Slc1a7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL alternative polyA NM_001108973.1 0.02 0.01 5.7e-03 0 -0 -0 0.02 3.0e-01 6.0e-01 8.9e-01 3.5e-03
2 PL alternative polyA XM_017593537.2 0.02 0.01 4.1e-03 0.01 0 -0 0 1.6e-02 2.1e-01 6.9e-01 1.3e-01
3 PL alternative polyA NM_001108973.1 0.02 0.01 2.8e-03 0.01 0 -0 0 3.0e-02 1.4e-01 4.2e-01 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.61.11.20.91.1-1.1
Area under the delay curve0.10.20.30.50.2-0.3
BMI with tail1.23.84.5-1.8-2.11.9
BMI without tail0.00.10.20.10.3-0.4
Body weight0.83.34.0-2.0-1.81.7
Weight adjusted by age0.20.20.3-0.4-0.40.5
Bone surface0.30.50.60.50.8-0.7
Bone volume0.10.10.20.20.4-0.4
Breakpoint value in progressive ratio session0.40.40.50.70.7-0.6
Number of licking bursts0.20.30.4-0.3-0.60.6
Context. condit. distance diff. score0.10.10.20.10.4-0.3
Locomotion velocity, session 12.72.93.21.61.8-1.8
Locomotion distance, session 10.00.00.00.20.1-0.1
Locomotion velocity, session 22.52.93.41.61.9-1.7
Locomotion distance, session 20.50.60.7-0.8-0.80.7
Locomotion velocity, session 30.30.40.50.40.7-0.7
Locomotion distance, session 30.10.10.1-0.3-0.30.3
Stereotopy head waving bouts, day 30.00.10.1-0.2-0.30.2
Stereotopy head waving duration, day 30.00.00.0-0.10.1-0.1
Locomotion velocity, session 70.00.00.1-0.20.0-0.3
Locomotion distance, session 70.10.10.3-0.50.3-0.2
Stereotopy head waving bouts, day 70.70.80.90.90.8-0.9
Stereotopy head waving duration, day 71.21.41.61.31.1-1.2
Locomotion velocity, session 81.51.82.31.11.4-1.5
Locomotion distance, session 80.00.10.2-0.4-0.10.0
Degree of sensitization distance0.10.10.4-0.70.00.0
Degree of sensitization stereotypy0.50.60.70.80.6-0.8
Conditioned locomotion0.10.20.3-0.60.00.4
Cocaine response after cond. corrected1.82.12.1-1.4-1.51.4
Cocaine response after cond. not corrected2.83.13.3-1.7-1.71.8
Cocaine response before conditioning0.10.20.3-0.3-0.40.5
Saline control response0.00.00.10.1-0.3-0.0
Bone: connectivity density1.11.72.11.11.4-1.4
Bone: cortical apparent density1.82.32.51.51.6-1.5
Bone: cortical area1.21.92.8-1.7-1.21.1
Bone: cortical porosity0.00.00.0-0.00.2-0.0
Bone: cortical porosity0.20.20.20.40.4-0.5
Bone: cortical thickness2.94.85.2-2.3-2.22.1
Bone: cortical thickness1.72.02.1-1.4-1.51.3
Bone: cortical tissue density1.92.52.71.51.7-1.5
Condit. Reinf. active minus inactive responses0.30.40.5-0.5-0.50.7
Condit. Reinf. active-inactive response ratio0.60.70.7-0.9-0.90.8
Condit. Reinf. active responses0.70.91.4-0.7-1.01.2
Condit. Reinf. inactive responses0.10.10.10.3-0.10.3
Incentive salience index mean1.41.72.2-1.2-1.31.5
Condit. Reinf. lever presses1.41.82.1-1.3-1.31.4
Condit. Reinf. active minus inactive responses0.40.40.9-0.9-0.50.4
Condit. Reinf. active-inactive response ratio0.10.10.3-0.6-0.10.0
Condit. Reinf. active responses0.40.50.9-1.0-0.50.6
Condit. Reinf. inactive responses0.40.60.8-0.6-0.70.9
Condit. Reinf. lever presses0.20.30.40.50.7-0.4
Condit. Reinf. lever reinforcers received0.30.40.7-0.8-0.50.5
Conditioned reinforcement - actives2.42.42.5-1.5-1.51.6
Conditioned reinforcement - inactives0.30.30.4-0.7-0.50.6
Conditioned locomotion0.50.60.6-0.7-0.80.8
Patch foraging indifference point 0 sec0.30.50.7-0.8-0.70.6
Patch foraging indifference point AUC0.10.10.2-0.10.4-0.4
Delay disc. indifference point, 0s delay0.60.70.80.90.8-0.8
Delay disc. indifference point, 16s delay1.01.01.3-0.8-1.11.1
Delay disc. indifference point, 2s delay0.20.30.40.60.5-0.4
Delay disc. indifference point, 24s delay0.30.30.40.50.5-0.6
Delay disc. indifference point, 4s delay0.10.10.20.4-0.0-0.0
Delay disc. indifference point, 8s delay0.10.10.10.30.1-0.2
Indifference point function ln k0.30.50.5-0.7-0.70.7
Indifference point function log k0.30.50.5-0.7-0.70.7
Patch foraging total patch changes 0 sec0.20.30.6-0.7-0.50.4
Patch foraging total patch changes 12 sec1.31.72.31.11.5-1.3
Patch foraging total patch changes 18 sec0.30.30.5-0.7-0.60.5
Patch foraging total patch changes 24 sec0.91.11.3-1.1-1.11.0
Patch foraging total patch changes 6 sec0.10.20.5-0.7-0.20.2
Patch foraging time to switch 0 sec2.03.25.22.31.5-1.4
Patch foraging water rate 0 sec2.54.05.3-2.3-1.91.8
Patch foraging water rate 12 sec4.36.68.9-3.0-2.32.4
Patch foraging water rate 18 sec0.00.00.0-0.10.1-0.0
Patch foraging water rate 24 sec0.10.10.2-0.5-0.30.3
Patch foraging water rate 6 sec1.42.12.1-1.4-1.51.4
Seeking ratio, delayed vs. immediate footshock3.33.84.6-2.1-1.81.9
Distance traveled before self-admin0.30.30.7-0.8-0.30.4
Distance traveled after self-admin3.13.54.5-2.1-1.71.8
Extensor digitorum longus weight1.34.96.3-2.0-2.52.1
Bone: elastic displacement0.20.30.4-0.7-0.40.4
Bone: elastic work0.30.40.8-0.9-0.40.5
Bone: endosteal estimation0.10.20.40.10.5-0.6
Bone: endosteal perimeter0.30.60.90.40.8-0.9
Epididymis fat weight0.10.10.2-0.10.4-0.4
Delta time in closed arm before/after self-admin0.80.81.7-1.3-0.60.6
Delta time in open arm before/after self-admin0.20.20.50.70.3-0.3
Diff in mean of infusions in LGA sessions0.00.00.10.00.2-0.2
Delay discount exponential model param0.20.20.3-0.6-0.20.3
Extinction: sum of active levers before priming0.00.00.10.30.1-0.1
Active lever presses in extinction session 61.41.41.8-1.4-1.01.1
Bone: final force0.00.00.0-0.10.0-0.1
Bone: final moment0.00.00.1-0.3-0.10.0
Food consumed during 24 hour testing period0.10.10.2-0.4-0.40.4
Glucose0.00.10.10.2-0.3-0.1
Heart weight1.21.81.9-1.3-1.41.3
Delay discount hyperbolic model param0.20.20.4-0.7-0.30.4
Intermittent access intake day 1-15 change1.81.81.9-1.3-1.41.4
Intermittent access intake escalation1.51.51.6-1.1-1.21.3
Intermittent access intake escalation 20.10.10.1-0.2-0.30.3
Intermitt. access day 1 inactive lever presses1.61.71.7-1.3-1.31.3
Intermitt. access day 15 inactive lever presses0.30.40.5-0.5-0.70.7
Intermitt. access escalation Index0.50.40.6-0.6-0.80.6
Intermittent access day 1 total infusions0.10.10.1-0.3-0.30.3
Intermittent access day 15 total infusions1.31.51.7-1.2-1.21.3
Intermittent access terminal intake (last 3 days)0.40.40.5-0.7-0.60.6
Intermittent access total infusions0.60.60.7-0.8-0.70.8
Intermittent access day 1 locomotion0.40.40.6-0.4-0.80.8
Intermittent access day 15 total locomotion0.10.10.20.1-0.40.4
Intermittent access total locomotion0.50.50.7-0.5-0.80.9
Intermittent access standard deviation4.54.85.5-1.9-2.32.3
Left kidney weight8.724.527.8-5.3-4.84.8
Right kidney weight6.518.220.0-4.5-4.24.2
Cocaine induced anxiety0.10.10.1-0.1-0.30.3
Post-drug Anxiety0.30.30.50.70.5-0.5
Baseline Anxiety0.00.00.1-0.2-0.20.2
Tail length0.61.82.50.91.6-1.4
Length with tail0.00.10.2-0.40.3-0.1
Length without tail0.91.92.0-1.4-1.41.4
Times rat made contact with spout0.10.10.2-0.3-0.50.3
Lifetime Intake0.60.70.8-0.9-0.80.9
Liver weight, left0.40.61.2-1.1-0.60.6
Liver weight, right0.00.00.1-0.3-0.1-0.0
Locomotor activity0.00.00.00.20.20.0
Locomotor testing distance0.10.20.2-0.5-0.30.5
Locomotor testing rearing0.00.00.1-0.0-0.30.2
Locomotion in novel chamber2.12.62.8-1.7-1.51.7
Locomotion in novel chamber post-restriction0.30.30.4-0.6-0.50.6
Fecal boli incidents, locomotor time 10.00.00.00.0-0.0-0.1
Change in fecal boli incidents, locomotor task0.90.80.91.00.9-0.8
Time >=10cm from walls, locomotor time 10.60.60.80.30.9-0.9
Bouts of movement, locomotor time 10.91.01.11.00.9-1.0
Total resting periods, locomotor time 10.70.80.91.00.8-0.9
Rest time, locomotor task time 10.20.20.30.50.4-0.5
Distance moved, locomotor task time 10.10.10.1-0.30.3-0.1
Vertical activity count, locomotor time 10.40.50.7-0.8-0.50.7
Time >=10cm from walls, locomotor time 20.20.20.4-0.7-0.20.2
Bouts of movement, locomotor time 20.40.40.50.60.7-0.7
Total resting periods, locomotor time 20.50.50.50.70.7-0.7
Rest time, locomotor task time 20.30.30.60.80.3-0.4
Distance moved, locomotor task time 21.31.52.7-1.6-0.81.0
Vertical activity count, locomotor time 22.12.33.4-1.8-1.21.3
Light reinforcement 10.10.20.4-0.4-0.40.6
Light reinforcement 21.41.92.5-1.6-1.21.4
Bone: marrow area0.10.20.3-0.00.4-0.5
Bone: maximum diameter0.10.10.4-0.6-0.20.2
Bone: maximum force0.00.00.1-0.3-0.1-0.0
Bone: maximum moment0.10.10.3-0.5-0.20.1
Mean time between licks in bursts1.42.02.41.51.4-1.3
Mean num. licks in bursts0.10.10.1-0.3-0.40.1
Cd content in liver0.10.20.30.30.4-0.5
Co content in liver0.60.70.90.70.8-0.9
Cu content in liver0.00.10.10.10.3-0.3
Fe content in liver1.01.21.4-1.1-1.21.1
K content in liver1.31.31.81.01.3-1.1
Mg content in liver0.00.00.1-0.1-0.20.1
Mn content in liver0.00.00.1-0.20.2-0.0
Na content in liver0.90.91.40.71.2-1.0
Rb content in liver0.00.00.10.1-0.3-0.1
Se content in liver0.20.20.4-0.10.6-0.5
Sr content in liver0.00.00.0-0.10.10.0
Zn content in liver0.20.20.30.50.3-0.5
Bone: minimum diameter0.30.51.3-1.1-0.50.4
Time in familiar zone, hab. session 10.20.20.30.10.6-0.6
Time in novel zone, hab. session 10.10.10.10.30.2-0.3
Total zone transitions, hab. session 10.00.00.00.20.1-0.2
Total locomotion distance, hab. session 10.30.50.6-0.6-0.80.7
Locomotion velocity, hab. session 10.10.20.3-0.3-0.60.5
Time in familiar zone, hab. session 20.60.60.80.50.9-0.9
Time in novel zone, hab. session 20.20.20.2-0.3-0.50.4
Total zone transitions, hab. session 20.00.00.00.0-0.0-0.0
Total locomotion distance, hab. session 20.30.40.5-0.6-0.70.7
Locomotion velocity, hab. session 20.50.60.7-0.8-0.80.8
Novel to familiar place preference ratio1.01.01.1-1.0-1.01.0
Novelty place preference0.50.50.6-0.7-0.70.7
Time in novel zone, NPP test0.30.30.4-0.6-0.60.6
Total zone transitions, NPP test0.71.01.0-1.0-1.01.0
Total locomotion distance, NPP test1.01.31.4-1.1-1.21.2
Locomotion velocity, NPP test1.62.32.3-1.5-1.51.5
Intraocular pressure0.30.40.5-0.6-0.70.5
Delta distance traveled before/after self-admin3.33.54.0-1.6-2.02.0
Delta ambulatory time before/after self-admin2.42.63.0-1.4-1.71.7
Parametrial fat weight0.10.20.30.40.5-0.4
Pavlov. Cond. lever latency2.12.72.91.71.5-1.7
Pavlov. Cond. magazine entry latency0.40.50.60.80.7-0.6
Pavlov. Cond. change in total contacts0.00.00.00.00.10.0
Pavlov. Cond. index score0.30.40.5-0.7-0.50.7
Pavlov. Cond. latency score0.40.50.7-0.8-0.60.8
Pavlov. Cond. lever contacts1.61.92.2-1.4-1.31.5
Pavlov. Cond. magazine entry number0.30.30.4-0.6-0.70.4
Pavlov. Cond. intertrial magazine entries0.50.60.7-0.6-0.80.8
Pavlov. Cond. lever-magazine prob. diff.0.30.40.5-0.7-0.50.7
Pavlov. Cond. response bias0.10.10.1-0.3-0.10.3
Pavlov. Cond. lever latency0.10.20.2-0.5-0.40.3
Pavlov. Cond. magazine entry latency1.61.92.11.41.3-1.4
Pavlov. Cond. change in total contacts0.20.30.30.60.6-0.5
Pavlov. Cond. index score0.81.01.21.11.0-1.0
Pavlov. Cond. latency score0.60.70.80.90.8-0.9
Pavlov. Cond. lever contacts0.10.10.10.30.3-0.2
Pavlov. Cond. magazine entry number2.42.93.3-1.7-1.61.8
Pavlov. Cond. intertrial magazine entries0.10.10.20.5-0.00.3
Pavlov. Cond. lever-magazine prob. diff.0.91.21.41.21.0-1.1
Pavlov. Cond. response bias0.60.90.91.00.9-0.9
Time in closed arm before self-admin0.91.01.51.20.8-0.9
Time in closed arm after self-admin0.00.00.00.0-0.1-0.0
Time in open arm before self-admin0.00.00.1-0.20.2-0.2
Time in open arm after self-admin0.00.00.0-0.1-0.00.1
Bone: periosteal estimation0.30.61.3-1.1-0.50.5
Bone: periosteal perimeter0.10.10.3-0.50.0-0.1
Bone: post-yield work0.20.20.30.50.5-0.4
Progressive ratio test 1 active lever presses0.20.20.2-0.4-0.40.5
Progressive ratio test 1 breakpoint0.40.40.4-0.6-0.60.6
Progressive ratio test 1 inactive lever presses0.70.80.9-1.0-0.80.8
Progressive ratio test 2 active lever presses1.11.21.4-1.2-1.01.1
Progressive ratio test 2 breakpoint1.21.31.6-1.3-1.11.1
Progressive ratio test 2 inactive lever presses1.21.41.4-1.2-1.21.2
Incentive Sensitization - Responses0.10.10.1-0.4-0.30.3
Incentive Sensitization - Breakpoint0.20.20.3-0.5-0.40.4
Sum of active levers in priming session hrs 5-60.00.00.10.10.3-0.2
Progressive ratio0.10.10.2-0.1-0.40.4
Food seeking constrained by brief footshock3.44.24.52.02.1-2.1
Seeking ratio, punishment vs. effort2.63.23.71.51.9-1.9
Retroperitoneal fat weight0.00.20.30.10.5-0.4
Reaction time number correct0.00.00.0-0.2-0.1-0.0
Reaction time mean minus median0.30.40.50.60.6-0.7
Reaction time mean minus median AUC0.20.30.40.40.6-0.6
Reaction time num false alarms0.81.11.3-0.9-1.01.2
Reaction time num false alarms AUC1.42.02.2-1.3-1.41.5
Reaction time trials correct on left0.00.00.0-0.2-0.1-0.0
Reaction time trials on left0.00.00.0-0.1-0.1-0.1
Reaction time mean0.70.91.41.20.9-0.8
Reaction time mean AUC0.91.11.51.21.0-0.9
Median of all reaction times0.91.32.11.41.0-0.8
Reaction time omissions0.30.40.70.80.4-0.5
Reaction time false alarm rate1.41.92.4-1.3-1.31.5
Reaction time premature initiation rate0.40.60.80.80.9-0.5
Reaction time premature initiations0.40.60.80.80.9-0.6
Std. dev. reaction times0.20.20.30.40.5-0.5
Reaction time trials completed0.00.00.0-0.1-0.1-0.1
Reaction time trials AUC0.10.10.1-0.3-0.30.2
Run reversals in cocaine runway, females0.60.60.91.00.7-0.6
Run reversals in cocaine runway, males2.32.22.6-1.6-1.51.4
Latency to leave start box in cocaine runway1.11.21.4-1.2-1.11.1
Latency to leave start box in cocaine runway, F1.71.82.3-1.5-1.31.3
Latency to leave start box in cocaine runway, M0.00.00.0-0.1-0.10.1
Std. dev. time between licks in bursts2.83.33.51.81.9-1.8
Total sessions with >9 infusions0.10.10.20.30.4-0.3
Short access day 1 total inactive lever presses5.25.86.4-2.5-2.32.3
Short access day 10 total inactive lever presses1.82.02.1-1.5-1.41.3
Short access day 1 total infusions0.30.30.3-0.6-0.60.6
Short access day 10 total infusions0.60.60.7-0.7-0.80.8
Short access total infusions0.70.80.9-0.8-0.90.9
Short access day 1 locomotion1.61.71.8-1.2-1.41.3
Short access day 10 total locomotion1.01.21.5-0.8-1.21.2
Short access total locomotion0.20.20.3-0.3-0.50.5
One hour access (0.3 mA shock)0.10.20.20.50.4-0.4
Compulsive drug intake0.30.30.40.70.4-0.6
One hour access (shock baseline)0.30.30.4-0.6-0.50.6
Social response proportion0.60.70.80.90.8-0.7
Social responses2.12.73.11.81.6-1.6
Social time0.00.00.1-0.0-0.20.3
Soleus weight2.78.09.0-2.8-3.02.7
Bone: stiffness0.00.00.00.00.1-0.2
Tibialis anterior weight4.415.216.2-3.8-4.03.9
Time to tail flick, vehicle, before self-admin1.21.21.4-1.0-1.21.1
Time to tail flick, vehicle, after self-admin0.70.81.1-0.5-1.10.9
Time to tail flick, test, before self-admin1.81.72.1-1.1-1.41.4
Time to tail flick, test, after self-admin1.31.41.5-1.0-1.21.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.2-0.20.2
Delta time to tail flick, test, before/after SA0.10.10.10.30.4-0.3
Tibia length0.10.30.5-0.4-0.30.7
Ambulatory time before self-admin0.40.40.9-0.9-0.30.3
Ambulatory time after self-admin2.52.73.0-1.7-1.61.6
Bone: tissue strength0.60.60.80.60.9-0.7
Total heroin consumption2.63.03.92.01.6-1.6
Bone: trabecular number0.91.41.41.21.2-1.2
Bone: trabecular spacing1.51.92.6-1.0-1.61.5
Bone: trabecular thickness1.31.52.10.91.4-1.3
Bone: trabecular tissue density0.10.20.30.30.6-0.4
Water consumed over 24 hours0.50.61.0-1.0-0.70.6
Number of responses in last shaping day2.42.52.6-1.6-1.61.5