3-2.1-2.01.9
Times rat made contact with spout0.30.30.6-0.3-0.80.5
Lifetime Intake3.23.65.51.62.3-1.7
Liver weight, left0.00.00.10.00.20.3
Liver weight, right0.10.10.20.20.00.5
Locomotor activity2.64.15.72.41.8-1.8
Locomotor testing distance3.55.98.72.92.1-2.1
Locomotor testing rearing2.84.35.92.41.8-1.9
Locomotion in novel chamber4.15.17.11.82.7-2.2
Locomotion in novel chamber post-restriction3.13.74.51.82.1-1.9
Fecal boli incidents, locomotor time 10.30.40.9-1.0-0.20.3
Change in fecal boli incidents, locomotor task0.20.10.30.6-0.00.3
Time >=10cm from walls, locomotor time 10.20.20.5-0.20.70.1
Bouts of movement, locomotor time 10.50.61.1-0.8-1.0-0.2
Total resting periods, locomotor time 10.40.40.7-0.8-0.8-0.2
Rest time, locomotor task time 11.61.71.81.31.3-1.3
Distance moved, locomotor task time 10.40.40.7-0.6-0.40.9
Vertical activity count, locomotor time 11.31.41.71.21.3-1.1
Time >=10cm from walls, locomotor time 20.10.10.3-0.6-0.1-0.1
Bouts of movement, locomotor time 20.20.20.4-0.5-0.60.3
Total resting periods, locomotor time 20.10.10.1-0.3-0.40.2
Rest time, locomotor task time 22.32.63.41.61.8-1.3
Distance moved, locomotor task time 21.01.21.5-1.1-1.20.9
Vertical activity count, locomotor time 20.20.20.40.60.1-0.4
Light reinforcement 10.20.40.50.70.5-0.7
Light reinforcement 21.01.31.90.51.3-1.4
Bone: marrow area0.30.61.50.41.2-0.2
Bone: maximum diameter0.50.91.8-1.3-0.50.7
Bone: maximum force5.18.910.3-3.2-2.53.2
Bone: maximum moment4.47.68.8-3.0-2.32.9
Mean time between licks in bursts0.30.40.8-0.0-0.90.6
Mean num. licks in bursts0.20.30.50.70.4-0.4
Cd content in liver0.91.01.40.71.2-1.1
Co content in liver2.83.34.72.21.3-1.9
Cu content in liver0.20.20.3-0.5-0.60.3
Fe content in liver0.40.50.6-0.8-0.50.8
K content in liver2.82.73.8-1.5-1.42.0
Mg content in liver0.20.30.5-0.4-0.30.7
Mn content in liver2.93.34.3-2.1-1.71.7
Na content in liver1.41.41.7-1.3-1.11.2
Rb content in liver1.31.72.11.41.5-1.0
Se content in liver0.20.20.6-0.70.10.1
Sr content in liver2.82.63.3-1.7-1.81.2
Zn content in liver1.11.31.5-1.2-1.21.0
Bone: minimum diameter0.20.41.10.31.1-0.3
Time in familiar zone, hab. session 10.10.10.20.40.5-0.2
Time in novel zone, hab. session 10.30.30.60.70.4-0.5
Total zone transitions, hab. session 10.60.80.8-0.9-0.90.8
Total locomotion distance, hab. session 10.10.20.40.40.6-0.1
Locomotion velocity, hab. session 10.00.00.0-0.00.10.2
Time in familiar zone, hab. session 20.10.10.30.5-0.1-0.1
Time in novel zone, hab. session 20.10.10.2-0.5-0.10.2
Total zone transitions, hab. session 21.72.22.8-1.4-1.41.7
Total locomotion distance, hab. session 20.10.10.4-0.1-0.10.6
Locomotion velocity, hab. session 20.10.10.2-0.00.20.4
Novel to familiar place preference ratio1.81.83.0-1.7-1.11.1
Novelty place preference0.90.91.7-1.3-0.70.7
Time in novel zone, NPP test0.70.71.3-1.1-0.60.7
Total zone transitions, NPP test2.84.04.1-2.0-1.92.0
Total locomotion distance, NPP test0.10.10.3-0.3-0.20.6
Locomotion velocity, NPP test0.10.10.2-0.3-0.30.5
Intraocular pressure1.01.42.10.81.3-1.4
Delta distance traveled before/after self-admin0.20.20.30.60.2-0.5
Delta ambulatory time before/after self-admin0.10.10.30.50.1-0.3
Parametrial fat weight1.22.33.81.31.9-1.2
Pavlov. Cond. lever latency0.50.70.90.80.7-1.0
Pavlov. Cond. magazine entry latency0.50.60.8-0.9-0.60.8
Pavlov. Cond. change in total contacts0.20.20.5-0.7-0.10.2
Pavlov. Cond. index score0.30.30.5-0.7-0.50.5
Pavlov. Cond. latency score0.20.20.3-0.5-0.40.5
Pavlov. Cond. lever contacts0.10.10.2-0.2-0.20.5
Pavlov. Cond. magazine entry number0.30.40.70.90.6-0.4
Pavlov. Cond. intertrial magazine entries1.01.21.80.91.0-1.3
Pavlov. Cond. lever-magazine prob. diff.0.60.70.9-1.0-0.80.8
Pavlov. Cond. response bias0.20.20.3-0.5-0.30.4
Pavlov. Cond. lever latency0.81.11.71.30.8-1.0
Pavlov. Cond. magazine entry latency4.34.95.2-2.3-2.22.1
Pavlov. Cond. change in total contacts2.33.15.2-2.3-1.41.4
Pavlov. Cond. index score3.24.15.5-2.4-1.81.9
Pavlov. Cond. latency score2.83.44.7-2.2-1.61.8
Pavlov. Cond. lever contacts0.60.91.4-1.2-0.80.8
Pavlov. Cond. magazine entry number7.28.810.43.22.9-2.8
Pavlov. Cond. intertrial magazine entries0.91.21.51.11.2-1.0
Pavlov. Cond. lever-magazine prob. diff.3.84.86.2-2.5-2.02.1
Pavlov. Cond. response bias2.23.04.1-2.0-1.61.5
Time in closed arm before self-admin0.20.20.5-0.7-0.20.4
Time in closed arm after self-admin0.10.10.30.50.3-0.1
Time in open arm before self-admin1.11.22.61.60.7-0.7
Time in open arm after self-admin0.30.30.40.60.3-0.7
Bone: periosteal estimation0.20.40.7-0.80.10.6
Bone: periosteal perimeter0.30.51.1-1.0-0.30.7
Bone: post-yield work1.62.23.8-2.0-0.51.6
Progressive ratio test 1 active lever presses3.53.64.31.72.1-2.0
Progressive ratio test 1 breakpoint3.13.23.81.61.9-1.8
Progressive ratio test 1 inactive lever presses1.51.71.81.31.3-1.3
Progressive ratio test 2 active lever presses4.54.86.41.72.5-2.2
Progressive ratio test 2 breakpoint6.47.28.62.32.9-2.8
Progressive ratio test 2 inactive lever presses8.49.712.52.63.5-3.1
Incentive Sensitization - Responses0.50.50.70.30.9-0.8
Incentive Sensitization - Breakpoint0.80.81.10.51.1-1.0
Sum of active levers in priming session hrs 5-61.31.32.6-1.6-1.00.5
Progressive ratio3.74.34.8-2.2-1.82.2
Food seeking constrained by brief footshock0.10.10.20.0-0.40.4
Seeking ratio, punishment vs. effort3.23.95.62.41.6-1.9
Retroperitoneal fat weight4.916.120.63.84.5-3.6
Reaction time number correct0.20.30.4-0.5-0.70.6
Reaction time mean minus median4.25.67.4-2.7-2.12.2
Reaction time mean minus median AUC2.12.73.5-1.9-1.61.5
Reaction time num false alarms0.71.02.01.40.6-0.8
Reaction time num false alarms AUC0.10.20.50.7-0.1-0.1
Reaction time trials correct on left0.20.30.4-0.5-0.70.6
Reaction time trials on left0.30.40.6-0.5-0.70.7
Reaction time mean0.10.10.3-0.6-0.1-0.0
Reaction time mean AUC0.10.10.3-0.6-0.0-0.1
Median of all reaction times0.10.10.2-0.10.4-0.5
Reaction time omissions0.81.01.3-1.1-1.10.7
Reaction time false alarm rate0.40.61.31.10.5-0.5
Reaction time premature initiation rate2.22.94.2-1.2-2.11.7
Reaction time premature initiations3.24.56.6-1.6-2.62.1
Std. dev. reaction times0.91.22.0-1.4-1.00.9
Reaction time trials completed0.30.40.6-0.5-0.70.7
Reaction time trials AUC0.20.20.3-0.3-0.60.5
Run reversals in cocaine runway, females0.60.61.0-0.3-0.81.0
Run reversals in cocaine runway, males0.20.20.30.60.5-0.2
Latency to leave start box in cocaine runway0.00.00.0-0.10.2-0.0
Latency to leave start box in cocaine runway, F0.00.00.1-0.2-0.00.1
Latency to leave start box in cocaine runway, M0.00.00.00.00.2-0.0
Std. dev. time between licks in bursts0.30.40.91.00.2-0.5
Total sessions with >9 infusions1.71.82.41.31.6-1.1
Short access day 1 total inactive lever presses5.15.76.32.32.5-2.3
Short access day 10 total inactive lever presses4.95.46.72.62.2-2.1
Short access day 1 total infusions2.62.73.61.61.9-1.5
Short access day 10 total infusions0.91.01.90.81.4-0.6
Short access total infusions1.01.11.81.01.3-0.8
Short access day 1 locomotion1.82.02.61.41.6-1.2
Short access day 10 total locomotion1.31.41.91.11.4-1.0
Short access total locomotion1.21.21.61.11.3-0.9
One hour access (0.3 mA shock)10.212.014.73.13.8-3.4
Compulsive drug intake1.71.73.1-0.7-1.81.3
One hour access (shock baseline)8.710.013.42.43.7-3.3
Social response proportion1.11.21.5-1.2-1.10.9
Social responses0.40.50.6-0.5-0.70.8
Social time0.30.40.6-0.5-0.80.6
Soleus weight4.212.413.53.63.7-3.3
Bone: stiffness4.16.47.9-2.8-2.12.6
Tibialis anterior weight11.940.742.8-6.4-6.56.2
Time to tail flick, vehicle, before self-admin1.41.51.9-1.3-0.91.4
Time to tail flick, vehicle, after self-admin3.13.44.9-1.5-1.72.2
Time to tail flick, test, before self-admin0.40.40.60.80.7-0.2
Time to tail flick, test, after self-admin0.10.10.1-0.2-0.20.3
Delta time to tail flick, vehicle, before/after SA0.70.71.1-0.5-0.91.1
Delta time to tail flick, test, before/after SA0.80.71.1-1.0-1.00.4
Tibia length1.44.06.6-2.6-1.61.6
Ambulatory time before self-admin0.60.61.4-1.2-0.50.5
Ambulatory time after self-admin0.20.20.3-0.10.4-0.6
Bone: tissue strength0.00.00.1-0.20.0-0.0
Total heroin consumption5.96.97.8-2.7-2.82.4
Bone: trabecular number0.91.52.2-1.5-0.81.2
Bone: trabecular spacing0.50.71.31.10.5-0.7
Bone: trabecular thickness0.40.50.80.50.9-0.6
Bone: trabecular tissue density3.95.45.72.22.4-2.4
Water consumed over 24 hours0.50.61.0-0.6-1.00.5
Number of responses in last shaping day1.91.92.41.51.3-1.3