Sirt7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Sirt7 0.13 0.08 1.8e-09 0.09 0.07 0.08 0.08 8.6e-10 9.9e-09 2.9e-09 4.3e-09
2 Liver gene expression Sirt7 0.03 0.02 1.1e-03 0.03 0.01 0.02 0.02 1.0e-04 1.3e-02 5.2e-03 9.7e-04
3 LHb intron excision ratio chr10_105897165_105898265 0.31 0.16 1.9e-03 0.02 0.08 0.04 0.06 1.1e-01 5.9e-03 5.1e-02 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.30.1-0.00.6
Area under the delay curve0.80.81.21.1-1.10.2
BMI with tail0.10.30.8-0.20.20.9
BMI without tail1.12.36.6-0.50.42.6
Body weight1.04.36.7-2.62.5-0.0
Weight adjusted by age1.51.72.5-1.61.5-0.6
Bone surface0.10.20.3-0.60.5-0.2
Bone volume0.10.10.1-0.40.30.2
Breakpoint value in progressive ratio session1.82.02.4-1.41.6-1.2
Number of licking bursts0.20.20.50.4-0.30.7
Context. condit. distance diff. score1.72.14.01.1-1.02.0
Locomotion velocity, session 10.60.61.80.0-0.1-1.3
Locomotion distance, session 12.93.74.72.1-2.21.4
Locomotion velocity, session 21.21.42.31.4-1.5-0.2
Locomotion distance, session 21.31.81.91.3-1.41.3
Locomotion velocity, session 30.20.20.50.4-0.3-0.7
Locomotion distance, session 30.91.01.51.2-1.20.1
Stereotopy head waving bouts, day 30.10.20.50.0-0.0-0.7
Stereotopy head waving duration, day 30.00.00.10.2-0.2-0.2
Locomotion velocity, session 70.40.40.60.8-0.70.4
Locomotion distance, session 73.95.06.02.4-2.31.9
Stereotopy head waving bouts, day 70.00.00.0-0.20.00.1
Stereotopy head waving duration, day 70.20.20.3-0.60.4-0.3
Locomotion velocity, session 82.12.52.71.6-1.51.6
Locomotion distance, session 84.36.29.72.1-2.13.1
Degree of sensitization distance0.50.51.20.4-0.21.1
Degree of sensitization stereotypy0.00.00.1-0.30.10.2
Conditioned locomotion0.50.60.9-0.70.71.0
Cocaine response after cond. corrected0.30.30.4-0.50.5-0.7
Cocaine response after cond. not corrected0.10.10.20.00.0-0.4
Cocaine response before conditioning0.91.11.41.2-1.20.7
Saline control response0.91.21.9-1.41.3-0.1
Bone: connectivity density0.60.91.20.9-0.91.1
Bone: cortical apparent density0.40.60.90.9-1.0-0.2
Bone: cortical area3.65.47.7-2.72.8-1.0
Bone: cortical porosity5.86.37.1-2.42.5-2.7
Bone: cortical porosity4.65.05.2-2.22.3-2.2
Bone: cortical thickness4.87.810.2-3.23.2-1.8
Bone: cortical thickness1.51.72.4-1.51.6-0.8
Bone: cortical tissue density0.50.71.11.0-1.0-0.2
Condit. Reinf. active minus inactive responses0.40.40.7-0.80.80.2
Condit. Reinf. active-inactive response ratio0.20.20.4-0.60.50.1
Condit. Reinf. active responses0.60.81.2-1.11.00.4
Condit. Reinf. inactive responses0.20.20.3-0.50.50.2
Incentive salience index mean0.20.30.4-0.60.50.3
Condit. Reinf. lever presses0.40.50.70.6-0.80.8
Condit. Reinf. active minus inactive responses0.10.10.2-0.50.30.2
Condit. Reinf. active-inactive response ratio1.41.52.2-1.51.3-0.7
Condit. Reinf. active responses0.10.20.40.1-0.20.6
Condit. Reinf. inactive responses0.70.91.11.1-1.00.8
Condit. Reinf. lever presses0.30.41.00.3-0.41.0
Condit. Reinf. lever reinforcers received0.30.40.80.3-0.40.9
Conditioned reinforcement - actives0.60.60.70.8-0.70.8
Conditioned reinforcement - inactives1.11.22.1-1.11.5-0.4
Conditioned locomotion0.00.00.10.2-0.20.2
Patch foraging indifference point 0 sec0.10.10.2-0.50.5-0.1
Patch foraging indifference point AUC0.10.10.10.2-0.30.3
Delay disc. indifference point, 0s delay0.00.10.10.3-0.30.1
Delay disc. indifference point, 16s delay3.73.74.42.1-2.11.5
Delay disc. indifference point, 2s delay0.10.10.10.3-0.3-0.3
Delay disc. indifference point, 24s delay0.90.91.21.1-1.1-0.6
Delay disc. indifference point, 4s delay0.10.10.10.3-0.3-0.2
Delay disc. indifference point, 8s delay0.20.20.40.2-0.2-0.7
Indifference point function ln k0.30.50.70.8-0.80.4
Indifference point function log k0.30.50.70.8-0.80.4
Patch foraging total patch changes 0 sec0.00.10.1-0.30.30.1
Patch foraging total patch changes 12 sec0.20.20.3-0.60.5-0.4
Patch foraging total patch changes 18 sec0.50.71.10.6-0.81.0
Patch foraging total patch changes 24 sec0.20.20.3-0.50.50.2
Patch foraging total patch changes 6 sec0.60.91.2-1.11.0-0.6
Patch foraging time to switch 0 sec0.10.10.20.4-0.4-0.2
Patch foraging water rate 0 sec0.30.50.5-0.70.70.7
Patch foraging water rate 12 sec0.50.81.60.6-0.71.3
Patch foraging water rate 18 sec0.60.71.80.4-0.51.3
Patch foraging water rate 24 sec0.91.23.30.4-0.31.8
Patch foraging water rate 6 sec0.30.40.70.5-0.60.8
Seeking ratio, delayed vs. immediate footshock0.40.40.7-0.70.80.1
Distance traveled before self-admin2.93.13.7-1.91.9-1.4
Distance traveled after self-admin0.20.20.4-0.10.40.7
Extensor digitorum longus weight0.62.34.50.9-1.32.1
Bone: elastic displacement1.61.82.3-1.51.5-0.9
Bone: elastic work9.412.115.0-3.93.9-2.5
Bone: endosteal estimation0.51.11.80.9-0.91.3
Bone: endosteal perimeter0.30.60.9-1.00.9-0.3
Epididymis fat weight0.10.30.6-0.30.40.8
Delta time in closed arm before/after self-admin0.40.40.60.7-0.80.5
Delta time in open arm before/after self-admin0.10.10.20.2-0.20.4
Diff in mean of infusions in LGA sessions0.10.10.20.10.1-0.4
Delay discount exponential model param0.70.71.1-1.01.00.1
Extinction: sum of active levers before priming0.20.20.50.3-0.4-0.7
Active lever presses in extinction session 61.01.01.8-0.80.8-1.3
Bone: final force2.64.26.2-2.52.5-0.7
Bone: final moment3.65.88.3-2.92.9-1.0
Food consumed during 24 hour testing period0.10.10.2-0.40.40.1
Glucose2.23.38.3-0.90.9-2.9
Heart weight0.20.30.4-0.60.6-0.2
Delay discount hyperbolic model param0.70.71.1-1.01.00.0
Intermittent access intake day 1-15 change0.80.81.2-1.11.0-0.4
Intermittent access intake escalation0.40.30.6-0.80.7-0.1
Intermittent access intake escalation 22.92.84.0-2.01.6-1.3
Intermitt. access day 1 inactive lever presses1.41.52.1-1.41.4-0.7
Intermitt. access day 15 inactive lever presses0.10.10.4-0.10.20.6
Intermitt. access escalation Index0.70.61.40.6-0.41.2
Intermittent access day 1 total infusions0.10.10.3-0.30.50.2
Intermittent access day 15 total infusions0.20.20.4-0.40.60.3
Intermittent access terminal intake (last 3 days)0.50.61.1-0.81.0-0.1
Intermittent access total infusions0.20.20.4-0.30.60.3
Intermittent access day 1 locomotion0.10.10.30.1-0.00.5
Intermittent access day 15 total locomotion0.30.40.5-0.70.7-0.4
Intermittent access total locomotion0.10.10.2-0.40.50.0
Intermittent access standard deviation1.51.62.6-1.11.1-1.6
Left kidney weight0.30.80.9-0.70.9-0.9
Right kidney weight0.00.00.10.00.1-0.3
Cocaine induced anxiety8.49.711.9-3.43.4-2.4
Post-drug Anxiety2.32.52.9-1.71.7-1.4
Baseline Anxiety6.36.79.43.1-3.01.4
Tail length0.92.63.5-1.91.71.2
Length with tail1.45.17.2-2.72.6-1.1
Length without tail1.83.97.5-1.51.5-2.7
Times rat made contact with spout3.03.43.8-1.91.9-1.7
Lifetime Intake0.00.10.1-0.10.40.2
Liver weight, left0.81.32.2-0.90.9-1.5
Liver weight, right0.81.41.9-1.41.3-0.6
Locomotor activity0.20.20.40.6-0.6-0.0
Locomotor testing distance0.71.21.71.3-1.20.6
Locomotor testing rearing0.50.81.01.0-1.00.7
Locomotion in novel chamber0.70.81.01.0-1.00.7
Locomotion in novel chamber post-restriction1.11.31.9-1.41.4-0.2
Fecal boli incidents, locomotor time 10.60.60.80.9-0.90.5
Change in fecal boli incidents, locomotor task0.90.92.1-0.50.5-1.4
Time >=10cm from walls, locomotor time 10.90.91.80.7-0.71.3
Bouts of movement, locomotor time 10.40.40.70.8-0.8-0.1
Total resting periods, locomotor time 10.30.30.40.6-0.6-0.4
Rest time, locomotor task time 10.30.30.7-0.40.4-0.8
Distance moved, locomotor task time 10.10.10.3-0.00.00.5
Vertical activity count, locomotor time 10.50.51.20.4-0.41.1
Time >=10cm from walls, locomotor time 20.10.10.10.3-0.30.3
Bouts of movement, locomotor time 21.01.01.41.2-1.20.6
Total resting periods, locomotor time 21.41.41.81.3-1.30.9
Rest time, locomotor task time 20.00.00.00.2-0.2-0.1
Distance moved, locomotor task time 20.00.00.00.1-0.10.2
Vertical activity count, locomotor time 20.91.01.30.9-0.91.1
Light reinforcement 10.40.82.00.4-0.41.4
Light reinforcement 20.20.20.4-0.40.40.6
Bone: marrow area0.51.11.70.9-0.91.3
Bone: maximum diameter0.71.31.8-1.31.3-0.4
Bone: maximum force2.13.65.3-2.32.3-0.4
Bone: maximum moment2.95.07.2-2.72.7-0.7
Mean time between licks in bursts0.91.31.91.4-1.30.6
Mean num. licks in bursts1.41.71.8-1.31.3-1.3
Cd content in liver1.21.31.71.3-1.30.7
Co content in liver0.00.10.10.2-0.20.2
Cu content in liver2.12.52.9-1.41.7-1.7
Fe content in liver0.60.71.01.0-0.90.5
K content in liver0.30.30.7-0.10.30.8
Mg content in liver2.12.23.41.4-1.11.8
Mn content in liver0.10.10.2-0.40.5-0.3
Na content in liver0.00.00.0-0.00.1-0.2
Rb content in liver0.40.41.20.4-0.11.1
Se content in liver0.00.00.1-0.10.20.2
Sr content in liver2.22.13.4-1.21.2-1.8
Zn content in liver0.10.10.10.10.2-0.4
Bone: minimum diameter2.03.75.3-2.32.3-0.8
Time in familiar zone, hab. session 10.20.20.2-0.30.4-0.5
Time in novel zone, hab. session 10.10.10.20.2-0.40.4
Total zone transitions, hab. session 10.40.60.70.8-0.80.7
Total locomotion distance, hab. session 10.30.41.00.4-0.41.0
Locomotion velocity, hab. session 10.30.41.00.4-0.31.0
Time in familiar zone, hab. session 20.30.30.30.6-0.50.5
Time in novel zone, hab. session 20.00.00.10.2-0.3-0.0
Total zone transitions, hab. session 22.83.64.51.7-1.82.1
Total locomotion distance, hab. session 22.02.64.81.2-1.32.2
Locomotion velocity, hab. session 21.52.04.20.9-0.92.1
Novel to familiar place preference ratio3.73.84.7-2.12.2-1.5
Novelty place preference3.83.94.8-2.12.2-1.6
Time in novel zone, NPP test2.72.83.5-1.81.9-1.3
Total zone transitions, NPP test3.95.66.62.2-2.32.6
Total locomotion distance, NPP test3.54.87.31.9-1.92.7
Locomotion velocity, NPP test2.02.94.91.4-1.42.2
Intraocular pressure0.10.10.3-0.20.10.6
Delta distance traveled before/after self-admin1.82.02.31.5-1.21.5
Delta ambulatory time before/after self-admin2.62.83.51.9-1.61.5
Parametrial fat weight0.71.42.2-1.41.5-0.3
Pavlov. Cond. lever latency2.93.74.42.0-1.72.1
Pavlov. Cond. magazine entry latency4.05.26.3-2.52.3-2.0
Pavlov. Cond. change in total contacts2.52.73.3-1.71.4-1.8
Pavlov. Cond. index score3.54.55.7-2.42.2-1.7
Pavlov. Cond. latency score3.74.75.6-2.42.2-1.9
Pavlov. Cond. lever contacts1.31.61.8-1.41.2-1.2
Pavlov. Cond. magazine entry number5.46.77.62.8-2.52.5
Pavlov. Cond. intertrial magazine entries0.60.71.50.6-0.51.2
Pavlov. Cond. lever-magazine prob. diff.3.84.76.0-2.52.3-1.7
Pavlov. Cond. response bias4.45.36.2-2.52.3-2.1
Pavlov. Cond. lever latency0.50.71.7-0.40.4-1.3
Pavlov. Cond. magazine entry latency2.83.33.61.9-1.91.6
Pavlov. Cond. change in total contacts1.01.41.91.1-1.11.4
Pavlov. Cond. index score1.01.31.81.0-1.01.3
Pavlov. Cond. latency score1.21.52.21.1-1.11.5
Pavlov. Cond. lever contacts0.60.92.20.4-0.51.5
Pavlov. Cond. magazine entry number2.53.03.2-1.81.8-1.7
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.80.80.1
Pavlov. Cond. lever-magazine prob. diff.1.21.51.91.1-1.11.4
Pavlov. Cond. response bias0.91.22.00.8-0.91.4
Time in closed arm before self-admin0.80.91.1-0.81.0-1.0
Time in closed arm after self-admin1.31.32.5-0.80.9-1.6
Time in open arm before self-admin0.90.91.51.0-1.20.6
Time in open arm after self-admin0.91.01.21.0-1.10.9
Bone: periosteal estimation0.51.11.7-1.31.30.1
Bone: periosteal perimeter3.66.07.4-2.72.7-1.8
Bone: post-yield work0.60.81.10.8-0.91.0
Progressive ratio test 1 active lever presses0.30.30.5-0.50.70.3
Progressive ratio test 1 breakpoint0.40.40.8-0.60.90.2
Progressive ratio test 1 inactive lever presses0.50.50.7-0.80.80.4
Progressive ratio test 2 active lever presses0.20.20.5-0.40.7-0.1
Progressive ratio test 2 breakpoint0.10.10.2-0.20.40.3
Progressive ratio test 2 inactive lever presses0.40.50.8-0.70.9-0.4
Incentive Sensitization - Responses0.20.20.4-0.40.60.0
Incentive Sensitization - Breakpoint0.20.20.4-0.40.6-0.1
Sum of active levers in priming session hrs 5-61.91.82.3-1.51.5-1.0
Progressive ratio0.10.10.20.5-0.4-0.0
Food seeking constrained by brief footshock0.30.40.7-0.40.4-0.8
Seeking ratio, punishment vs. effort0.00.00.1-0.20.10.1
Retroperitoneal fat weight1.23.96.3-2.32.50.0
Reaction time number correct6.18.712.62.6-2.63.5
Reaction time mean minus median0.50.61.2-0.60.5-1.1
Reaction time mean minus median AUC0.10.10.2-0.20.1-0.4
Reaction time num false alarms0.10.10.20.4-0.20.1
Reaction time num false alarms AUC0.40.50.80.9-0.70.4
Reaction time trials correct on left6.18.712.62.6-2.63.5
Reaction time trials on left6.39.113.02.6-2.73.6
Reaction time mean0.00.00.0-0.20.10.2
Reaction time mean AUC0.10.20.50.3-0.30.7
Median of all reaction times0.10.10.30.0-0.10.6
Reaction time omissions0.10.20.40.3-0.30.6
Reaction time false alarm rate0.70.92.1-0.50.7-1.4
Reaction time premature initiation rate0.30.40.60.7-0.80.1
Reaction time premature initiations2.94.14.32.0-2.12.0
Std. dev. reaction times0.10.20.30.5-0.60.1
Reaction time trials completed6.39.113.02.6-2.73.6
Reaction time trials AUC6.18.812.82.6-2.63.6
Run reversals in cocaine runway, females1.71.61.71.3-1.31.2
Run reversals in cocaine runway, males3.13.03.4-1.81.8-1.5
Latency to leave start box in cocaine runway0.40.40.50.7-0.70.6
Latency to leave start box in cocaine runway, F1.81.92.01.4-1.41.4
Latency to leave start box in cocaine runway, M0.30.30.3-0.60.6-0.4
Std. dev. time between licks in bursts2.93.56.51.4-1.52.5
Total sessions with >9 infusions0.20.20.50.7-0.40.3
Short access day 1 total inactive lever presses1.21.31.41.2-1.11.2
Short access day 10 total inactive lever presses1.92.13.4-1.91.6-0.5
Short access day 1 total infusions0.50.60.91.0-0.90.0
Short access day 10 total infusions0.60.71.2-0.91.1-0.4
Short access total infusions0.00.00.00.00.2-0.0
Short access day 1 locomotion0.10.10.4-0.00.0-0.7
Short access day 10 total locomotion0.60.71.3-0.70.6-1.2
Short access total locomotion0.20.20.5-0.10.2-0.7
One hour access (0.3 mA shock)0.30.40.6-0.50.80.5
Compulsive drug intake0.20.20.3-0.20.50.4
One hour access (shock baseline)0.10.20.30.3-0.30.5
Social response proportion0.70.70.90.9-1.00.7
Social responses0.20.30.30.6-0.60.5
Social time0.30.30.30.6-0.60.6
Soleus weight0.30.81.4-1.21.00.2
Bone: stiffness0.10.20.2-0.50.50.2
Tibialis anterior weight0.20.61.10.4-0.71.0
Time to tail flick, vehicle, before self-admin0.00.00.10.1-0.10.3
Time to tail flick, vehicle, after self-admin1.01.11.91.4-1.10.4
Time to tail flick, test, before self-admin0.30.30.3-0.60.6-0.4
Time to tail flick, test, after self-admin0.10.10.10.30.1-0.2
Delta time to tail flick, vehicle, before/after SA0.90.91.11.1-0.90.8
Delta time to tail flick, test, before/after SA0.10.10.30.10.0-0.5
Tibia length7.220.227.5-5.25.0-2.8
Ambulatory time before self-admin3.23.34.4-2.12.0-1.3
Ambulatory time after self-admin0.10.10.2-0.20.50.3
Bone: tissue strength0.20.20.6-0.20.20.8
Total heroin consumption1.41.72.0-1.11.3-1.4
Bone: trabecular number0.00.00.00.2-0.10.2
Bone: trabecular spacing2.43.15.51.4-1.42.4
Bone: trabecular thickness3.03.64.0-1.81.9-2.0
Bone: trabecular tissue density0.30.40.70.8-0.80.1
Water consumed over 24 hours0.70.81.3-0.70.7-1.1
Number of responses in last shaping day0.10.10.1-0.20.30.2